Query psy12225
Match_columns 396
No_of_seqs 233 out of 354
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 22:01:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yfba1 b.129.1.3 (A:3-53) Tra 18.2 27 0.002 24.1 1.9 15 75-89 17-31 (51)
2 d2gf6a1 d.38.1.1 (A:1-134) Hyp 10.5 47 0.0034 24.1 1.5 19 69-87 116-134 (134)
3 d1n9wa2 d.104.1.1 (A:111-414) 10.1 42 0.0031 29.2 1.2 71 34-118 206-277 (304)
4 d1eova2 d.104.1.1 (A:205-557) 9.2 79 0.0057 28.0 2.8 59 48-118 259-318 (353)
5 d1kxpd3 a.126.1.1 (D:405-473) 8.8 1.1E+02 0.0079 22.0 2.8 30 340-369 13-42 (69)
6 d1afwa2 c.95.1.1 (A:294-417) T 8.1 49 0.0035 26.2 0.7 24 18-43 31-54 (124)
7 d1s7ea2 a.35.1.7 (A:6-85) Hepa 7.8 44 0.0032 24.8 0.3 15 67-81 28-42 (80)
8 d1ulqa2 c.95.1.1 (A:276-400) B 7.5 54 0.004 26.0 0.7 21 21-43 31-51 (125)
9 d1m3ka2 c.95.1.1 (A:269-392) B 7.0 59 0.0043 25.7 0.7 23 19-43 30-52 (124)
10 d1x2la1 a.35.1.7 (A:9-95) Home 6.6 52 0.0038 24.8 0.1 15 67-81 35-49 (87)
No 1
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=18.18 E-value=27 Score=24.07 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.3
Q ss_pred CCcHHHHHHhCCCCC
Q psy12225 75 DLSAELRTALGMPVG 89 (396)
Q Consensus 75 ~Ls~eLr~ALg~~~~ 89 (396)
.||.|||.+|+|.++
T Consensus 17 ViPkElR~~L~I~~~ 31 (51)
T d1yfba1 17 VIPIELRRTLGIAEK 31 (51)
T ss_dssp ECCHHHHHHTTCCTT
T ss_pred EccHHHHHhcCCCCC
Confidence 579999999999875
No 2
>d2gf6a1 d.38.1.1 (A:1-134) Hypothetical protein SSO2295 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.52 E-value=47 Score=24.12 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.3
Q ss_pred ccCCCCCCcHHHHHHhCCC
Q psy12225 69 KEKKPGDLSAELRTALGMP 87 (396)
Q Consensus 69 ~~~~Pg~Ls~eLr~ALg~~ 87 (396)
...+|-.||++||++|.|+
T Consensus 116 ~~~~~~~~P~~l~~~l~~~ 134 (134)
T d2gf6a1 116 KIWKSTEMPKEIMDKLSIK 134 (134)
T ss_dssp TTTEECCCCHHHHHHHTCC
T ss_pred CCCcCcCCCHHHHHHhcCC
Confidence 4567889999999999985
No 3
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=10.13 E-value=42 Score=29.19 Aligned_cols=71 Identities=21% Similarity=0.356 Sum_probs=39.5
Q ss_pred chhhhhhhcCCCCCCCCccccccccccccchhhc-cccCCCCCCcHHHHHHhCCCCCCCCCcccccccCCCChHHHHhhh
Q psy12225 34 DYQKLHDAFFKWQTKPRLSIHGDLYYEGKEFETK-LKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQR 112 (396)
Q Consensus 34 Dy~~lhDaffk~qtkP~l~~~gd~Yyegke~e~~-~~~~~Pg~Ls~eLr~ALg~~~~~~~~k~~~re~~~Pppw~~~mq~ 112 (396)
||-+-.-+|++....+..+.-=|+|+.|-|+-.- .....|=.|...++ +.|+.. .+--|++++.+
T Consensus 206 ~~P~~~~p~~~~~~~~~~a~rfel~~~G~El~nG~~e~~d~~~l~~r~~-~~~~~~-------------e~~~~yl~al~ 271 (304)
T d1n9wa2 206 RYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLK-AKGMDP-------------EAFHGYLEVFK 271 (304)
T ss_dssp CCBGGGSCTTBCBCTTSBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCG-------------GGGHHHHGGGG
T ss_pred CChhhhCchhhcccccceeehhccccCcEEEeccccccCCHHHHHHHHH-HcCCCH-------------HHHHHHHHHHh
Confidence 4444444555433334444445899999876321 11223333444444 445532 12249999999
Q ss_pred cCCCCC
Q psy12225 113 YGPPPS 118 (396)
Q Consensus 113 ~g~pPs 118 (396)
+|.||.
T Consensus 272 ~G~PP~ 277 (304)
T d1n9wa2 272 YGMPPH 277 (304)
T ss_dssp BCCCSE
T ss_pred cCCCCC
Confidence 999995
No 4
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.22 E-value=79 Score=27.99 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCCccccccccccccchhhcc-ccCCCCCCcHHHHHHhCCCCCCCCCcccccccCCCChHHHHhhhcCCCCC
Q psy12225 48 KPRLSIHGDLYYEGKEFETKL-KEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPS 118 (396)
Q Consensus 48 kP~l~~~gd~Yyegke~e~~~-~~~~Pg~Ls~eLr~ALg~~~~~~~~k~~~re~~~Pppw~~~mq~~g~pPs 118 (396)
.|.+...=|+|+.|.|+-.-. ....|-.+-..++ +.|+..... .=-|++.+.+||.||.
T Consensus 259 ~~~~a~rfeL~~~G~El~nG~~e~~d~~~~~~r~~-~~~~~~~~~-----------~~~~yl~al~~G~PP~ 318 (353)
T d1eova2 259 NPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMK-AHGLSPEDP-----------GLKDYCDGFSYGCPPH 318 (353)
T ss_dssp CTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCTTST-----------TTHHHHHHHTTCCCCE
T ss_pred hhhhhhceeeeeeceEEcceecccCCHHHHHHHHH-HcCCChhhh-----------HHHHHHHHhHcCCCCC
Confidence 455566667899998864321 1112222222333 445543211 1139999999999983
No 5
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.83 E-value=1.1e+02 Score=22.04 Aligned_cols=30 Identities=3% Similarity=0.267 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhccCCCCCchhHHHHHHH
Q psy12225 340 AMAARYEQQMREQTSGLQKEDLSDMLAEHV 369 (396)
Q Consensus 340 ~~~~~ye~~~~~~~~~~~~ed~sdmva~~~ 369 (396)
..+.+.-++.|........++|-|||+.|+
T Consensus 13 e~kkkL~e~lr~k~P~as~~~l~~mVekrs 42 (69)
T d1kxpd3 13 EYKKKLAERLKAKLPDATPKELAKLVNKRS 42 (69)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHh
Confidence 356666677777767778899999999885
No 6
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.09 E-value=49 Score=26.21 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=17.7
Q ss_pred HHHHHhhCCCCCccCCchhhhhhhcC
Q psy12225 18 SKMRERVRPKLGKIDIDYQKLHDAFF 43 (396)
Q Consensus 18 ~k~Rerv~pk~g~ldiDy~~lhDaff 43 (396)
+|+-+|..-++. |||+-++|+||.
T Consensus 31 ~klL~r~gl~~~--Did~~EinEAFA 54 (124)
T d1afwa2 31 PKVLEATGLQVQ--DIDIFEINEAFA 54 (124)
T ss_dssp HHHHHHHTCCGG--GCSEEEECCSBH
T ss_pred HHHHHHcCCCcc--cCcEEEeccchh
Confidence 344455655555 899999999998
No 7
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.84 E-value=44 Score=24.76 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=9.7
Q ss_pred ccccCCCCCCcHHHH
Q psy12225 67 KLKEKKPGDLSAELR 81 (396)
Q Consensus 67 ~~~~~~Pg~Ls~eLr 81 (396)
+.-.+-+|.||+=||
T Consensus 28 ~vL~rsQGtlSdLL~ 42 (80)
T d1s7ea2 28 RVLCRSQGTLSDLLR 42 (80)
T ss_dssp HTSSSCSSHHHHHTT
T ss_pred HHHccChHHHHHHHc
Confidence 334457788887666
No 8
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]}
Probab=7.51 E-value=54 Score=25.96 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=15.6
Q ss_pred HHhhCCCCCccCCchhhhhhhcC
Q psy12225 21 RERVRPKLGKIDIDYQKLHDAFF 43 (396)
Q Consensus 21 Rerv~pk~g~ldiDy~~lhDaff 43 (396)
-+|.--++ =|||+.++|+||.
T Consensus 31 L~r~gl~~--~Did~~EinEAFA 51 (125)
T d1ulqa2 31 LERAGLSF--SDLGLIELNEAFA 51 (125)
T ss_dssp HHHTTCCG--GGCSEEEECCSBH
T ss_pred hhccCcCc--cccchheeccccc
Confidence 34454444 4899999999998
No 9
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]}
Probab=6.98 E-value=59 Score=25.71 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=16.2
Q ss_pred HHHHhhCCCCCccCCchhhhhhhcC
Q psy12225 19 KMRERVRPKLGKIDIDYQKLHDAFF 43 (396)
Q Consensus 19 k~Rerv~pk~g~ldiDy~~lhDaff 43 (396)
|+-+|..-++. |||+.++|+||.
T Consensus 30 ~lL~r~gl~~~--Did~~EinEAFA 52 (124)
T d1m3ka2 30 KALERAGWKIG--DLDLVEANEAFA 52 (124)
T ss_dssp HHHHHHTCCGG--GCSEEEECCSBH
T ss_pred HHHHHcCCChh--cccHHHhcccch
Confidence 33444544443 899999999998
No 10
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.62 E-value=52 Score=24.75 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=10.8
Q ss_pred ccccCCCCCCcHHHH
Q psy12225 67 KLKEKKPGDLSAELR 81 (396)
Q Consensus 67 ~~~~~~Pg~Ls~eLr 81 (396)
+.-.+-+|.||+=|+
T Consensus 35 ~VL~rsQGtlSdLL~ 49 (87)
T d1x2la1 35 YVLGLSQGSVSEILA 49 (87)
T ss_dssp HTTCSCHHHHHHHHH
T ss_pred HHHhhChHHHHHHHh
Confidence 344467888888888
Done!