RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12225
(396 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 8e-05
Identities = 59/492 (11%), Positives = 122/492 (24%), Gaps = 138/492 (28%)
Query: 1 MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYE 60
M+ + + L + D + + D K LS
Sbjct: 7 MDFETGEHQYQYKDIL-----SVFEDAFVD-NFDCKDVQDM-----PKSILS-------- 47
Query: 61 GKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPP--PWLIAMQRYGPPPS 118
+E + + K + L L + + F E V+ +L M
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFV-EEVLRINYKFL--MSPIKTEQR 103
Query: 119 YPNL----------KIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGD-------VF 161
P++ ++ N + Y+ P + + L +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAK-----YNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 162 GTGGWGKPPV-------DETGKPLYGDVF-GTSAETKTAEVNEEDIEKTAWGELESESEE 213
G G GK V + + +F + E E ++K +++
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTS 215
Query: 214 ESEEDDEEEEEEEEGEDE-SGLITPAEG-------------------------LMTPSGI 247
S+ + + E L+ L+T +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-TRF 274
Query: 248 TSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVPGA 307
V L + + + +E L + RP L P + +T+ +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSII 333
Query: 308 GASAPGAP-------------VKRTLPSSVELALDPSEL-----DLV----DTDAMAARY 345
S + + SS+ L+P+E L
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 346 E---QQMREQTSGLQKEDLSDMLAE-H----VARQKNKRK--------RQQTTQDNKQAK 389
+ + D+ ++ + H V +Q + + +N+ A
Sbjct: 393 SLIWFDVIK-------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 390 ------KYKEFK 395
Y K
Sbjct: 446 HRSIVDHYNIPK 457
Score = 37.9 bits (87), Expect = 0.006
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 43/110 (39%)
Query: 36 QKLHD--AFFKWQTKPRLSIHGDLYYEGKEFETKLKEKKPGDLSAELRTALGMPVGPTAH 93
KLH K + +SI +Y L+ K + L H
Sbjct: 409 NKLHKYSLVEKQPKESTISIP-SIY---------LELKVKLENEYAL------------H 446
Query: 94 KTFSRETVIPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPQG--CSF-GYH 140
++ + Y P ++ + L P S G+H
Sbjct: 447 RSI-------------VDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHH 480
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.007
Identities = 54/293 (18%), Positives = 82/293 (27%), Gaps = 113/293 (38%)
Query: 139 YHAGGWGKPPVD-----------ETGK-PLYGDVFGTG-GWGKPPVDE------TGKPLY 179
A K P D G L +FG G G +E T L
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IFG-GQGNTDDYFEELRDLYQTYHVLV 184
Query: 180 GDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGED-ESGLITPA 238
GD+ SAET L E + E+ +G + L P+
Sbjct: 185 GDLIKFSAET-----------------L----SELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 239 EGLMTPSG--ITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMM 296
TP + S+P P I + QL + + PG +
Sbjct: 224 N---TPDKDYLLSIPISC--P-LIGVI--------------QLAHYVVTAKLLGFTPGEL 263
Query: 297 ------ASTHMYEVPGAGASAP---------------------GAPVKRTLPSSVELALD 329
A+ H + A A A G P++ +L
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT---SLP 320
Query: 330 PSEL-DLVDTDA-----MAARYEQQMREQTSGLQKEDLSDMLAE---HVARQK 373
PS L D ++ + M + S L +E + D + + H+ K
Sbjct: 321 PSILEDSLENNEGVPSPMLS---------ISNLTQEQVQDYVNKTNSHLPAGK 364
Score = 33.5 bits (76), Expect = 0.13
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 34/132 (25%)
Query: 247 ITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLG----PGMMA---ST 299
++ P L + + LRK K S ++ + P F +R K P + + S
Sbjct: 379 VSGPPQSLYGLN-LTLRKAKAPSGLDQSRIP--F----SERKLKFSNRFLP-VASPFHSH 430
Query: 300 HMYEVPGAGASAPGAPVKRTLPSSVELALDPSELDL-V-DT-DAMAARYEQQMREQTSGL 356
+ AS + + L + ++ + ++ + V DT D +R + +
Sbjct: 431 LL-----VPAS---DLINKDLVKN-NVSFNAKDIQIPVYDTFDG------SDLRVLSGSI 475
Query: 357 QKEDLSDMLAEH 368
E + D +
Sbjct: 476 -SERIVDCIIRL 486
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 33.7 bits (76), Expect = 0.043
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 186 SAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGED 230
E K AE E++ E E E E E++ ++DDE+EEEEEE D
Sbjct: 31 QHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD 75
Score = 32.6 bits (73), Expect = 0.10
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 184 GTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDES 232
+AE E +EE + E E+ E+E E++DE+++++++ ++E
Sbjct: 21 VAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEE 69
Score = 31.0 bits (69), Expect = 0.28
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 171 VDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGED 230
+ T P+ E + E + ++ G+ + + +E+ ++DD+++E+EEE E+
Sbjct: 13 LKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 30.6 bits (68), Expect = 0.44
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 188 ETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDE 231
+ + E + E+ + + +E+ +EDD+++++E+E E+E
Sbjct: 28 DNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEE 71
Score = 29.1 bits (64), Expect = 1.5
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 182 VFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDE 231
V + + + E+ E E + +E+ +ED++++++++E E+E
Sbjct: 20 VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEE 69
Score = 28.7 bits (63), Expect = 1.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 181 DVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDE 231
+ NE+ EK A GE + E + +ED++E+E++++ +DE
Sbjct: 15 ITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDE 65
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.047
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 185 TSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEE 227
A+ T E E I K W E E + +E D + E+
Sbjct: 75 AQADRLTQE--PESIRK--WRE---EQRKRLQELDAASKVMEQ 110
Score = 33.2 bits (75), Expect = 0.089
Identities = 6/50 (12%), Positives = 22/50 (44%)
Query: 186 SAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLI 235
S + + + W + +SE E+++ ++ ++ + ++ +I
Sbjct: 105 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 32.5 bits (73), Expect = 0.20
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 188 ETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDE 231
E + E + E T + ++ SE++++ DD EE +++ +D+
Sbjct: 294 ELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDD 337
Score = 31.4 bits (70), Expect = 0.47
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 184 GTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGE 229
G A+ T E ++ + TA + + E DD+++++E+ G+
Sbjct: 297 GVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGD 342
Score = 31.0 bits (69), Expect = 0.68
Identities = 5/44 (11%), Positives = 17/44 (38%)
Query: 187 AETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGED 230
+ EE + + + + +E ++++++ ED
Sbjct: 296 QGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDED 339
Score = 30.2 bits (67), Expect = 1.2
Identities = 7/55 (12%), Positives = 25/55 (45%)
Query: 174 TGKPLYGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEG 228
+ + E +D + E ++++++ +EE D++++++E+
Sbjct: 286 DDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDA 340
Score = 30.2 bits (67), Expect = 1.3
Identities = 3/48 (6%), Positives = 19/48 (39%)
Query: 187 AETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGL 234
E ++ E +++ + ++ +++++++ + L
Sbjct: 297 GVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGDAL 344
Score = 29.0 bits (64), Expect = 2.6
Identities = 10/57 (17%), Positives = 25/57 (43%)
Query: 172 DETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEG 228
DE P T+ +++D + ++ EE+++DD+++E+ +
Sbjct: 287 DEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGDA 343
Score = 27.1 bits (59), Expect = 9.8
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 185 TSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESG 233
E E+ + + + + ++ + EDD + ++ E D+
Sbjct: 286 DDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDD 334
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 31.9 bits (73), Expect = 0.28
Identities = 11/47 (23%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 185 TSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDE 231
T + + ++ E+I+K +++ + EE+++++E EE +E ++E
Sbjct: 219 TVKDAQFKKIPVEEIKK-LIEKVKKKLNEENKKEEENREETKEKQEE 264
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.29
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 285 EKRP-DKLGPGMMASTHMYEVPGAGASAPGAPVKRTL 320
EK+ KL AS +Y SAP +K T+
Sbjct: 18 EKQALKKL----QASLKLYA-DD---SAPALAIKATM 46
Score = 27.2 bits (59), Expect = 7.4
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 109 AMQRYGPPPSYPNLKIPGLNAPI 131
+++ Y S P L I A +
Sbjct: 28 SLKLYADD-SAPALAI---KATM 46
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 32.2 bits (72), Expect = 0.30
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 191 TAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAE 239
T E + E+ E E EEE ++ E+++ E E++ E
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPE 409
Score = 28.8 bits (63), Expect = 3.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 195 NEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAE 239
EED E+ E E E ++ EDD+ E EE+ + E
Sbjct: 369 FEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPE 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 31.7 bits (71), Expect = 0.35
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 15 TLKSKMRERVRPKLGKIDIDY-QKLHDAFFKWQTKPRLSIHGDLYYEGK 62
T ++ R R + I ++Y +KLH W L + D E
Sbjct: 187 TCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVP 235
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 32.1 bits (73), Expect = 0.45
Identities = 19/204 (9%), Positives = 44/204 (21%), Gaps = 14/204 (6%)
Query: 201 KTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAEGLMTPSGITSVPAGLETPDSI 260
K A + + D+E E ++ L + L+ L
Sbjct: 138 KGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVS 197
Query: 261 ELRKKKIESDMETNEAPQLFQVLTEKR--------PDKLGPGMMASTHMYEVPGAGASAP 312
L + + + R + PG + +
Sbjct: 198 RLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEG 257
Query: 313 GAPVKRTLPSSVELALDPSELDLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVARQ 372
+K + + E + E + LAE
Sbjct: 258 VVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGE------IVEKGQPLAEAKGLL 311
Query: 373 KNKRKRQQTTQDNKQAKKYKEFKF 396
+ R+ + + ++ +
Sbjct: 312 RMPRQVRAAQVEAEEEGETVYLTL 335
Score = 27.4 bits (61), Expect = 9.7
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 184 GTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGED 230
G+ T V+++ ++ E+ +E + E+ G+
Sbjct: 1477 GSDFVRFTQVVDQKTLKAIEEARKEAVEAKERPAARRGVKREQPGKQ 1523
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 31.2 bits (71), Expect = 0.59
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 194 VNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAEG 240
V + ++ E +++E DD+E+E++ + S
Sbjct: 231 VKGDLLQ-----EAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVA 272
Score = 30.4 bits (69), Expect = 0.95
Identities = 8/56 (14%), Positives = 22/56 (39%)
Query: 182 VFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITP 237
S + + D+ + A + E + +ED+++ + +DE+ +
Sbjct: 218 WCSLSETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVAT 273
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 30.8 bits (70), Expect = 0.59
Identities = 8/38 (21%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 194 VNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDE 231
+ ++++E+ ++ EEE++ + E++E+E++ +D+
Sbjct: 228 LKQKEVEQ----LIKKHEEEEAKAEREKKEKEQKEKDK 261
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 30.9 bits (70), Expect = 0.59
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 182 VFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESG 233
V + E + + SEE +E E + EE + E+
Sbjct: 171 VLPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEAS 222
Score = 30.5 bits (69), Expect = 0.79
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 186 SAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESG 233
+ + A E +E E D EE + E +++
Sbjct: 179 EELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNA 226
Score = 28.9 bits (65), Expect = 2.3
Identities = 6/33 (18%), Positives = 7/33 (21%)
Query: 208 ESESEEESEEDDEEEEEEEEGEDESGLITPAEG 240
E E E + E EG
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEG 210
>4f88_1 Plyca; lysin, bacteriophage, antimicrobial protein, viral protein;
3.30A {Streptococcus phage C1}
Length = 465
Score = 30.7 bits (68), Expect = 0.86
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 115 PPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDET 174
P ++ ++ IP A ++ Y G P+ G P + G P T
Sbjct: 144 PGRTWGDVMIPSTMAGNAWVWAYNYCVNNQGAAPLVYFGNPYDSQIDSLLAMGADP--FT 201
Query: 175 GKPLYGDVFGTSAETKTA------EVNEEDIEKTAWGELESESEEESEE 217
G + GD S T A E N E ++K + E S E
Sbjct: 202 GGSITGDGKNPSVGTGNATVSASSEANREKLKKALTDLFNNNLEHLSGE 250
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 30.5 bits (69), Expect = 1.00
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 206 ELESESEEESEEDDEEEEEEEEGEDE 231
EL+ E EE+++EEEE E E
Sbjct: 339 ELDDMEELTDEEEEDEEEEAESQSPE 364
Score = 30.5 bits (69), Expect = 1.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 203 AWGELESESEEESEEDDEEEEEEEEGEDESGLITP 237
G E + ++ EE +EEEE+EE E ES P
Sbjct: 331 TRGRGELDELDDMEELTDEEEEDEEEEAESQSPEP 365
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 30.1 bits (69), Expect = 1.2
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 210 ESEEESEEDDEEEEEEEEGEDESGL 234
E + + +E ++ E +S L
Sbjct: 268 ELKLQELSAEERQKYLEANMTQSAL 292
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 30.3 bits (67), Expect = 1.2
Identities = 20/147 (13%), Positives = 39/147 (26%)
Query: 185 TSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAEGLMTP 244
T++ET + NE +TA ++ EE++ E E E
Sbjct: 70 TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ 129
Query: 245 SGITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTHMYEV 304
+ A + ++ F E + G + + V
Sbjct: 130 GDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSV 189
Query: 305 PGAGASAPGAPVKRTLPSSVELALDPS 331
A ++ + AL +
Sbjct: 190 VLASRRTGHLVNEKASKEAKVQALSNT 216
Score = 29.5 bits (65), Expect = 2.1
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 4/108 (3%)
Query: 186 SAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAEGLMTPS 245
T + + E E+ S + EE E E + P T +
Sbjct: 67 GVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEA----KPKSDKETEA 122
Query: 246 GITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGP 293
+ G E+ + E K + E + + + E + +
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEE 170
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 29.8 bits (66), Expect = 1.3
Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 103 PPPWLIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYH-AGGWGKPPVDETGKPL----Y 157
P RY P + G P G +G GGWG+P G+P +
Sbjct: 20 PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGW 79
Query: 158 GDVFGTGGWGKPPVDETGKPLYGDVFGTSA 187
G G W KP +T A
Sbjct: 80 GQGGTHGQWNKPSKPKTNMKHVAGAAAAGA 109
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 29.7 bits (67), Expect = 1.8
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 206 ELESESE--EESEEDDEEEEEEEEGEDES 232
+L SE + +++ D++ E EEEEGEDE+
Sbjct: 417 DLVSEYQQYQDATADEQGEFEEEEGEDEA 445
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 189 TKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEE 227
+KT V E E+ A E + +S++E+ ++EEEE++ +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
Score = 28.7 bits (65), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 204 WGELESESEEESEEDDEEEEEEEEGEDE 231
W EE EE++ +EE+E+ +DE
Sbjct: 214 WSSKTETVEEPMEEEEAAKEEKEDSDDE 241
Score = 27.9 bits (63), Expect = 6.1
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 188 ETKTAEVNEEDIEKTAWGELESESEEESEED-DEEEEEEEE 227
+T+T E E+ E + +S+ E EE+ +E++ + ++
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 29.5 bits (67), Expect = 2.2
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 216 EEDDEEEEEEEEGEDESGLITPAEG 240
+E E+ +E + PAEG
Sbjct: 346 ASLEEPEDVVDEAVAITSDAPPAEG 370
Score = 28.0 bits (63), Expect = 5.2
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 208 ESESEEESEEDDEEEEEEEEGEDE 231
S E E D+ + E
Sbjct: 346 ASLEEPEDVVDEAVAITSDAPPAE 369
Score = 27.6 bits (62), Expect = 8.3
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 207 LESESEEESEEDDEEEEEEEEGEDESG 233
L++ EE + DE + G
Sbjct: 344 LDASLEEPEDVVDEAVAITSDAPPAEG 370
>1oei_A Major prion protein; octapeptide repeats, structure, protein
aggregation, PH-dependent conformation, brain, disease
mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Length = 26
Score = 25.8 bits (56), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 140 HAGGWGKPPVDETGKPLYGDVFGTGGWGKP 169
H GGWG+P G+P GGWG+P
Sbjct: 1 HGGGWGQPHGGGWGQP------HGGGWGQP 24
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 28.5 bits (64), Expect = 2.8
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 208 ESESEEESEEDDEEEEEEEEGEDES 232
+ EE+ + E E ++G++E
Sbjct: 180 VEKLAEEAAAEVAEPEVIKKGKEEE 204
Score = 26.9 bits (60), Expect = 9.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 206 ELESESEEESEEDDEEEEEEEEGEDES 232
++E +EE + E E E ++ E+E
Sbjct: 179 DVEKLAEEAAAEVAEPEVIKKGKEEEE 205
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 29.0 bits (65), Expect = 3.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 207 LESESEEESEEDDEEEEEEEEGEDES 232
LESE + SEE EE E +
Sbjct: 8 LESEDDYGSEEALSEENVHEASANPQ 33
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.5 bits (63), Expect = 3.1
Identities = 1/53 (1%), Positives = 9/53 (16%), Gaps = 2/53 (3%)
Query: 189 TKTAEVNEEDIEKTAWGEL--ESESEEESEEDDEEEEEEEEGEDESGLITPAE 239
+ + + + + ++ E +
Sbjct: 95 ERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGN 147
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB:
2e5t_A 2e5u_A
Length = 133
Score = 27.7 bits (62), Expect = 3.6
Identities = 8/55 (14%), Positives = 21/55 (38%)
Query: 324 VELALDPSELDLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVARQKNKRKR 378
+ A ++D++ A R E++++ Q + + L + R +
Sbjct: 79 AQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRLSVAEMK 133
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native,
oxidoredu; HET: PQQ; 1.50A {Methylophilus
methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A*
4aah_A* 1g72_A*
Length = 571
Score = 28.8 bits (64), Expect = 3.8
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 151 ETGKPLYGDVFGTGGWGKPPVD-ETGKPLYGDVFGTSAETKTAEV 194
E G + + VD +TG P+ F T + K +
Sbjct: 334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase,
isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Length = 327
Score = 28.3 bits (64), Expect = 5.2
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 215 SEEDDEEEEEEEEGEDESG 233
+EE ++ + G D++G
Sbjct: 308 AEESGDDNAVDANGADQTG 326
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 28.4 bits (64), Expect = 5.2
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 208 ESESEEESEEDDEEEEEEEEGEDESGLITPAEGL 241
++ EE+ ++ E +E+E P +GL
Sbjct: 1232 TLKAIEEARKEAVEAKEKEAPRRPVRREQPGKGL 1265
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 27.8 bits (63), Expect = 6.1
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 212 EEE-SEEDDEEEEE--EEEGEDESGL 234
E E +E DDEE+ E ++ G +E GL
Sbjct: 241 ESEIAELDDEEKVEFLQDLGIEEPGL 266
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J
1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Length = 138
Score = 26.9 bits (60), Expect = 6.1
Identities = 8/57 (14%), Positives = 21/57 (36%)
Query: 324 VELALDPSELDLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVARQKNKRKRQQ 380
+ A+ +LD + E+ + + S LA+ +A+ + ++
Sbjct: 80 ADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTKK 136
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 27.8 bits (61), Expect = 6.2
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 206 ELESESEEESEEDDEEEEEEEEGEDESGLITPAEG 240
E E S + D E+++ GE + L
Sbjct: 224 EDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPS 258
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 27.5 bits (61), Expect = 6.3
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 184 GTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESG 233
G ++ + EV + +E +E EE+ E EE+ E + G
Sbjct: 183 GELSKDEEWEVMVDLFYHKT--LPTAEQKEAEEEEGAEGAEEKVAEVKEG 230
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 27.8 bits (63), Expect = 6.4
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 212 EEE-SEEDDEEEEE--EEEGEDESGL 234
E E +E EE E G ESGL
Sbjct: 246 EAELAELSGEEARELLAAYGLQESGL 271
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 27.4 bits (61), Expect = 6.7
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 188 ETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDES 232
+ A +E + E+ E + EEES EE EE + +
Sbjct: 8 VMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPA 52
>1nvp_C Transcription initiation factor IIA beta chain; transcription
regulation, DNA, complex, transcription/DNA complex;
2.10A {Homo sapiens} SCOP: b.56.1.1
Length = 76
Score = 26.1 bits (57), Expect = 6.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 208 ESESEEESEEDDEEEEEEEEGEDESGLI 235
+ E E + EDD +EE +E D ++
Sbjct: 8 QVEEEPLNSEDDVSDEEGQELFDTENVV 35
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.9 bits (61), Expect = 7.1
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 193 EVNEEDIEKTAWGELESESEEESEEDDEEEEEEEE 227
++ + E A+ E E E+ + + + + +EE
Sbjct: 368 DILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEE 402
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 27.9 bits (61), Expect = 7.3
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 183 FGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESG 233
F E + A + EE + + ++E +DD EE++ G ESG
Sbjct: 449 FVQDPEEELARIEEEMNQYAE--MQGNLLDDEGGDDDLEEDDPNAGAAESG 497
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 27.8 bits (62), Expect = 8.0
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 206 ELESESEEESEEDDEEEEEEEEGEDES 232
EL + E + + ++ G+
Sbjct: 422 ELVQSYQVAEESGAKAKVQDSAGDTGM 448
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 27.9 bits (62), Expect = 8.3
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 1 MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKP----RLSIHGD 56
+E + KE Q +R + L K I Y L + L GD
Sbjct: 22 LEADYDKKLKESQTQDNITVRWDLG--LNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGD 79
Query: 57 L--YYEGKEFETKLKEKKPGDLSAELRTALGMPVGPT----AHKTFSRET 100
L ++G K+ + +++ ELR+++G PV T + +
Sbjct: 80 LAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTS 129
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 8.4
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 23/133 (17%)
Query: 184 GTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAEGLMT 243
+ + NE +E+T E+ES+ + + + + I P G +
Sbjct: 1275 AEE--IPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRD----PRIAPLRGALA 1328
Query: 244 PSGITSVPAGLETPDSIELRKKKIESDM--ETNEAPQLFQVLTEKRPDKLGPGMMAST-- 299
G+ T D + + S + NE+ + +++ + P +
Sbjct: 1329 TYGL--------TIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKF 1380
Query: 300 ---HMYEVPGAGA 309
H AGA
Sbjct: 1381 LTGHP--KGAAGA 1391
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative,
northeast structural genomics consortium, NESG, HR5546A,
LMNB1_human; 2.39A {Homo sapiens}
Length = 144
Score = 26.6 bits (58), Expect = 9.9
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 162 GTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEE 221
G PP D K + +GT + K N + E A ++ EE++EE
Sbjct: 88 NAGVTASPPTDLIWKNQ--NSWGTGEDVKVILKNSQGEEV-AQRSTVFKTTIPEEEEEEE 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.130 0.376
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,157,150
Number of extensions: 388541
Number of successful extensions: 1529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 153
Length of query: 396
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,021,377
Effective search space: 1206413100
Effective search space used: 1206413100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.8 bits)