Your job contains 1 sequence.
>psy12225
MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYE
GKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYP
NLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDETGKPLYG
DVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAEG
LMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTH
MYEVPGAGASAPGAPVKRTLPSSVELALDPSELDLVDTDAMAARYEQQMREQTSGLQKED
LSDMLAEHVARQKNKRKRQQTTQDNKQAKKYKEFKF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12225
(396 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q13435 - symbol:SF3B2 "Splicing factor 3B subun... 781 1.3e-77 1
UNIPROTKB|E9PPJ0 - symbol:SF3B2 "Splicing factor 3B subun... 781 1.3e-77 1
UNIPROTKB|F1MC31 - symbol:SF3B2 "Uncharacterized protein"... 781 1.3e-77 1
UNIPROTKB|E2RL65 - symbol:SF3B2 "Uncharacterized protein"... 781 1.3e-77 1
UNIPROTKB|F1RU38 - symbol:SF3B2 "Uncharacterized protein"... 781 1.3e-77 1
ZFIN|ZDB-GENE-070928-1 - symbol:sf3b2 "splicing factor 3b... 774 7.1e-77 1
FB|FBgn0031493 - symbol:CG3605 species:7227 "Drosophila m... 763 1.0e-75 1
WB|WBGene00021004 - symbol:W03F9.10 species:6239 "Caenorh... 671 5.8e-66 1
UNIPROTKB|O16997 - symbol:W03F9.10 "Protein W03F9.10" spe... 671 5.8e-66 1
DICTYBASE|DDB_G0284555 - symbol:sf3b2 "splicing factor 3B... 490 3.3e-61 2
UNIPROTKB|G4NAE3 - symbol:MGG_03182 "Splicing factor 3B s... 495 3.8e-56 2
UNIPROTKB|H0YEX5 - symbol:SF3B2 "Splicing factor 3B subun... 561 2.6e-54 1
POMBASE|SPAC22F8.10c - symbol:sap145 "U2 snRNP-associated... 561 2.6e-54 1
ASPGD|ASPL0000031751 - symbol:AN5098 species:162425 "Emer... 549 4.9e-53 1
RGD|1307159 - symbol:Sf3b2 "splicing factor 3b, subunit 2... 282 9.7e-25 1
CGD|CAL0000205 - symbol:orf19.7581 species:5476 "Candida ... 265 2.0e-22 1
UNIPROTKB|Q5ACR1 - symbol:CUS1 "Potential spliceosomal U2... 265 2.0e-22 1
SGD|S000004853 - symbol:CUS1 "Protein required for assemb... 228 6.7e-17 1
TAIR|locus:2200126 - symbol:AT1G11520 "AT1G11520" species... 121 1.9e-05 1
>UNIPROTKB|Q13435 [details] [associations]
symbol:SF3B2 "Splicing factor 3B subunit 2" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR003034
InterPro:IPR007180 Pfam:PF02037 Pfam:PF04037 PROSITE:PS50800
SMART:SM00513 GO:GO:0019048 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003676 GO:GO:0000398 GO:GO:0071013 eggNOG:COG5182 KO:K12829
InterPro:IPR006568 Pfam:PF04046 SMART:SM00581 GO:GO:0005689
EMBL:AK290850 EMBL:AK300016 EMBL:BC000401 EMBL:BC007610
EMBL:BC014125 EMBL:BC053577 EMBL:U41371 IPI:IPI00221106
RefSeq:NP_006833.2 UniGene:Hs.406423 PDB:2DO5 PDBsum:2DO5
ProteinModelPortal:Q13435 SMR:Q13435 IntAct:Q13435
MINT:MINT-4915443 STRING:Q13435 PhosphoSite:Q13435 DMDM:296452908
PaxDb:Q13435 PRIDE:Q13435 DNASU:10992 Ensembl:ENST00000322535
GeneID:10992 KEGG:hsa:10992 UCSC:uc001ogy.1 CTD:10992
GeneCards:GC11P065827 H-InvDB:HIX0009823 HGNC:HGNC:10769
HPA:HPA045028 MIM:605591 neXtProt:NX_Q13435 PharmGKB:PA35687
HOVERGEN:HBG054023 InParanoid:Q13435 OMA:MKTKMRE OrthoDB:EOG4GB75Q
ChEMBL:CHEMBL1229011 EvolutionaryTrace:Q13435 GenomeRNAi:10992
NextBio:41771 PMAP-CutDB:Q13435 ArrayExpress:Q13435 Bgee:Q13435
CleanEx:HS_SF3B2 Genevestigator:Q13435 GermOnline:ENSG00000087365
Uniprot:Q13435
Length = 895
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 146/202 (72%), Positives = 165/202 (81%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR +LQ+KEEQKT+KSKMRE+VRPK+GKIDIDYQKLHDAFFKWQTKP+L+IHGDLYYEG
Sbjct: 535 EMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEG 594
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFET+LKEKKPGDLS ELR +LGMPVGP AHK +PPPWLIAMQRYGPPPSYPN
Sbjct: 595 KEFETRLKEKKPGDLSDELRISLGMPVGPNAHK-------VPPPWLIAMQRYGPPPSYPN 647
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGG---WGKPPVDETGKPL 178
LKIPGLN+PIP+ CSFGYHAGGWGKPPVDETGKPLYGDVFGT K +E +
Sbjct: 648 LKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP 707
Query: 179 YGDVFGTSAETKTAEVNEEDIE 200
+G++ + E+ E EE E
Sbjct: 708 WGELEPSDEESSEEEEEEESDE 729
Score = 481 (174.4 bits), Expect = 9.2e-49, Sum P(2) = 9.2e-49
Identities = 108/239 (45%), Positives = 135/239 (56%)
Query: 161 FGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXXXXXXX 220
+ GGWGKPPVDETGKPLYGDVFGT+A + EE+I++T W
Sbjct: 665 YHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEEEEE 724
Query: 221 XXXXXXXXXXXXXXITPAE-GLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQL 279
ITPA+ GL+TP G +SVPAG+ETP+ IELRKKKIE M+ +E PQL
Sbjct: 725 EESDEDKPDETGF-ITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQL 783
Query: 280 FQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPS--SVELALDPSELDLVD 337
F VL EKR +G MM STH+Y++ K P VE+AL P EL+L D
Sbjct: 784 FTVLPEKRTATVGGAMMGSTHIYDMSTVMSR------KGPAPELQGVEVALAPEELEL-D 836
Query: 338 TDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAXXXXXXXXXXTTQDNKQAKKYKEFKF 396
AM +YE+ +REQ + ++KED SDM+AEH A +KKYKEFKF
Sbjct: 837 PMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 895
Score = 61 (26.5 bits), Expect = 9.2e-49, Sum P(2) = 9.2e-49
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 103 PPPWLIAMQRYG---PPP--SYPNLKIPGLNAPIPQGCSFGY---HAGGWGKPPVDETGK 154
PPP ++ Q G PPP P L+ P P P G G+ H G PP G+
Sbjct: 80 PPP--MSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPPLRVGE 137
Query: 155 PL 156
P+
Sbjct: 138 PV 139
Score = 46 (21.3 bits), Expect = 3.5e-47, Sum P(2) = 3.5e-47
Identities = 32/131 (24%), Positives = 54/131 (41%)
Query: 11 EEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEGKEFETKLKE 70
++Q L + ER + + G + K H+ + Q + + + + E + T +
Sbjct: 151 QQQAALLMQQEERAKQQ-GDHSL---KEHE-LLEQQKRAAVLLEQERQQEIAKMGTPVP- 204
Query: 71 KKPGDLSA-ELRTALG----MPVGPTAHKTFSRETVIPPPWLIAMQRYGPPP-SYPNLKI 124
+ P D+ +RT LG PVGP TV+P + R PPP N ++
Sbjct: 205 RPPQDMGQIGVRTPLGPRVAAPVGPVG----PTPTVLPMGAPVPRPRGPPPPPGDENREM 260
Query: 125 --PGLNAPIPQ 133
P + IPQ
Sbjct: 261 DDPSVGPKIPQ 271
>UNIPROTKB|E9PPJ0 [details] [associations]
symbol:SF3B2 "Splicing factor 3B subunit 2" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR003034 InterPro:IPR007180 Pfam:PF02037
Pfam:PF04037 PROSITE:PS50800 SMART:SM00513 GO:GO:0005634
GO:GO:0003676 EMBL:AP006287 InterPro:IPR006568 Pfam:PF04046
SMART:SM00581 HGNC:HGNC:10769 IPI:IPI00978402
ProteinModelPortal:E9PPJ0 SMR:E9PPJ0 PRIDE:E9PPJ0
Ensembl:ENST00000528302 ArrayExpress:E9PPJ0 Bgee:E9PPJ0
Uniprot:E9PPJ0
Length = 878
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 146/202 (72%), Positives = 165/202 (81%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR +LQ+KEEQKT+KSKMRE+VRPK+GKIDIDYQKLHDAFFKWQTKP+L+IHGDLYYEG
Sbjct: 518 EMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEG 577
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFET+LKEKKPGDLS ELR +LGMPVGP AHK +PPPWLIAMQRYGPPPSYPN
Sbjct: 578 KEFETRLKEKKPGDLSDELRISLGMPVGPNAHK-------VPPPWLIAMQRYGPPPSYPN 630
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGG---WGKPPVDETGKPL 178
LKIPGLN+PIP+ CSFGYHAGGWGKPPVDETGKPLYGDVFGT K +E +
Sbjct: 631 LKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP 690
Query: 179 YGDVFGTSAETKTAEVNEEDIE 200
+G++ + E+ E EE E
Sbjct: 691 WGELEPSDEESSEEEEEEESDE 712
Score = 481 (174.4 bits), Expect = 8.0e-49, Sum P(2) = 8.0e-49
Identities = 108/239 (45%), Positives = 135/239 (56%)
Query: 161 FGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXXXXXXX 220
+ GGWGKPPVDETGKPLYGDVFGT+A + EE+I++T W
Sbjct: 648 YHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEEEEE 707
Query: 221 XXXXXXXXXXXXXXITPAE-GLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQL 279
ITPA+ GL+TP G +SVPAG+ETP+ IELRKKKIE M+ +E PQL
Sbjct: 708 EESDEDKPDETGF-ITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQL 766
Query: 280 FQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPS--SVELALDPSELDLVD 337
F VL EKR +G MM STH+Y++ K P VE+AL P EL+L D
Sbjct: 767 FTVLPEKRTATVGGAMMGSTHIYDMSTVMSR------KGPAPELQGVEVALAPEELEL-D 819
Query: 338 TDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAXXXXXXXXXXTTQDNKQAKKYKEFKF 396
AM +YE+ +REQ + ++KED SDM+AEH A +KKYKEFKF
Sbjct: 820 PMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 878
Score = 61 (26.5 bits), Expect = 8.0e-49, Sum P(2) = 8.0e-49
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 103 PPPWLIAMQRYG---PPP--SYPNLKIPGLNAPIPQGCSFGY---HAGGWGKPPVDETGK 154
PPP ++ Q G PPP P L+ P P P G G+ H G PP G+
Sbjct: 80 PPP--MSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPPLRVGE 137
Query: 155 PL 156
P+
Sbjct: 138 PV 139
Score = 45 (20.9 bits), Expect = 3.8e-47, Sum P(2) = 3.8e-47
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 71 KKPGDLSA-ELRTALG----MPVGPTAHKTFSRETVIPPPWLIAMQRYGPPP-SYPNLKI 124
+ P D+ +RT LG PVGP TV+P + R PPP N ++
Sbjct: 188 RPPQDMGQIGVRTPLGPRVAAPVGPVG----PTPTVLPMGAPVPRPRGPPPPPGDENREM 243
Query: 125 --PGLNAPIPQ 133
P + IPQ
Sbjct: 244 DDPSVGPKIPQ 254
>UNIPROTKB|F1MC31 [details] [associations]
symbol:SF3B2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR007180 Pfam:PF04037 SMART:SM00513 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00390000006734 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 GO:GO:0005689 OMA:MKTKMRE
EMBL:DAAA02063577 IPI:IPI00905628 UniGene:Bt.1943
Ensembl:ENSBTAT00000003602 ArrayExpress:F1MC31 Uniprot:F1MC31
Length = 896
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 146/202 (72%), Positives = 165/202 (81%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR +LQ+KEEQKT+KSKMRE+VRPK+GKIDIDYQKLHDAFFKWQTKP+L+IHGDLYYEG
Sbjct: 536 EMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEG 595
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFET+LKEKKPGDLS ELR +LGMPVGP AHK +PPPWLIAMQRYGPPPSYPN
Sbjct: 596 KEFETRLKEKKPGDLSDELRISLGMPVGPNAHK-------VPPPWLIAMQRYGPPPSYPN 648
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGG---WGKPPVDETGKPL 178
LKIPGLN+PIP+ CSFGYHAGGWGKPPVDETGKPLYGDVFGT K +E +
Sbjct: 649 LKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP 708
Query: 179 YGDVFGTSAETKTAEVNEEDIE 200
+G++ + E+ E EE E
Sbjct: 709 WGELEPSDEESSEEEEEEESDE 730
Score = 481 (174.4 bits), Expect = 3.1e-48, Sum P(2) = 3.1e-48
Identities = 108/239 (45%), Positives = 135/239 (56%)
Query: 161 FGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXXXXXXX 220
+ GGWGKPPVDETGKPLYGDVFGT+A + EE+I++T W
Sbjct: 666 YHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEEEEE 725
Query: 221 XXXXXXXXXXXXXXITPAE-GLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQL 279
ITPA+ GL+TP G +SVPAG+ETP+ IELRKKKIE M+ +E PQL
Sbjct: 726 EESDEDKPDETGF-ITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQL 784
Query: 280 FQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPS--SVELALDPSELDLVD 337
F VL EKR +G MM STH+Y++ K P VE+AL P EL+L D
Sbjct: 785 FTVLPEKRTATVGGAMMGSTHIYDMSTVMSR------KGPAPELQGVEVALAPEELEL-D 837
Query: 338 TDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAXXXXXXXXXXTTQDNKQAKKYKEFKF 396
AM +YE+ +REQ + ++KED SDM+AEH A +KKYKEFKF
Sbjct: 838 PMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 896
Score = 56 (24.8 bits), Expect = 3.1e-48, Sum P(2) = 3.1e-48
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 103 PPPW-LIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPL 156
PPP L +Q PPP P PGL P + G G PP G+P+
Sbjct: 95 PPPMGLPPLQPPPPPPPPP----PGLGLGFPM--AVGPRPPNLGPPPPLRVGEPV 143
Score = 50 (22.7 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 103 PPPW---LIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPP 148
PPP L + PP P L+ P P P G G+ +PP
Sbjct: 81 PPPMSAQLSGIPMPPPPMGLPPLQPPPPPPPPPPGLGLGFPMAVGPRPP 129
>UNIPROTKB|E2RL65 [details] [associations]
symbol:SF3B2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR003034 InterPro:IPR007180 Pfam:PF02037 Pfam:PF04037
PROSITE:PS50800 SMART:SM00513 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00390000006734 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 GO:GO:0005689 CTD:10992 OMA:MKTKMRE
EMBL:AAEX03011631 RefSeq:XP_533224.2 Ensembl:ENSCAFT00000020708
GeneID:476015 KEGG:cfa:476015 Uniprot:E2RL65
Length = 895
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 146/202 (72%), Positives = 165/202 (81%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR +LQ+KEEQKT+KSKMRE+VRPK+GKIDIDYQKLHDAFFKWQTKP+L+IHGDLYYEG
Sbjct: 535 EMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEG 594
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFET+LKEKKPGDLS ELR +LGMPVGP AHK +PPPWLIAMQRYGPPPSYPN
Sbjct: 595 KEFETRLKEKKPGDLSDELRISLGMPVGPNAHK-------VPPPWLIAMQRYGPPPSYPN 647
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGG---WGKPPVDETGKPL 178
LKIPGLN+PIP+ CSFGYHAGGWGKPPVDETGKPLYGDVFGT K +E +
Sbjct: 648 LKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP 707
Query: 179 YGDVFGTSAETKTAEVNEEDIE 200
+G++ + E+ E EE E
Sbjct: 708 WGELEPSDEESSEEEEEEESDE 729
Score = 481 (174.4 bits), Expect = 3.1e-48, Sum P(2) = 3.1e-48
Identities = 108/239 (45%), Positives = 135/239 (56%)
Query: 161 FGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXXXXXXX 220
+ GGWGKPPVDETGKPLYGDVFGT+A + EE+I++T W
Sbjct: 665 YHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEEEEE 724
Query: 221 XXXXXXXXXXXXXXITPAE-GLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQL 279
ITPA+ GL+TP G +SVPAG+ETP+ IELRKKKIE M+ +E PQL
Sbjct: 725 EESDEDKPDETGF-ITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQL 783
Query: 280 FQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPS--SVELALDPSELDLVD 337
F VL EKR +G MM STH+Y++ K P VE+AL P EL+L D
Sbjct: 784 FTVLPEKRTATVGGAMMGSTHIYDMSTVMSR------KGPAPELQGVEVALAPEELEL-D 836
Query: 338 TDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAXXXXXXXXXXTTQDNKQAKKYKEFKF 396
AM +YE+ +REQ + ++KED SDM+AEH A +KKYKEFKF
Sbjct: 837 PMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 895
Score = 56 (24.8 bits), Expect = 3.1e-48, Sum P(2) = 3.1e-48
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 103 PPPW-LIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPL 156
PPP L +Q PPP P PGL P + G G PP G+P+
Sbjct: 94 PPPMGLPPLQPPPPPPPPP----PGLGLGFPM--AVGPRPPNLGPPPPLRVGEPV 142
Score = 50 (22.7 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 103 PPPW---LIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPP 148
PPP L + PP P L+ P P P G G+ +PP
Sbjct: 80 PPPMSAQLSGIPMPPPPMGLPPLQPPPPPPPPPPGLGLGFPMAVGPRPP 128
>UNIPROTKB|F1RU38 [details] [associations]
symbol:SF3B2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR007180 Pfam:PF04037 SMART:SM00513 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00390000006734 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 GO:GO:0005689 OMA:MKTKMRE EMBL:CU694743
Ensembl:ENSSSCT00000014162 Uniprot:F1RU38
Length = 879
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 146/202 (72%), Positives = 165/202 (81%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR +LQ+KEEQKT+KSKMRE+VRPK+GKIDIDYQKLHDAFFKWQTKP+L+IHGDLYYEG
Sbjct: 519 EMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEG 578
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFET+LKEKKPGDLS ELR +LGMPVGP AHK +PPPWLIAMQRYGPPPSYPN
Sbjct: 579 KEFETRLKEKKPGDLSDELRISLGMPVGPNAHK-------VPPPWLIAMQRYGPPPSYPN 631
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGG---WGKPPVDETGKPL 178
LKIPGLN+PIP+ CSFGYHAGGWGKPPVDETGKPLYGDVFGT K +E +
Sbjct: 632 LKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP 691
Query: 179 YGDVFGTSAETKTAEVNEEDIE 200
+G++ + E+ E EE E
Sbjct: 692 WGELEPSDEESSEEEEEEESDE 713
Score = 481 (174.4 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 108/239 (45%), Positives = 135/239 (56%)
Query: 161 FGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXXXXXXX 220
+ GGWGKPPVDETGKPLYGDVFGT+A + EE+I++T W
Sbjct: 649 YHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEEEEE 708
Query: 221 XXXXXXXXXXXXXXITPAE-GLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQL 279
ITPA+ GL+TP G +SVPAG+ETP+ IELRKKKIE M+ +E PQL
Sbjct: 709 EESDEDKPDETGF-ITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQL 767
Query: 280 FQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPS--SVELALDPSELDLVD 337
F VL EKR +G MM STH+Y++ K P VE+AL P EL+L D
Sbjct: 768 FTVLPEKRTATVGGAMMGSTHIYDMSTVMSR------KGPAPELQGVEVALAPEELEL-D 820
Query: 338 TDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAXXXXXXXXXXTTQDNKQAKKYKEFKF 396
AM +YE+ +REQ + ++KED SDM+AEH A +KKYKEFKF
Sbjct: 821 PMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 879
Score = 56 (24.8 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 103 PPPW-LIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPL 156
PPP L +Q PPP P PGL P + G G PP G+P+
Sbjct: 95 PPPMGLPPLQPPPPPPPPP----PGLGLGFPM--AVGPRPPNLGPPPPLRVGEPV 143
Score = 50 (22.7 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 103 PPPW---LIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPP 148
PPP L + PP P L+ P P P G G+ +PP
Sbjct: 81 PPPMSAQLSGIPMPPPPMGLPPLQPPPPPPPPPPGLGLGFPMAVGPRPP 129
>ZFIN|ZDB-GENE-070928-1 [details] [associations]
symbol:sf3b2 "splicing factor 3b, subunit 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003034 InterPro:IPR007180 Pfam:PF02037 Pfam:PF04037
PROSITE:PS50800 SMART:SM00513 ZFIN:ZDB-GENE-070928-1 GO:GO:0005634
GO:GO:0003676 GeneTree:ENSGT00390000006734 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 EMBL:CABZ01073934 EMBL:CABZ01073935
IPI:IPI00484656 Ensembl:ENSDART00000015873 ArrayExpress:F1QLC5
Bgee:F1QLC5 Uniprot:F1QLC5
Length = 826
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 145/204 (71%), Positives = 165/204 (80%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR +LQ+KE+ KT+K+KMRE+VRPK+GKIDIDYQKLHDAFFKWQ KP+L+IHGDLYYEG
Sbjct: 461 EMREALQEKEDAKTMKTKMREKVRPKMGKIDIDYQKLHDAFFKWQIKPKLTIHGDLYYEG 520
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFET+LKEKKPGDLS ELR ALGMP GP +HK +PPPWLIAMQRYGPPPSYPN
Sbjct: 521 KEFETRLKEKKPGDLSDELRVALGMPTGPNSHK-------VPPPWLIAMQRYGPPPSYPN 573
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGG---WGKPPVDETGKPL 178
LKIPGLNAPIP+GCSFGYHAGGWGKPPVDETGKPLYGDVFGT K +E +
Sbjct: 574 LKIPGLNAPIPEGCSFGYHAGGWGKPPVDETGKPLYGDVFGTNSIDFQAKAEEEEVDRTP 633
Query: 179 YGDVFGTSAETKTAEVNEE-DIEK 201
+G++ + E+ E EE D EK
Sbjct: 634 WGELEPSDEESSEEEEEEESDEEK 657
Score = 476 (172.6 bits), Expect = 3.5e-46, Sum P(2) = 3.5e-46
Identities = 110/245 (44%), Positives = 136/245 (55%)
Query: 158 GDVFG--TGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXX 215
G FG GGWGKPPVDETGKPLYGDVFGT++ A+ EE++++T W
Sbjct: 586 GCSFGYHAGGWGKPPVDETGKPLYGDVFGTNSIDFQAKAEEEEVDRTPWGELEPSDEESS 645
Query: 216 XXXXXXXXXXXXXXXXXXXITPAE---GLMTPSGITSVPAGLETPDSIELRKKKIESDME 272
TPA+ GL+TP G +SVPAG+ETP+ IELRKKKIE M+
Sbjct: 646 EEEEEEESDEEKPDETGF-FTPADSHSGLITPGGFSSVPAGMETPELIELRKKKIEEAMD 704
Query: 273 TNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXX-XVKRTLPSSVELALDPS 331
NE PQLF VL E+R +G MMASTH+Y++ V VE+AL P
Sbjct: 705 GNETPQLFTVLPERRTGPVGAAMMASTHIYDMTTTVTSRKVGVSVLGGDSQGVEVALAPE 764
Query: 332 ELDLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAXXXXXXXXXXTTQDNKQAKKY 391
EL+L D AM +YE+ +REQ ++KED SDM+AEH A AKKY
Sbjct: 765 ELEL-DPMAMTQKYEEHVREQQ--VEKEDFSDMVAEHAAKQKQKKRKAQPQDTRGGAKKY 821
Query: 392 KEFKF 396
KEFKF
Sbjct: 822 KEFKF 826
Score = 39 (18.8 bits), Expect = 3.5e-46, Sum P(2) = 3.5e-46
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 69 KEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPW--LIAMQRY--GPPPSYPNLKI 124
K PG+ L T G+P P +PP + AM GPPP + ++
Sbjct: 55 KPNIPGE-DKSLTTMPGLPPMPPMPSM-----PLPPSMNMMQAMNMMVGGPPPIHMAMEP 108
Query: 125 PGL 127
PG+
Sbjct: 109 PGM 111
>FB|FBgn0031493 [details] [associations]
symbol:CG3605 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR007180 Pfam:PF04037 EMBL:AE014134 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0005686 eggNOG:COG5182
GeneTree:ENSGT00390000006734 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 OMA:KNERIGG EMBL:AY061487
RefSeq:NP_608739.1 UniGene:Dm.285 IntAct:Q9VQK7 MINT:MINT-761142
STRING:Q9VQK7 EnsemblMetazoa:FBtr0077669 GeneID:33514
KEGG:dme:Dmel_CG3605 UCSC:CG3605-RA FlyBase:FBgn0031493
InParanoid:Q9VQK7 OrthoDB:EOG40CFZ5 GenomeRNAi:33514 NextBio:783978
Uniprot:Q9VQK7
Length = 749
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 149/203 (73%), Positives = 164/203 (80%)
Query: 1 MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYE 60
MEMR SLQ++E+ KTLK+KMRERVRPK+GKIDIDYQKLHDAFFKWQTKPR++IHGDLYYE
Sbjct: 384 MEMRESLQEREDAKTLKAKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPRMTIHGDLYYE 443
Query: 61 GKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYP 120
GKEFET+LKEKKPGDLS ELR ALGMPVGP +HK IPPPWLIA QRYGPPPSYP
Sbjct: 444 GKEFETRLKEKKPGDLSEELRIALGMPVGPNSHK-------IPPPWLIAQQRYGPPPSYP 496
Query: 121 NLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPP-VDETG--KP 177
NLKIPGLNAPIP G SFGYHAGGWGKPPVDE GKPLYGDVFGT VDE +
Sbjct: 497 NLKIPGLNAPIPDGTSFGYHAGGWGKPPVDENGKPLYGDVFGTNILDLDNGVDEADIERN 556
Query: 178 LYGDVFGTSAETKTAEVNEEDIE 200
+G++ S E+ +E EED E
Sbjct: 557 QWGELESESEES--SEEEEEDGE 577
Score = 595 (214.5 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 131/243 (53%), Positives = 149/243 (61%)
Query: 158 GDVFG--TGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXX 215
G FG GGWGKPPVDE GKPLYGDVFGT+ V+E DIE+ W
Sbjct: 510 GTSFGYHAGGWGKPPVDENGKPLYGDVFGTNILDLDNGVDEADIERNQWGELESESEESS 569
Query: 216 XXXXXXXXXXXXXXXXXXXITPAEGLMTPSGITSVPAGLETPDSIELRKKKIESDMETNE 275
+TP EGL+TPSG+TSVPAG+ETP++IELRKKKIE++ME NE
Sbjct: 570 EEEEEDGEDLGDQQDETGLVTPVEGLVTPSGLTSVPAGMETPENIELRKKKIEAEMEDNE 629
Query: 276 APQLFQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPSS--VELALDPSEL 333
P L+QVL EKR D++G MM STH+Y+V V+ T VELALDPSEL
Sbjct: 630 TPVLYQVLPEKRTDRIGASMMGSTHVYDVSGSGANKQPP-VRSTTDREGIVELALDPSEL 688
Query: 334 DLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAXXXXXXXXXXTTQDNKQAKKYKE 393
DL D DAMA RYEQQMREQ + LQKEDLSDMLAEHVA T K KKYKE
Sbjct: 689 DL-DNDAMAQRYEQQMREQQNHLQKEDLSDMLAEHVARQKSKRKRQQT-DPAKTTKKYKE 746
Query: 394 FKF 396
FKF
Sbjct: 747 FKF 749
Score = 42 (19.8 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 9 DKEEQKTLKSKMRERVRPKLGKIDI 33
D EE+K K K+ +R KL ++ +
Sbjct: 288 DDEERKEDKEKLSKRKLKKLTRLSV 312
>WB|WBGene00021004 [details] [associations]
symbol:W03F9.10 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0018996 "molting cycle, collagen
and cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR007180 Pfam:PF04037 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0018996 GO:GO:0040011
GO:GO:0040035 eggNOG:COG5182 GeneTree:ENSGT00390000006734 KO:K12829
InterPro:IPR006568 Pfam:PF04046 SMART:SM00581 HOGENOM:HOG000159304
EMBL:FO081767 PIR:A88923 RefSeq:NP_503141.1
ProteinModelPortal:O16997 DIP:DIP-26706N IntAct:O16997
MINT:MINT-1108788 STRING:O16997 PaxDb:O16997
EnsemblMetazoa:W03F9.10.1 EnsemblMetazoa:W03F9.10.2 GeneID:178542
KEGG:cel:CELE_W03F9.10 UCSC:W03F9.10 CTD:178542 WormBase:W03F9.10
InParanoid:O16997 OMA:KNERIGG NextBio:901560 Uniprot:O16997
Length = 602
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 127/199 (63%), Positives = 154/199 (77%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
+MR +L +KEE ++LKSKMRER RPKLGKIDIDYQKLHDAFFKWQTKP ++ G+LYYEG
Sbjct: 233 DMREALLEKEESQSLKSKMRERARPKLGKIDIDYQKLHDAFFKWQTKPAMTKMGELYYEG 292
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KE E +++KKPG++S ELR ALGMP+G A K PPPWLIAMQRYGPPPS+P+
Sbjct: 293 KEMEAMMRDKKPGEMSDELRIALGMPIGSNAFK-------FPPPWLIAMQRYGPPPSFPH 345
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDETG--KPLY 179
+KIPGLNAPIP+GC+FGYHAGGWGKPPVDE G PLYGDVFG P DE+ + +
Sbjct: 346 IKIPGLNAPIPEGCAFGYHAGGWGKPPVDEYGHPLYGDVFGLAAPAFEPEDESQIERRYW 405
Query: 180 GDVFGTSAETKTAEVNEED 198
G++ G S E+ E +EE+
Sbjct: 406 GEI-G-SDESSDEEESEEE 422
Score = 350 (128.3 bits), Expect = 7.0e-34, Sum P(2) = 7.0e-34
Identities = 90/256 (35%), Positives = 128/256 (50%)
Query: 158 GDVFG--TGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXX 215
G FG GGWGKPPVDE G PLYGDVFG +A E +E IE+ W
Sbjct: 358 GCAFGYHAGGWGKPPVDEYGHPLYGDVFGLAAPAFEPE-DESQIERRYWGEIGSDESSDE 416
Query: 216 XXXXXXXXXXXXXXXXXXXI-TPA--EGLMTPSGITSVPAGLETPDSIELRKKKIESDME 272
TPA EG++TPSG+T+ G+ETPD+IELRK K S +
Sbjct: 417 EESEEEEHADDDDADVEGGFQTPAPVEGMITPSGMTTGITGIETPDTIELRKGKESSVLG 476
Query: 273 TNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPSSVELALDPSE 332
T+ + ++ EK+ +++G MMAS+H Y++ V+ V+++LDP
Sbjct: 477 TDTPAAAYHIIPEKKNERIGGQMMASSHTYDLSKKHA------VR---DDGVQISLDPES 527
Query: 333 LDLVDTDAMAARYEQQMREQT----SGLQKEDLSDMLAEHVAXXXXXXX--------XXX 380
+D+ D +AARYE+Q+R+Q +EDL+DM+AEH A
Sbjct: 528 IDM-DEQGLAARYEEQLRKQKHRDDDDEDREDLTDMVAEHAAKQNRKRKVQDDKKNKTSS 586
Query: 381 TTQDNKQAKKYKEFKF 396
++ KK+K+FKF
Sbjct: 587 SSSSGSSGKKHKDFKF 602
Score = 45 (20.9 bits), Expect = 7.0e-34, Sum P(2) = 7.0e-34
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKI 31
EM ++ E+K + K+R ++P + K+
Sbjct: 134 EMEERAKENTEEKLSRRKLRISLQPSIAKL 163
>UNIPROTKB|O16997 [details] [associations]
symbol:W03F9.10 "Protein W03F9.10" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007180 Pfam:PF04037 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0040035 eggNOG:COG5182
GeneTree:ENSGT00390000006734 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 HOGENOM:HOG000159304 EMBL:FO081767
PIR:A88923 RefSeq:NP_503141.1 ProteinModelPortal:O16997
DIP:DIP-26706N IntAct:O16997 MINT:MINT-1108788 STRING:O16997
PaxDb:O16997 EnsemblMetazoa:W03F9.10.1 EnsemblMetazoa:W03F9.10.2
GeneID:178542 KEGG:cel:CELE_W03F9.10 UCSC:W03F9.10 CTD:178542
WormBase:W03F9.10 InParanoid:O16997 OMA:KNERIGG NextBio:901560
Uniprot:O16997
Length = 602
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 127/199 (63%), Positives = 154/199 (77%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
+MR +L +KEE ++LKSKMRER RPKLGKIDIDYQKLHDAFFKWQTKP ++ G+LYYEG
Sbjct: 233 DMREALLEKEESQSLKSKMRERARPKLGKIDIDYQKLHDAFFKWQTKPAMTKMGELYYEG 292
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KE E +++KKPG++S ELR ALGMP+G A K PPPWLIAMQRYGPPPS+P+
Sbjct: 293 KEMEAMMRDKKPGEMSDELRIALGMPIGSNAFK-------FPPPWLIAMQRYGPPPSFPH 345
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDETG--KPLY 179
+KIPGLNAPIP+GC+FGYHAGGWGKPPVDE G PLYGDVFG P DE+ + +
Sbjct: 346 IKIPGLNAPIPEGCAFGYHAGGWGKPPVDEYGHPLYGDVFGLAAPAFEPEDESQIERRYW 405
Query: 180 GDVFGTSAETKTAEVNEED 198
G++ G S E+ E +EE+
Sbjct: 406 GEI-G-SDESSDEEESEEE 422
Score = 350 (128.3 bits), Expect = 7.0e-34, Sum P(2) = 7.0e-34
Identities = 90/256 (35%), Positives = 128/256 (50%)
Query: 158 GDVFG--TGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXX 215
G FG GGWGKPPVDE G PLYGDVFG +A E +E IE+ W
Sbjct: 358 GCAFGYHAGGWGKPPVDEYGHPLYGDVFGLAAPAFEPE-DESQIERRYWGEIGSDESSDE 416
Query: 216 XXXXXXXXXXXXXXXXXXXI-TPA--EGLMTPSGITSVPAGLETPDSIELRKKKIESDME 272
TPA EG++TPSG+T+ G+ETPD+IELRK K S +
Sbjct: 417 EESEEEEHADDDDADVEGGFQTPAPVEGMITPSGMTTGITGIETPDTIELRKGKESSVLG 476
Query: 273 TNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPSSVELALDPSE 332
T+ + ++ EK+ +++G MMAS+H Y++ V+ V+++LDP
Sbjct: 477 TDTPAAAYHIIPEKKNERIGGQMMASSHTYDLSKKHA------VR---DDGVQISLDPES 527
Query: 333 LDLVDTDAMAARYEQQMREQT----SGLQKEDLSDMLAEHVAXXXXXXX--------XXX 380
+D+ D +AARYE+Q+R+Q +EDL+DM+AEH A
Sbjct: 528 IDM-DEQGLAARYEEQLRKQKHRDDDDEDREDLTDMVAEHAAKQNRKRKVQDDKKNKTSS 586
Query: 381 TTQDNKQAKKYKEFKF 396
++ KK+K+FKF
Sbjct: 587 SSSSGSSGKKHKDFKF 602
Score = 45 (20.9 bits), Expect = 7.0e-34, Sum P(2) = 7.0e-34
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKI 31
EM ++ E+K + K+R ++P + K+
Sbjct: 134 EMEERAKENTEEKLSRRKLRISLQPSIAKL 163
>DICTYBASE|DDB_G0284555 [details] [associations]
symbol:sf3b2 "splicing factor 3B subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR007180 Pfam:PF04037
dictyBase:DDB_G0284555 GenomeReviews:CM000153_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003723 EMBL:AAFI02000066 eggNOG:COG5182
KO:K12829 InterPro:IPR006568 Pfam:PF04046 SMART:SM00581 OMA:KNERIGG
RefSeq:XP_001134544.1 STRING:Q1ZXF6 EnsemblProtists:DDB0233170
GeneID:8624627 KEGG:ddi:DDB_G0284555 InParanoid:Q1ZXF6
ProtClustDB:CLSZ2847453 Uniprot:Q1ZXF6
Length = 625
Score = 490 (177.5 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 94/159 (59%), Positives = 115/159 (72%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
++R ++ +KE++ K K RERV+PK+ K+ IDY+ L DAFF QTKP LSI GDLYYEG
Sbjct: 255 KIREAILEKEKEMKSKQKQRERVQPKIRKMGIDYEVLRDAFFVHQTKPNLSIQGDLYYEG 314
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFE LK KKPG LS EL+ ALGM G PPPWLI MQ YGPPPSYPN
Sbjct: 315 KEFEVNLKNKKPGVLSDELKRALGMIEG------------YPPPWLIYMQTYGPPPSYPN 362
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDV 160
LKIPG+N+PIP+G +G+H GGWG+P ++E GKPLY +V
Sbjct: 363 LKIPGVNSPIPEGAQYGFHPGGWGRPVLNEFGKPLYENV 401
Score = 154 (59.3 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 38/137 (27%), Positives = 69/137 (50%)
Query: 246 GITSVPAGLETPDSIELRKKKIESDMETNEA-P-QLFQVLTEKRPDKLGPGMMASTHMYE 303
GI+SVP+GLETPD + ++K + + + + P +L+QV+ ++ + G+M S H Y
Sbjct: 469 GISSVPSGLETPDIVNIKKSRYDQQQQQQQQQPRELYQVIEQQNKNSSSGGLMESAHRYN 528
Query: 304 VXXXXX----------XXXXXXVKRTLPSSVELALDPSELDL---VDTDAMAARYEQQMR 350
+ +K + VE+ L+PSE++ +D + + +YEQ +
Sbjct: 529 IPSVIKQQQQQQQQQNSSRVDVIKSQRSAPVEITLNPSEVENGQEIDEELLKKKYEQATQ 588
Query: 351 EQTSGLQKEDLSDMLAE 367
KED+SD++ E
Sbjct: 589 ALQKQRPKEDISDIIEE 605
Score = 80 (33.2 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 148 PVDETGKPLYGDVFGTGGWGKPPVDETGKPLYGDV 182
P+ E + YG F GGWG+P ++E GKPLY +V
Sbjct: 371 PIPEGAQ--YG--FHPGGWGRPVLNEFGKPLYENV 401
Score = 38 (18.4 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPK 27
E+ Q+++E+K K + E R K
Sbjct: 115 EIERKEQEEQEEKERKEREEEEERKK 140
>UNIPROTKB|G4NAE3 [details] [associations]
symbol:MGG_03182 "Splicing factor 3B subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR007180 Pfam:PF04037
GO:GO:0005634 EMBL:CM001234 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 RefSeq:XP_003716807.1
EnsemblFungi:MGG_03182T0 GeneID:2676555 KEGG:mgr:MGG_03182
Uniprot:G4NAE3
Length = 614
Score = 495 (179.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 105/213 (49%), Positives = 137/213 (64%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR ++ +K+ ++TLK K RERV PK+GK+DIDYQKL+DAFF++Q KP L+ GD+Y+EG
Sbjct: 221 EMRDAVLEKQAEQTLKQKQRERVAPKMGKLDIDYQKLYDAFFRFQEKPPLTRFGDVYHEG 280
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFE + KPG+LS L+ ALGM G PPPWL+ QR GPPPSYP
Sbjct: 281 KEFEADYRYFKPGELSDALKEALGMQPG------------FPPPWLLQQQRMGPPPSYPT 328
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYG-DVFG--TGG-WGKPPVDET--- 174
LKIPGLNAP+P G ++G+ G WGKPP+DE +P+YG D+FG G G P +T
Sbjct: 329 LKIPGLNAPLPNGAAWGFAPGQWGKPPLDEYNRPIYGGDIFGILAGNPAGAPGAQQTTGP 388
Query: 175 ---GKPLYGDVFGT---SAETKTAEVNEEDIEK 201
G+P+ ++G AE E EED E+
Sbjct: 389 AQAGEPVEKTLWGELQPPAEESEDEEEEEDEEE 421
Score = 101 (40.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 42/153 (27%), Positives = 73/153 (47%)
Query: 236 TPAEGLMTPSG----ITSVPA-GLETP--DSIELRKKKIESDMETNEA-PQ-LFQVLTEK 286
TP+ GL TP G +T + A G+E+ +LRK++ + E + A P+ + V+ E+
Sbjct: 435 TPS-GLETPGGYTTSVTEIGASGVESSMGGEFDLRKQRRGYETEESTAGPRSAYTVIPER 493
Query: 287 RPDKLGPGMMASTHMYEVXXXXXXX------XXXXVKRTLPSSVELALDPSEL---DLVD 337
+ G S +Y++ KR P V++ALDP L D +
Sbjct: 494 QAQ--ATGFFGSDRVYDLSKNQNKGPVLGQDDDSGRKRKKPGDVDVALDPDVLVGQDGIS 551
Query: 338 TDAMAARYEQQMREQTSGLQ---KEDLSDMLAE 367
D + ++E+ RE+ G + +DLS+M+A+
Sbjct: 552 KDELRRKFEEGRREEGPGAKWQYDDDLSEMIAQ 584
Score = 48 (22.0 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 240 GLMTPSGITSVPAGLETPDSIELRKKKIESDM 271
GL TPSG+ + P G T + E+ +ES M
Sbjct: 432 GLQTPSGLET-PGGYTTSVT-EIGASGVESSM 461
Score = 39 (18.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 250 VPAGLETPDSIE 261
+P GL+TP +E
Sbjct: 429 LPGGLQTPSGLE 440
>UNIPROTKB|H0YEX5 [details] [associations]
symbol:SF3B2 "Splicing factor 3B subunit 2" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] GO:GO:0005634 EMBL:AP006287
InterPro:IPR006568 Pfam:PF04046 SMART:SM00581 HGNC:HGNC:10769
PRIDE:H0YEX5 Ensembl:ENST00000530981 Bgee:H0YEX5 Uniprot:H0YEX5
Length = 315
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 106/156 (67%), Positives = 120/156 (76%)
Query: 48 KPRLSIHGDLYYEGKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWL 107
KP+L+IHGDLYYEGKEFET+LKEKKPGDLS ELR +LGMPVGP AHK +PPPWL
Sbjct: 2 KPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHK-------VPPPWL 54
Query: 108 IAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGG-- 165
IAMQRYGPPPSYPNLKIPGLN+PIP+ CSFGYHAGGWGKPPVDETGKPLYGDVFGT
Sbjct: 55 IAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAE 114
Query: 166 -WGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIE 200
K +E + +G++ + E+ E EE E
Sbjct: 115 FQTKTEEEEIDRTPWGELEPSDEESSEEEEEEESDE 150
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 108/239 (45%), Positives = 134/239 (56%)
Query: 161 FGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWXXXXXXXXXXXXXXXX 220
+ GGWGKPPVDETGKPLYGDVFGT+A + EE+I++T W
Sbjct: 86 YHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEEEEE 145
Query: 221 XXXXXXXXXXXXXXITPAE-GLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQL 279
ITPA+ GL+TP G +SVPAG+ETP+ IELRKKKIE M+ E PQL
Sbjct: 146 EESDEDKPDETGF-ITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMD-GETPQL 203
Query: 280 FQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXVKRTLPS--SVELALDPSELDLVD 337
F VL EKR +G MM STH+Y++ K P VE+AL P EL+L D
Sbjct: 204 FTVLPEKRTATVGGAMMGSTHIYDMSTVMSR------KGPAPELQGVEVALAPEELEL-D 256
Query: 338 TDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAXXXXXXXXXXTTQDNKQAKKYKEFKF 396
AM +YE+ +REQ + ++KED SDM+AEH A +KKYKEFKF
Sbjct: 257 PMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 315
>POMBASE|SPAC22F8.10c [details] [associations]
symbol:sap145 "U2 snRNP-associated protein Sap145
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005686 "U2
snRNP" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR007180 Pfam:PF04037 PomBase:SPAC22F8.10c GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
GO:GO:0000245 GO:GO:0005686 eggNOG:COG5182 KO:K12829
OrthoDB:EOG4VMJPZ InterPro:IPR006568 Pfam:PF04046 SMART:SM00581
PIR:T38200 RefSeq:NP_594733.1 IntAct:Q9UUI3 STRING:Q9UUI3
EnsemblFungi:SPAC22F8.10c.1 GeneID:2541609 KEGG:spo:SPAC22F8.10c
HOGENOM:HOG000159304 OMA:NAVHENE NextBio:20802703 Uniprot:Q9UUI3
Length = 601
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 109/199 (54%), Positives = 139/199 (69%)
Query: 1 MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYE 60
++MR ++ + E L+ KMRERV+PK+GK+DIDYQKLHDAFF++QTKP L+ G+ Y+E
Sbjct: 261 VQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDYQKLHDAFFRYQTKPVLTGFGECYFE 320
Query: 61 GKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYP 120
GKE E +KEK+PGD+S ELR ALG + P A PPPWL AMQRYGPPPSYP
Sbjct: 321 GKELEADVKEKRPGDISEELREALG--IAPGA----------PPPWLFAMQRYGPPPSYP 368
Query: 121 NLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDE-TGKPLY 179
+LKIPG+N PIP G +G+H GGWGKPPVD+ +PLYGDVFG KP + TG P+
Sbjct: 369 DLKIPGVNCPIPTGAQWGFHPGGWGKPPVDQFNRPLYGDVFGNV---KPRIHAGTGSPVS 425
Query: 180 GDVFGTSAETKTAEVNEED 198
+G E + E +EE+
Sbjct: 426 TQHWGELEEFEEEESSEEE 444
>ASPGD|ASPL0000031751 [details] [associations]
symbol:AN5098 species:162425 "Emericella nidulans"
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR007180 Pfam:PF04037 GO:GO:0005634
EMBL:BN001305 InterPro:IPR006568 Pfam:PF04046 SMART:SM00581
EnsemblFungi:CADANIAT00003081 OMA:LINQQRY Uniprot:C8VEV9
Length = 549
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 107/201 (53%), Positives = 141/201 (70%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR + +K+EQ TLK K RERV+PK+G++DIDYQKL++AFF++QTKP L+ +G++YYEG
Sbjct: 192 EMRDAALEKQEQATLKQKQRERVQPKMGRLDIDYQKLYEAFFRFQTKPELTRYGEVYYEG 251
Query: 62 KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
KEFET + +PG+LS+EL+ AL MP G PPPWLI QRYGPPPSYP
Sbjct: 252 KEFETNQRHLRPGELSSELKEALNMPPGA------------PPPWLINQQRYGPPPSYPA 299
Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYG-DVFGTGGWGKPPVDETGKPLYG 180
LKIPGLNAP P G +GYH GG+GKPPVDE +PLYG D+FG + G+P+
Sbjct: 300 LKIPGLNAPPPPGAMWGYHPGGYGKPPVDEHNRPLYGGDIFGV--LQPQQTMQQGEPVEK 357
Query: 181 DVFGTSAETKTAEVNEEDIEK 201
D++G E + ++ + ED E+
Sbjct: 358 DLWGELQEPELSDEDSEDEEE 378
Score = 160 (61.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 61/232 (26%), Positives = 100/232 (43%)
Query: 155 PLYGDVFG--TGGWGKPPVDETGKPLYG-DVFGTSAETKTAEVNEEDIEKTAWXXXXXXX 211
P G ++G GG+GKPPVDE +PLYG D+FG +T + E +EK W
Sbjct: 309 PPPGAMWGYHPGGYGKPPVDEHNRPLYGGDIFGVLQPQQTMQQGEP-VEKDLWGELQEPE 367
Query: 212 XXXXXXXXXXXXXXXXXXXXXXXITPAEGLMTPSGITS-VPAGLETPDSI--ELRKKKIE 268
TP+ G+ +PSG+ S VP+ L +++ E +K
Sbjct: 368 LSDEDSEDEEEELDEEDVDAGLQ-TPS-GMESPSGLVSAVPSELAGVENVSGEFDVRKHY 425
Query: 269 SDMETNEAPQ---LFQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXXXXV-----KRTL 320
+T E+ + ++ E++ + G Y++ KR
Sbjct: 426 QGTQTEESADRRSAYHIIPERQTEV--QGFFGGDRAYDLRPATDSLPVLGTEDQTRKRKK 483
Query: 321 PSSVELALDPSEL---DLVDTDAMAARYEQQMREQTSGLQ---KEDLSDMLA 366
P V+++++P ++ D + D + YE Q R+Q S +EDLSDM+A
Sbjct: 484 PGDVDVSVNPDDMQSEDGISKDNLQRLYESQ-RQQESNPNWEFQEDLSDMIA 534
>RGD|1307159 [details] [associations]
symbol:Sf3b2 "splicing factor 3b, subunit 2" species:10116
"Rattus norvegicus" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] RGD:1307159 GO:GO:0071013 GO:GO:0005689 EMBL:CH473953
IPI:IPI00952297 UniGene:Rn.103341 Ensembl:ENSRNOT00000067303
UCSC:RGD:1307159 Uniprot:D4A9C1
Length = 138
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 66/145 (45%), Positives = 84/145 (57%)
Query: 254 LETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVXXXXXXXXX 313
+ETP+ IELRKKKIE M+ +E PQLF VL EKR +G MM STH+Y++
Sbjct: 1 METPELIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSR--- 57
Query: 314 XXVKRTLPS--SVELALDPSELDLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVAX 371
K P VE+AL P EL+L D AM +YE+ +REQ + ++KED SDM+AEH A
Sbjct: 58 ---KGPAPELQGVEVALAPEELEL-DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAK 113
Query: 372 XXXXXXXXXTTQDNKQAKKYKEFKF 396
+KKYKEFKF
Sbjct: 114 QKQKKRKAQPQDSRGGSKKYKEFKF 138
>CGD|CAL0000205 [details] [associations]
symbol:orf19.7581 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
InterPro:IPR007180 Pfam:PF04037 CGD:CAL0000205 GO:GO:0005634
EMBL:AACQ01000032 eggNOG:COG5182 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 HOGENOM:HOG000159304 RefSeq:XP_719343.1
STRING:Q5ACR1 GeneID:3639035 KEGG:cal:CaO19.7581 Uniprot:Q5ACR1
Length = 471
Score = 265 (98.3 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 58/131 (44%), Positives = 84/131 (64%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR+ +D +TL+ + RE+V+PK+GK+D+DY+KL+ AF K+Q KPR+ +G+L+ EG
Sbjct: 203 EMRSGGRD---HRTLRQQQREKVQPKMGKLDMDYEKLYQAFSKFQIKPRVFPYGELFEEG 259
Query: 62 K----EFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPP 117
K E TK + KPG +S E+R+AL MP + IPP W+ M+ G PP
Sbjct: 260 KHSNDELVTKAAKIKPGIISLEMRSALSMP---------QNDGTIPPAWVTIMRDIGKPP 310
Query: 118 SYPNLKIPGLN 128
SY +L IPGL+
Sbjct: 311 SYKDLVIPGLD 321
>UNIPROTKB|Q5ACR1 [details] [associations]
symbol:CUS1 "Potential spliceosomal U2 snRNP protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR007180 Pfam:PF04037
CGD:CAL0000205 GO:GO:0005634 EMBL:AACQ01000032 eggNOG:COG5182
KO:K12829 InterPro:IPR006568 Pfam:PF04046 SMART:SM00581
HOGENOM:HOG000159304 RefSeq:XP_719343.1 STRING:Q5ACR1
GeneID:3639035 KEGG:cal:CaO19.7581 Uniprot:Q5ACR1
Length = 471
Score = 265 (98.3 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 58/131 (44%), Positives = 84/131 (64%)
Query: 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
EMR+ +D +TL+ + RE+V+PK+GK+D+DY+KL+ AF K+Q KPR+ +G+L+ EG
Sbjct: 203 EMRSGGRD---HRTLRQQQREKVQPKMGKLDMDYEKLYQAFSKFQIKPRVFPYGELFEEG 259
Query: 62 K----EFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPP 117
K E TK + KPG +S E+R+AL MP + IPP W+ M+ G PP
Sbjct: 260 KHSNDELVTKAAKIKPGIISLEMRSALSMP---------QNDGTIPPAWVTIMRDIGKPP 310
Query: 118 SYPNLKIPGLN 128
SY +L IPGL+
Sbjct: 311 SYKDLVIPGLD 321
>SGD|S000004853 [details] [associations]
symbol:CUS1 "Protein required for assembly of U2 snRNP into
the spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0005686 "U2 snRNP" evidence=IDA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IPI] [GO:0071004 "U2-type prespliceosome" evidence=IDA]
InterPro:IPR007180 InterPro:IPR027203 Pfam:PF04037 SGD:S000004853
GO:GO:0003723 EMBL:BK006946 GO:GO:0000245 GO:GO:0005686
GO:GO:0071004 EMBL:Z48756 EMBL:U27016 EMBL:AY723856 PIR:S56054
RefSeq:NP_013967.1 ProteinModelPortal:Q02554 DIP:DIP-910N
IntAct:Q02554 MINT:MINT-474095 STRING:Q02554 PaxDb:Q02554
EnsemblFungi:YMR240C GeneID:855281 KEGG:sce:YMR240C CYGD:YMR240c
eggNOG:COG5182 GeneTree:ENSGT00390000006734 HOGENOM:HOG000000768
KO:K12829 OMA:VEWYDVD OrthoDB:EOG4VMJPZ NextBio:978914
Genevestigator:Q02554 GermOnline:YMR240C InterPro:IPR006568
PANTHER:PTHR12785:SF4 Pfam:PF04046 SMART:SM00581 Uniprot:Q02554
Length = 436
Score = 228 (85.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 58/142 (40%), Positives = 79/142 (55%)
Query: 2 EMRASLQ----DKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFK----WQTKP-RLS 52
+MR++L D +++K+LK R RV+PK+G +D+DY+KLHD FFK W KP L
Sbjct: 207 QMRSTLPQSGLDGQDEKSLKEASRARVQPKMGALDLDYKKLHDVFFKIGANW--KPDHLL 264
Query: 53 IHGDLYYEGKEF--ETKLKE----KKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPW 106
GD+YYE + ET K K+PG +S ELR + +P G PPW
Sbjct: 265 CFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRAIMNLPEGQL------------PPW 312
Query: 107 LIAMQRYGPPPSYPNLKIPGLN 128
+ M+ G P YP+LKI GLN
Sbjct: 313 CMKMKDIGLPTGYPDLKIAGLN 334
>TAIR|locus:2200126 [details] [associations]
symbol:AT1G11520 "AT1G11520" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 eggNOG:COG5182
EMBL:AC011661 IPI:IPI00545648 RefSeq:NP_172619.1 UniGene:At.22888
UniGene:At.51571 EnsemblPlants:AT1G11520.1 GeneID:837695
KEGG:ath:AT1G11520 TAIR:At1g11520 PhylomeDB:Q9LPY3
Genevestigator:Q9LPY3 Uniprot:Q9LPY3
Length = 196
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 35/111 (31%), Positives = 54/111 (48%)
Query: 247 ITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPG-MMASTHMYEVX 305
++S P G+ETPD+IELRK E E + A L+QVL EK + PG ++ +TH Y +
Sbjct: 93 LSSTPTGIETPDAIELRK---EQRKEPDRA--LYQVLEEKGESVVAPGTLLRTTHTYVIK 147
Query: 306 XXXXXXXXXX----VKRTLPSSVELALDPSELDLVDTDAMAARYEQQMREQ 352
++ V+ +L P ELD + +YE+ E+
Sbjct: 148 TGTQDKTGTKRVDLLRGQKTDRVDFSLQPEELDAMGN---VLQYEEAREEE 195
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.132 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 396 345 0.00097 116 3 11 23 0.49 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 604 (64 KB)
Total size of DFA: 220 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 31.02u 0.09s 31.11t Elapsed: 00:00:21
Total cpu time: 31.02u 0.09s 31.11t Elapsed: 00:00:22
Start: Thu Aug 15 13:57:43 2013 End: Thu Aug 15 13:58:05 2013