RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12225
         (396 letters)



>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme disease
           spirochete (Borrelia burgdorferi) [TaxId: 139]}
          Length = 291

 Score = 31.3 bits (71), Expect = 0.17
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 178 LYGDVFGTSAETKTAEVNE--EDIEKT---AWGELESESEEESEEDDEEEEEEEEGEDES 232
           L  + FG  ++ K ++V      +         +L S  +E+S+      + +  G   +
Sbjct: 3   LVAEAFGFKSDPKKSDVKTYFTTVAAKLEKTKTDLNSLPKEKSDISSTTGKPDSTGSVGT 62


>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
           molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 116

 Score = 28.0 bits (62), Expect = 0.86
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 205 GELESESEEESEEDDEEEEEEEEGEDESGLITPAEGLMTPSGITSVPA 252
           G  E E  +    + +EEEEE +G+++          + P G    PA
Sbjct: 42  GGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPA 89


>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 121

 Score = 25.6 bits (56), Expect = 5.8
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 346 EQQMREQTSGLQKEDLSDMLAEHVARQKNKRKRQQTTQDNKQAKKYKEFK 395
           +  + + T+    +DL  + A+    Q +     Q ++ N+      E  
Sbjct: 1   KLDLHQMTT----QDLVALFAKVTVEQDDALLGNQISRFNRLFGVMAEIA 46


>d1outb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Trout (Oncorhynchus
           mykiss) [TaxId: 8022]}
          Length = 146

 Score = 25.8 bits (56), Expect = 6.2
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 166 WGKPPVDETGKPLYGDVFGTSAETKT 191
           WGK  +DE G      V      T+ 
Sbjct: 15  WGKVNIDEIGPLALARVLIVYPWTQR 40


>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 209

 Score = 26.1 bits (57), Expect = 7.6
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 191 TAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDE 231
             +V  E I  T           + EE+  + ++ EE E E
Sbjct: 48  VRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPE 88


>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 25.2 bits (55), Expect = 7.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 209 SESEEESEEDDEEEEEEEEGEDE 231
           S++E+  + DD ++ EE+EG D+
Sbjct: 2   SDNEDNFDGDDFDDVEEDEGLDD 24



 Score = 25.2 bits (55), Expect = 8.2
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 211 SEEESEEDDEEEEEEEEGEDESGLITPAE 239
           S+ E   D ++ ++ EE E    L    E
Sbjct: 2   SDNEDNFDGDDFDDVEEDEGLDDLENAEE 30


>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 197

 Score = 25.6 bits (56), Expect = 8.2
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 183 FGTSAETKTAEVNEEDIEKTAW--GELESESEEESEEDDEEEEE 224
           FG +    T      + +       EL+ E   E+E++     +
Sbjct: 3   FGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQ 46


>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 248

 Score = 26.1 bits (57), Expect = 8.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 258 DSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLG 292
           D++EL + KI+      E+ +  Q L  +   KLG
Sbjct: 211 DTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLG 245


>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 323

 Score = 26.1 bits (56), Expect = 9.3
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 216 EEDDEEEEEEEEGEDES 232
           E +D+ E+     E   
Sbjct: 306 EAEDKTEKLAAALEHHH 322


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,485,250
Number of extensions: 72938
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 18
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (24.9 bits)