Diaphorina citri psyllid: psy12225

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEGKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAEGLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVPGAGASAPGAPVKRTLPSSVELALDPSELDLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVARQKNKRKRQQTTQDNKQAKKYKEFKF
cHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccEEccccHHHccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccEEcccccccccccccccccccEEEcccccccccccccccccEEEccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
***************************LGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEGKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGG***********PLYGDVF***********************************************************T**GIT****************************************************MY*************************LDPSELDLVDT*********************************************************F
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MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEGKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWGExxxxxxxxxxxxxxxxxxxxxxxxxSGLITPAEGLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVPGAGASAPGAPVKRTLPSSVELALDPSELDLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVARQKNKRKRQQTTQDNKQAKKYKEFKF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Splicing factor 3B subunit 2 Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.confidentQ13435

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0044428 [CC]nuclear partconfidentGO:0005575, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0071011 [CC]precatalytic spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0071013 [CC]catalytic step 2 spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0005689 [CC]U12-type spliceosomal complexprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0005654 [CC]nucleoplasmprobableGO:0005575, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0003676 [MF]nucleic acid bindingprobableGO:0097159, GO:0003674, GO:1901363, GO:0005488
GO:0008380 [BP]RNA splicingprobableGO:0016070, GO:0006139, GO:0044260, GO:0044238, GO:0009987, GO:0006725, GO:0034641, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0010467, GO:0006807, GO:0008150, GO:1901360, GO:0008152, GO:0006396, GO:0046483
GO:0006397 [BP]mRNA processingprobableGO:0016070, GO:0016071, GO:0044238, GO:0044260, GO:0006139, GO:0009987, GO:0006725, GO:0034641, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0010467, GO:0006807, GO:0008150, GO:1901360, GO:0008152, GO:0006396, GO:0046483

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!