BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12229
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 194 bits (493), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 191/375 (50%), Gaps = 59/375 (15%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM + + G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 393 ESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 452
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKP-KTPTSLFKFLTV 129
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KKP K+ +F FL
Sbjct: 453 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKKPQKSKPGVFSFLDP 511
Query: 130 LETGVWLCILAAYCNLDGEQMKYLIQVNPPGDILPEVI---RAIILMQNITDAGILFDDS 186
L +W+CI+ AY + + +L+ P + E R ++ + GI
Sbjct: 512 LAYEIWMCIVFAYIGVS--VVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLW 569
Query: 187 FSGGE--------APKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDD 238
FS G +P++LSGR+V WW F III+SYTANLAAFLTV R+ +PIES +D
Sbjct: 570 FSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAED 629
Query: 239 LSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVS 298
LSKQ +I Y L+ + +F+ R+K+AV+D
Sbjct: 630 LSKQTEIAYGTLDSGSTKEFFR--------------------------RSKIAVFD---- 659
Query: 299 DKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTN-CDLQ 354
KMW M+ A+ + E V RVR SK + YL ++T Y+ CD
Sbjct: 660 ----KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIEQRKPCDTM 712
Query: 355 MVGDEFSRKPYAIAV 369
VG K Y IA
Sbjct: 713 KVGGNLDSKGYGIAT 727
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 14 QEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMI 73
+EPFVM E+ G KY+G+ ID+++ + +GF YEI+VAPD+ +G+ E+G WNG++
Sbjct: 12 EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLV 71
Query: 74 KELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSL--------FK 125
EL+ KRADI + +L++ +RENVVDFT Y D + +L+++ + SL
Sbjct: 72 GELVFKRADIGISALTITPDRENVVDFTTRYMDY-SVGVLLRRGTSIQSLQDLSKQTDIP 130
Query: 126 FLTVLETGVW 135
+ TVL++ V+
Sbjct: 131 YGTVLDSAVY 140
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 33/156 (21%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R T I+SL DLSKQ I Y + SA + RM L+ ER
Sbjct: 112 RRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHV-RMK-----------------GLNPFER 153
Query: 288 AKLAVWDYPVSDKYTKMWQAMKEAK-LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYL 346
+ Y++MW+ + + N++ E+ ++ K + + ++ DA + Y+
Sbjct: 154 DSM----------YSQMWRMINRSNGSENNVLESQAGIQKVKYGN--YAFVWDAAVLEYV 201
Query: 347 VMTN--CDLQMVGDEFSRKPYAIAVQQDRDARELFC 380
+ + C VG+ + + Y IA+Q R++F
Sbjct: 202 AINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFS 237
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 84/133 (63%), Gaps = 9/133 (6%)
Query: 14 QEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMI 73
+EPFV E+ G KY+G+ ID+++ + +GF YEI+VAPD+ +G+ E+G WNG++
Sbjct: 12 EEPFVXVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLV 71
Query: 74 KELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSL--------FK 125
EL+ KRADI + +L++ +RENVVDFT Y D + +L+++ + SL
Sbjct: 72 GELVFKRADIGISALTITPDRENVVDFTTRYXDY-SVGVLLRRGTSIQSLQDLSKQTDIP 130
Query: 126 FLTVLETGVWLCI 138
+ TVL++ V+ +
Sbjct: 131 YGTVLDSAVYQHV 143
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 33/156 (21%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R T I+SL DLSKQ I Y + SA + + L+ ER
Sbjct: 112 RRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRXKG------------------LNPFER 153
Query: 288 AKLAVWDYPVSDKYTKMWQAMKEAK-LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYL 346
Y++ W+ + + N++ E+ ++ K + + ++ DA + Y+
Sbjct: 154 ----------DSXYSQXWRXINRSNGSENNVLESQAGIQKVKYGN--YAFVWDAAVLEYV 201
Query: 347 VMTN--CDLQMVGDEFSRKPYAIAVQQDRDARELFC 380
+ + C VG+ + + Y IA+Q R++F
Sbjct: 202 AINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFS 237
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 75/109 (68%), Gaps = 3/109 (2%)
Query: 10 SRLKQEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENG 67
+ L +EPFVM +S+ G +++GYCIDL++E+ ++GF YEI + D +G D+ G
Sbjct: 9 TTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKG 68
Query: 68 QWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
QWNGM+KELI+ +AD+A+ L++ RE +DF+ P+ L G++IL +K
Sbjct: 69 QWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTL-GVSILYRK 116
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 41/144 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 115 RKGTPIDSADDLAKQTKIEYGAVKDGATMTFFK--------------------------K 148
Query: 288 AKLAVWDYPVSDKYTKMWQAM--KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRY 345
+K++ ++ KMW M K + L + EE +QR + + + L ++T I Y
Sbjct: 149 SKISTFE--------KMWAFMSSKPSALVKNNEEGIQR-----TLTADYALLMESTTIEY 195
Query: 346 LVMTNCDLQMVGDEFSRKPYAIAV 369
+ NC+L +G K Y I
Sbjct: 196 ITQRNCNLTQIGGLIDSKGYGIGT 219
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 75/109 (68%), Gaps = 3/109 (2%)
Query: 10 SRLKQEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENG 67
+ L +EPFVM +S+ G +++GYCIDL++E+ ++GF YEI + D +G D+ G
Sbjct: 11 TTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKG 70
Query: 68 QWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
QWNGM+KELI+ +AD+A+ L++ RE +DF+ P+ L G++IL +K
Sbjct: 71 QWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTL-GVSILYRK 118
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 41/144 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 117 RKGTPIDSADDLAKQTKIEYGAVKDGATMTFFK--------------------------K 150
Query: 288 AKLAVWDYPVSDKYTKMWQAM--KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRY 345
+K++ ++ KMW M K + L + EE +QR + + + L ++T I Y
Sbjct: 151 SKISTFE--------KMWAFMSSKPSALVKNNEEGIQR-----TLTADYALLMESTTIEY 197
Query: 346 LVMTNCDLQMVGDEFSRKPYAIAV 369
+ NC+L +G K Y I
Sbjct: 198 ITQRNCNLTQIGGLIDSKGYGIGT 221
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 81/118 (68%), Gaps = 5/118 (4%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 22 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 81
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPK-TPTSLFKFL 127
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +KP T +F FL
Sbjct: 82 GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL-GISILYRKPNGTNPGVFSFL 138
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R+++PI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 150 RMESPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 183
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 184 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 230
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 231 FVTQRNCNLTQIGGLIDSKGYGVGT 255
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNG 71
+EP+VM +S+ G +++GYC+DL++E+ ++GF Y++ + PD +G ++ G+WNG
Sbjct: 13 EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNG 72
Query: 72 MIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
M+KELI+ RAD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 MVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTL-GISILYRK 116
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + + MT+F+ +
Sbjct: 115 RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK--------------------------K 148
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ Y KMW M +++ L + +E +QRV + + L ++T I
Sbjct: 149 SKIST--------YEKMWAFMSSRQQSALVKNSDEGIQRVLTTD-----YALLMESTSIE 195
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
Y+ NC+L +G K Y +
Sbjct: 196 YVTQRNCNLTQIGGLIDSKGYGVGT 220
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNG 71
+EP+VM +S+ G +++GYC+DL++E+ ++GF Y++ + PD +G ++ G+WNG
Sbjct: 13 EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNG 72
Query: 72 MIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
M+KELI+ RAD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 MVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTL-GISILYRK 116
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + + MT+F+ +
Sbjct: 115 RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK--------------------------K 148
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ Y KMW M +++ L + +E +QRV + + L ++T I
Sbjct: 149 SKIST--------YEKMWAFMSSRQQSALVKNSDEGIQRVLTTD-----YALLMESTSIE 195
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
Y+ NC+L +G K Y +
Sbjct: 196 YVTQRNCNLTQIGGLIDSKGYGVGT 220
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNG 71
+EP+VM +S+ G +++GYC+DL++E+ ++GF Y++ + PD +G ++ G+WNG
Sbjct: 13 EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNG 72
Query: 72 MIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
M+KELI+ RAD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 MVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTL-GISILYRK 116
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + + MT+F+ +
Sbjct: 115 RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK--------------------------K 148
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ Y KMW M +++ L + +E +QRV + + L ++T I
Sbjct: 149 SKIST--------YEKMWAFMSSRQQSALVKNSDEGIQRVLTTD-----YALLMESTSIE 195
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
Y+ NC+L +G K Y +
Sbjct: 196 YVTQRNCNLTQIGGLIDSKGYGVGT 220
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNG 71
+EP+VM +S+ G +++GYC+DL++E+ ++GF Y++ + PD +G ++ G+WNG
Sbjct: 13 EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNG 72
Query: 72 MIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
M+KELI+ RAD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 MVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTL-GISILYRK 116
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + + MT+F+ +
Sbjct: 115 RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK--------------------------K 148
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ Y KMW M +++ L + +E +QRV + + L ++T I
Sbjct: 149 SKIST--------YEKMWAFMSSRQQSALVKNSDEGIQRVLTTD-----YALLMESTSIE 195
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
Y+ NC+L +G K Y +
Sbjct: 196 YVTQRNCNLTQIGGLIDSKGYGVGT 220
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNG 71
+EP+VM +S+ G +++GYC+DL++E+ ++GF Y++ + PD +G ++ G+WNG
Sbjct: 12 EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNG 71
Query: 72 MIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
M+KELI+ RAD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 72 MVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTL-GISILYRK 115
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + + MT+F+ +
Sbjct: 114 RKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFK--------------------------K 147
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ Y KMW M ++ L + +E +QRV + + L ++T I
Sbjct: 148 SKIST--------YEKMWAFMSSRQQTALVRNSDEGIQRVLTTD-----YALLMESTSIE 194
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
Y+ NC+L +G K Y +
Sbjct: 195 YVTQRNCNLTQIGGLIDSKGYGVGT 219
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITCVREKVIDFSKPFMTL-GISILYRK 117
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 12 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWN 71
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 72 GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL-GISILYRK 116
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 115 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 148
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 149 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 195
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 196 FVTQRNCNLTQIGGLIDSKGYGVGT 220
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL-GISILYRK 117
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL-GISILYRK 117
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 42/153 (27%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAVQQDRDARE 377
++ NC+L +G K Y + + R+
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPKGSPYRD 229
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL-GISILYRK 117
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ R
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------R 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL-GISILYRK 117
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ R
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------R 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL-GISILYRK 117
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTL-GISILYRK 117
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ ++GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTL-GISILYRK 117
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 74/106 (69%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ +GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTL-GISILYRK 117
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ R
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------R 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 74/106 (69%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ +GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTL-GISILYRK 117
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ +
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------K 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 74/106 (69%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWN 70
+EP+V+ ++S+ G +++GYCIDL+ E+ +GF YEI + D +G D+ NGQWN
Sbjct: 13 EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM++ELI+ +AD+A+ L++ RE V+DF+ P+ L GI+IL +K
Sbjct: 73 GMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTL-GISILYRK 117
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 42/145 (28%)
Query: 228 RLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVER 287
R TPI+S DDL+KQ KI+Y + A MT+F+ R
Sbjct: 116 RKGTPIDSADDLAKQTKIEYGAVEDGATMTFFK--------------------------R 149
Query: 288 AKLAVWDYPVSDKYTKMWQAM---KEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIR 344
+K++ +D KMW M +++ L S EE +QRV S + +L ++T I
Sbjct: 150 SKISTYD--------KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIE 196
Query: 345 YLVMTNCDLQMVGDEFSRKPYAIAV 369
++ NC+L +G K Y +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGT 221
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 25 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 84
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKT 119
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KKP T
Sbjct: 85 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKKPGT 132
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 41/144 (28%)
Query: 232 PIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLA 291
PIES +DLSKQ +I Y L+ + +F+ R+K+A
Sbjct: 136 PIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKIA 169
Query: 292 VWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVM 348
V+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 170 VFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIEQ 218
Query: 349 TN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 219 RKPCDTMKVGGNLDSKGYGIATPK 242
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G KY+GYC+DL EI K +G +Y+I + PD +G D + + WN
Sbjct: 9 ESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWN 68
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +A+IA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 69 GMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 113
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 41/150 (27%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DL+KQ +I Y L+ + +F+ R+K+
Sbjct: 115 TPIESAEDLAKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 148
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV Y KMW M+ A+ + E V RVR SK F +L ++T Y
Sbjct: 149 AV--------YEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGK---FAFLLESTMNEYTE 197
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQDRDAR 376
CD VG K Y +A + R
Sbjct: 198 QRKPCDTMKVGGNLDSKGYGVATPKGSSLR 227
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G KY+GYC+DL EI K +G +Y+I + PD +G D + + WN
Sbjct: 9 ESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWN 68
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +A+IA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 69 GMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 113
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 41/150 (27%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DL+KQ +I Y ++ + +F+ R+K+
Sbjct: 115 TPIESAEDLAKQTEIAYGTVDSGSTKEFFR--------------------------RSKI 148
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV Y KMW M+ A+ + E V RVR SK F +L ++T Y
Sbjct: 149 AV--------YEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGK---FAFLLESTMNEYTE 197
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQDRDAR 376
CD VG K Y +A + R
Sbjct: 198 QRKPCDTMKVGGNLDSKGYGVATPKGSSLR 227
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G KY+GYC+DL EI K +G +Y+I + PD +G D + + WN
Sbjct: 11 ESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWN 70
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +A+IA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 71 GMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 115
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 41/150 (27%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DL+KQ +I Y L+ + +F+ R+K+
Sbjct: 117 TPIESAEDLAKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 150
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV Y KMW M+ A+ + E V RVR SK F +L ++T Y+
Sbjct: 151 AV--------YEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGK---FAFLLESTMNEYIE 199
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQDRDAR 376
CD VG K Y +A + R
Sbjct: 200 QRKPCDTMKVGGNLDSKGYGVATPKGSSLR 229
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G DE+ + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDEDTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDDGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEALEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 41/150 (27%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQDRDAR 376
CD VG K Y IA + R
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPKGSSLR 231
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 11 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 70
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 71 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 115
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 117 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 150
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 151 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 199
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 200 QRKPCDTMKVGCNLDSKGYGIATPK 224
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 10 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 69
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 70 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 114
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 116 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 149
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 150 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 198
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 199 QRKPCDTMKVGGNLDSKGYGIATPK 223
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 10 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 69
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 70 GMVGELVYGKADIAIAPLTITLCREEVIDFSKPFMSL-GISIMIKK 114
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 116 TPIESAEDLSKQTEIAYGTLDSGSTKCFFR--------------------------RSKI 149
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 150 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 198
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 199 QRKPCDTMKVGGNLDSKGYGIATPK 223
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 10 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 69
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 70 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 114
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 116 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 149
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 150 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 198
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 199 QRKPCDTMKVGGNLDSKGYGIATPK 223
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 11 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 70
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 71 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 115
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 117 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 150
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 151 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 199
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 200 QRKPCDTMKVGGNLDCKGYGIATPK 224
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 14 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 73
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 74 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 118
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 120 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 153
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 154 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 202
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 203 QRKPCDTMKVGGNLDSKGYGIATPK 227
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 12 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 71
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 72 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 116
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 118 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 151
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 152 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 200
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 201 QRKPCDTMKVGGNLDSKGYGIATPK 225
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 29 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 88
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 89 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 133
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 135 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 168
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 169 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 217
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 218 QRKPCDTMKVGGNLDSKGYGIATPK 242
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y + + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTTDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 41/150 (27%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQDRDAR 376
CD VG K Y IA + R
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPKGSSLR 231
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTAAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 12 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 71
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 72 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 116
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 41/150 (27%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 118 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 151
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 152 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 200
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQDRDAR 376
CD VG K Y IA + R
Sbjct: 201 QRKPCDTMKVGGNLDSKGYGIATPKGSSLR 230
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 11 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 70
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 71 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 115
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 117 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 150
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 151 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 199
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 200 QRKPCDTMKVGGNLDSKGYGIATPK 224
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + +L ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAFLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTSAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 26 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 85
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 86 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 130
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 132 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 165
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 166 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 214
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 215 QRKPCDTMKVGGNLDSKGYGIATPK 239
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSL-GISIMIKK 117
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y + + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTTDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 42 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 101
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 102 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 146
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 148 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 181
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 182 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 230
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 231 QRKPCDTMKVGGNLDSKGYGIATPK 255
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 10 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWN 69
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 70 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 114
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 116 TPIESAEDLSKQTEIAYGTLDCGSTKEFFR--------------------------RSKI 149
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 150 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 198
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 199 QRKPCDTMKVGGNLDSKGYGIATPK 223
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 14 QEPFVMREESEG--GGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQ-WN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + + WN
Sbjct: 13 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKWGARDADTKIWN 72
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ +ADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 73 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSL-GISIMIKK 117
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DLSKQ +I Y L+ + +F+ R+K+
Sbjct: 119 TPIESAEDLSKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 152
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV+D KMW M+ A+ + E V RVR SK + YL ++T Y+
Sbjct: 153 AVFD--------KMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIE 201
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y IA +
Sbjct: 202 QRKPCDTMKVGGNLDSKGYGIATPK 226
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 23/228 (10%)
Query: 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMA 92
GYCIDL+E + + + F++E+++ D +G + +G+W G++ +L+ RA +A+ S S+ +
Sbjct: 68 GYCIDLLERLAEDLAFDFELYIVGDGKYGAL-RDGRWTGLVGDLLAGRAHMAVTSFSINS 126
Query: 93 ERENVVDFTVPYYDL-VGITILMK----------KPKTPTSLFKFLTVLETGVWLCILAA 141
R VVDFT P++ +GI + + K P+ F+F TV E+ I A+
Sbjct: 127 ARSQVVDFTSPFFSTSLGIMVRTRGTELSGIHDPKLHHPSQGFRFGTVWESSAEAYIKAS 186
Query: 142 YCNLDGEQMKYLIQVNPPGDIL----PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLS 197
+ + ++ P G + P + A I+ +++ D + D +
Sbjct: 187 FPEMHAHMRRHSAPTTPHGVAMLTSDPPKLNAFIMDKSLLDYEVSID-----ADCKLLTV 241
Query: 198 GRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQYKI 245
G+ A + G + T+NL+ F++ + I+ L D K YK+
Sbjct: 242 GKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHD--KWYKM 287
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 14 QEPFVM--REESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMD-ENGQWN 70
+ P+VM + + G +Y+GYC+DL EI K V +Y++ + D +G D E WN
Sbjct: 10 ESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWN 69
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ RADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 70 GMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSL-GISIMIKK 114
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DL+KQ +I Y L+ + +F+ R+K+
Sbjct: 116 TPIESAEDLAKQTEIAYGTLDSGSTAEFFR--------------------------RSKI 149
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV Y KMW MK A+ + + V RVR SK F +L ++T Y+
Sbjct: 150 AV--------YEKMWSYMKSAEPSVFTKTTADGVARVRKSKGK---FAFLLESTMNEYIE 198
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y +A +
Sbjct: 199 QRKPCDTMKVGGNLDSKGYGVATPK 223
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 14 QEPFVM--REESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMD-ENGQWN 70
+ P+VM + + G +Y+GYC+DL EI K V +Y++ + D +G D E WN
Sbjct: 10 ESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWN 69
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ RADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 70 GMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSL-GISIMIKK 114
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DL+KQ +I Y L+ + +F+ R+K+
Sbjct: 116 TPIESAEDLAKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 149
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV Y KMW MK A+ + + V RVR SK F +L ++T Y+
Sbjct: 150 AV--------YEKMWSYMKSAEPSVFTKTTADGVARVRKSKGK---FAFLLESTMNEYIE 198
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y +A +
Sbjct: 199 QRKPCDTMKVGGNLDSKGYGVATPK 223
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 14 QEPFVM--REESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMD-ENGQWN 70
+ P+VM + + G +Y+GYC+DL EI K V +Y++ + D +G D E WN
Sbjct: 10 ESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWN 69
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ RADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 70 GMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSL-GISIMIKK 114
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DL+KQ +I Y L + +F+ R+K+
Sbjct: 116 TPIESAEDLAKQTEIAYGTLASGSTKEFFR--------------------------RSKI 149
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV Y KMW MK A+ + + V RVR SK F +L ++T Y+
Sbjct: 150 AV--------YEKMWSYMKSAEPSVFTKTTADGVARVRKSKGK---FAFLLESTMNEYIE 198
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y +A +
Sbjct: 199 QRKPCDTMKVGGNLDSKGYGVATPK 223
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 14 QEPFVM--REESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMD-ENGQWN 70
+ P+VM + + G +Y+GYC+DL EI K V +Y++ + D +G D E WN
Sbjct: 29 ESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWN 88
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ RADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 89 GMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSL-GISIMIKK 133
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DL+KQ +I Y L+ + +F+ R+K+
Sbjct: 135 TPIESAEDLAKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 168
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV Y KMW MK A+ + + V RVR SK F +L ++T Y+
Sbjct: 169 AV--------YEKMWSYMKSAEPSVFTKTTADGVARVRKSKGK---FAFLLESTMNEYIE 217
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y +A +
Sbjct: 218 QRKPCDTMKVGGNLDSKGYGVATPK 242
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 14 QEPFVM--REESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMD-ENGQWN 70
+ P+VM + + G +Y+GYC+DL EI K V +Y++ + D +G D E WN
Sbjct: 10 ESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWN 69
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
GM+ EL+ RADIA+ L++ RE V+DF+ P+ L GI+I++KK
Sbjct: 70 GMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSL-GISIMIKK 114
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 41/145 (28%)
Query: 231 TPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKL 290
TPIES +DL+KQ +I Y L+ + +F+ R+K+
Sbjct: 116 TPIESAEDLAKQTEIAYGTLDSGSTKEFFR--------------------------RSKI 149
Query: 291 AVWDYPVSDKYTKMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
AV Y KMW MK A+ + + V RVR SK F +L ++T Y+
Sbjct: 150 AV--------YEKMWSYMKSAEPSVFTKTTADGVARVRKSKGK---FAFLLESTMNEYIE 198
Query: 348 MTN-CDLQMVGDEFSRKPYAIAVQQ 371
CD VG K Y +A +
Sbjct: 199 QRKPCDTMKVGGNLDSKGYGVATPK 223
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 32 KGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVM 91
KG+CID+++ + +GF Y++++ + G +G WNGMI E+ +RAD+A+GSL++
Sbjct: 60 KGFCIDILKRLAHTIGFSYDLYLVTNGKHGK-KIDGVWNGMIGEVFYQRADMAIGSLTIN 118
Query: 92 AERENVVDFTVPYYDLVGITILMKKPKTPTSL 123
ER +VDF+VP+ + GI++++ + T + L
Sbjct: 119 EERSEIVDFSVPFVE-TGISVMVARGTTVSGL 149
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 32 KGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVM 91
KG+CID+++++ + V F Y++++ + G N WNGMI E++ +RA +A+GSL++
Sbjct: 58 KGFCIDILKKLSRTVKFTYDLYLVTNGKHGK-KVNNVWNGMIGEVVYQRAVMAVGSLTIN 116
Query: 92 AERENVVDFTVPYYDLVGITILMKKPKTPTSL 123
ER VVDF+VP+ + GI++++ + T L
Sbjct: 117 EERSEVVDFSVPFVE-TGISVMVSRGTQVTGL 147
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 8 SDSRLKQEPFVMREESEGGGGVKYK----GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNM 63
+DS + F S +K+K GYCIDL+E++ + + F++++++ D +G
Sbjct: 41 NDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAW 100
Query: 64 DENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDL-VGITILMK------- 115
+NG W G++ +L+ A++A+ S S+ R V+DFT P++ +GI + +
Sbjct: 101 -KNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGI 159
Query: 116 ---KPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDIL----PEVIR 168
K P+ F+F TV E+ + ++ + +Y + P G PE +
Sbjct: 160 HDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLD 219
Query: 169 AIILMQNITDAGILFD 184
A I+ + + D + D
Sbjct: 220 AFIMDKALLDYEVSID 235
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFG-----NMDENGQWNGMIKELIEKRADIALGS 87
G+CIDL+ ++ + + F YE+ + D FG N +WNGM+ EL+ +AD+ +
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAP 124
Query: 88 LSVMAERENVVDFTVPYYDLVGITILMKKP-----------KTPTSLFKFLTVLETGV 134
L++ ER ++F+ P + G+TIL+KK + P+ F + TV ++ V
Sbjct: 125 LTINTERAQYIEFSKP-FKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSV 181
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFG-----NMDENGQWNGMIKELIEKRADIALGS 87
G+CIDL+ ++ + + F YE+ + D FG N +WNGM+ EL+ +AD+ +
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAP 124
Query: 88 LSVMAERENVVDFTVPYYDLVGITILMKKP-----------KTPTSLFKFLTVLETGV 134
L++ ER ++F+ P + G+TIL+KK + P+ F + TV ++ V
Sbjct: 125 LTINNERAQYIEFSKP-FKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSV 181
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 22 ESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRA 81
++ G K GY +DLIE +R +GF ++ +AP N+ + G++ L
Sbjct: 28 DTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAPPNT--------SYTGLVLALANGDY 79
Query: 82 DIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
DIA+G ++V + R +V F+ D + ILM+K
Sbjct: 80 DIAIGDITVTSARREIVAFSNSISD-NSMRILMRK 113
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 28 GVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGS 87
G KY G+ +DL EI K G+ Y+I MD + G+I L + D+AL
Sbjct: 42 GDKYVGFDLDLWAEIAKGAGWTYKI--------QPMD----FAGLIPALQTQNIDVALSG 89
Query: 88 LSVMAERENVVDFTVPYYD 106
+++ ER +DF+ PYYD
Sbjct: 90 MTIKEERRKAIDFSDPYYD 108
>pdb|1NEP|A Chain A, Crystal Structure Analysis Of The Bovine Npc2
(Niemann-Pick C2) Protein
pdb|2HKA|A Chain A, Crystal Structure Of Bovine Npc2 And Cholesterol Sulfate
Complex
pdb|2HKA|B Chain B, Crystal Structure Of Bovine Npc2 And Cholesterol Sulfate
Complex
pdb|2HKA|C Chain C, Crystal Structure Of Bovine Npc2 And Cholesterol Sulfate
Complex
Length = 130
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 382 VHANILSIPFPFIGVDGTSVCSSIFDTDG-KTKVSCPLKKDHVYRYINTFKILDRYP 437
VH ++ IP PF I ++DG K+ + CP++KD Y Y+N + + YP
Sbjct: 55 VHGIVMGIPVPF----------PIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYP 101
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMA 92
G+ +DL++ + K G +YE+ +N W+ + L K D+ + +++
Sbjct: 65 GFDVDLLDAVMKAAGLDYEL------------KNIGWDPLFASLQSKEVDMGISGITITD 112
Query: 93 ERENVVDFTVPYYDLVGITILMKK 116
ER+ DF+ PY++ + IL+K+
Sbjct: 113 ERKQSYDFSDPYFEATQV-ILVKQ 135
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMA 92
G ID+ + I +G + EI SF N+ + L +AD+A+ +S
Sbjct: 39 GADIDMAQAIADELGVKLEIL---SMSFDNV---------LTSLQTGKADLAVAGISATD 86
Query: 93 ERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETG 133
ER+ V DF++PYY+ I+ L+ K +K LT LE+
Sbjct: 87 ERKEVFDFSIPYYE-NKISFLVHKADVEK--YKDLTSLESA 124
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 69 WNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYY 105
W+G + + +AD+A +S+ +R+ V+DF+ PYY
Sbjct: 77 WDGXLGAVASGQADVAFSGISITDKRKKVIDFSEPYY 113
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 69 WNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYY 105
W+G + + +AD+A +S+ +R+ V+DF+ PYY
Sbjct: 57 WDGXLGAVASGQADVAFSGISITDKRKKVIDFSEPYY 93
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 31 YKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSV 90
Y G+ +DL I K + +YE+ P MD ++G+I L K D+AL +++
Sbjct: 24 YVGFDVDLWAAIAKELKLDYEL--KP------MD----FSGIIPALQTKNVDLALAGITI 71
Query: 91 MAERENVVDFTVPYYDLVGITILMK 115
ER+ +DF+ YY G+ +++K
Sbjct: 72 TDERKKAIDFSDGYYK-SGLLVMVK 95
>pdb|3KBR|A Chain A, The Crystal Structure Of Cyclohexadienyl Dehydratase
Precursor From Pseudomonas Aeruginosa Pa01
Length = 239
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 26/109 (23%)
Query: 15 EPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIK 74
+PF R E EGG Y G+ +D + + + +G ++ V P + W + +
Sbjct: 26 KPFSYRTE-EGG----YAGFDVDXAQRLAESLG--AKLVVVPTS----------WPNLXR 68
Query: 75 ELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSL 123
+ + R DIA +S+ ER+ F++PY ++ KTP +L
Sbjct: 69 DFADDRFDIAXSGISINLERQRQAYFSIPY---------LRDGKTPITL 108
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMA 92
G+ +DL E K G + ++ W+G+I L+ ++ DI + ++
Sbjct: 29 GFDVDLAREXAKAXGVKLKLVPT------------SWDGLIPGLVTEKFDIIISGXTISQ 76
Query: 93 ERENVVDFTVPYYDLVGITILMKK 116
ER V+F PY +VG ++L+KK
Sbjct: 77 ERNLRVNFVEPYI-VVGQSLLVKK 99
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%)
Query: 148 EQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWL 207
E ++YL P G + P + R +L+ + + + + GG K +V+
Sbjct: 17 EVLRYLYHKRPMGKVKPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVS 76
Query: 208 FGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQYKIQYAPLN 251
G+ + + Y+ +L+ F RL+ S +D+ K Y+ LN
Sbjct: 77 QGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILN 120
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 16 PFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKE 75
PFV+ + E G+ IDL I +G E ++ + ++ E +I
Sbjct: 14 PFVLSNKGE------LSGFSIDLWRSIATQIGIESKLI-----EYSSVPE------LISA 56
Query: 76 LIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPT 121
+ + + ++ + ++S+ AERE DF++P + G+ I+++ ++ T
Sbjct: 57 IKDNKVNLGIAAISITAEREQNFDFSLPIFA-SGLQIMVRNLESGT 101
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 26 GGGVKYKGYCIDLIEEIRKLVGFEYEIFVA------PDNSFGNMDENGQWNGMIKELIEK 79
G Y Y + ++ K+VGF+ ++ A + SF N ++ +I L K
Sbjct: 11 GTSATYAPY--EFVDADNKIVGFDIDVANAVCKEMQAECSFTNQ----SFDSLIPSLRFK 64
Query: 80 RADIALGSLSVMAERENVVDFTVPYYDLVGITILMKK 116
+ D + + + +RE V F+ PYY+ + ++ +K
Sbjct: 65 KFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRK 101
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 65 ENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYY 105
N W+ +I L + D G ++ R+ VDFT PYY
Sbjct: 46 SNQPWDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPYY 86
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMA 92
G I+L + I +G E E+ +P SF N+ + Q +AD+A+ +S
Sbjct: 66 GSDIELAKAIATELGVELEL--SP-MSFDNVLASVQSG---------KADLAISGVSKTD 113
Query: 93 ERENVVDFTVPYY 105
ER V DF+ PYY
Sbjct: 114 ERSKVFDFSTPYY 126
>pdb|3HV1|A Chain A, Crystal Structure Of A Polar Amino Acid Abc Uptake
Transporter Substrate Binding Protein From Streptococcus
Thermophilus
pdb|3HV1|B Chain B, Crystal Structure Of A Polar Amino Acid Abc Uptake
Transporter Substrate Binding Protein From Streptococcus
Thermophilus
Length = 268
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 21 EESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80
EE +G Y G+ IDL + KL G + E + A D W+ EL
Sbjct: 37 EEKDG----SYIGFDIDLANAVFKLYGIDVE-WQAID-----------WDXKETELKNGT 80
Query: 81 ADIALGSLSVMAERENVVDFTVPY 104
D+ SV ER+ DFT PY
Sbjct: 81 IDLIWNGYSVTDERKQSADFTEPY 104
>pdb|3I6V|A Chain A, Crystal Structure Of A Periplasmic HisGLUGLNARGOPINE
FAMILY- Binding Protein From Silicibacter Pomeroyi In
Complex With Lysine
Length = 232
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 69 WNGMIKELIEKRADIALGSLSVMAERENVVDFTVPY 104
W+ +I L+ D + +S+ ER+ V+DFT Y
Sbjct: 53 WDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNY 88
>pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae
Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric
Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme
Length = 533
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 60 FGNMDENGQWNGMIKELIEKRADIALGSLSVMAER-ENVVDFTVPYYDLVGITILMKK 116
F MDE+ Q+ +K+LI +R L +R EN VD YY L+ + + K
Sbjct: 399 FALMDESDQYKHTLKQLIRRREATLYRELGTPPQRDENAVD----YYTLIDLQDVTSK 452
>pdb|2V25|A Chain A, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
pdb|2V25|B Chain B, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
Length = 259
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 82 DIALGSLSVMAERENVVDFTVPYY-DLVGITILMKK 116
D + + ++ ER+ + +F+ PYY D +G+ +L +K
Sbjct: 103 DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEK 138
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Query: 64 DENGQWNGMIKELIEKR-ADIALGSLSVMAERENVVDFTVPYYDL-VGITILMKKPKTPT 121
D+N +E+ E A+ A+ SVM D V Y+ + TI+ + P+ P
Sbjct: 100 DQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPH 159
Query: 122 SLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI----LPEVIRAIILMQNIT 177
F +TGV + +L + LD E V D+ L +A+I +++I
Sbjct: 160 KNM-FTVNRDTGV-ISVLTS--GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDIN 215
Query: 178 DAGILFDDSFSGGEAPKN 195
D +F+ S G+ P+N
Sbjct: 216 DNAPVFNPSTYQGQVPEN 233
>pdb|2IEE|A Chain A, Crystal Structure Of Yckb_bacsu From Bacillus Subtilis.
Northeast Structural Genomics Consortium Target Sr574.
pdb|2IEE|B Chain B, Crystal Structure Of Yckb_bacsu From Bacillus Subtilis.
Northeast Structural Genomics Consortium Target Sr574
Length = 271
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 27 GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALG 86
G K GY ++++ E K +G + E E G +G + + + D A
Sbjct: 42 GSDKLTGYEVEVVREAAKRLGLKVE-----------FKEXG-IDGXLTAVNSGQVDAAAN 89
Query: 87 SLSVMAERENVVDFTVPYYDLVGITILMK 115
+ V +RE F+ PY G I+ K
Sbjct: 90 DIDVTKDREEKFAFSTPYKYSYGTAIVRK 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,587,939
Number of Sequences: 62578
Number of extensions: 582774
Number of successful extensions: 1418
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 160
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)