Query psy12229
Match_columns 444
No_of_seqs 130 out of 1653
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 22:05:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 3.4E-48 1.2E-52 425.4 26.9 361 4-420 383-768 (823)
2 1yae_A Glutamate receptor, ion 100.0 3.6E-30 1.2E-34 250.6 19.4 282 4-425 12-300 (312)
3 3g3k_A Glutamate receptor, ion 100.0 2.9E-28 9.8E-33 229.8 19.6 251 4-418 3-259 (259)
4 1pb7_A N-methyl-D-aspartate re 100.0 1.1E-27 3.9E-32 231.0 18.7 249 4-418 3-292 (292)
5 2rc8_A Glutamate [NMDA] recept 100.0 1.2E-27 3.9E-32 231.0 18.3 246 4-417 4-293 (294)
6 2a5s_A N-methyl-D-aspartate re 99.9 4.5E-26 1.5E-30 218.8 18.3 249 5-417 5-283 (284)
7 2v3u_A Glutamate receptor delt 99.9 1.3E-25 4.5E-30 211.8 21.0 256 5-417 3-264 (265)
8 1mqi_A Glutamate receptor 2; G 99.9 1.8E-25 6.2E-30 211.1 20.9 252 3-417 2-262 (263)
9 4gvo_A LMO2349 protein; struct 99.9 1.1E-23 3.6E-28 197.2 10.3 226 3-409 7-236 (243)
10 4h5g_A Amino acid ABC superfam 99.9 7.8E-23 2.7E-27 191.3 14.2 223 4-409 11-238 (243)
11 3k4u_A Binding component of AB 99.9 6.1E-22 2.1E-26 184.6 17.7 226 2-411 2-231 (245)
12 3i6v_A Periplasmic His/Glu/Gln 99.9 1E-21 3.5E-26 182.1 15.1 214 2-410 2-219 (232)
13 3kzg_A Arginine 3RD transport 99.9 2.2E-21 7.5E-26 179.9 15.6 218 5-410 3-232 (237)
14 4f3p_A Glutamine-binding perip 99.9 3.1E-21 1.1E-25 180.4 16.0 219 4-410 23-244 (249)
15 3hv1_A Polar amino acid ABC up 99.9 3.1E-21 1E-25 182.5 14.6 235 4-419 20-259 (268)
16 1ii5_A SLR1257 protein; membra 99.9 5.4E-21 1.9E-25 176.0 15.5 221 3-410 2-228 (233)
17 3del_B Arginine binding protei 99.9 7.4E-21 2.5E-25 176.6 16.3 218 3-410 9-234 (242)
18 3kbr_A Cyclohexadienyl dehydra 99.8 3.9E-21 1.3E-25 178.2 12.7 221 4-408 14-237 (239)
19 4eq9_A ABC transporter substra 99.8 3.4E-20 1.2E-24 172.2 15.4 225 3-410 6-237 (246)
20 3tql_A Arginine-binding protei 99.8 3.6E-20 1.2E-24 169.5 15.4 217 5-407 2-227 (227)
21 1wdn_A GLNBP, glutamine bindin 99.8 6.5E-20 2.2E-24 167.7 16.4 220 4-411 2-225 (226)
22 2pyy_A Ionotropic glutamate re 99.8 3.8E-20 1.3E-24 169.5 13.3 221 4-410 2-224 (228)
23 2y7i_A STM4351; arginine-bindi 99.8 1.4E-19 4.8E-24 166.1 17.0 215 5-408 6-228 (229)
24 1lst_A Lysine, arginine, ornit 99.8 2.3E-19 7.8E-24 166.0 18.2 222 4-410 3-234 (239)
25 3h7m_A Sensor protein; histidi 99.8 1.1E-19 3.8E-24 167.3 15.8 220 3-410 9-232 (234)
26 3mpk_A Virulence sensor protei 99.8 9.6E-20 3.3E-24 172.5 14.6 218 4-409 31-253 (267)
27 4dz1_A DALS D-alanine transpor 99.8 1.8E-19 6E-24 169.8 15.7 225 5-410 29-255 (259)
28 2q88_A EHUB, putative ABC tran 99.8 3.6E-19 1.2E-23 166.9 15.7 222 4-408 12-240 (257)
29 2iee_A ORF2, probable ABC tran 99.8 1.8E-19 6.2E-24 171.0 13.2 216 4-408 20-246 (271)
30 3qax_A Probable ABC transporte 99.8 1.2E-18 4.1E-23 163.9 16.9 218 4-410 30-255 (268)
31 4i62_A Amino acid ABC transpor 99.8 1.9E-18 6.6E-23 162.5 14.4 219 5-409 39-265 (269)
32 2pvu_A ARTJ; basic amino acid 99.8 5.1E-18 1.8E-22 160.8 16.9 219 4-410 41-264 (272)
33 2yln_A Putative ABC transporte 99.8 4.7E-18 1.6E-22 162.5 16.0 216 5-410 57-279 (283)
34 2vha_A Periplasmic binding tra 99.8 7.9E-18 2.7E-22 160.7 17.5 223 4-410 16-250 (287)
35 1xt8_A Putative amino-acid tra 99.8 3.8E-18 1.3E-22 163.5 15.1 217 5-409 44-266 (292)
36 2yjp_A Putative ABC transporte 99.8 5.8E-18 2E-22 162.5 14.7 217 5-409 55-277 (291)
37 2v25_A Major cell-binding fact 99.6 1.3E-15 4.5E-20 142.1 14.3 215 5-407 38-258 (259)
38 2ozz_A Hypothetical protein YH 98.2 3.2E-06 1.1E-10 77.2 9.0 73 30-117 29-107 (231)
39 3n5l_A Binding protein compone 98.0 2.2E-05 7.4E-10 75.6 10.9 77 315-395 155-237 (310)
40 3p7i_A PHND, subunit of alkylp 97.9 5.9E-05 2E-09 72.9 11.4 77 315-395 164-246 (321)
41 3uif_A Sulfonate ABC transport 96.8 0.0055 1.9E-07 59.3 10.7 69 38-116 35-107 (348)
42 2x26_A Periplasmic aliphatic s 96.8 0.027 9.1E-07 53.1 14.8 64 41-116 24-93 (308)
43 3qsl_A Putative exported prote 96.4 0.06 2.1E-06 51.3 14.8 63 42-116 58-124 (346)
44 3ksx_A Nitrate transport prote 96.3 0.13 4.3E-06 48.9 16.2 37 41-88 50-87 (324)
45 2dvz_A BUGE, putative exported 96.1 0.15 5.1E-06 48.6 15.6 78 314-395 175-275 (314)
46 2qpq_A Protein BUG27; alpha/be 95.8 0.21 7.1E-06 47.3 15.0 76 314-395 162-262 (301)
47 2k1e_A Water soluble analogue 95.7 0.022 7.4E-07 44.9 6.3 57 164-227 40-96 (103)
48 2f5x_A BUGD; periplasmic bindi 95.6 0.45 1.5E-05 45.2 16.5 78 314-395 171-271 (312)
49 3eff_K Voltage-gated potassium 95.3 0.039 1.3E-06 45.9 6.9 56 164-226 40-95 (139)
50 2ih3_C Voltage-gated potassium 95.3 0.035 1.2E-06 45.1 6.4 57 164-227 61-117 (122)
51 4h33_A LMO2059 protein; bilaye 95.2 0.058 2E-06 44.8 7.6 56 165-227 44-99 (137)
52 3un6_A Hypothetical protein sa 95.0 0.072 2.5E-06 51.1 8.9 71 316-390 190-272 (341)
53 2a9h_A Voltage-gated potassium 95.0 0.048 1.6E-06 46.4 6.6 58 164-228 84-141 (155)
54 3jv9_A OXYR, transcriptional r 94.7 0.58 2E-05 40.4 13.4 68 33-117 17-85 (219)
55 4ab5_A Transcriptional regulat 94.5 0.2 6.7E-06 43.7 9.8 68 33-117 21-89 (222)
56 3ix1_A N-formyl-4-amino-5-amin 94.0 0.074 2.5E-06 49.9 6.3 75 30-116 16-94 (302)
57 3ho7_A OXYR; beta-alpha-barrel 93.4 0.29 9.9E-06 43.0 8.8 68 33-117 24-92 (232)
58 3ouf_A Potassium channel prote 92.4 0.22 7.4E-06 38.6 5.6 57 165-228 33-89 (97)
59 3oxn_A Putative transcriptiona 91.6 0.88 3E-05 40.2 9.6 68 33-117 32-100 (241)
60 3ldc_A Calcium-gated potassium 91.4 0.28 9.6E-06 36.6 5.0 53 165-224 29-81 (82)
61 3pjs_K KCSA, voltage-gated pot 91.2 0.1 3.5E-06 44.8 2.7 56 165-227 68-123 (166)
62 1p7b_A Integral membrane chann 91.2 0.47 1.6E-05 45.4 7.6 59 164-229 96-154 (333)
63 2x7q_A Ca3427, possible thiami 91.2 2.4 8.2E-05 39.8 12.7 47 33-89 29-75 (321)
64 4ddd_A Immunogenic protein; ss 90.9 2 7E-05 40.8 11.8 49 30-89 44-96 (327)
65 2q67_A Potassium channel prote 90.6 0.32 1.1E-05 38.9 4.9 56 165-227 50-105 (114)
66 3fzv_A Probable transcriptiona 90.5 2 7E-05 39.4 11.4 67 34-117 109-177 (306)
67 1orq_C Potassium channel; volt 89.9 0.53 1.8E-05 42.1 6.5 56 164-226 165-220 (223)
68 3vou_A ION transport 2 domain 88.8 0.5 1.7E-05 39.5 5.0 54 165-225 53-106 (148)
69 2y7p_A LYSR-type regulatory pr 88.6 3.4 0.00012 35.9 10.8 67 34-117 22-89 (218)
70 2fyi_A HTH-type transcriptiona 88.3 6.2 0.00021 34.2 12.4 68 34-117 28-96 (228)
71 1xl4_A Inward rectifier potass 88.3 0.65 2.2E-05 43.8 5.9 58 164-228 82-139 (301)
72 2qks_A KIR3.1-prokaryotic KIR 87.2 1.1 3.8E-05 42.6 6.9 58 164-228 78-135 (321)
73 1i6a_A OXYR, hydrogen peroxide 86.6 1.5 5.1E-05 38.1 7.1 68 33-117 18-86 (219)
74 2ql3_A Probable transcriptiona 86.0 9.7 0.00033 32.2 12.1 68 33-117 18-86 (209)
75 1al3_A Cys regulon transcripti 85.6 12 0.0004 34.7 13.3 69 314-389 224-294 (324)
76 2esn_A Probable transcriptiona 85.5 5.3 0.00018 36.7 10.7 66 35-117 116-185 (310)
77 2hxr_A HTH-type transcriptiona 85.1 7.7 0.00026 33.7 11.2 68 33-117 43-111 (238)
78 3fxq_A LYSR type regulator of 83.8 6.2 0.00021 36.2 10.3 70 33-117 105-175 (305)
79 3beh_A MLL3241 protein; transm 82.4 0.85 2.9E-05 43.9 3.7 55 165-226 162-216 (355)
80 1us5_A Putative GLUR0 ligand b 81.3 15 0.00052 33.7 12.1 40 38-88 39-79 (314)
81 1uth_A LYSR-type regulatory pr 80.8 9.7 0.00033 35.1 10.5 64 37-117 122-186 (315)
82 2h98_A HTH-type transcriptiona 80.6 21 0.0007 32.9 12.7 68 33-117 103-171 (313)
83 1nep_A EPV20, BNPC2, epididyma 80.5 1.2 4E-05 36.4 3.3 40 396-443 68-107 (130)
84 2h9b_A HTH-type transcriptiona 80.2 14 0.00049 33.8 11.5 68 33-117 103-171 (312)
85 3um7_A Potassium channel subfa 79.7 1.9 6.4E-05 40.7 4.9 54 166-226 117-170 (309)
86 2r9r_B Paddle chimera voltage 78.2 2.7 9.2E-05 42.7 5.9 55 165-226 376-430 (514)
87 1zbm_A Hypothetical protein AF 77.4 15 0.0005 33.3 10.4 68 316-390 132-211 (280)
88 1xwv_A DER F II; beta sheets, 76.6 1.8 6.1E-05 35.2 3.3 38 397-443 68-106 (129)
89 1ixc_A CBNR, LYSR-type regulat 74.4 16 0.00053 32.9 9.7 68 33-117 104-172 (294)
90 4gx0_A TRKA domain protein; me 74.4 2.3 7.9E-05 43.7 4.3 54 165-225 52-106 (565)
91 3lr1_A Tungstate ABC transport 74.1 5 0.00017 36.2 6.0 75 32-119 18-95 (236)
92 1lnq_A MTHK channels, potassiu 73.2 0.48 1.6E-05 45.3 -1.2 58 165-229 46-103 (336)
93 1twy_A ABC transporter, peripl 72.5 9.1 0.00031 34.4 7.5 69 36-118 43-113 (290)
94 3ukm_A Potassium channel subfa 70.9 4.7 0.00016 37.4 5.0 56 165-227 94-149 (280)
95 1atg_A MODA, periplasmic molyb 70.7 9.3 0.00032 32.9 6.9 73 34-119 13-91 (231)
96 3cvg_A Putative metal binding 66.5 7.9 0.00027 35.8 5.7 73 34-119 34-116 (294)
97 3muq_A Uncharacterized conserv 66.2 8.7 0.0003 34.6 5.7 75 32-119 18-95 (237)
98 3ukm_A Potassium channel subfa 65.0 3.4 0.00012 38.4 2.7 63 165-234 202-271 (280)
99 3sya_A G protein-activated inw 59.9 26 0.00089 33.3 8.0 59 164-229 91-151 (340)
100 2g29_A Nitrate transport prote 58.5 66 0.0022 31.2 11.1 35 42-87 56-95 (417)
101 2zzv_A ABC transporter, solute 57.8 18 0.00063 34.5 6.7 64 37-106 54-119 (361)
102 4ecf_A ABC-type phosphate tran 56.1 25 0.00085 31.8 7.1 71 34-118 17-91 (264)
103 4gd5_A Phosphate ABC transport 54.8 28 0.00095 31.6 7.2 80 27-119 37-123 (279)
104 3onm_A Transcriptional regulat 53.9 40 0.0014 29.0 7.9 66 34-118 41-107 (238)
105 2pfy_A Putative exported prote 51.9 26 0.00088 32.4 6.5 64 37-106 22-86 (301)
106 4exl_A PBP 1, phosphate-bindin 49.1 48 0.0016 29.9 7.8 71 34-118 17-91 (265)
107 2pfz_A Putative exported prote 48.3 28 0.00096 32.2 6.2 64 37-106 21-85 (301)
108 1ixh_A Phosphate-binding prote 47.8 31 0.001 32.3 6.4 72 34-118 15-87 (321)
109 3kn3_A Putative periplasmic pr 47.0 24 0.00082 31.8 5.2 73 32-117 18-93 (242)
110 3spc_A Inward-rectifier K+ cha 46.8 41 0.0014 32.0 7.0 60 164-230 94-155 (343)
111 3um7_A Potassium channel subfa 44.5 18 0.00062 33.9 4.1 54 166-226 226-285 (309)
112 4h1x_A PBP 2, phosphate-bindin 40.7 41 0.0014 30.6 5.8 82 25-120 154-242 (265)
113 2hzl_A Trap-T family sorbitol/ 37.2 37 0.0013 32.3 5.2 52 37-94 53-104 (365)
114 3gzg_A Molybdate-binding perip 36.8 45 0.0016 29.9 5.5 70 36-118 38-113 (253)
115 1pc3_A Phosphate-binding prote 36.4 35 0.0012 32.4 4.8 49 68-118 63-114 (350)
116 3tmg_A Glycine betaine, L-prol 34.1 98 0.0034 28.1 7.4 78 35-124 31-114 (280)
117 3r26_A Molybdate-binding perip 33.6 58 0.002 28.6 5.6 73 33-118 19-97 (237)
118 3l6g_A Betaine ABC transporter 33.3 1.1E+02 0.0037 27.4 7.4 81 33-125 15-101 (256)
119 2xwv_A Sialic acid-binding per 23.5 1.3E+02 0.0043 27.8 6.2 48 37-90 23-70 (312)
120 2hxw_A Major antigenic peptide 23.4 1.1E+02 0.0036 26.4 5.4 70 35-118 15-91 (237)
121 3cij_A UPF0100 protein AF_0094 23.0 1.4E+02 0.0049 26.8 6.4 71 35-118 19-95 (295)
122 3cfx_A UPF0100 protein MA_0280 22.7 1.7E+02 0.006 26.3 6.9 71 35-118 19-95 (296)
123 3bvp_A INT, TP901-1 integrase; 22.4 92 0.0031 24.8 4.4 50 37-86 28-77 (138)
124 3cfz_A UPF0100 protein MJ1186; 22.4 1.5E+02 0.0052 26.7 6.4 72 34-118 18-95 (292)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=3.4e-48 Score=425.36 Aligned_cols=361 Identities=33% Similarity=0.592 Sum_probs=302.1
Q ss_pred eeeeEEEeccCCCeEEEecCC--CCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCcccc-CCCccchhHHHHhccc
Q psy12229 4 ITNISDSRLKQEPFVMREESE--GGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMD-ENGQWNGMIKELIEKR 80 (444)
Q Consensus 4 ~~~l~V~~~~~~Pf~~~~~~~--~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~-~ng~~~g~i~~l~~g~ 80 (444)
-++|+|++...|||.+...+. .++..++.|+++|+++++|+++|++++++..++++||... .||+|+|++++|.+|+
T Consensus 383 ~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~ 462 (823)
T 3kg2_A 383 QKTVVVTTILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGK 462 (823)
T ss_dssp CCCEEEEECCCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTS
T ss_pred CCEEEEEEecCCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhcccc
Confidence 357899999999999985321 2344589999999999999999999999999999999864 5789999999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCC-CCCcccccccccchhHHHHHHHHHHHHh------cceeccc
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPK-TPTSLFKFLTVLETGVWLCILAAYCNLD------GEQMKYL 153 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~-~~~~~~~~l~pF~~~vWi~i~~~~~~~~------~~~~~~~ 153 (444)
+|+++++++++.+|.+.+|||.||+. +++++++|++. ..++++.|++||++.+|+++++++++++ .++.+++
T Consensus 463 ~D~~~~~~~~t~~R~~~~dfs~py~~-~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~ 541 (823)
T 3kg2_A 463 ADIAIAPLTITLVREEVIDFSKPFMS-LGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYE 541 (823)
T ss_dssp CSEECSCCBCCHHHHTTEEECSCSEE-ECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC------
T ss_pred CcEEecceecchhheeeEEeccchhh-CCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 99999999999999999999999999 99999999986 4578999999999999999999988877 2334444
Q ss_pred cccCCCCCC--------C---cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchh
Q psy12229 154 IQVNPPGDI--------L---PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAA 222 (444)
Q Consensus 154 ~~~~~~~~~--------~---~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s 222 (444)
|+..+.... . ....++|+.+++++.|| ....|++.++|+++++||+++++++++|+|+|+|
T Consensus 542 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--------~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s 613 (823)
T 3kg2_A 542 WHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG--------ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 613 (823)
T ss_dssp -----------------CHHHHHHHHHHHTTTTSCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccccccccccccccccHHHHHHHHHHHHHhcC--------CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 443221110 0 12367889999999999 8899999999999999999999999999999999
Q ss_pred hhhcccCCCCCCChHHhhhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHH
Q psy12229 223 FLTVSRLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYT 302 (444)
Q Consensus 223 ~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~ 302 (444)
+||++++.++|+|++||.+++++++++..++...++|+++.. ..|+
T Consensus 614 ~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~----------------------------------~~~~ 659 (823)
T 3kg2_A 614 FLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKI----------------------------------AVFD 659 (823)
T ss_dssp HHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCC----------------------------------HHHH
T ss_pred HhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccc----------------------------------hHHH
Confidence 999999999999999999987889999988889999887531 6678
Q ss_pred HHHHHHHhcC---CCCCHHHHHHHHHhcCCCCCceEEEecccchhhhhcCC-CccEEeCCcccccceEEEecCCCchhhh
Q psy12229 303 KMWQAMKEAK---LPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTN-CDLQMVGDEFSRKPYAIAVQQDRDAREL 378 (444)
Q Consensus 303 ~~~~~~~~~~---~~~~~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~-c~l~~~~~~~~~~~~~~~~~k~sp~~~~ 378 (444)
+++..+++.. ++.+.+|+++++++.+ +.+|++.+...+.|..+++ |+++.+++.+...++++++||||||++.
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~~~ 736 (823)
T 3kg2_A 660 KMWTYMRSAEPSVFVRTTAEGVARVRKSK---GKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTP 736 (823)
T ss_dssp HHHHHHHHCSSCCCBSSHHHHHHHHHTTT---TSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSHHH
T ss_pred HHHHHHHhcCCccccCCHHHHHHHHhccC---CceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChHHHH
Confidence 8888888754 5679999999997322 3899999999999988765 9999999999999999999999999999
Q ss_pred hHHHHHHHhcCCccccCCCCCcccccccccCCCCcccCCCCC
Q psy12229 379 FCNVHANILSIPFPFIGVDGTSVCSSIFDTDGKTKVSCPLKK 420 (444)
Q Consensus 379 in~~il~l~e~G~i~~~~~~~~~~~~kw~~~~~~~~~c~~~~ 420 (444)
||++|++|+|+|++++| .++|+.+. ..|....
T Consensus 737 ~~~~il~l~e~G~~~~~-------~~~w~~~~---~~c~~~~ 768 (823)
T 3kg2_A 737 VNLAVLKLSEQGLLDKL-------KNKWWYDK---GECGAKD 768 (823)
T ss_dssp HHHHHHHHHHTTHHHHH-------HHHHHTTS---CSCSSTT
T ss_pred HHHHHHHHHhCCcHHHH-------HHhhCcCC---CCCCCCC
Confidence 99999999999999999 99999864 4787653
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.97 E-value=3.6e-30 Score=250.61 Aligned_cols=282 Identities=33% Similarity=0.619 Sum_probs=210.7
Q ss_pred eeeeEEEeccCCCeEEEecCC--CCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccC-CCccchhHHHHhccc
Q psy12229 4 ITNISDSRLKQEPFVMREESE--GGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWNGMIKELIEKR 80 (444)
Q Consensus 4 ~~~l~V~~~~~~Pf~~~~~~~--~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~-ng~~~g~i~~l~~g~ 80 (444)
.++|+|++..+|||.+..... .++..++.|+++|+++++++++|++++++..++++||.... +++|++++.+|.+|+
T Consensus 12 ~~~l~V~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~ 91 (312)
T 1yae_A 12 NRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHK 91 (312)
T ss_dssp SCEEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHHHTTS
T ss_pred CceEEEEEeccCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHHhCCC
Confidence 467999999899999986210 00112699999999999999999999999999999999876 789999999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCC-CCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPK-TPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPP 159 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~-~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~ 159 (444)
+|+++++++++++|.+.++||.||+. .+.+++++++. ....++.|+.||+.
T Consensus 92 ~D~~~~~~~~t~eR~~~~~fs~py~~-~~~~~~~~~~~~~~~~~~~~~~pf~~--------------------------- 143 (312)
T 1yae_A 92 ADLAVAPLAITYVREKVIDFSKPFMT-LGISILYRKPNGTNPGVFSFLNGGSL--------------------------- 143 (312)
T ss_dssp CSEECSSCBCCHHHHHHEEEEEEEEE-ECEEEEEEC--------------------------------------------
T ss_pred cCEEeecceechhhcceEEecceeee-cceEEEEeCCccccccceeeeccccc---------------------------
Confidence 99999999999999999999999999 99999999875 56788899888881
Q ss_pred CCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHh
Q psy12229 160 GDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDL 239 (444)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL 239 (444)
. |+ |++....+|++++||
T Consensus 144 -----------------------------~---p~------------------------------tv~~~~~~i~~~~dL 161 (312)
T 1yae_A 144 -----------------------------V---PR------------------------------GSERMESPIDSADDL 161 (312)
T ss_dssp -------------------------------------------------------------------------CCSHHHH
T ss_pred -----------------------------C---Cc------------------------------ccccccCCCCCHHHH
Confidence 1 11 445556789999999
Q ss_pred hhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHh---cCCCCC
Q psy12229 240 SKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKE---AKLPNS 316 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~---~~~~~~ 316 (444)
.++.++++|+..+++...+|.+... ..|++++..+.. .....+
T Consensus 162 ~g~~~~~vg~v~~~~~~~~l~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~ 207 (312)
T 1yae_A 162 AKQTKIEYGAVEDGATMTFFKKSKI----------------------------------STYDKMWAFMSSRRQSVLVKS 207 (312)
T ss_dssp HTCSSSEEECBTTSHHHHHHHHCCB----------------------------------HHHHHHHHHHHHTHHHHCBSS
T ss_pred hhccCceEEEEeCChHHHHHHhccC----------------------------------chHHHHHHHHHhcCCCcccCC
Confidence 8865567887777777777765321 345555554432 234679
Q ss_pred HHHHHHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCcccccceEEEecCCCchhhhhHHHHHHHhcCCccccCC
Q psy12229 317 LEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGV 396 (444)
Q Consensus 317 ~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~ 396 (444)
.++++++|.+| .+|++.+...+.|+.+++|++.++++.+...+++++++|++|+.+.||++|.+|.++|.++++
T Consensus 208 ~~~~~~~l~~G-----~Da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i- 281 (312)
T 1yae_A 208 NEEGIQRVLTS-----DYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMM- 281 (312)
T ss_dssp HHHHHHHHHHS-----SEEEEEEHHHHHHHHTTCTTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHH-
T ss_pred HHHHHHHHHcC-----CcEEEeccHHHHHHHhcCCCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHH-
Confidence 99999999998 489999999999999888999999988888899999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCCCCCCceeE
Q psy12229 397 DGTSVCSSIFDTDGKTKVSCPLKKDHVYR 425 (444)
Q Consensus 397 ~~~~~~~~kw~~~~~~~~~c~~~~~~~~~ 425 (444)
.+||+... .|+....++..
T Consensus 282 ------~~kw~~~~----~c~~~~~~~~~ 300 (312)
T 1yae_A 282 ------KEKWWRGN----GCPEEESKEAS 300 (312)
T ss_dssp ------HHHHHCCS----CC---------
T ss_pred ------HhhhcCCC----CCCCCCCccch
Confidence 99999864 89876555443
No 3
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.96 E-value=2.9e-28 Score=229.83 Aligned_cols=251 Identities=35% Similarity=0.642 Sum_probs=212.7
Q ss_pred eeeeEEEeccCCCeEEEecCC--CCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccC-CCccchhHHHHhccc
Q psy12229 4 ITNISDSRLKQEPFVMREESE--GGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDE-NGQWNGMIKELIEKR 80 (444)
Q Consensus 4 ~~~l~V~~~~~~Pf~~~~~~~--~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~-ng~~~g~i~~l~~g~ 80 (444)
-++|+|++..+|||.+...++ .++..++.|+++|+++++++++|++++++..+.++||.... +++|.+++.+|.+|+
T Consensus 3 ~~~l~v~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~ 82 (259)
T 3g3k_A 3 NRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHK 82 (259)
T ss_dssp CCCEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTS
T ss_pred CcEEEEEEecCCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCc
Confidence 467999999999999997642 12233799999999999999999999999999999998765 789999999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
+|+++++++++++|.+.++||.||+. .+.+++++++
T Consensus 83 ~D~~~~~~~~t~eR~~~~~fs~py~~-~~~~~~~~~~------------------------------------------- 118 (259)
T 3g3k_A 83 ADLAVAPLAITYVREEVIDFSKPFMT-LGISILYRKG------------------------------------------- 118 (259)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEE-ECEEEEEESS-------------------------------------------
T ss_pred ccEEEeeeEecccccceEeeeeeeee-CCEEEEEeCC-------------------------------------------
Confidence 99999999999999999999999999 9999999764
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
.+|++++||.
T Consensus 119 ----------------------------------------------------------------------~~i~~~~dL~ 128 (259)
T 3g3k_A 119 ----------------------------------------------------------------------TPIDSADDLA 128 (259)
T ss_dssp ----------------------------------------------------------------------SSCCSHHHHH
T ss_pred ----------------------------------------------------------------------ccccCHHHhc
Confidence 2478999998
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhc---CCCCCH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEA---KLPNSL 317 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~---~~~~~~ 317 (444)
++..+.+|+..++....++.+... ..|..++..++.. ....+.
T Consensus 129 g~~~~~ig~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 174 (259)
T 3g3k_A 129 KQTKIEYGAVEDGATMTFFKRSKI----------------------------------STYDKMWAFMSSRRQSVLVKSN 174 (259)
T ss_dssp TCSSSEEEEETTSHHHHHHHHCCS----------------------------------HHHHHHHHHHHHTHHHHEESSH
T ss_pred cCCCceEEEecCcHHHHHHhhccc----------------------------------hhHHHHHHHHHhcCCCcccCCH
Confidence 866677888888888888776431 3445555544432 235799
Q ss_pred HHHHHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCcccccceEEEecCCCchhhhhHHHHHHHhcCCccccCCC
Q psy12229 318 EEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGVD 397 (444)
Q Consensus 318 ~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~ 397 (444)
++++++|.+| .+|++.+...+.|+.+++|++.+++..+...+++++++|++|+.+.||++|.+|.++|.++++
T Consensus 175 ~~~~~~l~~g-----~da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i-- 247 (259)
T 3g3k_A 175 EEGIQRVLTS-----DYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMM-- 247 (259)
T ss_dssp HHHHHHHHHS-----SEEEEEEHHHHHHHHHHCTTEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHH--
T ss_pred HHHHHHHHhC-----CeEEEechHHHHHHhcCCceEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHH--
Confidence 9999999998 589999999999999888999999998889999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCcccCCC
Q psy12229 398 GTSVCSSIFDTDGKTKVSCPL 418 (444)
Q Consensus 398 ~~~~~~~kw~~~~~~~~~c~~ 418 (444)
.+|||+.. .|++
T Consensus 248 -----~~kw~~~~----~c~~ 259 (259)
T 3g3k_A 248 -----KEKWWRGN----GCPE 259 (259)
T ss_dssp -----HHHHHCC------CC-
T ss_pred -----HHhhcCCC----CCCC
Confidence 99999964 6874
No 4
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.95 E-value=1.1e-27 Score=230.97 Aligned_cols=249 Identities=28% Similarity=0.472 Sum_probs=203.9
Q ss_pred eeeeEEEeccCCCeEEEecCCCCC---------------------------------ceeeeecHHHHHHHHHHHcCCeE
Q psy12229 4 ITNISDSRLKQEPFVMREESEGGG---------------------------------GVKYKGYCIDLIEEIRKLVGFEY 50 (444)
Q Consensus 4 ~~~l~V~~~~~~Pf~~~~~~~~~~---------------------------------~~~~~G~~~dil~~la~~lnft~ 50 (444)
.++|+|+|...+||++....+.++ ..++.|+++|+++++++++|+++
T Consensus 3 ~~~l~v~t~~~~P~v~~~~~~~~~~c~~~~~~~~~~~~~~l~vg~~~~~~P~~~~~~~g~~~G~~vDll~~ia~~lg~~~ 82 (292)
T 1pb7_A 3 STRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTY 82 (292)
T ss_dssp -CCEEEEECCBTTTBEEEECCTTSSCCCCBCTTSCBCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHHTCCE
T ss_pred CcEEEEEEEeeCCeEEEecCCCCCccccccccccccccceeecccCCCCCCccccccccCcceeHHHHHHHHHHHcCceE
Confidence 368999999999999998754221 11378999999999999999999
Q ss_pred EEEEcCCCCCcccc-CC----CccchhHHHHhcccccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccc
Q psy12229 51 EIFVAPDNSFGNMD-EN----GQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFK 125 (444)
Q Consensus 51 ~~~~~~~~~~g~~~-~n----g~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~ 125 (444)
+++..++++||... .| ++|++++++|.+|++|+++++++++++|.+.++||.||+. .+..++++++.
T Consensus 83 ~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~-~~~~i~~~~~~------- 154 (292)
T 1pb7_A 83 EVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKY-QGLTILVKKGT------- 154 (292)
T ss_dssp EEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHHHTTEEECSCSEE-EEEEEEEETTC-------
T ss_pred EEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEeeeEecHHHhcceEechhhHh-cCeEEEEECCc-------
Confidence 99999999999875 23 5899999999999999999999999999999999999999 99999998752
Q ss_pred cccccchhHHHHHHHHHHHHhcceeccccccCCCCCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHH
Q psy12229 126 FLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATW 205 (444)
Q Consensus 126 ~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w 205 (444)
T Consensus 155 -------------------------------------------------------------------------------- 154 (292)
T 1pb7_A 155 -------------------------------------------------------------------------------- 154 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhCC---ceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCC
Q psy12229 206 WLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQY---KIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSL 282 (444)
Q Consensus 206 ~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (444)
+|++++||..++ +..+++..++....++++..
T Consensus 155 --------------------------~i~~~~dl~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------- 189 (292)
T 1pb7_A 155 --------------------------RITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQV------------------- 189 (292)
T ss_dssp --------------------------CCCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCG-------------------
T ss_pred --------------------------CCCCCcCccccCcccceEEEEEcCchHHHHhhhcc-------------------
Confidence 244556665211 23457778887777776421
Q ss_pred cHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCcccc
Q psy12229 283 SDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFSR 362 (444)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~~ 362 (444)
.+.+++..+ +.....+.++++++|.+|+ .+|++.+...+.|+.+++|++.++++.+..
T Consensus 190 -----------------~~~~~~~~~-~~~~~~~~~~~~~~l~~G~----vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~ 247 (292)
T 1pb7_A 190 -----------------ELSTMYRHM-EKHNYESAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKCDLVTTGELFFR 247 (292)
T ss_dssp -----------------GGHHHHHHH-TTTCBSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTTEEECSSCSEE
T ss_pred -----------------cHHHHHHHH-HhhcCCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHhcCCCEEEcCccccC
Confidence 112222222 2234679999999999997 899999999999999988999999988888
Q ss_pred cceEEEecCCCchhhhhHHHHHHHhcCCccccCCCCCcccccccccCCCCcccCCC
Q psy12229 363 KPYAIAVQQDRDARELFCNVHANILSIPFPFIGVDGTSVCSSIFDTDGKTKVSCPL 418 (444)
Q Consensus 363 ~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~~~~~~~~kw~~~~~~~~~c~~ 418 (444)
.+++++++|++|+++.||++|.+|.++|.++++ .+||+... +|+.
T Consensus 248 ~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l-------~~kw~~~~----~c~~ 292 (292)
T 1pb7_A 248 SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDL-------DKTWVRYQ----ECDS 292 (292)
T ss_dssp EEECCEEETTCSSHHHHHHHHHHHHHSSHHHHH-------HHHHTSSS----CCCC
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHH-------HHhhCCCC----CCCC
Confidence 899999999999999999999999999999999 99999864 7863
No 5
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.95 E-value=1.2e-27 Score=231.04 Aligned_cols=246 Identities=23% Similarity=0.458 Sum_probs=204.0
Q ss_pred eeeeEEEeccCCCeEEEecCCCCCc-------------------------------------eeeeecHHHHHHHHHHHc
Q psy12229 4 ITNISDSRLKQEPFVMREESEGGGG-------------------------------------VKYKGYCIDLIEEIRKLV 46 (444)
Q Consensus 4 ~~~l~V~~~~~~Pf~~~~~~~~~~~-------------------------------------~~~~G~~~dil~~la~~l 46 (444)
.++|||+|.+.|||++..+.+.+|. .++.|+++|+++++++++
T Consensus 4 ~~~l~v~t~~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~G~~vdll~~ia~~l 83 (294)
T 2rc8_A 4 KLHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDM 83 (294)
T ss_dssp CEEEEEEECCBTTTBEEECCCTTSCCTTSEEEECCCCCCHHHHHHHHHHHHSSSCCCCGGGEEEEESHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeeCCcEEEecCCCCCcCccCcccccccccccccchhhhhhcccCCCCCCccccCCceEEhHHHHHHHHHHc
Confidence 5799999999999999986543221 137899999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEEEEEeCCCCCCccccc
Q psy12229 47 GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKF 126 (444)
Q Consensus 47 nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~ 126 (444)
|++++++..++++||.. .+++|++++++|.+|++|+++++++++.+|.+.++||.||+. .+..++++++
T Consensus 84 g~~~~~~~~~~~~~g~~-~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~-~~~~i~~~~~--------- 152 (294)
T 2rc8_A 84 NFDFDLYIVGDGKYGAW-KNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFS-TSLGILVRTR--------- 152 (294)
T ss_dssp TEEEEEEECTTCCCCCE-ETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEE-EEEEEEEETT---------
T ss_pred CCcEEEEECCCCccccc-CCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHh-cceEEEEECC---------
Confidence 99999999999999985 478999999999999999999999999999999999999999 9999999876
Q ss_pred ccccchhHHHHHHHHHHHHhcceeccccccCCCCCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHH
Q psy12229 127 LTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWW 206 (444)
Q Consensus 127 l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~ 206 (444)
T Consensus 153 -------------------------------------------------------------------------------- 152 (294)
T 2rc8_A 153 -------------------------------------------------------------------------------- 152 (294)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhh---CCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCc
Q psy12229 207 LFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSK---QYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLS 283 (444)
Q Consensus 207 l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (444)
...|++++||.. +.+.++|+..++....++++.
T Consensus 153 -----------------------~~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~--------------------- 188 (294)
T 2rc8_A 153 -----------------------GTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS--------------------- 188 (294)
T ss_dssp -----------------------SCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHH---------------------
T ss_pred -----------------------CCCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHH---------------------
Confidence 225677778762 234689999999988888753
Q ss_pred HHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHHHHHh--cCCCCCceEEEecccchhhhhcC--CCccEEeCCc
Q psy12229 284 DVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQRVRD--SKSSSEGFGYLGDATDIRYLVMT--NCDLQMVGDE 359 (444)
Q Consensus 284 ~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~v~~--~~~~~~~~a~i~d~~~~~y~~~~--~c~l~~~~~~ 359 (444)
++++...++. ....+.++++++|.+ |+ .+|++.+...+.|+.++ .|++.++++.
T Consensus 189 -----------------~~~~~~~i~~-~~~~~~~~~~~~l~~~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~ 246 (294)
T 2rc8_A 189 -----------------FPEMHEYMRR-YNVPATPDGVQYLKNDPEK----LDAFIMDKALLDYEVSIDADCKLLTVGKP 246 (294)
T ss_dssp -----------------CHHHHHHHGG-GCBSSHHHHHHHHHSSSCC----CSEEEEEHHHHHHHHHTCSSSCEEECSCC
T ss_pred -----------------HHHHHHHHHH-hcCCCHHHHHHHHHhccCc----eeEEEecHHHHHHHHhhCCCCCEEEcCCc
Confidence 1222212211 124689999999999 86 89999999999998874 5789999888
Q ss_pred ccccceEEEecCCCchhhhhHHHHHHHhcCCccccCCCCCcccccccccCCCCcccCC
Q psy12229 360 FSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGVDGTSVCSSIFDTDGKTKVSCP 417 (444)
Q Consensus 360 ~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~~~~~~~~kw~~~~~~~~~c~ 417 (444)
+...+++++++|++++++.||++|.+|.++|.++++ .+||++.. .|+
T Consensus 247 ~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l-------~~kw~~~~----~c~ 293 (294)
T 2rc8_A 247 FAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVL-------HDKWYKVV----PCG 293 (294)
T ss_dssp EEEEEECCEECTTCTHHHHHHHHHHHHHHTTHHHHH-------HHHHCCC--------
T ss_pred ccccceEEEecCCCHHHHHHHHHHHHHHhCCCHHHH-------HHhhcCCC----CCC
Confidence 888899999999999999999999999999999999 99999864 686
No 6
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.94 E-value=4.5e-26 Score=218.78 Aligned_cols=249 Identities=25% Similarity=0.442 Sum_probs=194.8
Q ss_pred eeeEEEeccCCCeEEEecCCC-CC-------------------------ceeeeecHHHHHHHHHHHcCCeEEEEEcCCC
Q psy12229 5 TNISDSRLKQEPFVMREESEG-GG-------------------------GVKYKGYCIDLIEEIRKLVGFEYEIFVAPDN 58 (444)
Q Consensus 5 ~~l~V~~~~~~Pf~~~~~~~~-~~-------------------------~~~~~G~~~dil~~la~~lnft~~~~~~~~~ 58 (444)
++|+|+|.+.|||++...... +| ..++.|+++|+++++++++|++++++..+++
T Consensus 5 ~~l~v~t~~~~P~v~~~~~~~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~ 84 (284)
T 2a5s_A 5 NHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNG 84 (284)
T ss_dssp CCEEEEECCBTTTBEEEECCCC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSS
T ss_pred CEEEEEEEccCCeEEeeccCCCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCC
Confidence 689999999999999876431 11 1258999999999999999999999999989
Q ss_pred CCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHH
Q psy12229 59 SFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCI 138 (444)
Q Consensus 59 ~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i 138 (444)
+||.. .+++|++++++|.+|++|+++++++++.+|.+.++||.||+. ++..++++++.....+.
T Consensus 85 ~~g~~-~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~-~~~~~~~~~~~~~~~~~-------------- 148 (284)
T 2a5s_A 85 KHGKK-VNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVE-TGISVMVSRGTQVTGLS-------------- 148 (284)
T ss_dssp SSCCE-ETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEE-ECEEEEEETTCCCCSTT--------------
T ss_pred ccCcc-cCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchh-cCEEEEEECCccccccc--------------
Confidence 99986 578999999999999999999999999999999999999999 99999998763211000
Q ss_pred HHHHHHHhcceeccccccCCCCCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhh
Q psy12229 139 LAAYCNLDGEQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTA 218 (444)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a 218 (444)
T Consensus 149 -------------------------------------------------------------------------------- 148 (284)
T 2a5s_A 149 -------------------------------------------------------------------------------- 148 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhcccCCCCCCChHHhhhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcc
Q psy12229 219 NLAAFLTVSRLDTPIESLDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVS 298 (444)
Q Consensus 219 ~L~s~Lt~~~~~~~I~sl~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (444)
....++++||. .+.++|+..+++....+...
T Consensus 149 -----------dl~~~~~~~l~--~~~~vg~v~~~s~~~~l~~~------------------------------------ 179 (284)
T 2a5s_A 149 -----------DKKFQRPHDYS--PPFRFGTVPNGSTERNIRNN------------------------------------ 179 (284)
T ss_dssp -----------SHHHHSGGGSS--SCCCEECCTTSHHHHHHHTT------------------------------------
T ss_pred -----------ccccCChhHcC--CCceEEEEeCCchHHHHHHH------------------------------------
Confidence 00011333442 13568877666656555431
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCceEEEecccchhhhhcCC--CccEEeC--CcccccceEEEecCCCc
Q psy12229 299 DKYTKMWQAMKEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTN--CDLQMVG--DEFSRKPYAIAVQQDRD 374 (444)
Q Consensus 299 ~~y~~~~~~~~~~~~~~~~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~--c~l~~~~--~~~~~~~~~~~~~k~sp 374 (444)
|+++...+... ...+.++++++|.+|+ .+|++.+...+.|+.++. |++.+++ ..+...+++++++|+++
T Consensus 180 --~~~~~~~i~~~-~~~~~~~~l~~l~~G~----vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~~~ 252 (284)
T 2a5s_A 180 --YPYMHQYMTRF-NQRGVEDALVSLKTGK----LDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSP 252 (284)
T ss_dssp --CHHHHHHHGGG-CCSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCT
T ss_pred --HHHHHHHHHhc-cCCCHHHHHHHHHcCC----eeEEEEchHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCCCH
Confidence 22221112111 1358999999999997 899999999999988754 7888874 56777889999999999
Q ss_pred hhhhhHHHHHHHhcCCccccCCCCCcccccccccCCCCcccCC
Q psy12229 375 ARELFCNVHANILSIPFPFIGVDGTSVCSSIFDTDGKTKVSCP 417 (444)
Q Consensus 375 ~~~~in~~il~l~e~G~i~~~~~~~~~~~~kw~~~~~~~~~c~ 417 (444)
+++.||++|.++.++|.++++ .+||+.. .|+
T Consensus 253 l~~~ln~~l~~l~~~g~~~~i-------~~kw~~~-----~c~ 283 (284)
T 2a5s_A 253 WKRQIDLALLQFVGDGEMEEL-------ETLWLTG-----ICH 283 (284)
T ss_dssp THHHHHHHHHHHHHHTHHHHH-------HHHHTCC-----CCC
T ss_pred HHHHHHHHHHHHHhCChHHHH-------HHHhhhc-----cCC
Confidence 999999999999999999999 9999975 675
No 7
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.94 E-value=1.3e-25 Score=211.77 Aligned_cols=256 Identities=31% Similarity=0.566 Sum_probs=203.1
Q ss_pred eeeEEEeccCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEE
Q psy12229 5 TNISDSRLKQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIA 84 (444)
Q Consensus 5 ~~l~V~~~~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~ 84 (444)
++|+|++.++|||.+.+.+..++..++.|+++|+++++++++|++++++..+++.||....+++|.+++.+|.+|++|++
T Consensus 3 ~~l~v~~~~~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g~~D~~ 82 (265)
T 2v3u_A 3 VVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIG 82 (265)
T ss_dssp CEEEEEECCBTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTSCSEE
T ss_pred eEEEEEEeccCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcCCcCeE
Confidence 57999999999999998652121127999999999999999999999999988899998788899999999999999999
Q ss_pred eecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCCCc
Q psy12229 85 LGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDILP 164 (444)
Q Consensus 85 ~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (444)
+++++++++|.+.++||.||+. .+.++++++.
T Consensus 83 ~~~~~~t~~R~~~~~fs~p~~~-~~~~~~~~~~----------------------------------------------- 114 (265)
T 2v3u_A 83 ISALTITPDRENVVDFTTRYMD-YSVGVLLRRG----------------------------------------------- 114 (265)
T ss_dssp CSSCBCCHHHHTTEEECSCSEE-ECEEEEEETT-----------------------------------------------
T ss_pred EeeeEeehhhhccccccceeee-ccEEEEEECC-----------------------------------------------
Confidence 9999999999999999999999 8999999764
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhCCc
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQYK 244 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~~~ 244 (444)
.+|++++||.++-+
T Consensus 115 ------------------------------------------------------------------~~i~~~~dL~~~v~ 128 (265)
T 2v3u_A 115 ------------------------------------------------------------------TSIQSLQDLSKQTD 128 (265)
T ss_dssp ------------------------------------------------------------------CCCCSHHHHHTCSS
T ss_pred ------------------------------------------------------------------CCccchhhhhhhhc
Confidence 24788999984323
Q ss_pred eeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHh----cCCCCCHHHH
Q psy12229 245 IQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKE----AKLPNSLEEA 320 (444)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~----~~~~~~~~e~ 320 (444)
+..|...+.....++++.. +...+ ....|++++..++. .....+.+++
T Consensus 129 v~~g~~~~~~~~~~l~~~~--------------------------~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 180 (265)
T 2v3u_A 129 IPYGTVLDSAVYQHVRMKG--------------------------LNPFE--RDSMYSQMWRMINRSNGSENNVLESQAG 180 (265)
T ss_dssp SCEECBTTSHHHHHHHHHH--------------------------TCTTC--SCTHHHHHHHHHCC-----CCBSSHHHH
T ss_pred EEEEEeccHHHHHHHHhcC--------------------------CCccc--ccHHHHHHHHHHHhhcCcccccCCHHHH
Confidence 4556556566666665421 00000 11346666655542 2346799999
Q ss_pred HHHHHhcCCCCCceEEEecccchhhhhcC--CCccEEeCCcccccceEEEecCCCchhhhhHHHHHHHhcCCccccCCCC
Q psy12229 321 VQRVRDSKSSSEGFGYLGDATDIRYLVMT--NCDLQMVGDEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 321 ~~~v~~~~~~~~~~a~i~d~~~~~y~~~~--~c~l~~~~~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+++|.+|+ . |++.+...+.|+.++ .|++.++++.+...+++++++|++|+.+.||++|.+|.++|.++++
T Consensus 181 ~~~l~~G~----~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i--- 252 (265)
T 2v3u_A 181 IQKVKYGN----Y-AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDIL--- 252 (265)
T ss_dssp HHHHHHSS----C-EEEEEHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHH---
T ss_pred HHHHHcCC----E-EEEEcchHHHHHHhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHH---
Confidence 99999996 6 899998888888763 4679999888888889999999999999999999999999999999
Q ss_pred CcccccccccCCCCcccCC
Q psy12229 399 TSVCSSIFDTDGKTKVSCP 417 (444)
Q Consensus 399 ~~~~~~kw~~~~~~~~~c~ 417 (444)
.+||+... ..|+
T Consensus 253 ----~~kw~~~~---~~c~ 264 (265)
T 2v3u_A 253 ----KHKWWPKN---GQCD 264 (265)
T ss_dssp ----HHHHCCCC---CC--
T ss_pred ----HhhcCCCc---CcCC
Confidence 99999864 4775
No 8
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.94 E-value=1.8e-25 Score=211.06 Aligned_cols=252 Identities=31% Similarity=0.558 Sum_probs=204.4
Q ss_pred ceeeeEEEeccCCCeEEEecCC--CCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCC-ccchhHHHHhcc
Q psy12229 3 TITNISDSRLKQEPFVMREESE--GGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENG-QWNGMIKELIEK 79 (444)
Q Consensus 3 ~~~~l~V~~~~~~Pf~~~~~~~--~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng-~~~g~i~~l~~g 79 (444)
.-++|+|.+.++|||.+.+.++ ..+..++.|+++|+++++++++|++++++..+.++||...+++ +|.+++.+|.+|
T Consensus 2 ~~~~l~v~~~~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g 81 (263)
T 1mqi_A 2 ANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYG 81 (263)
T ss_dssp -CCCEEEEECCBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTT
T ss_pred CCeEEEEEEecCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHHcC
Confidence 3467999999999999987530 0011269999999999999999999999999888999888777 799999999999
Q ss_pred cccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCC
Q psy12229 80 RADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPP 159 (444)
Q Consensus 80 ~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~ 159 (444)
++|++++++..+++|.+.++||.||+. ...++++++.
T Consensus 82 ~~D~~~~~~~~t~~R~~~~~fs~p~~~-~~~~~~~~~~------------------------------------------ 118 (263)
T 1mqi_A 82 KADIAIAPLTITLVREEVIDFSKPFMS-LGISIMIKKG------------------------------------------ 118 (263)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEE-ECEEEEEETT------------------------------------------
T ss_pred CcCEEEEeeEecHHHHhhcccccceec-ccEEEEEcCc------------------------------------------
Confidence 999999899999999999999999999 9999999764
Q ss_pred CCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHh
Q psy12229 160 GDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDL 239 (444)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL 239 (444)
.+|++++||
T Consensus 119 -----------------------------------------------------------------------~~i~~~~dL 127 (263)
T 1mqi_A 119 -----------------------------------------------------------------------TPIESAEDL 127 (263)
T ss_dssp -----------------------------------------------------------------------CSCCSHHHH
T ss_pred -----------------------------------------------------------------------cccCCHHHH
Confidence 247899999
Q ss_pred hhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhc---CCCCC
Q psy12229 240 SKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEA---KLPNS 316 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~---~~~~~ 316 (444)
.++....+|+...++...++.+.. ...|++++..++.. ....+
T Consensus 128 ~g~~~~~ig~v~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T 1mqi_A 128 SKQTEIAYGTLDSGSTKEFFRRSK----------------------------------IAVFDKMWTYMRSAEPSVFVRT 173 (263)
T ss_dssp HTCSSSEEECBSSSHHHHHHHHCC----------------------------------SHHHHHHHHHHHHCSSCCCBSS
T ss_pred hcccCeeEEEEeccHHHHHHHhcc----------------------------------chhHHHHHHHHhhCCCceecCC
Confidence 876444467565555555554321 03355555555432 34678
Q ss_pred HHHHHHHH--HhcCCCCCceEEEecccchhhhhcCC-CccEEeCCcccccceEEEecCCCchhhhhHHHHHHHhcCCccc
Q psy12229 317 LEEAVQRV--RDSKSSSEGFGYLGDATDIRYLVMTN-CDLQMVGDEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPF 393 (444)
Q Consensus 317 ~~e~~~~v--~~~~~~~~~~a~i~d~~~~~y~~~~~-c~l~~~~~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~ 393 (444)
.++++++| .+| .+|++.+...+.|+.++. +++.++++.+...+++++++|++++.+.||++|.+|.++|.++
T Consensus 174 ~~~~~~~l~~~~g-----~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~ 248 (263)
T 1mqi_A 174 TAEGVARVRKSKG-----KYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLD 248 (263)
T ss_dssp HHHHHHHHHHTTT-----SEEEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhhcCC-----cEEEEechHHHHHHHhcCCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHH
Confidence 99999999 776 579999988888888754 5788888888888899999999999999999999999999999
Q ss_pred cCCCCCcccccccccCCCCcccCC
Q psy12229 394 IGVDGTSVCSSIFDTDGKTKVSCP 417 (444)
Q Consensus 394 ~~~~~~~~~~~kw~~~~~~~~~c~ 417 (444)
++ .+||+... ..|+
T Consensus 249 ~i-------~~k~~~~~---~~C~ 262 (263)
T 1mqi_A 249 KL-------KNKWWYDK---GECG 262 (263)
T ss_dssp HH-------HHHHHTTT---CSCC
T ss_pred HH-------HHHHcCCC---CCCC
Confidence 99 99999864 5887
No 9
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.89 E-value=1.1e-23 Score=197.17 Aligned_cols=226 Identities=14% Similarity=0.192 Sum_probs=181.3
Q ss_pred ceeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhccc
Q psy12229 3 TITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80 (444)
Q Consensus 3 ~~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~ 80 (444)
...+|+|++. ++|||.+.+.++ ++.|+++|+++++++++ |++++++.. +|.+++.+|.+|+
T Consensus 7 ~~~tl~vg~~~~~pP~~~~d~~G-----~~~G~~vdl~~~ia~~l~g~~~~~~~~------------~~~~~~~~l~~g~ 69 (243)
T 4gvo_A 7 KVQTITVGTGTQFPNVCFLDENG-----KLTGYDVELVKEIDKRLPGYKFKFKTM------------DFSNLLVSLGAGK 69 (243)
T ss_dssp -CEEEEEEECSEETTTEEECTTS-----CEESHHHHHHHHHHHTCTTEEEEEEEC------------CGGGHHHHHHTTS
T ss_pred cCCeEEEEECCCCCCeEEECCCC-----cEEEhHHHHHHHHHHhccCCeEEEEEC------------CHHHHHHHHHCCC
Confidence 3568999764 699999998777 69999999999999998 899999865 6899999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
+|+++++++.|++|.+.++||.|++......+++++.
T Consensus 70 ~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------- 106 (243)
T 4gvo_A 70 VDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDS------------------------------------------- 106 (243)
T ss_dssp CSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETT-------------------------------------------
T ss_pred CCEecccCCCCHHHhhhhhhhhhhcccccceEEEecc-------------------------------------------
Confidence 9999999999999999999999977613444444433
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
...|++++||.
T Consensus 107 ---------------------------------------------------------------------~~~~~~~~dL~ 117 (243)
T 4gvo_A 107 ---------------------------------------------------------------------NNSINSTKDLA 117 (243)
T ss_dssp ---------------------------------------------------------------------CCSCSSGGGGT
T ss_pred ---------------------------------------------------------------------ccccCchHHhc
Confidence 45688999997
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEA 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~ 320 (444)
+ .++++..++....+++...... . .... ......+.+++
T Consensus 118 g---~~v~v~~gs~~~~~~~~~~~~~----------~----------~~~~------------------~~~~~~~~~~~ 156 (243)
T 4gvo_A 118 G---KRVITSATSNGALVLKKINEEQ----------G----------NNFE------------------IAYEGQGSNDT 156 (243)
T ss_dssp T---CEEEECTTCHHHHHHHHHHHHT----------T----------SCSE------------------EEECCSGGGSH
T ss_pred C---CeEEEecCchHHHHHHHHHHhc----------c----------ccce------------------eccccCChHHH
Confidence 6 4789888887777766432100 0 0000 00013477889
Q ss_pred HHHHHhcCCCCCceEEEecccchhhhhcCC-CccEEeCCcccccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCCCC
Q psy12229 321 VQRVRDSKSSSEGFGYLGDATDIRYLVMTN-CDLQMVGDEFSRKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 321 ~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~-c~l~~~~~~~~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+++|..|+ .+|++.+...+.|+.++. .++.++++.+...+++++++|++| +.+.||++|.+|.++|.++++
T Consensus 157 ~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i--- 229 (243)
T 4gvo_A 157 ANQLKTGR----ADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKL--- 229 (243)
T ss_dssp HHHHHHTS----CSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHH---
T ss_pred HHHHHcCC----ccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHH---
Confidence 99999998 889999988888888754 367778887888889999999986 999999999999999999999
Q ss_pred CcccccccccC
Q psy12229 399 TSVCSSIFDTD 409 (444)
Q Consensus 399 ~~~~~~kw~~~ 409 (444)
.+|||+.
T Consensus 230 ----~~kw~g~ 236 (243)
T 4gvo_A 230 ----SEKWLGA 236 (243)
T ss_dssp ----HHHHHCG
T ss_pred ----HHHHCCC
Confidence 9999975
No 10
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.89 E-value=7.8e-23 Score=191.25 Aligned_cols=223 Identities=20% Similarity=0.267 Sum_probs=180.4
Q ss_pred eeeeEEEe-ccCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSR-LKQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~-~~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
.++|+|++ .++|||.+....+ +..++.|+++|+++++++++|++++++.. .|.+++.+|.+|++|
T Consensus 11 ~g~L~Vg~~~~~pP~~~~~~~d--~~g~~~G~~vdl~~~ia~~lg~~~~~~~~------------~~~~~~~~l~~g~~d 76 (243)
T 4h5g_A 11 KGKLVVATSPDYAPFEFQSLVD--GKNQVVGADIDMAQAIADELGVKLEILSM------------SFDNVLTSLQTGKAD 76 (243)
T ss_dssp HTEEEEEECCCBTTTBEEEEET--TEEEEESHHHHHHHHHHHHHTSEEEEEEC------------CGGGHHHHHHTTSCS
T ss_pred CCEEEEEECCCCCCcEeeeccC--CCCcEEEeHHHHHHHHHHHhCCceEEecc------------cHHHHHHHHHcCCCC
Confidence 46899966 4799999875311 11279999999999999999999999865 689999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
+++++++.|++|.+.++||.||+. ...++++++.+
T Consensus 77 ~~~~~~~~t~eR~~~~~fs~py~~-~~~~~~v~~~~-------------------------------------------- 111 (243)
T 4h5g_A 77 LAVAGISATDERKEVFDFSIPYYE-NKISFLVHKAD-------------------------------------------- 111 (243)
T ss_dssp EECSSCBCCHHHHTTEEECSCSBC-CCEEEEEEGGG--------------------------------------------
T ss_pred cccccccCChhHccEEEccCcccc-Ccccccccccc--------------------------------------------
Confidence 999999999999999999999999 99999997652
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
...+++++||.+.
T Consensus 112 -------------------------------------------------------------------~~~~~~~~dl~g~ 124 (243)
T 4h5g_A 112 -------------------------------------------------------------------VEKYKDLTSLESA 124 (243)
T ss_dssp -------------------------------------------------------------------TTTCCSHHHHHTS
T ss_pred -------------------------------------------------------------------cccccccccCCCC
Confidence 3467889999774
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
++++..++....++..... ..++ ...++..++++
T Consensus 125 ---~i~v~~g~~~~~~l~~~~~----------------------~~~i---------------------~~~~~~~~~~~ 158 (243)
T 4h5g_A 125 ---NIAAQKGTVPESMVKEQLP----------------------KAQL---------------------TSLTNMGEAVN 158 (243)
T ss_dssp ---EEEEETTSHHHHHHHHHCT----------------------TSEE---------------------EEESCHHHHHH
T ss_pred ---EEEecCCcHHHHHHHHhcc----------------------ccee---------------------EEeCCHHHHHH
Confidence 7899999888877764310 0111 12458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCCCccEE--eC-CcccccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCCCC
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQM--VG-DEFSRKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~--~~-~~~~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+|.+|+ .+|++.+...+.++..++..+.. +. ......+++++++|++| +++.||++|.+|.++|.++++
T Consensus 159 ~l~~Gr----vD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i--- 231 (243)
T 4h5g_A 159 ELQAGK----IDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQKLKDEGTYQSY--- 231 (243)
T ss_dssp HHHHTS----CSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHHHHHHHTHHHHH---
T ss_pred HHHcCC----ccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHHHHHHHCCHHHHH---
Confidence 999997 89999998888777765543332 22 34455678999999997 999999999999999999999
Q ss_pred CcccccccccC
Q psy12229 399 TSVCSSIFDTD 409 (444)
Q Consensus 399 ~~~~~~kw~~~ 409 (444)
.+||+.-
T Consensus 232 ----~~Kw~~~ 238 (243)
T 4h5g_A 232 ----LEKAASL 238 (243)
T ss_dssp ----HHHHTTS
T ss_pred ----HHHhcCC
Confidence 9999864
No 11
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.88 E-value=6.1e-22 Score=184.65 Aligned_cols=226 Identities=23% Similarity=0.280 Sum_probs=191.5
Q ss_pred CceeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccc
Q psy12229 2 STITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80 (444)
Q Consensus 2 ~~~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~ 80 (444)
.....|+|++. ++|||.+.+.++ +..|+++|+++++++++|++++++.. +|..++.++.+|+
T Consensus 2 ~~~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~ 64 (245)
T 3k4u_A 2 SLRGELRVGLEPGYLPFEMKDKKG-----NVIGFDVDLAREMAKAMGVKLKLVPT------------SWDGLIPGLVTEK 64 (245)
T ss_dssp -CCSEEEEEECTTSTTTCEEETTT-----EEESHHHHHHHHHHHHHTCEEEEEEC------------CGGGHHHHHHTTS
T ss_pred CcCCeEEEEECCCcCCeeEECCCC-----CCccchHHHHHHHHHHhCCeEEEEEc------------cHHHHHHHHhCCC
Confidence 45678999888 999999998766 79999999999999999999999865 6899999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
+|++++++..+.+|.+.+.||.||+. ...++++++..
T Consensus 65 ~D~~~~~~~~t~~r~~~~~~s~p~~~-~~~~~~~~~~~------------------------------------------ 101 (245)
T 3k4u_A 65 FDIIISGMTISQERNLRVNFVEPYIV-VGQSLLVKKGL------------------------------------------ 101 (245)
T ss_dssp CSEECSSCBCCHHHHTTSEECSCSEE-ECEEEEEETTT------------------------------------------
T ss_pred cCEEEecCcCCHHHHhhcCcchhhhe-eceEEEEECCc------------------------------------------
Confidence 99998899999999999999999999 99999998762
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
..+|++++||.
T Consensus 102 ---------------------------------------------------------------------~~~i~~~~dL~ 112 (245)
T 3k4u_A 102 ---------------------------------------------------------------------EKGVKSYKDLD 112 (245)
T ss_dssp ---------------------------------------------------------------------TTTCCSGGGGC
T ss_pred ---------------------------------------------------------------------ccccCCHHHhc
Confidence 34688999997
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEA 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~ 320 (444)
+ .+.++|+..++....++..... ..++ ....+.+++
T Consensus 113 ~-~g~~i~v~~g~~~~~~l~~~~~----------------------~~~~---------------------~~~~~~~~~ 148 (245)
T 3k4u_A 113 K-PELTLVTKFGVSAEYAAKRLFK----------------------NAKL---------------------KTYDTEAEA 148 (245)
T ss_dssp C-SSCEEEEETTSHHHHHHHHHCS----------------------SSEE---------------------EEESSHHHH
T ss_pred c-CCcEEEEeCCcHHHHHHHhhCC----------------------cCCE---------------------EEeCCHHHH
Confidence 4 2458999999888887765310 0111 124589999
Q ss_pred HHHHHhcCCCCCceEEEecccchhhhhcCC--CccEEeCCcccccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCCC
Q psy12229 321 VQRVRDSKSSSEGFGYLGDATDIRYLVMTN--CDLQMVGDEFSRKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGVD 397 (444)
Q Consensus 321 ~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~--c~l~~~~~~~~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~ 397 (444)
+++|.+|+ .+|++.+...+.+..++. ..+..+...+...+++++++|++| +.+.||++|.++.++|.++++
T Consensus 149 ~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i-- 222 (245)
T 3k4u_A 149 VQEVLNGK----ADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDEL-- 222 (245)
T ss_dssp HHHHHSSS----SEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHHHHH--
T ss_pred HHHHHcCC----CcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHHHHHHhCcHHHHH--
Confidence 99999997 999999988888886643 467778888888899999999997 999999999999999999999
Q ss_pred CCcccccccccCCC
Q psy12229 398 GTSVCSSIFDTDGK 411 (444)
Q Consensus 398 ~~~~~~~kw~~~~~ 411 (444)
.+||++..+
T Consensus 223 -----~~k~~~~~~ 231 (245)
T 3k4u_A 223 -----YERWFVDTK 231 (245)
T ss_dssp -----HHHHHTCCS
T ss_pred -----HHHhcCccc
Confidence 999999763
No 12
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.87 E-value=1e-21 Score=182.09 Aligned_cols=214 Identities=17% Similarity=0.214 Sum_probs=179.5
Q ss_pred CceeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccc
Q psy12229 2 STITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80 (444)
Q Consensus 2 ~~~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~ 80 (444)
+.-++|+|++. ++|||.+.+.++ +..|+++|+++++++++|++++++.. +|..++.++.+|+
T Consensus 2 a~a~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~ 64 (232)
T 3i6v_A 2 SLADTVRMGTEGAYPPYNFINDAG-----EVDGFERELGDELCKRAGLTCEWVKN------------DWDSIIPNLVSGN 64 (232)
T ss_dssp ----CEEEEECSEETTTEEECTTS-----CEESHHHHHHHHHHHHHTCCEEEEEC------------CGGGHHHHHHTTS
T ss_pred CCCCEEEEEECCCCCCeeEECCCC-----CEeeehHHHHHHHHHHcCCceEEEEC------------CHHHHHHHHHCCC
Confidence 34568999887 799999998766 69999999999999999999999865 6899999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
+|++++++..+.+|.+.++||.||+. ....+++++..
T Consensus 65 ~D~~~~~~~~t~~r~~~~~fs~p~~~-~~~~~~~~~~~------------------------------------------ 101 (232)
T 3i6v_A 65 YDTIIAGMSITDERDEVIDFTQNYIP-PTASSYVATSD------------------------------------------ 101 (232)
T ss_dssp CSEECSSCBCCHHHHTTSEEEEEEEC-CCEEEEEESST------------------------------------------
T ss_pred CCEEEeCCcCCHHHHhhcCccccccc-CCeEEEEECCC------------------------------------------
Confidence 99999999999999999999999999 89999997651
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
++||
T Consensus 102 ---------------------------------------------------------------------------~~dL- 105 (232)
T 3i6v_A 102 ---------------------------------------------------------------------------GADL- 105 (232)
T ss_dssp ---------------------------------------------------------------------------TCCT-
T ss_pred ---------------------------------------------------------------------------hHHh-
Confidence 2344
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEA 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~ 320 (444)
.+ ++|+..++....+++... .+ .....+.+++
T Consensus 106 --~g-~igv~~g~~~~~~l~~~~------------------------~~---------------------~~~~~~~~~~ 137 (232)
T 3i6v_A 106 --SG-IVAAQTATIQAGYIAESG------------------------AT---------------------LVEFATPEET 137 (232)
T ss_dssp --TS-EEEEETTSHHHHHHHHSS------------------------SE---------------------EEEESSHHHH
T ss_pred --CC-CEEEecCchHHHHHHhcC------------------------Ce---------------------EEEeCCHHHH
Confidence 23 788899888887776521 11 1124589999
Q ss_pred HHHHHhcCCCCCceEEEecccchhhhhcCC-CccEEeCC-cccccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCCC
Q psy12229 321 VQRVRDSKSSSEGFGYLGDATDIRYLVMTN-CDLQMVGD-EFSRKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGVD 397 (444)
Q Consensus 321 ~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~-c~l~~~~~-~~~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~ 397 (444)
+++|.+|+ .+|++.+...+.|+.++. .++.++.. .+...+++++++|+++ +.+.||++|.+|.++|.++++
T Consensus 138 ~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i-- 211 (232)
T 3i6v_A 138 IAAVRNGE----ADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTM-- 211 (232)
T ss_dssp HHHHHTTS----SSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHH--
T ss_pred HHHHHcCC----cCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCChHHHH--
Confidence 99999997 999999999998888765 67877775 4566788999999986 999999999999999999999
Q ss_pred CCcccccccccCC
Q psy12229 398 GTSVCSSIFDTDG 410 (444)
Q Consensus 398 ~~~~~~~kw~~~~ 410 (444)
.+||++..
T Consensus 212 -----~~k~~~~~ 219 (232)
T 3i6v_A 212 -----IKKWFGED 219 (232)
T ss_dssp -----HHHHHCTT
T ss_pred -----HHHHcCCC
Confidence 99999975
No 13
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.86 E-value=2.2e-21 Score=179.94 Aligned_cols=218 Identities=14% Similarity=0.208 Sum_probs=183.4
Q ss_pred eeeEEEecc-CCCeEEE-ecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 5 TNISDSRLK-QEPFVMR-EESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 5 ~~l~V~~~~-~~Pf~~~-~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
++|+|++.. +|||.+. +.++ +..|+++|+++++++++|++++++.. +|..++.++.+|++|
T Consensus 3 ~~l~v~~~~~~~P~~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D 65 (237)
T 3kzg_A 3 LNLTIGTSKFNPPFEVWSGNNS-----SLYGFDIDLMQEICRRLHATCTFEAY------------IFDDLFPALKNREVD 65 (237)
T ss_dssp CEEEEEEESEETTTEECCCTTS-----CCBSHHHHHHHHHHHHTTCEEEEEEE------------CGGGHHHHHHTTSSS
T ss_pred ceEEEEECCCCCCeEEEeCCCC-----CEeeehHHHHHHHHHHhCCceEEEEc------------CHHHHHHHHhCCCCC
Confidence 578997775 9999999 6555 68999999999999999999999865 589999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
++++++..+.+|.+.++||.||+. ...++++++..
T Consensus 66 ~~~~~~~~~~~r~~~~~fs~p~~~-~~~~~~~~~~~-------------------------------------------- 100 (237)
T 3kzg_A 66 LVIASMIITDERKKHFIFSLPYME-SNSQYITTVDS-------------------------------------------- 100 (237)
T ss_dssp EECSSCBCCTTGGGTCEECCCSBC-CEEEEEEETTC--------------------------------------------
T ss_pred EEEEccccChhHhccceeeeeeee-cceEEEEECCC--------------------------------------------
Confidence 999999999999999999999999 99999998651
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
+|++++||.+
T Consensus 101 ---------------------------------------------------------------------~~~~~~dL~g- 110 (237)
T 3kzg_A 101 ---------------------------------------------------------------------KISTFDDLHG- 110 (237)
T ss_dssp ---------------------------------------------------------------------SCCSGGGGTT-
T ss_pred ---------------------------------------------------------------------CCCCHHHhCC-
Confidence 3789999976
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.++|+..++....++..... . . +.....+.+++++
T Consensus 111 --~~i~~~~g~~~~~~~~~~~~---------------~-------~---------------------~~~~~~~~~~~~~ 145 (237)
T 3kzg_A 111 --KKIGVRKGTPYARQVLSENR---------------N-------N---------------------QVIFYELIQDMLL 145 (237)
T ss_dssp --CEEEEETTSTHHHHHHHTCS---------------S-------C---------------------EEEEESSHHHHHH
T ss_pred --CEEEEecCCHHHHHHHHhCC---------------C-------C---------------------cEEEeCCHHHHHH
Confidence 47898888886666553210 0 0 1112458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCCC--------ccEEeCCcc-cccceEEEecCCCc-hhhhhHHHHHHHhcCCcc
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTNC--------DLQMVGDEF-SRKPYAIAVQQDRD-ARELFCNVHANILSIPFP 392 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~c--------~l~~~~~~~-~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i 392 (444)
+|.+|+ .+|++.+...+.|..++.. ++.++...+ ...+++++++|+++ +.+.||++|.+|.++|.+
T Consensus 146 ~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~ 221 (237)
T 3kzg_A 146 GLSNNQ----VDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTY 221 (237)
T ss_dssp HHHTTS----SSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHH
T ss_pred HHHcCC----CCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcH
Confidence 999997 9999999999999988755 788888777 78889999999975 999999999999999999
Q ss_pred ccCCCCCcccccccccCC
Q psy12229 393 FIGVDGTSVCSSIFDTDG 410 (444)
Q Consensus 393 ~~~~~~~~~~~~kw~~~~ 410 (444)
+++ .+||+...
T Consensus 222 ~~i-------~~k~~~~~ 232 (237)
T 3kzg_A 222 LRL-------YSEYFEGH 232 (237)
T ss_dssp HHH-------HHHHC---
T ss_pred HHH-------HHHHhCcc
Confidence 999 99999864
No 14
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.86 E-value=3.1e-21 Score=180.43 Aligned_cols=219 Identities=21% Similarity=0.339 Sum_probs=187.2
Q ss_pred eeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
-+.|+|++. ++|||.+. .++ +..|+++|+++.+++++|++++++.. +|..++.++.+|++|
T Consensus 23 ~~~l~v~~~~~~~P~~~~-~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D 84 (249)
T 4f3p_A 23 AKELVVGTDTSFMPFEFK-QGD-----KYVGFDLDLWAEIAKGAGWTYKIQPM------------DFAGLIPALQTQNID 84 (249)
T ss_dssp -CCEEEEEESCBTTTBEE-ETT-----EEESHHHHHHHHHHHHHTCCEEEEEE------------CGGGHHHHHHTTSCS
T ss_pred CceEEEEeCCCCCCeEEe-cCC-----eEEEEhHHHHHHHHHHcCCceEEEec------------CHHHHHHHHHCCCCC
Confidence 467999887 89999998 555 69999999999999999999999975 588999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
++++++..+.+|.+.+.||.||+. ...++++++.
T Consensus 85 ~~~~~~~~~~~r~~~~~~s~p~~~-~~~~~~~~~~--------------------------------------------- 118 (249)
T 4f3p_A 85 VALSGMTIKEERRKAIDFSDPYYD-SGLAAMVQAN--------------------------------------------- 118 (249)
T ss_dssp EEEEEEECCHHHHTTEEECSCCEE-EEEEEEEETT---------------------------------------------
T ss_pred EEEeccccCHHHHcCcceecceee-ccEEEEEECC---------------------------------------------
Confidence 999999999999999999999999 8999999765
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
.+.|++++||.+
T Consensus 119 -------------------------------------------------------------------~~~i~~~~dL~g- 130 (249)
T 4f3p_A 119 -------------------------------------------------------------------NTTIKSIDDLNG- 130 (249)
T ss_dssp -------------------------------------------------------------------CCSCCSSGGGTT-
T ss_pred -------------------------------------------------------------------CCCcCChHHhCC-
Confidence 235889999966
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.++++..++....++.+... ..++ ....+.+++++
T Consensus 131 --~~i~v~~g~~~~~~l~~~~~----------------------~~~~---------------------~~~~~~~~~~~ 165 (249)
T 4f3p_A 131 --KVIAAKTGTATIDWIKAHLK----------------------PKEI---------------------RQFPNIDQAYL 165 (249)
T ss_dssp --SEEEEETTSHHHHHHHHHCC----------------------CSEE---------------------EEESSHHHHHH
T ss_pred --CEEEEeCCChHHHHHHhcCC----------------------CceE---------------------EEcCCHHHHHH
Confidence 47898999888877764310 0111 12458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCCC--ccEEeCCcccccceEEEecCCCchhhhhHHHHHHHhcCCccccCCCCCc
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTNC--DLQMVGDEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGVDGTS 400 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~c--~l~~~~~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~~~~ 400 (444)
+|.+|+ .+|++.+...+.|..++.. ++.++...+...+++++++|++|+.+.||++|.++.++|.++++
T Consensus 166 ~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i----- 236 (249)
T 4f3p_A 166 ALEAGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKI----- 236 (249)
T ss_dssp HHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHHHHHHHTHHHHH-----
T ss_pred HHHcCC----eeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHHHHHhCCcHHHH-----
Confidence 999997 9999999999999888654 58888887888889999999999999999999999999999999
Q ss_pred ccccccccCC
Q psy12229 401 VCSSIFDTDG 410 (444)
Q Consensus 401 ~~~~kw~~~~ 410 (444)
.+||++..
T Consensus 237 --~~k~~~~~ 244 (249)
T 4f3p_A 237 --YKKWFGSE 244 (249)
T ss_dssp --HHHHHSSC
T ss_pred --HHHHcCCC
Confidence 99999975
No 15
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.86 E-value=3.1e-21 Score=182.47 Aligned_cols=235 Identities=18% Similarity=0.195 Sum_probs=192.2
Q ss_pred eeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
.+.|+|++. ++|||.+.+.++ +..|+++|+++.+++++|++++++.. +|..++.++.+|++|
T Consensus 20 ~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D 82 (268)
T 3hv1_A 20 EKKIKIGFDATFVPMGYEEKDG-----SYIGFDIDLANAVFKLYGIDVEWQAI------------DWDMKETELKNGTID 82 (268)
T ss_dssp HTEEEEEECTEETTTEEECTTS-----CEECHHHHHHHHHHHTTTCEEEEEEC------------CGGGHHHHHHHTSCS
T ss_pred CCcEEEEECCCCCCceEECCCC-----CEEEehHHHHHHHHHHhCCcEEEEEC------------CHHHHHHHHHCCCCC
Confidence 357999776 789999998666 69999999999999999999999865 589999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
++++++..+.+|.+.+.||.||+. ...++++++.
T Consensus 83 ~~~~~~~~t~~r~~~~~fs~p~~~-~~~~~~~~~~--------------------------------------------- 116 (268)
T 3hv1_A 83 LIWNGYSVTDERKQSADFTEPYMV-NEQVLVTKKS--------------------------------------------- 116 (268)
T ss_dssp EECSSCBCCHHHHTTCEECCCCEE-ECEEEEEEGG---------------------------------------------
T ss_pred EEEecCccCHHHHhcCcCcHHHee-CceEEEEECC---------------------------------------------
Confidence 999899999999999999999999 8999999764
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
. .|++++||.+
T Consensus 117 -------------------------------------------------------------------~-~i~~~~dL~g- 127 (268)
T 3hv1_A 117 -------------------------------------------------------------------S-GIDSVAGMAG- 127 (268)
T ss_dssp -------------------------------------------------------------------G-CCCSSGGGTT-
T ss_pred -------------------------------------------------------------------C-CCCCHHHhCC-
Confidence 2 5788999966
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.++|+..++....++....+.- . ..++. .+.....+.+++++
T Consensus 128 --~~i~v~~g~~~~~~l~~~~~~~------------~-------------------~~~~~-----~~~~~~~~~~~~~~ 169 (268)
T 3hv1_A 128 --KTLGAQAGSSGYDAFNASPKIL------------K-------------------DVVAN-----QKVVQYSTFTQALI 169 (268)
T ss_dssp --CCEEEETTCHHHHHHHHCTTTT------------T-------------------TTSGG-----GCEEEESSHHHHHH
T ss_pred --CEEEEEeCCchHHHHHHhhHHH------------h-------------------hhccc-----ceEEEeCCHHHHHH
Confidence 4799999998888876532100 0 00000 01112458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCC---CccEEeCCcccccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCCCC
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTN---CDLQMVGDEFSRKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~---c~l~~~~~~~~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+|.+|+ .+|++.+...+.|+.++. +++.++...+...+++++++|+++ +.+.||++|.++.++|.++++
T Consensus 170 ~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i--- 242 (268)
T 3hv1_A 170 DLNSGR----IDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKI--- 242 (268)
T ss_dssp HHHHTS----CSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHH---
T ss_pred HHHcCC----CCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHH---
Confidence 999998 999999999988888754 568888887888889999999986 999999999999999999999
Q ss_pred CcccccccccCCCCcccCCCC
Q psy12229 399 TSVCSSIFDTDGKTKVSCPLK 419 (444)
Q Consensus 399 ~~~~~~kw~~~~~~~~~c~~~ 419 (444)
.+||++.......+..+
T Consensus 243 ----~~k~~~~~~~~~~~~~~ 259 (268)
T 3hv1_A 243 ----SNKWFGEDVATDQVKGK 259 (268)
T ss_dssp ----HHHHHSSCCCCTTTTTC
T ss_pred ----HHHhcCCCCCCCCCCCc
Confidence 99999976444444433
No 16
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.86 E-value=5.4e-21 Score=175.95 Aligned_cols=221 Identities=19% Similarity=0.274 Sum_probs=183.8
Q ss_pred ceeeeEEEeccCCCeEEE--ecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccc
Q psy12229 3 TITNISDSRLKQEPFVMR--EESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80 (444)
Q Consensus 3 ~~~~l~V~~~~~~Pf~~~--~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~ 80 (444)
...+|+|++..+|||.+. +.++ ++.|+++|+++.+++++|++++++..+ +|..++.++.+|+
T Consensus 2 ~~~~l~v~~~~~~P~~~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~-----------~~~~~~~~l~~g~ 65 (233)
T 1ii5_A 2 SAMALKVGVVGNPPFVFYGEGKNA-----AFTGISLDVWRAVAESQKWNSEYVRQN-----------SISAGITAVAEGE 65 (233)
T ss_dssp CSCCEEEEECCCTTTCEEC----------CEESHHHHHHHHHHHHHTCCEEEEECS-----------CHHHHHHHHHTTS
T ss_pred CCceEEEEecCCCCeEEEecCCCC-----CEEEEeHHHHHHHHHHcCCcEEEEEeC-----------CHHHHHHHHHCCC
Confidence 346799999999999998 5555 699999999999999999999999653 6899999999999
Q ss_pred ccEEeeccccccccc--ccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCC
Q psy12229 81 ADIALGSLSVMAERE--NVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNP 158 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~--~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~ 158 (444)
+|++++++..+.+|. ..+.|+.|++. ...++++++..
T Consensus 66 ~D~~~~~~~~~~~r~~~~~~~~s~p~~~-~~~~~~~~~~~---------------------------------------- 104 (233)
T 1ii5_A 66 LDILIGPISVTPERAAIEGITFTQPYFS-SGIGLLIPGTA---------------------------------------- 104 (233)
T ss_dssp CSEEEEEEECCHHHHTSTTEEECCCCEE-EEEEEEEEGGG----------------------------------------
T ss_pred cCEEEeeeecCccccccceeEEccceee-cCeEEEEECCC----------------------------------------
Confidence 999998888899998 99999999999 89999997652
Q ss_pred CCCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHH
Q psy12229 159 PGDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDD 238 (444)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~d 238 (444)
..+|++++|
T Consensus 105 -----------------------------------------------------------------------~~~i~~~~d 113 (233)
T 1ii5_A 105 -----------------------------------------------------------------------TPLFRSVGD 113 (233)
T ss_dssp -----------------------------------------------------------------------TTTCSSGGG
T ss_pred -----------------------------------------------------------------------CCCCCCHHH
Confidence 126789999
Q ss_pred hhhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHH
Q psy12229 239 LSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLE 318 (444)
Q Consensus 239 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 318 (444)
|.+ .++++..++....+++... .+ .....+..
T Consensus 114 L~g---~~v~~~~g~~~~~~l~~~~------------------------~~---------------------~~~~~~~~ 145 (233)
T 1ii5_A 114 LKN---KEVAVVRDTTAVDWANFYQ------------------------AD---------------------VRETNNLT 145 (233)
T ss_dssp GTT---CEEEEETTSHHHHHHHHTT------------------------CE---------------------EEEESSHH
T ss_pred hCC---CeEEEECCccHHHHHHHcC------------------------CC---------------------eEEcCCHH
Confidence 976 4788888888887776421 00 11245899
Q ss_pred HHHHHHHhcCCCCCceEEEecccchhhhhcCCC--ccEEeCCcccccceEEEecCCCchhhhhHHHHHHHhcCCccccCC
Q psy12229 319 EAVQRVRDSKSSSEGFGYLGDATDIRYLVMTNC--DLQMVGDEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGV 396 (444)
Q Consensus 319 e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c--~l~~~~~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~ 396 (444)
+++++|.+|+ .+|++.+...+.|+.++.. ++.+++..+...+++++++|++++.+.+|++|.+|.++|.++++
T Consensus 146 ~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i- 220 (233)
T 1ii5_A 146 AAITLLQKKQ----VEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEF- 220 (233)
T ss_dssp HHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTTHHHHH-
T ss_pred HHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHHHHHHHHHHhCCcHHHH-
Confidence 9999999997 8999999988888877554 68888777777888999999999999999999999999999999
Q ss_pred CCCcccccccccCC
Q psy12229 397 DGTSVCSSIFDTDG 410 (444)
Q Consensus 397 ~~~~~~~~kw~~~~ 410 (444)
.+||+...
T Consensus 221 ------~~k~~~~~ 228 (233)
T 1ii5_A 221 ------TERWLGPG 228 (233)
T ss_dssp ------HHHHHC--
T ss_pred ------HHHHcCCC
Confidence 99999864
No 17
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.85 E-value=7.4e-21 Score=176.61 Aligned_cols=218 Identities=17% Similarity=0.195 Sum_probs=184.7
Q ss_pred ceeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccc
Q psy12229 3 TITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRA 81 (444)
Q Consensus 3 ~~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~ 81 (444)
..++|+|++. ++|||.+.+.++ ++.|+++|+++.+++++|++++++.. +|..++.++.+|++
T Consensus 9 ~~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~ 71 (242)
T 3del_B 9 NSEKFIVGTNATYPPFEFVDKRG-----EVVGFDIDLAREISNKLGKTLDVREF------------SFDALILNLKQHRI 71 (242)
T ss_dssp --CEEEEEECSCBTTTBEECTTS-----CEESHHHHHHHHHHHHHTCEEEEEEC------------CGGGHHHHHHTTSS
T ss_pred cCCcEEEEeCCCCCCeeEECCCC-----CEEEeeHHHHHHHHHHcCCceEEEEc------------CHHHHHHHHhCCCc
Confidence 3467999776 799999997766 69999999999999999999999865 68999999999999
Q ss_pred cEEeecccccccccccccccccce--ecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCC
Q psy12229 82 DIALGSLSVMAERENVVDFTVPYY--DLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPP 159 (444)
Q Consensus 82 Di~~~~~~~t~~r~~~~dfS~p~~--~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~ 159 (444)
|++++++..+.+|.+.++| .||+ . ...++++++.
T Consensus 72 D~~~~~~~~~~~r~~~~~~-~p~~~~~-~~~~~~~~~~------------------------------------------ 107 (242)
T 3del_B 72 DAVITGMSITPSRLKEILM-IPYYGEE-IKHLVLVFKG------------------------------------------ 107 (242)
T ss_dssp SEECSSBBCCHHHHTTEEE-EEEEEEE-ESEEEEEEES------------------------------------------
T ss_pred CEEEecCcCCHHHHhcccc-eeeeecC-CceEEEEeCC------------------------------------------
Confidence 9998899999999999999 9999 8 8888888754
Q ss_pred CCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHh
Q psy12229 160 GDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDL 239 (444)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL 239 (444)
.+|++++||
T Consensus 108 -----------------------------------------------------------------------~~i~~~~dL 116 (242)
T 3del_B 108 -----------------------------------------------------------------------ENKHPLPLT 116 (242)
T ss_dssp -----------------------------------------------------------------------CCSCCCCGG
T ss_pred -----------------------------------------------------------------------CCCCCHHHh
Confidence 256788888
Q ss_pred hhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHH
Q psy12229 240 SKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEE 319 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e 319 (444)
.++ ++|+..++....++....+ .++ ....+.++
T Consensus 117 ~g~---~i~v~~g~~~~~~l~~~~~-----------------------~~~---------------------~~~~~~~~ 149 (242)
T 3del_B 117 QYR---SVAVQTGTYQEAYLQSLSE-----------------------VHI---------------------RSFDSTLE 149 (242)
T ss_dssp GSS---CEEEETTSHHHHHHHHSTT-----------------------CCE---------------------EEESSHHH
T ss_pred CCC---EEEEEcCcHHHHHHHhCCC-----------------------ceE---------------------EEECCHHH
Confidence 653 6888898888877764211 111 12458999
Q ss_pred HHHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCcccccc----eEEEecCCCc-hhhhhHHHHHHHhcCCcccc
Q psy12229 320 AVQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFSRKP----YAIAVQQDRD-ARELFCNVHANILSIPFPFI 394 (444)
Q Consensus 320 ~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~~~~----~~~~~~k~sp-~~~~in~~il~l~e~G~i~~ 394 (444)
++++|.+|+ .+|++.+...+.|+.++...+.++...+...+ ++++++|+++ +.+.||++|.+|.++|.+++
T Consensus 150 ~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~ 225 (242)
T 3del_B 150 VLMEVMHGK----SPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAE 225 (242)
T ss_dssp HHHHHHTTS----SSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHcCC----CCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999997 99999999999999987777888877777777 8999999987 99999999999999999999
Q ss_pred CCCCCcccccccccCC
Q psy12229 395 GVDGTSVCSSIFDTDG 410 (444)
Q Consensus 395 ~~~~~~~~~~kw~~~~ 410 (444)
+ .+||+...
T Consensus 226 i-------~~k~~~~~ 234 (242)
T 3del_B 226 L-------EQKWGLNN 234 (242)
T ss_dssp H-------HHHTTGGG
T ss_pred H-------HHHHCCCC
Confidence 9 99999864
No 18
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.85 E-value=3.9e-21 Score=178.16 Aligned_cols=221 Identities=16% Similarity=0.234 Sum_probs=183.7
Q ss_pred eeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
.+.|+|++. ++|||.+.+.++ +..|+++|+++++++++|++++++.. +|..++.++.+|++|
T Consensus 14 ~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D 76 (239)
T 3kbr_A 14 SGVLRVATTGDYKPFSYRTEEG-----GYAGFDVDMAQRLAESLGAKLVVVPT------------SWPNLMRDFADDRFD 76 (239)
T ss_dssp HTEEEEEECSEETTTEEECTTS-----CEESHHHHHHHHHHHHTTCEEEEEEC------------CTTTHHHHHHTTCCS
T ss_pred CCeEEEEECCCCCCeeEECCCC-----CEEeehHHHHHHHHHHHCCceEEEEe------------CHHHHHHHHHCCCcC
Confidence 357899775 699999998766 69999999999999999999999865 689999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
++++++..+.+|.+.++||.||+. ....+++++.+
T Consensus 77 ~~~~~~~~t~~r~~~~~fs~p~~~-~~~~~~~~~~~-------------------------------------------- 111 (239)
T 3kbr_A 77 IAMSGISINLERQRQAYFSIPYLR-DGKTPITLCSE-------------------------------------------- 111 (239)
T ss_dssp EECSSCBCCHHHHTTCEECSCSEE-ECEEEEEEGGG--------------------------------------------
T ss_pred EEEeCCcCCHHHcCccccchHHhc-cCcEEEEECCc--------------------------------------------
Confidence 998999999999999999999999 99999997652
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
...|++++||.+
T Consensus 112 -------------------------------------------------------------------~~~i~~~~dL~~- 123 (239)
T 3kbr_A 112 -------------------------------------------------------------------EARFQTLEQIDQ- 123 (239)
T ss_dssp -------------------------------------------------------------------GGGGSSHHHHSS-
T ss_pred -------------------------------------------------------------------ccccCCHHHhcC-
Confidence 235789999973
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.+.++|+..++....+++.... ..++ ....+..++++
T Consensus 124 ~g~~v~~~~g~~~~~~l~~~~~----------------------~~~~---------------------~~~~~~~~~~~ 160 (239)
T 3kbr_A 124 PGVTAIVNPGGTNEKFARANLK----------------------KARI---------------------LVHPDNVTIFQ 160 (239)
T ss_dssp TTCEEEECTTSHHHHHHHHHCS----------------------SSEE---------------------EECCCTTTHHH
T ss_pred CCcEEEEcCCCcHHHHHHHhCC----------------------CCce---------------------EEeCCHHHHHH
Confidence 2468999999888877764210 0111 12458889999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCCCccEEeC--CcccccceEEEecCCCchhhhhHHHHHHHhcCCccccCCCCCc
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVG--DEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGVDGTS 400 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~--~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~~~~ 400 (444)
+|.+|+ .+|++.+...+.|..++...+.++. ..+...+++++++|+..+.+.||++|.+|.++|.++++
T Consensus 161 ~l~~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~l~~~g~~~~i----- 231 (239)
T 3kbr_A 161 QIVDGK----ADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQR----- 231 (239)
T ss_dssp HHHTTS----CSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECSCHHHHHHHHHHHHHHHHHTHHHHH-----
T ss_pred HHHcCC----cCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcCCHHHHHHHHHHHHHHHHCCcHHHH-----
Confidence 999997 8999999999999988766666665 44677888999999556999999999999999999999
Q ss_pred cccccccc
Q psy12229 401 VCSSIFDT 408 (444)
Q Consensus 401 ~~~~kw~~ 408 (444)
.+||++
T Consensus 232 --~~k~~~ 237 (239)
T 3kbr_A 232 --MEHWLE 237 (239)
T ss_dssp --HHHHC-
T ss_pred --HHHHhc
Confidence 999986
No 19
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.83 E-value=3.4e-20 Score=172.17 Aligned_cols=225 Identities=17% Similarity=0.216 Sum_probs=184.6
Q ss_pred ceeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcC-CeEEEEEcCCCCCccccCCCccchhHHHHhccc
Q psy12229 3 TITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVG-FEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80 (444)
Q Consensus 3 ~~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~ln-ft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~ 80 (444)
..++|+|++. ++|||.+. .++ +..|+++|+++++++++| ++++++.. +|..++.++.+|+
T Consensus 6 ~~~~l~v~~~~~~~P~~~~-~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~------------~~~~~~~~l~~g~ 67 (246)
T 4eq9_A 6 SKKEIIVATNGSPRPFIYE-ENG-----ELTGYEIEVVRAIFKDSDKYDVKFEKT------------EWSGVFAGLDADR 67 (246)
T ss_dssp -CEEEEEEECCCSTTTSEE-ETT-----EEESHHHHHHHHHHTTCSSEEEEEEEC------------CHHHHHHHHHTTS
T ss_pred CCCEEEEEeCCCcCCeEEc-CCC-----CCcccHHHHHHHHHHHcCCceEEEEeC------------CHHHHHHHHhCCC
Confidence 3578999887 89999994 555 799999999999999999 99999865 6899999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
+|++++++..+.+|...+.||.||+. ...++++++.
T Consensus 68 ~D~~~~~~~~~~~r~~~~~~s~p~~~-~~~~~~~~~~------------------------------------------- 103 (246)
T 4eq9_A 68 YNMAVNNLSYTKERAEKYLYAAPIAQ-NPNVLVVKKD------------------------------------------- 103 (246)
T ss_dssp CSEECSSCCCCHHHHHHEEECCCCEE-CCEEEEEETT-------------------------------------------
T ss_pred cCEEecccccChhhhhceeeccceec-CceEEEEECC-------------------------------------------
Confidence 99999999999999999999999999 9999999874
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
..+|++++||.
T Consensus 104 ---------------------------------------------------------------------~~~i~~~~dL~ 114 (246)
T 4eq9_A 104 ---------------------------------------------------------------------DSSIKSLDDIG 114 (246)
T ss_dssp ---------------------------------------------------------------------CCSCSSGGGCT
T ss_pred ---------------------------------------------------------------------CCCCCCHHHhC
Confidence 23578899997
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcC-CCCCHHH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAK-LPNSLEE 319 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~-~~~~~~e 319 (444)
+ .++|+..++....++...... .+. ..+ ... ...+.++
T Consensus 115 g---~~i~~~~g~~~~~~l~~~~~~------------~~~-------~~~-------------------~~~~~~~~~~~ 153 (246)
T 4eq9_A 115 G---KSTEVVQATTSAKQLEAYNAE------------HTD-------NPT-------------------ILNYTKADFQQ 153 (246)
T ss_dssp T---CEEEECTTCHHHHHHHHHHHH------------CTT-------SCC-------------------EEEECCCCHHH
T ss_pred C---CEEEEecCccHHHHHHHHHhh------------CCC-------cce-------------------EEEecCCCHHH
Confidence 6 478999998888777653210 000 000 000 1248999
Q ss_pred HHHHHHhcCCCCCceEEEecccchhhhhcCCC--ccEEeCCcccccc-eEEEecCCCc-hhhhhHHHHHHHhcCCccccC
Q psy12229 320 AVQRVRDSKSSSEGFGYLGDATDIRYLVMTNC--DLQMVGDEFSRKP-YAIAVQQDRD-ARELFCNVHANILSIPFPFIG 395 (444)
Q Consensus 320 ~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c--~l~~~~~~~~~~~-~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~ 395 (444)
++++|.+|+ .+|++.+...+.|+.++.. ++.++.......+ ++++++|++| +.+.||++|.++.++|.++++
T Consensus 154 ~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i 229 (246)
T 4eq9_A 154 IMVRLSDGQ----FDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKL 229 (246)
T ss_dssp HHHHHHTTS----SSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHcCC----ceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHH
Confidence 999999998 9999999999988887543 6888877666655 7899999986 999999999999999999999
Q ss_pred CCCCcccccccccCC
Q psy12229 396 VDGTSVCSSIFDTDG 410 (444)
Q Consensus 396 ~~~~~~~~~kw~~~~ 410 (444)
.+||++..
T Consensus 230 -------~~k~~~~~ 237 (246)
T 4eq9_A 230 -------SKQFFGDT 237 (246)
T ss_dssp -------HHHHHSSC
T ss_pred -------HHHhcCCC
Confidence 99999864
No 20
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.83 E-value=3.6e-20 Score=169.52 Aligned_cols=217 Identities=19% Similarity=0.237 Sum_probs=177.1
Q ss_pred eeeEEEecc-CCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccE
Q psy12229 5 TNISDSRLK-QEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADI 83 (444)
Q Consensus 5 ~~l~V~~~~-~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di 83 (444)
.+|+|++.. +|||.+.+.++ +..|+++|+++++++++|++++++.. +|..++.++.+|++|+
T Consensus 2 ~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D~ 64 (227)
T 3tql_A 2 DTIKFATEATYPPYVYMGPSG-----QVEGFGADIVKAVCKQMQAVCTISNQ------------PWDSLIPSLKLGKFDA 64 (227)
T ss_dssp CEEEEEECSCBTTTBEEC--C-----CEESHHHHHHHHHHHHTTCEEEEEEC------------CHHHHHHHHHHTSCSE
T ss_pred ceEEEEEcCCCCCeeEECCCC-----CcccchHHHHHHHHHHhCCeEEEEeC------------CHHHHHHHHhCCCCCE
Confidence 478998874 99999998766 69999999999999999999999865 6899999999999999
Q ss_pred EeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCCC
Q psy12229 84 ALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDIL 163 (444)
Q Consensus 84 ~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (444)
+++++..+.+|...+.||.|++. ...++++++..
T Consensus 65 ~~~~~~~~~~r~~~~~~s~p~~~-~~~~l~~~~~~--------------------------------------------- 98 (227)
T 3tql_A 65 LFGGMNITTARQKEVDFTDPYYT-NSVSFIADKNT--------------------------------------------- 98 (227)
T ss_dssp ECSSCBCCTTGGGTEEECSCSBC-CEEEEEEETTS---------------------------------------------
T ss_pred EEecCcCCHhHHhheecccceec-cceEEEEeCCC---------------------------------------------
Confidence 98899999999999999999999 89999998762
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhCC
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQY 243 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~~ 243 (444)
+.+++++||.+
T Consensus 99 -------------------------------------------------------------------~~~~~~~dL~g-- 109 (227)
T 3tql_A 99 -------------------------------------------------------------------PLTLSKQGLKG-- 109 (227)
T ss_dssp -------------------------------------------------------------------CCCCSTTTTTT--
T ss_pred -------------------------------------------------------------------CCCCCHHHhCC--
Confidence 22367888865
Q ss_pred ceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHHH
Q psy12229 244 KIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQR 323 (444)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~ 323 (444)
.++|+..++....++.+... ... +.....+.++++++
T Consensus 110 -~~v~~~~g~~~~~~l~~~~~-----------------------~~~-------------------~~~~~~~~~~~~~~ 146 (227)
T 3tql_A 110 -KIIGVQGGTTFDSYLQDSFG-----------------------NSI-------------------TIQRYPSEEDALMD 146 (227)
T ss_dssp -CEEEEETTSHHHHHHHHHHG-----------------------GGS-------------------EEEEESSHHHHHHH
T ss_pred -CEEEEEecccHHHHHHHhcc-----------------------ccc-------------------eEEEcCCHHHHHHH
Confidence 47999999888887765321 000 11124589999999
Q ss_pred HHhcCCCCCceEEEecccchhhhhcCCC--ccEEeCCcccc-----cceEEEecCCCc-hhhhhHHHHHHHhcCCccccC
Q psy12229 324 VRDSKSSSEGFGYLGDATDIRYLVMTNC--DLQMVGDEFSR-----KPYAIAVQQDRD-ARELFCNVHANILSIPFPFIG 395 (444)
Q Consensus 324 v~~~~~~~~~~a~i~d~~~~~y~~~~~c--~l~~~~~~~~~-----~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~ 395 (444)
|.+|+ .+|++.+...+.+..++.. ++.++...+.. .+++++++|++| +.+.||++|.++.++|.++++
T Consensus 147 l~~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i 222 (227)
T 3tql_A 147 LTSGR----VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLKLNKALAAIKANGVYAAI 222 (227)
T ss_dssp HTTTS----SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHcCC----cCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHH
Confidence 99997 9999999989888887554 37766544333 345899999987 999999999999999999999
Q ss_pred CCCCcccccccc
Q psy12229 396 VDGTSVCSSIFD 407 (444)
Q Consensus 396 ~~~~~~~~~kw~ 407 (444)
.+|||
T Consensus 223 -------~~k~~ 227 (227)
T 3tql_A 223 -------VQKYF 227 (227)
T ss_dssp -------HHHHC
T ss_pred -------HHhhC
Confidence 99996
No 21
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.83 E-value=6.5e-20 Score=167.70 Aligned_cols=220 Identities=20% Similarity=0.333 Sum_probs=182.0
Q ss_pred eeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
.++|+|++. ++|||.+.+. + +..|+++|+++.+++++|++++++.. +|..++.++.+|++|
T Consensus 2 ~~~l~v~~~~~~~P~~~~~~-g-----~~~G~~~dl~~~~~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D 63 (226)
T 1wdn_A 2 DKKLVVATDTAFVPFEFKQG-D-----LYVGFDVDLWAAIAKELKLDYELKPM------------DFSGIIPALQTKNVD 63 (226)
T ss_dssp --CEEEEEESSBTTTBEEET-T-----EEESHHHHHHHHHHHHHTCCEEEEEE------------CGGGHHHHHHTTSSS
T ss_pred CceEEEEECCCCCCeeEecC-C-----cEEEeeHHHHHHHHHHhCCEEEEEEC------------CHHHHHHHHhCCCCC
Confidence 357999877 8999999874 4 79999999999999999999999864 688999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
++++++..+.+|.+.+.|+.|++. ...++++++.
T Consensus 64 ~~~~~~~~~~~r~~~~~~~~p~~~-~~~~~~~~~~--------------------------------------------- 97 (226)
T 1wdn_A 64 LALAGITITDERKKAIDFSDGYYK-SGLLVMVKAN--------------------------------------------- 97 (226)
T ss_dssp EEEEEEECCHHHHTTSEECSCCEE-EEEEEEEETT---------------------------------------------
T ss_pred EEEEcCcCCHHHhCccccccchhc-CceEEEEeCC---------------------------------------------
Confidence 999888889999999999999999 8999999875
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
.+.|++++||.+
T Consensus 98 -------------------------------------------------------------------~~~i~~~~dL~g- 109 (226)
T 1wdn_A 98 -------------------------------------------------------------------NNDVKSVKDLDG- 109 (226)
T ss_dssp -------------------------------------------------------------------CCSCSSSTTTTT-
T ss_pred -------------------------------------------------------------------CCCCCCHHHhCC-
Confidence 225788889965
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.++++..++....+++... + ..+ .....+..++++
T Consensus 110 --~~i~~~~g~~~~~~l~~~~---------------~-------~~~---------------------~~~~~~~~~~~~ 144 (226)
T 1wdn_A 110 --KVVAVKSGTGSVDYAKANI---------------K-------TKD---------------------LRQFPNIDNAYM 144 (226)
T ss_dssp --CEEEEETTSHHHHHHHHHC---------------C-------CSE---------------------EEEESSHHHHHH
T ss_pred --CEEEEEcCCcHHHHHHHhC---------------C-------Cce---------------------EEEeCCHHHHHH
Confidence 4788888888877766420 0 000 112458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCC--CccEEeCCcccccceEEEecCCC-chhhhhHHHHHHHhcCCccccCCCCC
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTN--CDLQMVGDEFSRKPYAIAVQQDR-DARELFCNVHANILSIPFPFIGVDGT 399 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~--c~l~~~~~~~~~~~~~~~~~k~s-p~~~~in~~il~l~e~G~i~~~~~~~ 399 (444)
+|.+|+ .+|++.+...+.+..++. .++.+++......+++++++|++ .+.+.+|++|.++.++|.++++
T Consensus 145 ~l~~g~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g~~~~i---- 216 (226)
T 1wdn_A 145 ELGTNR----ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEI---- 216 (226)
T ss_dssp HHHTTS----CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHH----
T ss_pred HHHcCC----cCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHH----
Confidence 999997 899999988888887755 36777776666778899999998 5999999999999999999999
Q ss_pred cccccccccCCC
Q psy12229 400 SVCSSIFDTDGK 411 (444)
Q Consensus 400 ~~~~~kw~~~~~ 411 (444)
.+||+...|
T Consensus 217 ---~~k~~~~~p 225 (226)
T 1wdn_A 217 ---YKKWFGTEP 225 (226)
T ss_dssp ---HHHHHSSCC
T ss_pred ---HHHHcCCCC
Confidence 999998654
No 22
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.83 E-value=3.8e-20 Score=169.48 Aligned_cols=221 Identities=20% Similarity=0.303 Sum_probs=180.1
Q ss_pred eeeeEEEeccCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccE
Q psy12229 4 ITNISDSRLKQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADI 83 (444)
Q Consensus 4 ~~~l~V~~~~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di 83 (444)
.++|+|++.++|||.+. .++ +..|+++|+++.+++++|++++++..+ +|..++.++.+|++|+
T Consensus 2 ~~~l~v~~~~~~P~~~~-~~g-----~~~G~~~dl~~~~~~~~g~~~~~~~~~-----------~~~~~~~~l~~g~~D~ 64 (228)
T 2pyy_A 2 QQPLLVATRVIPPFVLS-NKG-----ELSGFSIDLWRSIATQIGIESKLIEYS-----------SVPELISAIKDNKVNL 64 (228)
T ss_dssp --CEEEEECCBTTTBBC-C--------CBSHHHHHHHHHHHHHTCCEEEEECS-----------SHHHHHHHHHTTSCSE
T ss_pred CceEEEEecCCCCeEEe-cCC-----ceEEEeHHHHHHHHHHhCCcEEEEEcC-----------CHHHHHHHHHCCCcCE
Confidence 35799999999999988 555 699999999999999999999999764 6789999999999999
Q ss_pred EeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCCC
Q psy12229 84 ALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDIL 163 (444)
Q Consensus 84 ~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (444)
+++++..+.+|.+.+.|+.|++. ...++++++..+
T Consensus 65 ~~~~~~~~~~r~~~~~~~~p~~~-~~~~~~~~~~~~-------------------------------------------- 99 (228)
T 2pyy_A 65 GIAAISITAEREQNFDFSLPIFA-SGLQIMVRNLES-------------------------------------------- 99 (228)
T ss_dssp ECSSCBCCHHHHHHSEECSCSEE-EEEEEEEEC-----------------------------------------------
T ss_pred EEeccccCHHHHccceecccchh-cceEEEEECCcc--------------------------------------------
Confidence 99888889999999999999999 899999987621
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhCC
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQY 243 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~~ 243 (444)
...+|++++||.+
T Consensus 100 -----------------------------------------------------------------~~~~~~~~~dL~g-- 112 (228)
T 2pyy_A 100 -----------------------------------------------------------------GTGDIRSIDDLPG-- 112 (228)
T ss_dssp -------------------------------------------------------------------CCCCSGGGCTT--
T ss_pred -----------------------------------------------------------------ccCCcCCHHHcCC--
Confidence 0246889999966
Q ss_pred ceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHHH
Q psy12229 244 KIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQR 323 (444)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~ 323 (444)
.++++..++....++++.. + +.....+..+++++
T Consensus 113 -~~i~~~~g~~~~~~l~~~~--------------------------~-------------------~~~~~~~~~~~~~~ 146 (228)
T 2pyy_A 113 -KVVATTAGSTAATYLREHH--------------------------I-------------------SVLEVPKIEEAYKA 146 (228)
T ss_dssp -CEEEEETTSHHHHHHHHTT--------------------------C-------------------EEEEESSHHHHHHH
T ss_pred -CeEEEEcCcHHHHHHHHcC--------------------------C-------------------ceEecCCHHHHHHH
Confidence 4788888888777765421 0 01124589999999
Q ss_pred HHhcCCCCCceEEEecccchhhhhcCC--CccEEeCCcccccceEEEecCCCchhhhhHHHHHHHhcCCccccCCCCCcc
Q psy12229 324 VRDSKSSSEGFGYLGDATDIRYLVMTN--CDLQMVGDEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGVDGTSV 401 (444)
Q Consensus 324 v~~~~~~~~~~a~i~d~~~~~y~~~~~--c~l~~~~~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~~~~~ 401 (444)
|.+|+ .+|++.+...+.+..++. +++.+++..+...+++++++|++++.+.+|++|.++.++|.++++
T Consensus 147 l~~g~----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~g~~~~i------ 216 (228)
T 2pyy_A 147 LQTKK----ADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSL------ 216 (228)
T ss_dssp HHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHHHHHHTTHHHHH------
T ss_pred HHcCC----CCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHHHHHhCCcHHHH------
Confidence 99997 889999988888887754 367777766667788999999999999999999999999999999
Q ss_pred cccccccCC
Q psy12229 402 CSSIFDTDG 410 (444)
Q Consensus 402 ~~~kw~~~~ 410 (444)
.+||+...
T Consensus 217 -~~k~~~~~ 224 (228)
T 2pyy_A 217 -YDKWFDPK 224 (228)
T ss_dssp -HHHHHCC-
T ss_pred -HHHHcCCc
Confidence 99999864
No 23
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.82 E-value=1.4e-19 Score=166.13 Aligned_cols=215 Identities=20% Similarity=0.271 Sum_probs=179.8
Q ss_pred eeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccE
Q psy12229 5 TNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADI 83 (444)
Q Consensus 5 ~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di 83 (444)
++|+|++. ++|||.+.+.++ +..|+++|+++.+++++|++++++.. +|..++.++.+|++|+
T Consensus 6 ~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D~ 68 (229)
T 2y7i_A 6 RTLHFGTSATYAPYEFVDADN-----KIVGFDIDVANAVCKEMQAECSFTNQ------------SFDSLIPSLRFKKFDA 68 (229)
T ss_dssp CEEEEEECCCBTTTBEECTTS-----CEESHHHHHHHHHHHHTTCEEEEEEC------------CGGGHHHHHHTTSCSE
T ss_pred CcEEEEeCCCcCCceEECCCC-----CCcceeHHHHHHHHHHhCCeEEEEEc------------CHHHHHHHHhCCCceE
Confidence 57899876 899999987665 69999999999999999999999864 6889999999999999
Q ss_pred Eeecccccccccccccccccceecc-cEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 84 ALGSLSVMAERENVVDFTVPYYDLV-GITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 84 ~~~~~~~t~~r~~~~dfS~p~~~~~-~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
+++++..+.+|.+.+.|+.|++. . ..++++++.
T Consensus 69 ~~~~~~~~~~r~~~~~~s~p~~~-~~~~~~~~~~~--------------------------------------------- 102 (229)
T 2y7i_A 69 VIAGMDMTPKREQQVSFSQPYYE-GLSAVVVTRKG--------------------------------------------- 102 (229)
T ss_dssp ECSSCBCCHHHHTTSEECSCSBC-CCCEEEEEETT---------------------------------------------
T ss_pred EEecCccCHHHhcceeecccccc-CCcEEEEEeCC---------------------------------------------
Confidence 98888889999999999999999 8 899999764
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
. +++++||.+
T Consensus 103 -------------------------------------------------------------------~--~~~~~dL~g- 112 (229)
T 2y7i_A 103 -------------------------------------------------------------------A--YHTFADLKG- 112 (229)
T ss_dssp -------------------------------------------------------------------S--CCSTGGGTT-
T ss_pred -------------------------------------------------------------------C--CCCHHHHCC-
Confidence 2 678899965
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.++|+..++....++++... ..+ .....+..++++
T Consensus 113 --~~v~~~~g~~~~~~l~~~~~----------------------~~~---------------------~~~~~~~~~~~~ 147 (229)
T 2y7i_A 113 --KKVGLENGTTHQRYLQDKQQ----------------------AIT---------------------PVAYDSYLNAFT 147 (229)
T ss_dssp --CEEEEETTSHHHHHHHHHCT----------------------TSE---------------------EEEESCHHHHHH
T ss_pred --CEEEEecCCcHHHHHHHhCC----------------------CCe---------------------EEecCCHHHHHH
Confidence 47888888888777764210 001 112458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCccc-----ccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCC
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFS-----RKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGV 396 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~-----~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~ 396 (444)
+|.+|+ .+|++.+...+.+..++..++.++...+. ..+++++++|++| +.+.||++|.++.++|.++++
T Consensus 148 ~l~~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i- 222 (229)
T 2y7i_A 148 DLKNNR----LEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQM- 222 (229)
T ss_dssp HHHTTS----CSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHH-
T ss_pred HHHcCC----cCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHH-
Confidence 999997 89999999999988887667887775543 2477899999987 999999999999999999999
Q ss_pred CCCccccccccc
Q psy12229 397 DGTSVCSSIFDT 408 (444)
Q Consensus 397 ~~~~~~~~kw~~ 408 (444)
.+||++
T Consensus 223 ------~~k~~~ 228 (229)
T 2y7i_A 223 ------QEKWFT 228 (229)
T ss_dssp ------HHHHHC
T ss_pred ------HHHHcC
Confidence 999986
No 24
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.82 E-value=2.3e-19 Score=166.02 Aligned_cols=222 Identities=14% Similarity=0.163 Sum_probs=178.1
Q ss_pred eeeeEEEe-ccCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSR-LKQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~-~~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
.++|+|++ .++|||.+.+.++ +..|+++|+++++++++|++++++.. +|..++.++.+|++|
T Consensus 3 ~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D 65 (239)
T 1lst_A 3 PQTVRIGTDTTYAPFSSKDAKG-----EFIGFDIDLGNEMCKRMQVKCTWVAS------------DFDALIPSLKAKKID 65 (239)
T ss_dssp CSEEEEEECSCBTTTBEECTTC-----CEESHHHHHHHHHHHHHTCEEEEEEC------------CGGGHHHHHHTTSCS
T ss_pred cceEEEEECCCcCCeeEECCCC-----CEeeEHHHHHHHHHHHHCCeEEEEeC------------CHHHHHHHHhCCCCC
Confidence 35799987 6799999997666 69999999999999999999999864 689999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
++++++..+.+|.+.+.||.||+. ...++++++..
T Consensus 66 ~~~~~~~~t~~r~~~~~~s~p~~~-~~~~l~~~~~~-------------------------------------------- 100 (239)
T 1lst_A 66 AIISSLSITDKRQQEIAFSDKLYA-ADSRLIAAKGS-------------------------------------------- 100 (239)
T ss_dssp EECSSCBCCHHHHHHCEECSCSBC-CCEEEEEETTC--------------------------------------------
T ss_pred EEEECcCcCHHHhhceeeccccee-CceEEEEeCCC--------------------------------------------
Confidence 999889999999999999999999 99999998752
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
+...+++||.+
T Consensus 101 --------------------------------------------------------------------~~~~~~~dL~g- 111 (239)
T 1lst_A 101 --------------------------------------------------------------------PIQPTLESLKG- 111 (239)
T ss_dssp --------------------------------------------------------------------CCCSSHHHHTT-
T ss_pred --------------------------------------------------------------------CCCCCHHHhCC-
Confidence 11158899966
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.++++..++....+++.... ..++. .....+.+++++
T Consensus 112 --~~v~~~~g~~~~~~l~~~~~----------------------~~~~~-------------------~~~~~~~~~~~~ 148 (239)
T 1lst_A 112 --KHVGVLQGSTQEAYANDNWR----------------------TKGVD-------------------VVAYANQDLIYS 148 (239)
T ss_dssp --CEEEEETTSHHHHHHHHHTG----------------------GGTCE-------------------EEEESSHHHHHH
T ss_pred --CEEEEEcCccHHHHHHHhcc----------------------cCCCe-------------------EEEcCCHHHHHH
Confidence 37888898888877764310 00010 112458999999
Q ss_pred HHHhcCCCCCceEEEecccchhh-hhcC--CCccEEeCCcccc-----cceEEEecCCCc-hhhhhHHHHHHHhcCCccc
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRY-LVMT--NCDLQMVGDEFSR-----KPYAIAVQQDRD-ARELFCNVHANILSIPFPF 393 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y-~~~~--~c~l~~~~~~~~~-----~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~ 393 (444)
+|.+|+ .+|++.+...+.+ +..+ ..++.+++..+.. .+++++++|+++ +.+.+|++|.++.++|.++
T Consensus 149 ~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~ 224 (239)
T 1lst_A 149 DLTAGR----LDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYD 224 (239)
T ss_dssp HHHTTS----CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHcCC----CCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHH
Confidence 999997 8899999877653 3332 2357777655543 267899999987 9999999999999999999
Q ss_pred cCCCCCcccccccccCC
Q psy12229 394 IGVDGTSVCSSIFDTDG 410 (444)
Q Consensus 394 ~~~~~~~~~~~kw~~~~ 410 (444)
++ .+||++..
T Consensus 225 ~i-------~~k~~~~~ 234 (239)
T 1lst_A 225 KM-------AKKYFDFN 234 (239)
T ss_dssp HH-------HHTTCSSC
T ss_pred HH-------HHHHcCCC
Confidence 99 99999853
No 25
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.82 E-value=1.1e-19 Score=167.25 Aligned_cols=220 Identities=18% Similarity=0.196 Sum_probs=184.5
Q ss_pred ceeeeEEEe-ccCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccc
Q psy12229 3 TITNISDSR-LKQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRA 81 (444)
Q Consensus 3 ~~~~l~V~~-~~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~ 81 (444)
..+.|+|++ .++|||.+.+.++ +..|+++|+++++++++|.+++++.. +|..++.++.+|++
T Consensus 9 ~~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~ 71 (234)
T 3h7m_A 9 RHRTIVVGGDRDYPPYEFIDQNG-----KPAGYNVELTRAIAEVMGMTVEFRLG------------AWSEMFSALKSGRV 71 (234)
T ss_dssp SSSCEEEEEETEETTTEEECTTS-----CEESHHHHHHHHHHHHHTCCEEEEEE------------CGGGHHHHHHTTSS
T ss_pred CCCEEEEEecCCCCCeEEECCCC-----CEeeeEHHHHHHHHHHcCCceEEEeC------------CHHHHHHHHhCCCe
Confidence 346799976 4899999997766 69999999999999999999999855 68999999999999
Q ss_pred cEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCC
Q psy12229 82 DIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGD 161 (444)
Q Consensus 82 Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~ 161 (444)
|++ .++..+.+|.+.+.||.|++. ...++++++.
T Consensus 72 D~~-~~~~~~~~r~~~~~~s~p~~~-~~~~~~~~~~-------------------------------------------- 105 (234)
T 3h7m_A 72 DVL-QGISWSEKRARQIDFTPPHTI-VYHAIFARRD-------------------------------------------- 105 (234)
T ss_dssp SEE-EEEECCHHHHTTEEEEEEEEE-EEEEEEEESS--------------------------------------------
T ss_pred eEE-EeccCCHhHHhhcCCCccccc-cceEEEEECC--------------------------------------------
Confidence 994 678889999999999999999 8999999875
Q ss_pred CCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhh
Q psy12229 162 ILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSK 241 (444)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~ 241 (444)
.+.|++++||.+
T Consensus 106 --------------------------------------------------------------------~~~~~~~~dL~g 117 (234)
T 3h7m_A 106 --------------------------------------------------------------------SPPAAGLEDLRG 117 (234)
T ss_dssp --------------------------------------------------------------------SCCCSSGGGGTT
T ss_pred --------------------------------------------------------------------CCCCCCHHHhCC
Confidence 225789999966
Q ss_pred CCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHH
Q psy12229 242 QYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAV 321 (444)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~ 321 (444)
+ ++++..++....++.+... ..+ .....+..+++
T Consensus 118 ~---~i~~~~g~~~~~~l~~~~~----------------------~~~---------------------~~~~~~~~~~~ 151 (234)
T 3h7m_A 118 R---KVALHRDGIMHEYLAERGY----------------------GKD---------------------LVLTPTPADAL 151 (234)
T ss_dssp S---CEEEETTSHHHHHHHTTTC----------------------GGG---------------------EEEESSHHHHH
T ss_pred C---EEEEEeCchHHHHHHhcCC----------------------Cce---------------------EEEeCCHHHHH
Confidence 4 7888999888877765320 001 11245899999
Q ss_pred HHHHhcCCCCCceEEEecccchhhhhcCC--CccEEeCCcccccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCCCC
Q psy12229 322 QRVRDSKSSSEGFGYLGDATDIRYLVMTN--CDLQMVGDEFSRKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 322 ~~v~~~~~~~~~~a~i~d~~~~~y~~~~~--c~l~~~~~~~~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
++|.+|+ .+|++.+...+.|+.++. .++.++...+...+++++++|+++ +.+.||++|.+|.++|.++++
T Consensus 152 ~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i--- 224 (234)
T 3h7m_A 152 RLLAAGG----CDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAI--- 224 (234)
T ss_dssp HHHHTTS----SSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTHHHHH---
T ss_pred HHHHcCC----ceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHHHHHHHHcCcHHHH---
Confidence 9999998 899999988888887743 367777777778889999999986 999999999999999999999
Q ss_pred CcccccccccCC
Q psy12229 399 TSVCSSIFDTDG 410 (444)
Q Consensus 399 ~~~~~~kw~~~~ 410 (444)
.+||++..
T Consensus 225 ----~~k~~~~~ 232 (234)
T 3h7m_A 225 ----RAKWLGVL 232 (234)
T ss_dssp ----HHHSTTCC
T ss_pred ----HHHhcccc
Confidence 99999863
No 26
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.82 E-value=9.6e-20 Score=172.52 Aligned_cols=218 Identities=19% Similarity=0.230 Sum_probs=180.9
Q ss_pred eeeeEEEecc-CCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSRLK-QEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~~~-~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
.+.|+|++.. +|||.+.+.++ ++.|+++|+++++++++|++++++..+ +|..++.++.+|++|
T Consensus 31 ~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~lg~~~~~~~~~-----------~~~~~~~~l~~G~~D 94 (267)
T 3mpk_A 31 HPVVKVAVLNLFAPFTLFRTDE-----QFGGISAAVLQLLQLRTGLDFEIIGVD-----------TVEELIAKLRSGEAD 94 (267)
T ss_dssp CSEEEEEEETEETTTEECCTTC-----CCBSHHHHHHHHHHHHHCCEEEEEEES-----------SHHHHHHHHHHTSCS
T ss_pred CCcEEEEeCCCCCCeEEECCCC-----cEeeeHHHHHHHHHHHHCCeEEEEecC-----------CHHHHHHHHHCCCcc
Confidence 4679997766 89999987766 699999999999999999999999654 799999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
+++ ++..+.+|.+.+.||.||+. ...++++++.
T Consensus 95 ~~~-~~~~t~~r~~~~~fs~p~~~-~~~~l~~~~~--------------------------------------------- 127 (267)
T 3mpk_A 95 MAG-ALFVNSARESFLSFSRPYVR-NGMVIVTRQD--------------------------------------------- 127 (267)
T ss_dssp EEE-EEECCGGGTTTEEECSCSEE-ECEEEEEESS---------------------------------------------
T ss_pred EEe-cccCChhhhcceEechhhcc-CceEEEEECC---------------------------------------------
Confidence 965 78889999999999999999 9999999875
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
...|++++||.+
T Consensus 128 -------------------------------------------------------------------~~~i~~~~dL~g- 139 (267)
T 3mpk_A 128 -------------------------------------------------------------------PDAPVDADHLDG- 139 (267)
T ss_dssp -------------------------------------------------------------------TTSCSSGGGCTT-
T ss_pred -------------------------------------------------------------------CCCCCCHHHHCC-
Confidence 335788999976
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.++|+..++....++++... ..++ ....+.+++++
T Consensus 140 --~~i~v~~g~~~~~~l~~~~~----------------------~~~~---------------------~~~~~~~~~l~ 174 (267)
T 3mpk_A 140 --RTVALVRNSAAIPLLQRRYP----------------------QAKV---------------------VTADNPSEAML 174 (267)
T ss_dssp --CEEEEETTCTHHHHHHHHCT----------------------TSEE---------------------EEESSHHHHHH
T ss_pred --CEEEEeCCchhHHHHHHhCC----------------------CcEE---------------------EEeCCHHHHHH
Confidence 48999999888887764210 0111 12458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcC--CCccEEeCCcc-cccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCCCC
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMT--NCDLQMVGDEF-SRKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~--~c~l~~~~~~~-~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+|.+|+ .+|++.+...+.|+.++ ..++.++.... ...+++++++|++| +.+.||++|.+|.++| ++++
T Consensus 175 ~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i--- 246 (267)
T 3mpk_A 175 MVANGQ----ADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISNDE-LASI--- 246 (267)
T ss_dssp HHHHTS----CSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSCHHH-HHHH---
T ss_pred HHHcCC----CCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHhCCHHH-HHHH---
Confidence 999997 89999999899888875 44677776533 46788999999997 9999999999999997 9999
Q ss_pred CcccccccccC
Q psy12229 399 TSVCSSIFDTD 409 (444)
Q Consensus 399 ~~~~~~kw~~~ 409 (444)
.+||++.
T Consensus 247 ----~~kw~~~ 253 (267)
T 3mpk_A 247 ----ISRWRGS 253 (267)
T ss_dssp ----HHTTC--
T ss_pred ----HHhhccC
Confidence 9999986
No 27
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.82 E-value=1.8e-19 Score=169.82 Aligned_cols=225 Identities=14% Similarity=0.151 Sum_probs=183.3
Q ss_pred eeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccE
Q psy12229 5 TNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADI 83 (444)
Q Consensus 5 ~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di 83 (444)
+.|+|.+. ++|||.+.+.++ ++.|+++|+++.+++++|++++++.. +|..++.++.+|++|+
T Consensus 29 ~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D~ 91 (259)
T 4dz1_A 29 RTLNVAVSPASPPMLFKSADG-----KLQGIDLELFSSYCQSRHCKLNITEY------------AWDGMLGAVASGQADV 91 (259)
T ss_dssp CEEEEEECCCBTTTBEECTTC-----CEESHHHHHHHHHHHHHTCEEEEEEC------------CHHHHHHHHHHTSSSE
T ss_pred CeEEEEECCCCCCeEEECCCC-----CEEEeHHHHHHHHHHHhCCeEEEEEc------------CHHHHHHHHhCCCCCE
Confidence 57999776 689999998666 69999999999999999999999865 6899999999999999
Q ss_pred EeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCCC
Q psy12229 84 ALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDIL 163 (444)
Q Consensus 84 ~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (444)
+++++..+.+|.+.++||.||+. ....+++++.+
T Consensus 92 ~~~~~~~t~~r~~~~~fs~p~~~-~~~~~~~~~~~--------------------------------------------- 125 (259)
T 4dz1_A 92 AFSGISITDKRKKVIDFSEPYYI-NSFYLVSMANH--------------------------------------------- 125 (259)
T ss_dssp EEEEEECCHHHHTTEEECCCSEE-EEEEEEEETTS---------------------------------------------
T ss_pred EEECCcCCHHHhhccccccchhh-CceEEEEEcCC---------------------------------------------
Confidence 99999999999999999999999 89999997652
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhCC
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQY 243 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~~ 243 (444)
..+|++++||.++
T Consensus 126 ------------------------------------------------------------------~~~i~~~~dL~g~- 138 (259)
T 4dz1_A 126 ------------------------------------------------------------------KITLNNLNELNKY- 138 (259)
T ss_dssp ------------------------------------------------------------------CCCCCSGGGGGGS-
T ss_pred ------------------------------------------------------------------CCCCCCHHHhCCC-
Confidence 3468899999774
Q ss_pred ceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHHH
Q psy12229 244 KIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQR 323 (444)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~ 323 (444)
++|+..++....+++..... -+++. .. +.....+.++++++
T Consensus 139 --~v~v~~g~~~~~~l~~~~~~----------~g~~~------~~---------------------~~~~~~~~~~~~~~ 179 (259)
T 4dz1_A 139 --SIGYPRGMAYSDLIKNDLEP----------KGYYS------LS---------------------KVKLYPTYNETMAD 179 (259)
T ss_dssp --CEEEETTSTHHHHHHHHTGG----------GTSCC------GG---------------------GCEEESSHHHHHHH
T ss_pred --EEEEeCCcHHHHHHHHhccc----------ccccc------cc---------------------eeEecCCHHHHHHH
Confidence 78889998888877653210 00000 00 11124589999999
Q ss_pred HHhcCCCCCceEEEecccchhhhhcC-CCccEEeCCcccccceEEEecCCCchhhhhHHHHHHHhcCCccccCCCCCccc
Q psy12229 324 VRDSKSSSEGFGYLGDATDIRYLVMT-NCDLQMVGDEFSRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGVDGTSVC 402 (444)
Q Consensus 324 v~~~~~~~~~~a~i~d~~~~~y~~~~-~c~l~~~~~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~~~~~~ 402 (444)
|.+|+ .+|++.+...+.++.++ ..++..........+++++++|++++.+.||++|.+ ...|.++++
T Consensus 180 l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~------- 247 (259)
T 4dz1_A 180 LKNGN----LDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGI------- 247 (259)
T ss_dssp HHHTS----CSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHH-------
T ss_pred HHcCC----CCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHHHHHHHHHHh-CCCeehHHH-------
Confidence 99998 99999998888776653 446666665566778899999999999999999999 999999999
Q ss_pred ccccccCC
Q psy12229 403 SSIFDTDG 410 (444)
Q Consensus 403 ~~kw~~~~ 410 (444)
.++|.+..
T Consensus 248 ~~~~~~~~ 255 (259)
T 4dz1_A 248 VDSWMKHH 255 (259)
T ss_dssp HHHHTCC-
T ss_pred HHHHHhhc
Confidence 99998763
No 28
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.81 E-value=3.6e-19 Score=166.87 Aligned_cols=222 Identities=15% Similarity=0.113 Sum_probs=179.3
Q ss_pred eeeeEEEeccCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCe-EEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSRLKQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFE-YEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~~~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft-~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
...|+|++.++|||.+.+.++ +..|+++|+++++++++|++ ++++.. +|..++.++.+|++|
T Consensus 12 ~~~l~v~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~------------~~~~~~~~l~~g~~D 74 (257)
T 2q88_A 12 QGFARIAIANEPPFTAVGADG-----KVSGAAPDVAREIFKRLGVADVVASIS------------EYGAMIPGLQAGRHD 74 (257)
T ss_dssp HTEEEEEECCCTTTCEECTTC-----CEESHHHHHHHHHHHHTTCCEEEEEEC------------CGGGHHHHHHTTSCS
T ss_pred CCeEEEEcCCCCCeeEECCCC-----CcccccHHHHHHHHHHcCCCeeeEEeC------------CHHHHHHHHHCCCcC
Confidence 467999888999999987665 69999999999999999998 998865 589999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
++++++..+.+|.+.+.||.||+. ....+++++..
T Consensus 75 ~~~~~~~~t~~r~~~~~~s~p~~~-~~~~~~~~~~~-------------------------------------------- 109 (257)
T 2q88_A 75 AITAGLFMKPERCAAVAYSQPILC-DAEAFALKKGN-------------------------------------------- 109 (257)
T ss_dssp EECSCCBCCHHHHTTSEECSCCCE-ECEEEEEETTC--------------------------------------------
T ss_pred EEEecccCCHHHHhccccccchhc-CceEEEEECCC--------------------------------------------
Confidence 998889999999999999999999 89999998762
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
...|++++||.++
T Consensus 110 -------------------------------------------------------------------~~~i~~~~dL~~~ 122 (257)
T 2q88_A 110 -------------------------------------------------------------------PLGLKSYKDIADN 122 (257)
T ss_dssp -------------------------------------------------------------------TTCCCBHHHHHHC
T ss_pred -------------------------------------------------------------------ccCCCCHHHHhcc
Confidence 2257899999843
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.+.++|+..++....++++... + ..+ .....+.+++++
T Consensus 123 ~g~~i~~~~g~~~~~~l~~~~~--------------~-------~~~---------------------~~~~~~~~~~~~ 160 (257)
T 2q88_A 123 PDAKIGAPGGGTEEKLALEAGV--------------P-------RDR---------------------VIVVPDGQSGLK 160 (257)
T ss_dssp TTCCEEECTTSHHHHHHHHTTC--------------C-------GGG---------------------EEECSSHHHHHH
T ss_pred CCceEEEECCcccHHHHHhcCC--------------C-------Cce---------------------EEEcCCHHHHHH
Confidence 2357899999888877764310 0 001 112458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCCC--ccEEeCCccc---ccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCC
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTNC--DLQMVGDEFS---RKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGV 396 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~c--~l~~~~~~~~---~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~ 396 (444)
+|.+|+ .+|++.+...+.++.++.. .+..+.. +. ..+++++++|+++ +.+.||++|.++.++|.++++
T Consensus 161 ~l~~gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i- 234 (257)
T 2q88_A 161 MLQDGR----IDVYSLPVLSINDLVSKANDPNVEVLAP-VEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKI- 234 (257)
T ss_dssp HHHHTS----CSEEEEEHHHHHHHHHHHCCTTEEEECS-CBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHH-
T ss_pred HHHcCC----CcEEEcCHHHHHHHHHhCCCcceeeecc-cCCccccceEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHH-
Confidence 999998 8999999988888877433 3444443 22 3456789999875 999999999999999999999
Q ss_pred CCCccccccccc
Q psy12229 397 DGTSVCSSIFDT 408 (444)
Q Consensus 397 ~~~~~~~~kw~~ 408 (444)
.+||..
T Consensus 235 ------~~k~~~ 240 (257)
T 2q88_A 235 ------IEPYGF 240 (257)
T ss_dssp ------HGGGTC
T ss_pred ------HHHhCC
Confidence 999943
No 29
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.80 E-value=1.8e-19 Score=170.98 Aligned_cols=216 Identities=16% Similarity=0.185 Sum_probs=176.5
Q ss_pred eeeeEEEec-cCCCeEEEecC---CCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcc
Q psy12229 4 ITNISDSRL-KQEPFVMREES---EGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEK 79 (444)
Q Consensus 4 ~~~l~V~~~-~~~Pf~~~~~~---~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g 79 (444)
.++|+|++. ++|||.+...+ + +..|+++|+++++++++|++++++.. +|..++.++.+|
T Consensus 20 ~~~l~v~~~~~~pP~~~~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~v~~~~~------------~~~~~~~~l~~G 82 (271)
T 2iee_A 20 KGKIVVATSGTLYPTSYHDTDSGSD-----KLTGYEVEVVREAAKRLGLKVEFKEM------------GIDGMLTAVNSG 82 (271)
T ss_dssp HTEEEEEECSCBTTTBEEETTTTCC-----EEECHHHHHHHHHHHHTTCEEEEEEC------------CSTTHHHHHHHT
T ss_pred CCeEEEEECCCCCCeeEeCCCCCCC-----CceeeHHHHHHHHHHHcCCeEEEEEC------------CHHHHHHHHHCC
Confidence 357999887 89999998765 4 79999999999999999999999865 688999999999
Q ss_pred cccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCC
Q psy12229 80 RADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPP 159 (444)
Q Consensus 80 ~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~ 159 (444)
++|++++++..+.+|.+.+.||.||+. ....+++++..
T Consensus 83 ~~D~~~~~~~~t~~r~~~~~fs~p~~~-~~~~l~~~~~~----------------------------------------- 120 (271)
T 2iee_A 83 QVDAAANDIDVTKDREEKFAFSTPYKY-SYGTAIVRKDD----------------------------------------- 120 (271)
T ss_dssp SSSEECSSCBCCHHHHTTEEECCCSEE-EEEEEEECTTT-----------------------------------------
T ss_pred CcCEEEeCCcCChhhccceEEeeccee-CCeEEEEECCC-----------------------------------------
Confidence 999999888899999999999999999 89999997652
Q ss_pred CCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHh
Q psy12229 160 GDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDL 239 (444)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL 239 (444)
...|++++||
T Consensus 121 ----------------------------------------------------------------------~~~i~~~~dL 130 (271)
T 2iee_A 121 ----------------------------------------------------------------------LSGIKTLKDL 130 (271)
T ss_dssp ----------------------------------------------------------------------GGGCSSGGGG
T ss_pred ----------------------------------------------------------------------CCCCCCHHHh
Confidence 1257889999
Q ss_pred hhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHH
Q psy12229 240 SKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEE 319 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e 319 (444)
.+ .++|+..++....+++... .++ ....+..+
T Consensus 131 ~g---~~i~v~~g~~~~~~l~~~~------------------------~~~---------------------~~~~~~~~ 162 (271)
T 2iee_A 131 KG---KKAAGAATTVYMEVARKYG------------------------AKE---------------------VIYDNATN 162 (271)
T ss_dssp TT---CEEESCTTSHHHHHHHHTT------------------------CEE---------------------EECSSCCH
T ss_pred CC---CEEEEeCCccHHHHHHHcC------------------------Cce---------------------EEeCChhh
Confidence 65 4799888888877775321 011 12346677
Q ss_pred H--HHHHHhcCCCCCceEEEecccchhhhhc-CC--CccEEe-CCcccccceEEEecCCCc-hhhhhHHHHHHHhcCCcc
Q psy12229 320 A--VQRVRDSKSSSEGFGYLGDATDIRYLVM-TN--CDLQMV-GDEFSRKPYAIAVQQDRD-ARELFCNVHANILSIPFP 392 (444)
Q Consensus 320 ~--~~~v~~~~~~~~~~a~i~d~~~~~y~~~-~~--c~l~~~-~~~~~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i 392 (444)
+ +++|.+|+ .+ ++.+...+.+... +. .++.++ ...+...+++++++|++| +.+.||++|.+|.++|.+
T Consensus 163 ~~l~~~L~~Gr----vD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~ 237 (271)
T 2iee_A 163 EQYLKDVANGR----TD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSL 237 (271)
T ss_dssp HHHHHHHHHTS----SC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCC----cc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHHCCCH
Confidence 7 99999997 77 6666666554443 32 367777 666777788999999986 999999999999999999
Q ss_pred ccCCCCCccccccccc
Q psy12229 393 FIGVDGTSVCSSIFDT 408 (444)
Q Consensus 393 ~~~~~~~~~~~~kw~~ 408 (444)
+++ .+||+.
T Consensus 238 ~~i-------~~k~~~ 246 (271)
T 2iee_A 238 TKL-------SKQFFN 246 (271)
T ss_dssp HHH-------HHHHTT
T ss_pred HHH-------HHHhCC
Confidence 999 999998
No 30
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.79 E-value=1.2e-18 Score=163.85 Aligned_cols=218 Identities=17% Similarity=0.168 Sum_probs=184.5
Q ss_pred eeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
...|+|.+. ++|||.+.+.++ +..|+++|+++.+++++|.+++++.. +|..++.++.+|++|
T Consensus 30 ~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~l~~g~~D 92 (268)
T 3qax_A 30 NRIWIVGTNATYPPFEYVDAQG-----EVVGFDIDLAKAISEKLGKQLEVREF------------AFDALILNLKKHRID 92 (268)
T ss_dssp -CEEEEEECSCBTTTBEECTTS-----CEESHHHHHHHHHHHHHTCEEEEEEC------------CGGGHHHHHHHTSSS
T ss_pred CCeEEEEECCCCCCceEECCCC-----CEEEEEHHHHHHHHHHhCCeEEEEec------------CHHHHHHHHhCCCcc
Confidence 357888776 799999997766 69999999999999999999999854 688999999999999
Q ss_pred EEeecccccccccccccccccce--ecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYY--DLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~--~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
++++++..+.+|.+.++| .||+ . ....+++++.
T Consensus 93 ~~~~~~~~~~~r~~~~~~-~p~~~~~-~~~~~~~~~~------------------------------------------- 127 (268)
T 3qax_A 93 AILAGMSITPSRQKEIAL-LPYYGDE-VQELMVVSKR------------------------------------------- 127 (268)
T ss_dssp EECSCCBCCHHHHTTSEE-EEEECCC-BCEEEEEEET-------------------------------------------
T ss_pred EEeecCccCHhHhcceee-ecceecc-cceEEEEECC-------------------------------------------
Confidence 999889999999999999 9999 8 8889999765
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
..+|++++||.
T Consensus 128 ---------------------------------------------------------------------~~~i~~~~dL~ 138 (268)
T 3qax_A 128 ---------------------------------------------------------------------SLETPVLPLTQ 138 (268)
T ss_dssp ---------------------------------------------------------------------TSCSCCCCGGG
T ss_pred ---------------------------------------------------------------------CCCCCCHHHhC
Confidence 24678889997
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEA 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~ 320 (444)
++ ++++..++....++....+ .++ ....+.+++
T Consensus 139 g~---~i~~~~g~~~~~~l~~~~~-----------------------~~~---------------------~~~~~~~~~ 171 (268)
T 3qax_A 139 YS---SVAVQTGTYQEHYLLSQPG-----------------------ICV---------------------RSFDSTLEV 171 (268)
T ss_dssp SS---CEEEETTSHHHHHHHTSTT-----------------------CCE---------------------EEESCHHHH
T ss_pred CC---EEEEecCcHHHHHHHhCCC-----------------------ceE---------------------EecCCHHHH
Confidence 64 7888888888877764211 011 124589999
Q ss_pred HHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCcccccc----eEEEecCCCc-hhhhhHHHHHHHhcCCccccC
Q psy12229 321 VQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFSRKP----YAIAVQQDRD-ARELFCNVHANILSIPFPFIG 395 (444)
Q Consensus 321 ~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~~~~----~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~ 395 (444)
+++|.+|+ .+|++.+...+.+..++...+.++...+...+ ++++++|++| +.+.+|++|.++.++|.++++
T Consensus 172 ~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i 247 (268)
T 3qax_A 172 IMEVRYGK----SPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSL 247 (268)
T ss_dssp HHHHHTTS----SSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHcCC----CCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHH
Confidence 99999997 99999999999999887777888877777777 8999999987 999999999999999999999
Q ss_pred CCCCcccccccccCC
Q psy12229 396 VDGTSVCSSIFDTDG 410 (444)
Q Consensus 396 ~~~~~~~~~kw~~~~ 410 (444)
.+||+...
T Consensus 248 -------~~k~~~~~ 255 (268)
T 3qax_A 248 -------TKKWQLSE 255 (268)
T ss_dssp -------HHHTTCSC
T ss_pred -------HHHHcCCc
Confidence 99999864
No 31
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.78 E-value=1.9e-18 Score=162.50 Aligned_cols=219 Identities=18% Similarity=0.228 Sum_probs=181.0
Q ss_pred eeeEEEec-cCCCeEE---EecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccc
Q psy12229 5 TNISDSRL-KQEPFVM---REESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80 (444)
Q Consensus 5 ~~l~V~~~-~~~Pf~~---~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~ 80 (444)
.+|+|.+. ++|||.+ .+.++ ++.|+++|+++.+++++|.+++++.. +|..++.++.+|+
T Consensus 39 ~~l~v~~~~~~~P~~~~~~~~~~g-----~~~G~~~dl~~~~~~~~g~~~~~~~~------------~~~~~~~~l~~g~ 101 (269)
T 4i62_A 39 GKLVVALNPDFAPFEYQKVVDGKN-----QIVGSDIELAKAIATELGVELELSPM------------SFDNVLASVQSGK 101 (269)
T ss_dssp TEEEEEECSCBTTTBEEEEETTEE-----EEESHHHHHHHHHHHHHTCEEEEEEC------------CHHHHHHHHHTTS
T ss_pred CeEEEEecCCCCCceeecccCCCC-----cEeeecHHHHHHHHHHHCCceEEEEc------------CHHHHHHHHhCCC
Confidence 47899775 7999999 55444 79999999999999999999999864 6889999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
+|++++++..+.+|.+.+.|+.|++. ....+++++..
T Consensus 102 ~D~~~~~~~~~~~r~~~~~~s~p~~~-~~~~~~~~~~~------------------------------------------ 138 (269)
T 4i62_A 102 ADLAISGVSKTDERSKVFDFSTPYYT-AKNKLIVKKSD------------------------------------------ 138 (269)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCCEE-CCEEEEEEGGG------------------------------------------
T ss_pred ccEEecCCcCCHhHhhceecccchhh-cceEEEEECCc------------------------------------------
Confidence 99999899999999999999999999 89999997652
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
..+|++++||.
T Consensus 139 ---------------------------------------------------------------------~~~i~~~~dL~ 149 (269)
T 4i62_A 139 ---------------------------------------------------------------------LATYQSVNDLA 149 (269)
T ss_dssp ---------------------------------------------------------------------TTTCSSGGGGC
T ss_pred ---------------------------------------------------------------------cccccCHHHhC
Confidence 34688999996
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEA 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~ 320 (444)
+ .++++..++....++..... ..++ ....+.+++
T Consensus 150 g---~~i~~~~g~~~~~~l~~~~~----------------------~~~~---------------------~~~~~~~~~ 183 (269)
T 4i62_A 150 Q---KKVGAQKGSIQETMAKDLLQ----------------------NSSL---------------------VSLPKNGNL 183 (269)
T ss_dssp ----CEEEEETTSHHHHHHHHHCT----------------------TSEE---------------------EEESCHHHH
T ss_pred C---CeEEEecCchHHHHHHHhCC----------------------CCcE---------------------EecCCHHHH
Confidence 6 47898998888777764210 0111 124589999
Q ss_pred HHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCccc---ccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCC
Q psy12229 321 VQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFS---RKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGV 396 (444)
Q Consensus 321 ~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~---~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~ 396 (444)
+++|.+|+ .+|++.+...+.+..+++..+......+. ..+++++++|++| +.+.||++|.++.++|.++++
T Consensus 184 ~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i- 258 (269)
T 4i62_A 184 ITDLKSGQ----VDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKL- 258 (269)
T ss_dssp HHHHHTTS----SSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHH-
T ss_pred HHHHHcCC----CCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHH-
Confidence 99999998 99999999888888887666666554333 6678999999986 999999999999999999999
Q ss_pred CCCcccccccccC
Q psy12229 397 DGTSVCSSIFDTD 409 (444)
Q Consensus 397 ~~~~~~~~kw~~~ 409 (444)
.+||++.
T Consensus 259 ------~~k~~~~ 265 (269)
T 4i62_A 259 ------IEDAFKA 265 (269)
T ss_dssp ------HHHHHHH
T ss_pred ------HHHHhCC
Confidence 9999975
No 32
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.77 E-value=5.1e-18 Score=160.81 Aligned_cols=219 Identities=17% Similarity=0.264 Sum_probs=180.3
Q ss_pred eeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccccc
Q psy12229 4 ITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRAD 82 (444)
Q Consensus 4 ~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~D 82 (444)
.++|+|.+. ++|||.+.. ++ +..|+++|+++.+++++|++++++.. .|..++.++.+|++|
T Consensus 41 ~~~l~v~~~~~~~P~~~~~-~g-----~~~G~~~dl~~~i~~~~g~~v~~~~~------------~~~~~~~~l~~G~~D 102 (272)
T 2pvu_A 41 KKKVVVGTDAAFAPFEYMQ-KG-----KIVGFDVDLLDAVMKAAGLDYELKNI------------GWDPLFASLQSKEVD 102 (272)
T ss_dssp CCCEEEEECCCBTTTBEEE-TT-----EEESHHHHHHHHHHHHHTCCEEEEEC------------CHHHHHHHHHHTSSS
T ss_pred CCeEEEEECCCCCCeEEec-CC-----eEEEEHHHHHHHHHHHhCCceEEEEC------------CHHHHHHHHhCCCCC
Confidence 467999776 899999984 44 69999999999999999999999865 588999999999999
Q ss_pred EEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 83 IALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 83 i~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
++++++..+.+|.+.+.|+.|++. ....+++++.
T Consensus 103 ~~~~~~~~~~~r~~~~~~s~p~~~-~~~~l~~~~~--------------------------------------------- 136 (272)
T 2pvu_A 103 MGISGITITDERKQSYDFSDPYFE-ATQVILVKQG--------------------------------------------- 136 (272)
T ss_dssp EECSSCBCCHHHHTTEEECSCCEE-ECEEEEEETT---------------------------------------------
T ss_pred EEEeCCcCCHHHHhcCccchhhhc-cceEEEEECC---------------------------------------------
Confidence 998888888999999999999999 8999999764
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
.+|++++||.++
T Consensus 137 --------------------------------------------------------------------~~i~~~~dL~g~ 148 (272)
T 2pvu_A 137 --------------------------------------------------------------------SPVKNALDLKGK 148 (272)
T ss_dssp --------------------------------------------------------------------CCCCSGGGGTTS
T ss_pred --------------------------------------------------------------------CCCCCHHHhCCC
Confidence 237889999663
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
++++..++....++++... . ..++ ....+..++++
T Consensus 149 ---~i~~~~g~~~~~~l~~~~~--------------~-------~~~i---------------------~~~~~~~~~~~ 183 (272)
T 2pvu_A 149 ---TIGVQNATTGQEAAEKLFG--------------K-------GPHI---------------------KKFETTVVAIM 183 (272)
T ss_dssp ---CEEEETTSHHHHHHHHHHC--------------S-------STTE---------------------EEESSHHHHHH
T ss_pred ---eEEEEcCchHHHHHHHhcC--------------C-------CCeE---------------------EEcCCHHHHHH
Confidence 6888888887777654210 0 0011 12458999999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCCC--ccEEeCCcc--cccceEEEecCCCchhhhhHHHHHHHhcCCccccCCCC
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTNC--DLQMVGDEF--SRKPYAIAVQQDRDARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~c--~l~~~~~~~--~~~~~~~~~~k~sp~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+|.+|+ .+|++.+...+.+..++.. ++.++.... ...+++++++|+..+.+.+|++|.++.++|.++++
T Consensus 184 ~l~~G~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i--- 256 (272)
T 2pvu_A 184 ELLNGG----VDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEI--- 256 (272)
T ss_dssp HHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHH---
T ss_pred HHHcCC----ccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHH---
Confidence 999997 8999999888888877554 477877653 66678899999966999999999999999999999
Q ss_pred CcccccccccCC
Q psy12229 399 TSVCSSIFDTDG 410 (444)
Q Consensus 399 ~~~~~~kw~~~~ 410 (444)
.+||+...
T Consensus 257 ----~~k~~~~~ 264 (272)
T 2pvu_A 257 ----YKKWFGKE 264 (272)
T ss_dssp ----HHHHHSSC
T ss_pred ----HHHHcCCC
Confidence 99999864
No 33
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.77 E-value=4.7e-18 Score=162.48 Aligned_cols=216 Identities=16% Similarity=0.213 Sum_probs=181.1
Q ss_pred eeeEEEecc-CCCeEEEecCCCCCceeeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccE
Q psy12229 5 TNISDSRLK-QEPFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADI 83 (444)
Q Consensus 5 ~~l~V~~~~-~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di 83 (444)
++|+|.+.. +|||.+.+.++ +..|+++|+++.+++++|++++++.. .|..++.+|.+|++|+
T Consensus 57 ~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~G~~v~~~~~------------~~~~~~~~l~~G~~D~ 119 (283)
T 2yln_A 57 GTVTVGTEGTYAPFTYHDKDG-----KLTGYDVEVTRAVAEKLGVKVEFKET------------QWDSMMAGLKAGRFDV 119 (283)
T ss_dssp CEEEEEECSEETTTEEECTTS-----CEESHHHHHHHHHHHHHTCEEEEEEC------------CGGGHHHHHHHTSCSE
T ss_pred CeEEEEECCCCCCeeEECCCC-----CEeeehHHHHHHHHHHcCCceEEEEC------------CHHHHHHHHHCCCcCE
Confidence 579997765 99999997665 69999999999999999999999865 4889999999999999
Q ss_pred Eeecccc-cccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCCCC
Q psy12229 84 ALGSLSV-MAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPGDI 162 (444)
Q Consensus 84 ~~~~~~~-t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (444)
+++++.. +.+|.+.++|+.||+. ....+++++.
T Consensus 120 ~~~~~~~~t~~r~~~~~~~~p~~~-~~~~l~~~~~--------------------------------------------- 153 (283)
T 2yln_A 120 VANQVGLTSPERQATFDKSEPYSW-SGAVLVAHND--------------------------------------------- 153 (283)
T ss_dssp ECSSCCCCSHHHHHHEEECSCSEE-ECEEEEEETT---------------------------------------------
T ss_pred EEecCccCChhhhcceEeccCeee-ecEEEEEECC---------------------------------------------
Confidence 9988887 8999999999999999 8999999865
Q ss_pred CcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhhhC
Q psy12229 163 LPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLSKQ 242 (444)
Q Consensus 163 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~~~ 242 (444)
.+|++++||.+
T Consensus 154 --------------------------------------------------------------------~~i~s~~dL~G- 164 (283)
T 2yln_A 154 --------------------------------------------------------------------SNIKSIADIKG- 164 (283)
T ss_dssp --------------------------------------------------------------------CSCCSGGGCTT-
T ss_pred --------------------------------------------------------------------CCCCCHHHhCC-
Confidence 23788999955
Q ss_pred CceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHHHH
Q psy12229 243 YKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQ 322 (444)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~ 322 (444)
.++++..++....+++... . +.....+..++++
T Consensus 165 --~~v~v~~g~~~~~~l~~~~------------------------~---------------------~~~~~~~~~~~~~ 197 (283)
T 2yln_A 165 --VKTAQSLTSNYGEKAKAAG------------------------A---------------------QLVPVDGLAQSLT 197 (283)
T ss_dssp --SEEEECTTSHHHHHHHHTT------------------------C---------------------EEEECSSHHHHHH
T ss_pred --CEEEEecCchHHHHHHHcC------------------------C---------------------eEEEeCCHHHHHH
Confidence 4788888888777665421 0 1112458899999
Q ss_pred HHHhcCCCCCceEEEecccchhhhhcCCC--ccEEeC-Cccc-ccceEEEecCCCc-hhhhhHHHHHHHhcCCccccCCC
Q psy12229 323 RVRDSKSSSEGFGYLGDATDIRYLVMTNC--DLQMVG-DEFS-RKPYAIAVQQDRD-ARELFCNVHANILSIPFPFIGVD 397 (444)
Q Consensus 323 ~v~~~~~~~~~~a~i~d~~~~~y~~~~~c--~l~~~~-~~~~-~~~~~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~ 397 (444)
+|.+|+ .+|++.+...+.+..++.. ++.++. ..+. ..+++++++|+++ +.+.||++|.++.++|.++++
T Consensus 198 ~l~~g~----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i-- 271 (283)
T 2yln_A 198 LIEQKR----ADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKL-- 271 (283)
T ss_dssp HHHTTS----CCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHH--
T ss_pred HHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHH--
Confidence 999997 8999999888888776443 488887 6677 7788999999986 899999999999999999999
Q ss_pred CCcccccccccCC
Q psy12229 398 GTSVCSSIFDTDG 410 (444)
Q Consensus 398 ~~~~~~~kw~~~~ 410 (444)
.+||++..
T Consensus 272 -----~~k~~~~~ 279 (283)
T 2yln_A 272 -----GEQFFGKD 279 (283)
T ss_dssp -----HHHHHSSC
T ss_pred -----HHHHcCCC
Confidence 99999764
No 34
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.77 E-value=7.9e-18 Score=160.68 Aligned_cols=223 Identities=15% Similarity=0.186 Sum_probs=181.6
Q ss_pred eeeeEEEec-cCCCeEEEecCCCCCceeeeecHHHHHHHHHHH----cC---CeEEEEEcCCCCCccccCCCccchhHHH
Q psy12229 4 ITNISDSRL-KQEPFVMREESEGGGGVKYKGYCIDLIEEIRKL----VG---FEYEIFVAPDNSFGNMDENGQWNGMIKE 75 (444)
Q Consensus 4 ~~~l~V~~~-~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~----ln---ft~~~~~~~~~~~g~~~~ng~~~g~i~~ 75 (444)
.+.|+|++. ++|||.+.+.++ +..|+++|+++.+++. ++ ++++++.. .|..++.+
T Consensus 16 ~~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~------------~~~~~~~~ 78 (287)
T 2vha_A 16 NGVIVVGHRESSVPFSYYDNQQ-----KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI------------TSQNRIPL 78 (287)
T ss_dssp HTEEEEEECSEETTTEEECSSS-----CEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC------------CTTTHHHH
T ss_pred CCeEEEEEcCCCCCceEECCCC-----CcccccHHHHHHHHHHHHHhcCCCCceEEEEEC------------CHHHHHHH
Confidence 357999876 699999997665 6999999999999987 46 88888854 57889999
Q ss_pred HhcccccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccc
Q psy12229 76 LIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQ 155 (444)
Q Consensus 76 l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~ 155 (444)
+.+|++|++++++..+.+|.+.++||.||+. ....+++++.
T Consensus 79 l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~-~~~~l~~~~~-------------------------------------- 119 (287)
T 2vha_A 79 LQNGTFDFECGSTTNNVERQKQAAFSDTIFV-VGTRLLTKKG-------------------------------------- 119 (287)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTCEEEEEEEE-EEEEEEEETT--------------------------------------
T ss_pred HHCCCeeEEeccccCCcchhhcccccceeee-cceEEEEECC--------------------------------------
Confidence 9999999998888889999999999999999 8999999764
Q ss_pred cCCCCCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCC
Q psy12229 156 VNPPGDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIES 235 (444)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~s 235 (444)
.+|++
T Consensus 120 ---------------------------------------------------------------------------~~i~s 124 (287)
T 2vha_A 120 ---------------------------------------------------------------------------GDIKD 124 (287)
T ss_dssp ---------------------------------------------------------------------------SSCCS
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 24788
Q ss_pred hHHhhhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCC
Q psy12229 236 LDDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPN 315 (444)
Q Consensus 236 l~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~ 315 (444)
++||.+ .++++..++....++...... .+ .++ +.....
T Consensus 125 l~dL~g---~~v~~~~g~~~~~~l~~~~~~----------~~----------~~~-------------------~~~~~~ 162 (287)
T 2vha_A 125 FADLKG---KAVVVTSGTTSEVLLNKLNEE----------QK----------MNM-------------------RIISAK 162 (287)
T ss_dssp GGGGTT---CEEEEETTSHHHHHHHHHHHH----------TT----------CCC-------------------EEEEES
T ss_pred HHHcCC---CEEEEeCCCcHHHHHHHHhhc----------cC----------CCc-------------------eEEEcC
Confidence 999966 378888888887777643200 00 000 011245
Q ss_pred CHHHHHHHHHhcCCCCCceEEEecccchhhhhcCC---CccEEeCCcccccceEEEecCCCc-hhhhhHHHHHHHhcCCc
Q psy12229 316 SLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTN---CDLQMVGDEFSRKPYAIAVQQDRD-ARELFCNVHANILSIPF 391 (444)
Q Consensus 316 ~~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~---c~l~~~~~~~~~~~~~~~~~k~sp-~~~~in~~il~l~e~G~ 391 (444)
+.++++++|.+|+ .+|++.+...+.++.++. ..+.+++..+...+++++++|+++ +.+.||++|.++.++|.
T Consensus 163 ~~~~~~~~L~~G~----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~ 238 (287)
T 2vha_A 163 DHGDSFRTLESGR----AVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGE 238 (287)
T ss_dssp SHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHcCC----eeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHhCch
Confidence 8999999999997 899999988888887753 368888877778889999999986 99999999999999999
Q ss_pred cccCCCCCcccccccccCC
Q psy12229 392 PFIGVDGTSVCSSIFDTDG 410 (444)
Q Consensus 392 i~~~~~~~~~~~~kw~~~~ 410 (444)
++++ .+||+...
T Consensus 239 ~~~i-------~~k~~~~~ 250 (287)
T 2vha_A 239 AEKW-------FDKWFKNP 250 (287)
T ss_dssp HHHH-------HHHHHHSC
T ss_pred HHHH-------HHHHcCCC
Confidence 9999 99999864
No 35
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.77 E-value=3.8e-18 Score=163.55 Aligned_cols=217 Identities=21% Similarity=0.231 Sum_probs=181.1
Q ss_pred eeeEEEe-ccCCCeEEEecCCCCCceeeeecHHHHHHHHHHHc---CCeEEEEEcCCCCCccccCCCccchhHHHHhccc
Q psy12229 5 TNISDSR-LKQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLV---GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80 (444)
Q Consensus 5 ~~l~V~~-~~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~l---nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~ 80 (444)
.+|+|.+ .++|||.+.+.++ +..|+++|+++.+++++ |.+++++.. .|..++.++.+|+
T Consensus 44 ~~l~v~~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~~~~g~~~~~~~~------------~~~~~~~~l~~G~ 106 (292)
T 1xt8_A 44 GVVRIGVFGDKPPFGYVDEKG-----NNQGYDIALAKRIAKELFGDENKVQFVLV------------EAANRVEFLKSNK 106 (292)
T ss_dssp SSEEEEECSEETTTEEECTTS-----CEESHHHHHHHHHHHHHHSCTTCEEEEEC------------CGGGHHHHHHTTS
T ss_pred CeEEEEECCCCCCeeEECCCC-----CEeeEhHHHHHHHHHHhccCCceEEEEEc------------CHHHHHHHHhCCC
Confidence 4689976 5799999997666 69999999999999999 999999865 4788999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
+|++++++..+.+|.+.+.|+.|++. ....+++++.
T Consensus 107 ~D~~~~~~~~~~~r~~~~~~s~p~~~-~~~~~~~~~~------------------------------------------- 142 (292)
T 1xt8_A 107 VDIILANFTQTPQRAEQVDFCSPYMK-VALGVAVPKD------------------------------------------- 142 (292)
T ss_dssp CSEECSSCBCCHHHHTTEEECCCCEE-EEEEEEEETT-------------------------------------------
T ss_pred eeEEeecCCCCcchhcceeeecccee-cceEEEEECC-------------------------------------------
Confidence 99998888889999999999999999 8999998764
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
.+|++++||.
T Consensus 143 ----------------------------------------------------------------------~~i~~~~dL~ 152 (292)
T 1xt8_A 143 ----------------------------------------------------------------------SNITSVEDLK 152 (292)
T ss_dssp ----------------------------------------------------------------------CCCCSSGGGT
T ss_pred ----------------------------------------------------------------------CCCCCHHHhC
Confidence 2578889996
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEA 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~ 320 (444)
+ .++++..++....+++.... ..++ ....+.+++
T Consensus 153 g---~~i~~~~g~~~~~~l~~~~~----------------------~~~~---------------------~~~~~~~~~ 186 (292)
T 1xt8_A 153 D---KTLLLNKGTTADAYFTQNYP----------------------NIKT---------------------LKYDQNTET 186 (292)
T ss_dssp T---SEEEEETTSHHHHHHHHHCT----------------------TSEE---------------------EEESSHHHH
T ss_pred C---CEEEEeCCCcHHHHHHHhCC----------------------CceE---------------------EEcCCHHHH
Confidence 5 37888888887777654210 0001 124588999
Q ss_pred HHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCcccccce-EEEecCCCc-hhhhhHHHHHHHhcCCccccCCCC
Q psy12229 321 VQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFSRKPY-AIAVQQDRD-ARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 321 ~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~~~~~-~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+++|.+|+ .+|++.+...+.+..++..++.++...+...++ +++++|++| +.+.+|++|.++.++|.++++
T Consensus 187 ~~~L~~G~----vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i--- 259 (292)
T 1xt8_A 187 FAALMDKR----GDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKA--- 259 (292)
T ss_dssp HHHHHTTS----SSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHHH---
T ss_pred HHHHHcCC----ccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHH---
Confidence 99999998 899999998888888766667777766666777 899999987 999999999999999999999
Q ss_pred CcccccccccC
Q psy12229 399 TSVCSSIFDTD 409 (444)
Q Consensus 399 ~~~~~~kw~~~ 409 (444)
.+||+..
T Consensus 260 ----~~k~~~~ 266 (292)
T 1xt8_A 260 ----YDETLKA 266 (292)
T ss_dssp ----HHHHTGG
T ss_pred ----HHHhcCC
Confidence 9999985
No 36
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.76 E-value=5.8e-18 Score=162.47 Aligned_cols=217 Identities=17% Similarity=0.207 Sum_probs=182.2
Q ss_pred eeeEEEe-ccCCCeEEEecCCCCCceeeeecHHHHHHHHHHHc---CCeEEEEEcCCCCCccccCCCccchhHHHHhccc
Q psy12229 5 TNISDSR-LKQEPFVMREESEGGGGVKYKGYCIDLIEEIRKLV---GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR 80 (444)
Q Consensus 5 ~~l~V~~-~~~~Pf~~~~~~~~~~~~~~~G~~~dil~~la~~l---nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~ 80 (444)
++|+|.+ .++|||.+.+.++ +..|+++|+++.+++++ |.+++++.. .|..++.++.+|+
T Consensus 55 ~~l~vg~~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~~~~g~~v~~~~~------------~~~~~~~~l~~G~ 117 (291)
T 2yjp_A 55 GVIRIGVFGDKPPFGYVDANG-----KNQGFDVEIAKDLAKDLLGSPDKVEFVLT------------EAANRVEYVRSGK 117 (291)
T ss_dssp TCEEEEECSEETTTEEECTTS-----CEESHHHHHHHHHHHHHHSCGGGEEEEEC------------CGGGHHHHHHTTS
T ss_pred CeEEEEEcCCCCCceEECCCC-----CEeehHHHHHHHHHHHhccCCceEEEEEc------------cHHHHHHHHhCCC
Confidence 4699976 6799999998666 69999999999999999 999999865 4788999999999
Q ss_pred ccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCCC
Q psy12229 81 ADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPPG 160 (444)
Q Consensus 81 ~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~~ 160 (444)
+|+++++...+.+|.+.++|+.|+.. ....+++++.
T Consensus 118 ~D~~~~~~~~~~~r~~~~~~~~p~~~-~~~~l~~~~~------------------------------------------- 153 (291)
T 2yjp_A 118 VDLILANFTQTPERAEAVDFADPYMK-VALGVVSPKN------------------------------------------- 153 (291)
T ss_dssp CSEECSSCBCCHHHHTTEEECCCCEE-ECEEEEEETT-------------------------------------------
T ss_pred eeEEEeCCCCChHHHccceeccCeee-cceEEEEeCC-------------------------------------------
Confidence 99999888889999999999999999 8999999765
Q ss_pred CCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHhh
Q psy12229 161 DILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDLS 240 (444)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL~ 240 (444)
.+|++++||.
T Consensus 154 ----------------------------------------------------------------------~~i~sl~dL~ 163 (291)
T 2yjp_A 154 ----------------------------------------------------------------------KPITDMAQLK 163 (291)
T ss_dssp ----------------------------------------------------------------------SCCCSGGGGT
T ss_pred ----------------------------------------------------------------------CCCCCHHHhC
Confidence 2578999996
Q ss_pred hCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHHH
Q psy12229 241 KQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEA 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e~ 320 (444)
+ .++++..++....+++.... ..++ ....+..++
T Consensus 164 g---k~v~~~~g~~~~~~l~~~~~----------------------~~~~---------------------~~~~~~~~~ 197 (291)
T 2yjp_A 164 D---QTLLVNKGTTADAFFTKSHP----------------------EVKL---------------------LKFDQNTET 197 (291)
T ss_dssp T---SEEEEETTSHHHHHHHHHCT----------------------TSEE---------------------EEESSHHHH
T ss_pred C---CEEEEecCCcHHHHHHHhCC----------------------CceE---------------------EEeCCHHHH
Confidence 5 47888888887777654210 0011 124589999
Q ss_pred HHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCcccccce-EEEecCCCc-hhhhhHHHHHHHhcCCccccCCCC
Q psy12229 321 VQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFSRKPY-AIAVQQDRD-ARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 321 ~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~~~~~-~~~~~k~sp-~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+++|.+|+ .+|++.+...+.+..++...+.++...+...++ +++++|++| +.+.||++|.++.++|.++++
T Consensus 198 ~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i--- 270 (291)
T 2yjp_A 198 FDALKDGR----GVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAA--- 270 (291)
T ss_dssp HHHHHTTS----SSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCHHHHHHHHHHHHHHHHHSHHHHH---
T ss_pred HHHHHcCC----ccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHH---
Confidence 99999997 899999998888888766668888777777777 999999987 999999999999999999999
Q ss_pred CcccccccccC
Q psy12229 399 TSVCSSIFDTD 409 (444)
Q Consensus 399 ~~~~~~kw~~~ 409 (444)
.+||+..
T Consensus 271 ----~~k~~~~ 277 (291)
T 2yjp_A 271 ----YEKTLLP 277 (291)
T ss_dssp ----HHHHTHH
T ss_pred ----HHHhccc
Confidence 9999874
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.65 E-value=1.3e-15 Score=142.05 Aligned_cols=215 Identities=13% Similarity=0.180 Sum_probs=170.4
Q ss_pred eeeEEEec-cCCCeEEEec-CCCCCceeeeecHHHHHHHHHHHc---CCeEEEEEcCCCCCccccCCCccchhHHHHhcc
Q psy12229 5 TNISDSRL-KQEPFVMREE-SEGGGGVKYKGYCIDLIEEIRKLV---GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEK 79 (444)
Q Consensus 5 ~~l~V~~~-~~~Pf~~~~~-~~~~~~~~~~G~~~dil~~la~~l---nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g 79 (444)
++|+|.+. .+|||.+.+. ++ +..|+++|+++.+++++ |.+++++.. +|..++..+.+|
T Consensus 38 ~~l~vg~~~~~~p~~~~~~~~g-----~~~G~~~~l~~~~~~~~~~pg~~v~~~~~------------~~~~~~~~l~~g 100 (259)
T 2v25_A 38 GQLIVGVKNDVPHYALLDQATG-----EIKGFEVDVAKLLAKSILGDDKKIKLVAV------------NAKTRGPLLDNG 100 (259)
T ss_dssp TCEEEEECSEETTTEEEETTTT-----EEESHHHHHHHHHHHHHHSCTTSEEEEEC------------CTTTHHHHHHTT
T ss_pred CeEEEEECCCCCCeEEEECCCC-----eEEEeeHHHHHHHHHHhcCCCcceEEEEc------------CHHHHHHHHhCC
Confidence 46899764 5899999873 44 79999999999999999 999999865 568899999999
Q ss_pred cccEEeecccccccccccccccccceecccEEEEEeCCCCCCcccccccccchhHHHHHHHHHHHHhcceeccccccCCC
Q psy12229 80 RADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVWLCILAAYCNLDGEQMKYLIQVNPP 159 (444)
Q Consensus 80 ~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp~~~~~~~~~~~l~pF~~~vWi~i~~~~~~~~~~~~~~~~~~~~~ 159 (444)
++|++++++..+.+|.+.++|+.|++. ....+++++.
T Consensus 101 ~~D~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~------------------------------------------ 137 (259)
T 2v25_A 101 SVDAVIATFTITPERKRIYNFSEPYYQ-DAIGLLVLKE------------------------------------------ 137 (259)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEE-EEEEEEEEGG------------------------------------------
T ss_pred CCCEEEecCccCHHHHhcCccccccee-CceEEEEeCC------------------------------------------
Confidence 999998888888899999999999999 8999999764
Q ss_pred CCCCcccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCCChHHh
Q psy12229 160 GDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIESLDDL 239 (444)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~sl~dL 239 (444)
.+|++++||
T Consensus 138 -----------------------------------------------------------------------~~i~~~~dL 146 (259)
T 2v25_A 138 -----------------------------------------------------------------------KKYKSLADM 146 (259)
T ss_dssp -----------------------------------------------------------------------GCCCSGGGC
T ss_pred -----------------------------------------------------------------------CCCCCHHHh
Confidence 246788999
Q ss_pred hhCCceeeEecCCChhhHHhhhhhhhhhHHHHHHhhhccCCCCcHHHHhhhhcccCCcchhHHHHHHHHHhcCCCCCHHH
Q psy12229 240 SKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEE 319 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~e 319 (444)
.++ ++++..++....+++... +..+++ . +.....+..+
T Consensus 147 ~g~---~i~~~~g~~~~~~~~~~~----------~~~g~~----------~-------------------~~~~~~~~~~ 184 (259)
T 2v25_A 147 KGA---NIGVAQAATTKKAIGEAA----------KKIGID----------V-------------------KFSEFPDYPS 184 (259)
T ss_dssp TTC---EEEEETTCSHHHHHHHHH----------HHTTCC----------C-------------------EEEEESSHHH
T ss_pred CCC---EEEEecCCchHHHHHHHH----------HhcCCc----------e-------------------eEEEeCCHHH
Confidence 763 688888777776665421 000000 0 0112458899
Q ss_pred HHHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeCCcccccceEEEecCCC-chhhhhHHHHHHHhcCCccccCCCC
Q psy12229 320 AVQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDEFSRKPYAIAVQQDR-DARELFCNVHANILSIPFPFIGVDG 398 (444)
Q Consensus 320 ~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~~~~~~~~~~~~~~k~s-p~~~~in~~il~l~e~G~i~~~~~~ 398 (444)
+++.|..|+ .+|++.+...+.++.++... +++..+...+++++++|++ .+.+.+|++|.++.++ ++++
T Consensus 185 ~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i--- 253 (259)
T 2v25_A 185 IKAALDAKR----VDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDAL--- 253 (259)
T ss_dssp HHHHHHTTS----SSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHH---
T ss_pred HHHHHHcCC----CcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHH---
Confidence 999999997 89999998888888776554 5566666778899999998 5999999999999999 8888
Q ss_pred Ccccccccc
Q psy12229 399 TSVCSSIFD 407 (444)
Q Consensus 399 ~~~~~~kw~ 407 (444)
.+||.
T Consensus 254 ----~~k~~ 258 (259)
T 2v25_A 254 ----AKKWG 258 (259)
T ss_dssp ----HHHTT
T ss_pred ----HHHhC
Confidence 88884
No 38
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.23 E-value=3.2e-06 Score=77.25 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=63.0
Q ss_pred eeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccc------cccccccccc
Q psy12229 30 KYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAE------RENVVDFTVP 103 (444)
Q Consensus 30 ~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~------r~~~~dfS~p 103 (444)
.+.|+.--|-+.+. ++.+++.... .+.+.+..|++|++|+++.++..+++ |...++|+.|
T Consensus 29 ~yeGlatgl~~~f~---gi~~~i~~mr-----------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~ 94 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIPFYYAHMR-----------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPH 94 (231)
T ss_dssp HHHHHHHHHHHTTT---TSCEEEEECS-----------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTT
T ss_pred hhhHHHHHHHHHhc---CCcEEEEEcc-----------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCC
Confidence 47888888888884 8888888654 68899999999999999999999999 9999999999
Q ss_pred ceecccEEEEEeCC
Q psy12229 104 YYDLVGITILMKKP 117 (444)
Q Consensus 104 ~~~~~~~~ilvp~~ 117 (444)
|+. +.-.+++.++
T Consensus 95 yYv-~~h~li~~~~ 107 (231)
T 2ozz_A 95 TYV-GEHQLICRKG 107 (231)
T ss_dssp SSS-CCEEEEEETT
T ss_pred ccc-cCeEEEEeCC
Confidence 997 6667777655
No 39
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.03 E-value=2.2e-05 Score=75.55 Aligned_cols=77 Identities=8% Similarity=-0.086 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHhcCCCCCceEEEecccchhhhhcCC----CccEEeCCcccccceEEEecCCC--chhhhhHHHHHHHhc
Q psy12229 315 NSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTN----CDLQMVGDEFSRKPYAIAVQQDR--DARELFCNVHANILS 388 (444)
Q Consensus 315 ~~~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~----c~l~~~~~~~~~~~~~~~~~k~s--p~~~~in~~il~l~e 388 (444)
.+..+++..|..|+ .+|.+.+...+.++.+.. .++.++........++++++++. .+++.++.++.++.+
T Consensus 155 g~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~ 230 (310)
T 3n5l_A 155 SSHEVNALAVANKQ----VDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGA 230 (310)
T ss_dssp CCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHcCC----ccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCC
Confidence 46778999999997 889998887777776643 35666654333334589999984 399999999999999
Q ss_pred CCccccC
Q psy12229 389 IPFPFIG 395 (444)
Q Consensus 389 ~G~i~~~ 395 (444)
+|..+++
T Consensus 231 d~~~~~~ 237 (310)
T 3n5l_A 231 NAEQKKV 237 (310)
T ss_dssp SHHHHHH
T ss_pred ChhHHHH
Confidence 9987666
No 40
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.91 E-value=5.9e-05 Score=72.87 Aligned_cols=77 Identities=9% Similarity=-0.006 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHhcCCCCCceEEEecccchhhhhcCC----CccEEeCCcccccceEEEecCCC--chhhhhHHHHHHHhc
Q psy12229 315 NSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTN----CDLQMVGDEFSRKPYAIAVQQDR--DARELFCNVHANILS 388 (444)
Q Consensus 315 ~~~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~----c~l~~~~~~~~~~~~~~~~~k~s--p~~~~in~~il~l~e 388 (444)
.+..+++..|..|+ .+|.+.+...+..+.++. .++.++........++++++|+- .+++.++.++..+.+
T Consensus 164 ~~~~~a~~al~~G~----vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~ 239 (321)
T 3p7i_A 164 AGHETNALAVANKQ----VDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGK 239 (321)
T ss_dssp CCHHHHHHHHHTTS----SSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCC----ceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCC
Confidence 36788999999997 889998887777766532 35777754333334688999984 399999999999999
Q ss_pred CCccccC
Q psy12229 389 IPFPFIG 395 (444)
Q Consensus 389 ~G~i~~~ 395 (444)
+|..+++
T Consensus 240 d~~~~~~ 246 (321)
T 3p7i_A 240 TPEEKAV 246 (321)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 9876555
No 41
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=96.84 E-value=0.0055 Score=59.31 Aligned_cols=69 Identities=16% Similarity=0.040 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccc----ccccccccccccceecccEEEE
Q psy12229 38 LIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVM----AERENVVDFTVPYYDLVGITIL 113 (444)
Q Consensus 38 il~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t----~~r~~~~dfS~p~~~~~~~~il 113 (444)
+.+.+++. |++++++... ..|+...++.+|.+|++|+++.+.... .++.....++.++.. .+..++
T Consensus 35 l~~~~~~~-G~~v~~~~~~--------~~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~lv 104 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAA--------MASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTT-SNSYLV 104 (348)
T ss_dssp HHHHHHHT-TEEEEEEEEC--------TTCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCC-CCCEEE
T ss_pred HHHHHHhc-CCeEEEEecc--------cCCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCC-CceEEE
Confidence 44566655 8899885332 123445688999999999998655432 222233333344444 455555
Q ss_pred EeC
Q psy12229 114 MKK 116 (444)
Q Consensus 114 vp~ 116 (444)
+++
T Consensus 105 v~~ 107 (348)
T 3uif_A 105 VPK 107 (348)
T ss_dssp EET
T ss_pred EEC
Confidence 543
No 42
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=96.77 E-value=0.027 Score=53.08 Aligned_cols=64 Identities=14% Similarity=-0.026 Sum_probs=40.8
Q ss_pred HHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccc-cccc----cccccccceecccEEEEE
Q psy12229 41 EIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMA-EREN----VVDFTVPYYDLVGITILM 114 (444)
Q Consensus 41 ~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~-~r~~----~~dfS~p~~~~~~~~ilv 114 (444)
.+++.+ +.+++++..+ ++..++.+|.+|++|+++.+..... .+.+ .+.++.++.. .+.++++
T Consensus 24 ~~~~~~~g~~v~~~~~~-----------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~lv~ 91 (308)
T 2x26_A 24 LLEKRYPESKISWVEFP-----------AGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKP-KAEVILV 91 (308)
T ss_dssp HHHHHCTTSEEEEEECS-----------SHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCG-GGEEEEE
T ss_pred hHhHhcCCCceEEEECC-----------CcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCC-CceEEEE
Confidence 567777 8899998653 3368899999999999987654321 1111 1234444444 5666666
Q ss_pred eC
Q psy12229 115 KK 116 (444)
Q Consensus 115 p~ 116 (444)
++
T Consensus 92 ~~ 93 (308)
T 2x26_A 92 AE 93 (308)
T ss_dssp ET
T ss_pred eC
Confidence 54
No 43
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=96.41 E-value=0.06 Score=51.26 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=42.3
Q ss_pred HHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccc----ccccccccccccceecccEEEEEeC
Q psy12229 42 IRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVM----AERENVVDFTVPYYDLVGITILMKK 116 (444)
Q Consensus 42 la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t----~~r~~~~dfS~p~~~~~~~~ilvp~ 116 (444)
+.+..+++++++... ++..++..+.+|++|+++++.... .++.....++.++.. .+..+++++
T Consensus 58 ~~~~~g~~v~~~~~~-----------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ 124 (346)
T 3qsl_A 58 FFKDEGLDVSIADFA-----------GGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRA-PMIGVGVSK 124 (346)
T ss_dssp HHHHTTCEEEEEECS-----------SHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSS-CCEEEEEET
T ss_pred chHhhCCeEEEEecC-----------ChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccC-CCcEEEEec
Confidence 456779999998543 567899999999999998876543 233334444444444 455666654
No 44
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=96.29 E-value=0.13 Score=48.89 Aligned_cols=37 Identities=8% Similarity=-0.024 Sum_probs=28.5
Q ss_pred HHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecc
Q psy12229 41 EIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSL 88 (444)
Q Consensus 41 ~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~ 88 (444)
.+.+.+ +.+++++..+ ++..++.+|.+|++|+++.+.
T Consensus 50 ~~~~~~~g~~v~~~~~~-----------~~~~~~~al~~G~~D~~~~~~ 87 (324)
T 3ksx_A 50 LLEQRFPRTKITWVEFP-----------AGPQLLEALNVGSIDLGGAGD 87 (324)
T ss_dssp HHHHHCTTSEEEEEEES-----------SHHHHHHHHHTTSCSEEEEES
T ss_pred HHHHhcCCCceEEEECC-----------CHHHHHHHHHCCCCCEEeecC
Confidence 455555 8899988653 457889999999999987654
No 45
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.11 E-value=0.15 Score=48.60 Aligned_cols=78 Identities=8% Similarity=-0.031 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHhcCCCCCceEEEecccch-hhhhcCCCc-cEEeC--------------C-c---c-cccceEEEecCC
Q psy12229 314 PNSLEEAVQRVRDSKSSSEGFGYLGDATDI-RYLVMTNCD-LQMVG--------------D-E---F-SRKPYAIAVQQD 372 (444)
Q Consensus 314 ~~~~~e~~~~v~~~~~~~~~~a~i~d~~~~-~y~~~~~c~-l~~~~--------------~-~---~-~~~~~~~~~~k~ 372 (444)
.....+++..|..|+ .++.+.+...+ .+.....-+ |.+.. | . + ....++++.|++
T Consensus 175 y~G~~~a~~al~~G~----vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 250 (314)
T 2dvz_A 175 YKGSGPAVADAVGGQ----IELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKG 250 (314)
T ss_dssp CSSHHHHHHHHHHTS----SSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETT
T ss_pred cCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCC
Confidence 346788999999997 77777765444 344332211 11111 0 0 1 123468899999
Q ss_pred Cc--hhhhhHHHHHHHhcCCccccC
Q psy12229 373 RD--ARELFCNVHANILSIPFPFIG 395 (444)
Q Consensus 373 sp--~~~~in~~il~l~e~G~i~~~ 395 (444)
-| .++++++++.++.+++-+++.
T Consensus 251 ~p~~vv~~l~~al~~~~~~p~~~~~ 275 (314)
T 2dvz_A 251 TPMDVVNKLRDAAVVALKDPKVIKA 275 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHH
Confidence 54 999999999999999876665
No 46
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=95.82 E-value=0.21 Score=47.30 Aligned_cols=76 Identities=12% Similarity=0.003 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHhcCCCCCceEEEecccch-hhhhcCCCccEEe---CC------------------cc-cccceEEEec
Q psy12229 314 PNSLEEAVQRVRDSKSSSEGFGYLGDATDI-RYLVMTNCDLQMV---GD------------------EF-SRKPYAIAVQ 370 (444)
Q Consensus 314 ~~~~~e~~~~v~~~~~~~~~~a~i~d~~~~-~y~~~~~c~l~~~---~~------------------~~-~~~~~~~~~~ 370 (444)
.....+++..|..|+ .++.+.+...+ .+.... ++..+ .+ .+ ....++++.|
T Consensus 162 y~g~~~a~~al~~G~----vD~~~~~~~~~~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap 235 (301)
T 2qpq_A 162 YKGCGPALNDVLGSQ----IGLAVVTASSAIPFIKAG--KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVP 235 (301)
T ss_dssp CSSHHHHHHHHHTTS----SSCEEEEHHHHHHHHHTT--SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEE
T ss_pred cCChHHHHHHHHCCC----ccEEEEcHHHHHHHHhcC--CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEec
Confidence 347789999999997 77777764444 343332 22222 10 01 1234688999
Q ss_pred CCCc--hhhhhHHHHHHHhcCCccccC
Q psy12229 371 QDRD--ARELFCNVHANILSIPFPFIG 395 (444)
Q Consensus 371 k~sp--~~~~in~~il~l~e~G~i~~~ 395 (444)
++-| .++++++++.++.+++.+++.
T Consensus 236 ~g~p~~vv~~l~~al~~~~~~~~~~~~ 262 (301)
T 2qpq_A 236 GATPMAVRQKLYDGIAKVMQRDDVQKK 262 (301)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9954 999999999999999886665
No 47
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=95.66 E-value=0.022 Score=44.91 Aligned_cols=57 Identities=25% Similarity=0.155 Sum_probs=52.1
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcc
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVS 227 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~ 227 (444)
....++||++.+++..| +++..|.+..+|++.+.|+++++.+.+...+.+.+.++..
T Consensus 40 ~~~~a~y~~~~T~tTvG-------yGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVG-------YGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp CGGGTTTTTTGGGGCCS-------CCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred cHHHHHHHHHHHHhccc-------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999 6888999999999999999999999999999999998764
No 48
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=95.61 E-value=0.45 Score=45.24 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHhcCCCCCceEEEecccch-hhhhcCCCc-cEEeC--------C--c--------c-cccceEEEecCC
Q psy12229 314 PNSLEEAVQRVRDSKSSSEGFGYLGDATDI-RYLVMTNCD-LQMVG--------D--E--------F-SRKPYAIAVQQD 372 (444)
Q Consensus 314 ~~~~~e~~~~v~~~~~~~~~~a~i~d~~~~-~y~~~~~c~-l~~~~--------~--~--------~-~~~~~~~~~~k~ 372 (444)
.....+++..|..|+ .++.+.+...+ .+.....-+ |.+.. + . + ....++++.|++
T Consensus 171 y~G~~~a~~aL~~G~----VD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g 246 (312)
T 2f5x_A 171 YKGTAPAMNDLLGKQ----VDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKG 246 (312)
T ss_dssp CSSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETT
T ss_pred cCChHHHHHHHHcCC----ccEEEechHHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCC
Confidence 347789999999997 77777765444 343332211 11111 0 0 1 122468899999
Q ss_pred Cc--hhhhhHHHHHHHhcCCccccC
Q psy12229 373 RD--ARELFCNVHANILSIPFPFIG 395 (444)
Q Consensus 373 sp--~~~~in~~il~l~e~G~i~~~ 395 (444)
-| .++++++++.++.+++.+++.
T Consensus 247 ~p~~vv~~l~~al~~~~~~p~~~~~ 271 (312)
T 2f5x_A 247 TPKPVVDKLVKSLQAGLADPKFQER 271 (312)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHH
Confidence 54 999999999999999876555
No 49
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.27 E-value=0.039 Score=45.94 Aligned_cols=56 Identities=27% Similarity=0.236 Sum_probs=50.8
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhc
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTV 226 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~ 226 (444)
....++||++.+++..| +++..|.+..+|++.+.|+++|+.+.+...+.+.+.+..
T Consensus 40 ~~~~a~yf~~~T~tTvG-------yGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 40 TYPRALWWSVETATTVG-------YGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp CHHHHHHHHHHHHTTCC-------CSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred CHHHHHHHHheeeeccc-------CCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999 789999999999999999999999999999999998854
No 50
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.25 E-value=0.035 Score=45.15 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=52.2
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcc
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVS 227 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~ 227 (444)
....+.||++.+++..| +++..|.+..+|++.+.|+++++.+.+...+.+++.+...
T Consensus 61 ~~~~a~y~~~~T~tTvG-------yGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 61 TYPRALWWACETATTVA-------YGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp SHHHHHHHHHHHHTTCC-------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeee-------cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999 7899999999999999999999999999999999998754
No 51
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.17 E-value=0.058 Score=44.80 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=51.4
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcc
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVS 227 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~ 227 (444)
...+.||++.+++..| +++..|.+..+|++.+.|+++|+.+.+...+.+++.+...
T Consensus 44 ~~~a~y~~~~T~tTvG-------yGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 44 YPDALWWAIVTATTVG-------YGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp HHHHHHHHHHHHTTCC-------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHccc-------CCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999 7899999999999999999999999999999999988653
No 52
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=94.99 E-value=0.072 Score=51.09 Aligned_cols=71 Identities=8% Similarity=-0.049 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhcCCCCCceEEEecccchhhhhcCCC-ccEEeCCccc-ccc-eEEEecCC----Cc-----hhhhhHHHH
Q psy12229 316 SLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTNC-DLQMVGDEFS-RKP-YAIAVQQD----RD-----ARELFCNVH 383 (444)
Q Consensus 316 ~~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c-~l~~~~~~~~-~~~-~~~~~~k~----sp-----~~~~in~~i 383 (444)
+..+++..+.+|+ .+|++...........+.. +.......+. ..+ .+++++++ .| +.+.+++.+
T Consensus 190 ~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~ 265 (341)
T 3un6_A 190 SPAEMPAALSEHR----ITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSG 265 (341)
T ss_dssp CGGGHHHHHHTTS----CSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCC----CCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHH
Confidence 4567888899997 8899888776665554433 3322233332 222 46777654 33 555666666
Q ss_pred HHHhcCC
Q psy12229 384 ANILSIP 390 (444)
Q Consensus 384 l~l~e~G 390 (444)
..+.+++
T Consensus 266 ~~~~~~~ 272 (341)
T 3un6_A 266 FKMNDRK 272 (341)
T ss_dssp HHTTSHH
T ss_pred HHHHhCH
Confidence 6666554
No 53
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=94.97 E-value=0.048 Score=46.36 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=53.2
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhccc
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSR 228 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~ 228 (444)
....++||++.+++..| |++..|.+..+|++.+.++++++.+.+...+.+++.++...
T Consensus 84 s~~~a~y~s~vTltTVG-------YGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 84 SYPDALWWSVETATTVG-------YGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp SHHHHHHHHHHHHTTCC-------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cccceeheeeeeeeccc-------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999 78899999999999999999999999999999999998654
No 54
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=94.68 E-value=0.58 Score=40.38 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=48.1
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-.+++..+.++. +.++++... ....+..+|.+|++|+++....... ..+. ..+... ..++
T Consensus 17 ~~l~~~l~~~~~~~P~i~i~i~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~~---~~~~-~~~l~~-~~~~ 79 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMPLMLEEN------------YTHTLTESLKRGDVDAIIVAEPFQE---PGIV-TEPLYD-EPFF 79 (219)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEE------------CHHHHHHHHHHTSSSEEEEESSCCC---TTEE-EEEEEE-EEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeC------------CcHHHHHHHHcCCCCEEEEcCCCCC---CCee-EEEeee-ceEE
Confidence 45556777777776 688888743 4467899999999999998664322 2332 456677 7888
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 80 ~v~~~~ 85 (219)
T 3jv9_A 80 VIVPKG 85 (219)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 998876
No 55
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=94.49 E-value=0.2 Score=43.71 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=47.3
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-.+++..+.++. +.++++.. ++...+..+|.+|++|+++...... ...+. ..++.. ..++
T Consensus 21 ~~l~~~l~~f~~~~P~i~i~i~~------------~~~~~~~~~l~~g~~Di~i~~~~~~---~~~~~-~~~l~~-~~~~ 83 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWPQVELDIVS------------GFQADPVGLLLQHRADLAIVSEAEK---QNGIS-FQPLFA-YEMV 83 (222)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEC------------CCCSCTHHHHHTTSCSEEEESCCCC---CTTEE-EEEEEE-EEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEec------------CCHHHHHHHHHcCCcCEEEecCCCC---cCCeE-EEEeec-CcEE
Confidence 44566777777776 57777763 3456789999999999999854432 22332 456677 7888
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 84 ~v~~~~ 89 (222)
T 4ab5_A 84 GICAPD 89 (222)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 888765
No 56
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=94.02 E-value=0.074 Score=49.89 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=51.1
Q ss_pred eeeecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecc-cccccccc---cccccccce
Q psy12229 30 KYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSL-SVMAEREN---VVDFTVPYY 105 (444)
Q Consensus 30 ~~~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~-~~t~~r~~---~~dfS~p~~ 105 (444)
.+.|+.+..-+-+.++.|++++++... ....++.+|.+|++|+++++. .....|.+ ...++.++.
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~v~~~~~~-----------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLDVDIVFPT-----------NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVR 84 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEEEEEECCS-----------STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEEC
T ss_pred ccHHHHHHHHcChHHHcCCcEEEecCC-----------CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEec
Confidence 468999999999999999999998542 335789999999999998872 32333332 233334444
Q ss_pred ecccEEEEEeC
Q psy12229 106 DLVGITILMKK 116 (444)
Q Consensus 106 ~~~~~~ilvp~ 116 (444)
. .+..+++++
T Consensus 85 ~-~~~~l~~~~ 94 (302)
T 3ix1_A 85 S-PLNHVMFLA 94 (302)
T ss_dssp S-CCEEEEEEG
T ss_pred c-CCEEEEEEC
Confidence 4 455666643
No 57
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=93.37 E-value=0.29 Score=42.99 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=47.7
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-.+++..+.++. +.++++... +...+..+|.+|++|+++....... ..+. +.+... ..++
T Consensus 24 ~~l~~~l~~~~~~~P~v~i~~~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~-~~~~ 86 (232)
T 3ho7_A 24 YLLPRVFPIWKKELAGLEIHVSEM------------QTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYY-EEFL 86 (232)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEC------------CHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEE-EEEE
T ss_pred hhhHHHHHHHHHHCCCcEEEEEeC------------CHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecc-cCEE
Confidence 35556677777666 567777633 4568899999999999998664332 2332 456777 7889
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 87 ~v~~~~ 92 (232)
T 3ho7_A 87 GYVSRC 92 (232)
T ss_dssp EEECTT
T ss_pred EEEcCC
Confidence 988765
No 58
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=92.41 E-value=0.22 Score=38.58 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=51.4
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhccc
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSR 228 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~ 228 (444)
...+.|++..++...| +++..|.+..+|++.+.|.++++.+.+...+.+++.+..++
T Consensus 33 ~~~a~yf~~~T~tTvG-------yGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 89 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVG-------YGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89 (97)
T ss_dssp HHHHHHHHHHHHTTCC-------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHccC-------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4678899999999999 68899999999999999999999999999999999887553
No 59
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=91.57 E-value=0.88 Score=40.24 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=47.6
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-..++..+.++. +.++++... +...++.+|.+|++|+++..... ....+. +.+... ..++
T Consensus 32 ~~l~~~l~~f~~~~P~i~l~~~~~------------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~-~~~l~~-~~~~ 94 (241)
T 3oxn_A 32 TILPFALPRIYQEAPNVSFNFLPL------------QHDRLSDQLTYEGADLAICRPTG---PVEPLR-SEILGR-VGVL 94 (241)
T ss_dssp HTHHHHHHHHHHHCTTCEEEEEEC------------CGGGHHHHHHTSCCSEEEECCSS---CCTTEE-EEEEEC-CCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC------------CcccHHHHHHcCCCCEEEecCCC---CCccce-eEEeec-ccEE
Confidence 34456677777765 678888743 45678999999999999985432 223332 456777 7889
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 95 ~v~~~~ 100 (241)
T 3oxn_A 95 CLLSKQ 100 (241)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 998876
No 60
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=91.37 E-value=0.28 Score=36.62 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=48.1
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhh
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFL 224 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~L 224 (444)
..++.|++..++...| +++..|.+..+|++...+.++++.+.+...+.+.+.+
T Consensus 29 ~~~a~yf~~~T~tTvG-------yGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVG-------YGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCC-------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccC-------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999999999 6889999999999999999999999999998888765
No 61
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=91.19 E-value=0.1 Score=44.82 Aligned_cols=56 Identities=27% Similarity=0.236 Sum_probs=51.2
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcc
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVS 227 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~ 227 (444)
...++||++.++++.| +++..|.+..+|++.+.|+++|+++.+...+.+++.++..
T Consensus 68 ~~~a~yf~~~T~tTvG-------yGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 68 YPRALWWSVETATTVG-------YGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp TTTTTTTTHHHHSCCC-------CSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHHHHHhcccc-------CCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999999999 6899999999999999999999999999999999999743
No 62
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=91.18 E-value=0.47 Score=45.44 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=53.3
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccC
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRL 229 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~ 229 (444)
....++||++.+++..| |++..|.+..+|++.++++++++++.+...+.+.+.++.+..
T Consensus 96 s~~~a~yfs~vT~tTVG-------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVG-------YGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp STHHHHHHHTTTTTTCC-------CSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cHHHhHhhhheeeeecC-------CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999 788999999999999999999999999999999999987753
No 63
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=91.18 E-value=2.4 Score=39.84 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=31.2
Q ss_pred ecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccc
Q psy12229 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLS 89 (444)
Q Consensus 33 G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~ 89 (444)
++.+-.-+-+.+..+++++++..+ .| ...++.+|.+|++|+++.+..
T Consensus 29 p~~~A~~~G~~~~~Gl~V~~~~~~---------~g-~~~~~~al~~G~~D~~~~~~~ 75 (321)
T 2x7q_A 29 PLFFAQQQGYYKAHDLSIEFVKVP---------EG-SGRLINLLNSNEVDIAIGLTE 75 (321)
T ss_dssp HHHHHHHTTHHHHTTCCEEEEECT---------TC-HHHHHHHHHTTSCSEEEEEHH
T ss_pred HHHHHHHCCcHHHCCceEEEEECC---------CC-HHHHHHHHHcCCccEEecCcH
Confidence 333333333556789999998653 11 123789999999999987663
No 64
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=90.85 E-value=2 Score=40.75 Aligned_cols=49 Identities=10% Similarity=-0.105 Sum_probs=35.1
Q ss_pred eeeecHHHHHHHHHHH----cCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccc
Q psy12229 30 KYKGYCIDLIEEIRKL----VGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLS 89 (444)
Q Consensus 30 ~~~G~~~dil~~la~~----lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~ 89 (444)
.+..+...+.+.+++. .+.++++... +...+.+..+.+|++|+++....
T Consensus 44 ~~~~~~~~la~~l~~~~~~~~g~~v~v~~~-----------~g~~~~i~~l~~g~~D~~~~~~~ 96 (327)
T 4ddd_A 44 VYYPIGGSICRFIASDYGKDNKIICSISST-----------TGSVYNLNSIRYSNMDISIVQSD 96 (327)
T ss_dssp SHHHHHHHHHHHHHHHHGGGTSEEEEEECC-----------CCHHHHHHHHHTTSCSEEEEEHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCeEEEEEec-----------CcHHHHHHHHHcCCCcEEEECcH
Confidence 3455666677777777 6777777632 23467889999999999987654
No 65
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=90.61 E-value=0.32 Score=38.86 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=50.1
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcc
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVS 227 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~ 227 (444)
..++.|+++.+++..| +++..|.+..+|++.+.|.+.++.+.+...+.+.+.++..
T Consensus 50 ~~~a~y~~~~T~tTvG-------yGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 50 PIDALYFSVVTLTTVG-------AGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp HHHHHHHHHHHHTSCC-------CSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccee-------CCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999 6888999999999999999999999999999999888543
No 66
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=90.55 E-value=2 Score=39.38 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccce-ecccEE
Q psy12229 34 YCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYY-DLVGIT 111 (444)
Q Consensus 34 ~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~-~~~~~~ 111 (444)
+-.+++..+.++. +.++++... +...++.++.+|++|+++....... ..+. ..+.. . ....
T Consensus 109 ~l~~~l~~f~~~~P~i~i~l~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~-~~~~ 171 (306)
T 3fzv_A 109 YLPGLIAGFRQAYPGVEIRIRDG------------EQQELVQGLTSGRFDLAFLYEHDLD---STIE-TEPLMPP-QRPH 171 (306)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE------------CHHHHHHHHHHTSCSEEEECSSSCC---TTEE-EEESSCC-BCCE
T ss_pred HHHHHHHHHHHHCCCeEEEEEeC------------CHHHHHHHHHCCCccEEEEeccccc---cccc-eeeeeec-cccE
Confidence 4455677777766 677777643 4567889999999999987543222 2232 34455 5 6677
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 172 ~v~~~~ 177 (306)
T 3fzv_A 172 ALLPEG 177 (306)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 777765
No 67
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=89.92 E-value=0.53 Score=42.10 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=50.7
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhc
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTV 226 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~ 226 (444)
....+.|+++.++++.| +++..|.+..+|++.+.+++.|+.+.+...|.+++.+..
T Consensus 165 ~~~~s~y~~~~t~tTvG-------yGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 165 SVFDALWWAVVTATTVG-------YGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SHHHHHHHHHHHHTTCC-------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHhHHhHHhccC-------CCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998 688899999999999999999999999999999988864
No 68
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=88.80 E-value=0.5 Score=39.50 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=47.5
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhh
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLT 225 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt 225 (444)
...+.||++.++++.| +++..|.+..+|++.+.|.++|+.+.+...+.+.+.+.
T Consensus 53 ~~~a~y~~~~t~tTvG-------yGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 53 PLDALYFSVVTLTTVG-------DGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp HHHHHHHHHHHHTTCC-------CSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHccC-------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999 68899999999999999999999999988887776553
No 69
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=88.65 E-value=3.4 Score=35.90 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEEE
Q psy12229 34 YCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITI 112 (444)
Q Consensus 34 ~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~i 112 (444)
+--.++..+.++. +.++++.. ++...++++|.+|++|++++..... ...+. +.|... +.+++
T Consensus 22 ~lp~~l~~f~~~~P~v~l~l~~------------~~~~~l~~~L~~g~iDl~i~~~~~~---~~~l~-~~~l~~-~~~~~ 84 (218)
T 2y7p_A 22 FMPPLMEALAQRAPHIQISTLR------------PNAGNLKEDMESGAVDLALGLLPEL---QTGFF-QRRLFR-HRYVC 84 (218)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEC------------CCTTTHHHHHHHTSSCEEEECCTTC---CTTEE-EEEEEE-ECEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEe------------CCcccHHHHHhCCCceEEEecCCCC---Cccee-EEEeee-ccEEE
Confidence 4446677777665 67888873 2456889999999999999743221 22343 356777 88999
Q ss_pred EEeCC
Q psy12229 113 LMKKP 117 (444)
Q Consensus 113 lvp~~ 117 (444)
++++.
T Consensus 85 v~~~~ 89 (218)
T 2y7p_A 85 MFRKD 89 (218)
T ss_dssp EEETT
T ss_pred EEcCC
Confidence 99876
No 70
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=88.29 E-value=6.2 Score=34.24 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEEE
Q psy12229 34 YCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITI 112 (444)
Q Consensus 34 ~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~i 112 (444)
+-.+++..+.++. +.++++... +...+++.|.+|++|+++...... ....+. ..+... ..+++
T Consensus 28 ~l~~~l~~f~~~~P~v~l~l~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~--~~~~l~-~~~l~~-~~~~~ 91 (228)
T 2fyi_A 28 SLPEVIKAFRELFPEVRLELIQG------------TPQEIATLLQNGEADIGIASERLS--NDPQLV-AFPWFR-WHHSL 91 (228)
T ss_dssp THHHHHHHHHHHCTTEEEEEEEC------------CHHHHHHHHHHTSCSEEEESSSST--TCTTEE-EEEEEE-ECEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEEeC------------CHHHHHHHHHcCCccEEEEecccC--CCCCce-EEEeee-cceEE
Confidence 4456677777776 567777632 456888999999999998753211 112232 356777 78888
Q ss_pred EEeCC
Q psy12229 113 LMKKP 117 (444)
Q Consensus 113 lvp~~ 117 (444)
++++.
T Consensus 92 v~~~~ 96 (228)
T 2fyi_A 92 LVPHD 96 (228)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 88765
No 71
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=88.28 E-value=0.65 Score=43.85 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=52.4
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhccc
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSR 228 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~ 228 (444)
....++||++.+++..| |++..|.+..+|++.+.+.+.|+++.+...|.+.+.++.+.
T Consensus 82 s~~~a~yfs~vT~tTvG-------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIG-------YGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp CHHHHHHHHHHHHTTCC-------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHhhhheeccC-------CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35678899999999999 78889999999999999999999999999999999998763
No 72
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=87.21 E-value=1.1 Score=42.59 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=52.8
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhccc
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSR 228 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~ 228 (444)
....++||++.+++..| |++..|.+..+|++.+++++.|+++.+.-.|.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVG-------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVG-------YGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCC-------CCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEecccc-------CCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999 78889999999999999999999999999999999998764
No 73
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=86.58 E-value=1.5 Score=38.08 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=46.7
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-.+++..+.++. +.++++... ....+++.|.+|++|+++...... ...+. +.+... +.++
T Consensus 18 ~~l~~~l~~f~~~~P~v~l~l~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~-~~~~ 80 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFPKLEMYLHEA------------QTHQLLAQLDSGKLDAVILALVKE---SEAFI-EVPLFD-EPML 80 (219)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEC------------CHHHHHHHHHHTSCSEEEEECCGG---GTTSE-EEEEEE-EEEE
T ss_pred hhhhHHHHHHHHHCCCeEEEEEEC------------ChHHHHHHHHcCCeeEEEecCCCC---CCCcc-eeeeec-ccEE
Confidence 45567777777776 567777632 457889999999999998743221 22333 356777 7888
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 81 ~v~~~~ 86 (219)
T 1i6a_A 81 LAIYED 86 (219)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 888876
No 74
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=86.03 E-value=9.7 Score=32.19 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=46.8
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-.+++..+.++. +.++++... +...+..++.+|++|+++...... ...+. +.+... +.++
T Consensus 18 ~~l~~~l~~f~~~~P~i~i~l~~~------------~~~~l~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~-~~~~ 80 (209)
T 2ql3_A 18 TILPSMLYAFTAEYPRASVEFRED------------TQNRLRTQLEGGELDVAIVYDLDL---SPEWQ-TVPLMT-REPM 80 (209)
T ss_dssp TTHHHHHHHHHHHCTTEEEEEEEC------------CHHHHHHHHHTTSCSEEEEESSSC---CTTEE-EEEEEE-ECCE
T ss_pred hhHHHHHHHHHHHCCCceEEEEEC------------cHHHHHHHHHcCCccEEEEecCCC---CCCce-EEEeec-CceE
Confidence 45667888888877 567777643 456788999999999998644221 12232 356677 7888
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 81 ~v~~~~ 86 (209)
T 2ql3_A 81 VVLGAE 86 (209)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 888765
No 75
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=85.55 E-value=12 Score=34.73 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHhcCCCCCceEEEecccchhhhhcCCCccEEeC--CcccccceEEEecCCCchhhhhHHHHHHHhcC
Q psy12229 314 PNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVG--DEFSRKPYAIAVQQDRDARELFCNVHANILSI 389 (444)
Q Consensus 314 ~~~~~e~~~~v~~~~~~~~~~a~i~d~~~~~y~~~~~c~l~~~~--~~~~~~~~~~~~~k~sp~~~~in~~il~l~e~ 389 (444)
+++.....+.+..|. +.+++-.. .+.... ..++..+. .......+.++.+++.+....+...+..+.+.
T Consensus 224 ~~~~~~~~~lv~~G~----Giailp~~-~~~~~~--~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~fi~~l~~~ 294 (324)
T 1al3_A 224 ATDADVIKTYVRLGL----GVGVIASM-AVDPVS--DPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPH 294 (324)
T ss_dssp ESSHHHHHHHHHHTS----CEEEEEGG-GCCTTT--CTTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTT
T ss_pred eCCHHHHHHHHHhCC----CeEEechh-hhhhhc--cCCeEEEECCCCCcceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457888899999986 77776542 222211 23455543 33334567788888877666666666665543
No 76
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=85.52 E-value=5.3 Score=36.65 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeec---ccccccccccccccccceecccE
Q psy12229 35 CIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGS---LSVMAERENVVDFTVPYYDLVGI 110 (444)
Q Consensus 35 ~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~---~~~t~~r~~~~dfS~p~~~~~~~ 110 (444)
-.+++..+.++. +.++++... +...++..+.+|++|+++.. .... ...+. +.+... ..+
T Consensus 116 l~~~l~~f~~~~P~i~i~l~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~~~~---~~~l~-~~~l~~-~~~ 178 (310)
T 2esn_A 116 LPPLMNRLQHSAPGVRLRLVNA------------ERKLSVEALASGRIDFALGYDEEHERL---PEGIQ-AHDWFA-DRY 178 (310)
T ss_dssp HHHHHHHHHHHSTTCEEEEECC------------SSSCCHHHHHHTSSSEEEECCSTTCCC---CTTEE-EEEEEE-ECE
T ss_pred HHHHHHHHHHHCCCeEEEEEeC------------CcccHHHHHHcCCCCEEEecCcccccC---CcCcc-eeeeec-cce
Confidence 345556666665 577777632 34567889999999999975 3221 22232 456777 788
Q ss_pred EEEEeCC
Q psy12229 111 TILMKKP 117 (444)
Q Consensus 111 ~ilvp~~ 117 (444)
++++++.
T Consensus 179 ~~v~~~~ 185 (310)
T 2esn_A 179 VVVARRD 185 (310)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 8888765
No 77
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=85.12 E-value=7.7 Score=33.71 Aligned_cols=68 Identities=7% Similarity=0.150 Sum_probs=46.6
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-..++..+.++. +.++++... +...++..|.+|++|+++...... ...+. +.+... +.++
T Consensus 43 ~~l~~~l~~f~~~~P~v~l~~~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~-~~~~ 105 (238)
T 2hxr_A 43 YFIGPLMADFYARYPSITLQLQEM------------SQEKIEDMLCRDELDVGIAFAPVH---SPELE-AIPLLT-ESLA 105 (238)
T ss_dssp TTHHHHHHHHHHHCTTSCEEEEEC------------CHHHHHHHHHTTSCSEEEEESSCC---CTTEE-EEEEEE-EEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEC------------CHHHHHHHHHcCCCcEEEEcCCCC---cccce-eeeecc-CcEE
Confidence 34566777777776 578888743 446788899999999998754321 22232 356777 7888
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 106 ~v~~~~ 111 (238)
T 2hxr_A 106 LVVAQH 111 (238)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 888865
No 78
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=83.81 E-value=6.2 Score=36.20 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=46.9
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-..++..+.++. +.++++... ....++..+.+|++|+++....... ....+ -+.+... ..++
T Consensus 105 ~~l~~~l~~f~~~~P~i~i~l~~~------------~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l-~~~~L~~-~~~~ 169 (305)
T 3fxq_A 105 AALPLALASFAREFPDVTVNVRDG------------MYPAVSPQLRDGTLDFALTAAHKHD-IDTDL-EAQPLYV-SDVV 169 (305)
T ss_dssp THHHHHHHHHHHHCTTCEEEEEEC------------CTTTTHHHHHHTSSSEEEEECCGGG-SCTTE-EEEEEEE-CCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC------------CHHHHHHHHHcCCCCEEEecCCCCC-CccCe-eEEEeec-CcEE
Confidence 34455677776666 678888743 3467889999999999997543221 11223 2466777 8889
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 170 ~v~~~~ 175 (305)
T 3fxq_A 170 IVGQRQ 175 (305)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 998865
No 79
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=82.36 E-value=0.85 Score=43.90 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=49.9
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhc
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTV 226 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~ 226 (444)
...+.||++.++++.| +++..|.+..+|++.+.++++|+++.+...|.+++.+..
T Consensus 162 ~~~s~y~~~~t~ttvG-------ygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 162 IPQAMWWAVVTLSTTG-------YGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHHHTTCC-------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheeecC-------CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999998 688899999999999999999999999999999988864
No 80
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=81.33 E-value=15 Score=33.71 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=27.0
Q ss_pred HHHHHHHH-cCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecc
Q psy12229 38 LIEEIRKL-VGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSL 88 (444)
Q Consensus 38 il~~la~~-lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~ 88 (444)
+.+.+.++ .+.++++... ++....+..+.+|++|+++...
T Consensus 39 la~~~~~~~~g~~v~v~~~-----------~~~~~~~~~l~~g~~Dl~~~~~ 79 (314)
T 1us5_A 39 IAKLVNDANVGIRANARST-----------GGSVANINAINAGEFEMALAQN 79 (314)
T ss_dssp HHHHHHHHTSSEEEEEECC-----------SCHHHHHHHHHTTSCSEEEEEH
T ss_pred HHHHHHhcCCCceEEEEec-----------CcHHHHHHHHHcCCCcEEEEcc
Confidence 44455544 5777777632 2346788999999999987654
No 81
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=80.79 E-value=9.7 Score=35.12 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=42.2
Q ss_pred HHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEEEEEe
Q psy12229 37 DLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMK 115 (444)
Q Consensus 37 dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ilvp 115 (444)
.++..+.++. +.++++... +...++.+|.+|++|+++...... ...+ -+.|... +.++++++
T Consensus 122 ~~l~~f~~~~P~v~l~l~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l-~~~~l~~-~~~~~v~~ 184 (315)
T 1uth_A 122 PLMEALAQRAPHIQISTLRP------------NAGNLKEDMESGAVDLALGLLPEL---QTGF-FQRRLFR-HRYVCMFR 184 (315)
T ss_dssp HHHHHHHHHCTTCEEEEECT------------TSSCHHHHHHHTSCCEEEECCTTC---CTTE-EEEEEEE-ECEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEeC------------CcccHHHHHHCCCCCEEEecCCCC---CCCc-eEEEeec-cceEEEEe
Confidence 4455566655 577777632 446788999999999999754321 1223 2456777 78888887
Q ss_pred CC
Q psy12229 116 KP 117 (444)
Q Consensus 116 ~~ 117 (444)
+.
T Consensus 185 ~~ 186 (315)
T 1uth_A 185 KD 186 (315)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 82
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=80.62 E-value=21 Score=32.92 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=47.6
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-..++..+.++. +.++++... +...+..++.+|++|+++...... ...+ -..+... ..++
T Consensus 103 ~~l~~~l~~f~~~~P~v~l~l~~~------------~~~~~~~~l~~g~~Dlai~~~~~~---~~~l-~~~~L~~-~~~~ 165 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIHIELIEC------------GTKDQINALKQGKIDLGFGRLKIT---DPAI-RRIMLHK-EQLK 165 (313)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEEEC------------CHHHHHHHHHHTSCSEEEESSCCC---CTTE-EEEEEEE-EEEE
T ss_pred hHHHHHHHHHHHHCCCeEEEEEeC------------ChHHHHHHHHcCCCCEEEEeCCCC---CCCe-eEEEeee-CcEE
Confidence 45667788888776 678888743 446788999999999998754322 1223 2456777 7888
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 166 ~v~~~~ 171 (313)
T 2h98_A 166 LAIHKH 171 (313)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 888765
No 83
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=80.47 E-value=1.2 Score=36.41 Aligned_cols=40 Identities=28% Similarity=0.726 Sum_probs=33.7
Q ss_pred CCCCcccccccccCCCCcccCCCCCCceeEeeeeeeccccCCCcccCC
Q psy12229 396 VDGTSVCSSIFDTDGKTKVSCPLKKDHVYRYINTFKILDRYPKCSKDL 443 (444)
Q Consensus 396 ~~~~~~~~~kw~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~ 443 (444)
+.+.|+|.. ...||...+..+.|..+.+|.+.||.+++++
T Consensus 68 ~~~~daC~~--------g~~CPl~~G~~~~y~~~lpV~~~~P~~~~~v 107 (130)
T 1nep_A 68 IPESDGCKS--------GIRCPIEKDKTYNYVNKLPVKNEYPSIKVVV 107 (130)
T ss_dssp CSCCBGGGT--------TCCSSBCTTCEEEEEEEEECCTTSCSSEEEE
T ss_pred CCCCCcccC--------CCcCcccCCcEEEEEEEeEecccCCCccEEE
Confidence 356899952 2499999999999999999999999988764
No 84
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=80.24 E-value=14 Score=33.84 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=47.2
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-.+++..+.++. +.++++... +...++.++.+|++|+++...... ...+ -+.+... ..++
T Consensus 103 ~~l~~~l~~f~~~~P~v~i~l~~~------------~~~~~~~~l~~g~~Dlai~~~~~~---~~~l-~~~~L~~-~~~~ 165 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHPNLRIELYEM------------GTKAQTEALKEGRIDAGFGRLKIS---DPAI-KHSLLRN-ERLM 165 (312)
T ss_dssp TTHHHHHHHHHHTCTTCEEEEEEC------------CHHHHHHHHHTTSCSEEEESSCCC---CTTE-EEEEEEE-EEEE
T ss_pred hhHHHHHHHHHHHCCCcEEEEEeC------------CHHHHHHHHHcCCCCEEEEeCCCC---CCCc-eEEEeec-ceEE
Confidence 45567777777776 577877743 456788999999999999754322 1223 2456777 7888
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 166 ~v~~~~ 171 (312)
T 2h9b_A 166 VAVHAS 171 (312)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 888765
No 85
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=79.74 E-value=1.9 Score=40.74 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=48.5
Q ss_pred cchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhc
Q psy12229 166 VIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTV 226 (444)
Q Consensus 166 ~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~ 226 (444)
..++||++.+++..| |++..|.+..+|++.+++.++++.+.....+.+...+..
T Consensus 117 ~~a~yf~~~t~tTvG-------YGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 117 GSAFFFSGTIITTIG-------YGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp HHHHHHHHHHHTSCC-------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhheeeeecc-------cCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999998 899999999999999999999999999999998888753
No 86
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=78.23 E-value=2.7 Score=42.75 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=48.7
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhc
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTV 226 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~ 226 (444)
...++|+.+.++++.| +++..|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 376 ~~~a~y~~~vT~TTvG-------YGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 376 IPDAFWWAVVSMTTVG-------YGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHHHHTTCC-------CSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhhhheeeeEEEecc-------cCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999888 688899999999999999999999999999988876654
No 87
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=77.41 E-value=15 Score=33.32 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=38.9
Q ss_pred CHHHHHHHHHhcCCCCCceEEEecc-cchhhhhcCCCccEEeCC-------cc-cccc-eEEEecCC-Cc-hhhhhHHHH
Q psy12229 316 SLEEAVQRVRDSKSSSEGFGYLGDA-TDIRYLVMTNCDLQMVGD-------EF-SRKP-YAIAVQQD-RD-ARELFCNVH 383 (444)
Q Consensus 316 ~~~e~~~~v~~~~~~~~~~a~i~d~-~~~~y~~~~~c~l~~~~~-------~~-~~~~-~~~~~~k~-sp-~~~~in~~i 383 (444)
+..+..+.+.+|+ .+|.+... ....+ .+.. +..+.. .. .+.+ .+++++++ .| ..+.|.+++
T Consensus 132 ~~~~~~~al~~G~----vDa~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~ 204 (280)
T 1zbm_A 132 PFDRIIQAVLDEE----VDAGLLIHEGQITY-ADYG--LKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAM 204 (280)
T ss_dssp CGGGHHHHHHTTS----SSEEEECSGGGGTG-GGGT--CEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC----CCEEEEechHHhHH-HhcC--CeEeccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHH
Confidence 5567888899997 77777553 34443 2222 222211 01 1123 36788888 44 777877777
Q ss_pred HHHhcCC
Q psy12229 384 ANILSIP 390 (444)
Q Consensus 384 l~l~e~G 390 (444)
.+..+.+
T Consensus 205 ~~a~~~~ 211 (280)
T 1zbm_A 205 RESIAFA 211 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 88
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=76.64 E-value=1.8 Score=35.23 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=32.5
Q ss_pred CCCcccccccccCCCCcccCCCCCCceeEeeeeeeccccCCCcc-cCC
Q psy12229 397 DGTSVCSSIFDTDGKTKVSCPLKKDHVYRYINTFKILDRYPKCS-KDL 443 (444)
Q Consensus 397 ~~~~~~~~kw~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 443 (444)
.+.|+|.. ..||...+..+.|..+.++.+.||.++ +++
T Consensus 68 ~~~daC~~---------~~CPl~~G~~~~y~~~~~v~~~~P~v~~~~v 106 (129)
T 1xwv_A 68 IDTNACHF---------MKCPLVKGQQYDAKYTWNVPKIAPKSENVVV 106 (129)
T ss_dssp CCCBGGGT---------SCSSBCTTCEEEEEEEEECCTTSCCBSCEEE
T ss_pred CCCCccCC---------ccCcccCCEEEEEEEEeEecccCCCCceEEE
Confidence 45899922 499999999999999999999999998 653
No 89
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=74.44 E-value=16 Score=32.95 Aligned_cols=68 Identities=4% Similarity=0.009 Sum_probs=46.4
Q ss_pred ecHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEE
Q psy12229 33 GYCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGIT 111 (444)
Q Consensus 33 G~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~ 111 (444)
.+-.+++..+.++. +.++++... +...++.++.+|++|+++...... ...+. +.+... ..++
T Consensus 104 ~~l~~~l~~f~~~~P~i~l~~~~~------------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~-~~~~ 166 (294)
T 1ixc_A 104 RSLPLLLRAFLTSTPTATVSLTHM------------TKDEQVEGLLAGTIHVGFSRFFPR---HPGIE-IVNIAQ-EDLY 166 (294)
T ss_dssp THHHHHHHHHHHHCTTEEEEEEEC------------CHHHHHHHHHHTSCSEEEESCCCC---CTTEE-EEEEEE-EEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeC------------CHHHHHHHHHCCCccEEEEecCCC---CCCce-EEEEee-ccEE
Confidence 45567777887776 567777632 345788999999999998754322 22332 456777 7888
Q ss_pred EEEeCC
Q psy12229 112 ILMKKP 117 (444)
Q Consensus 112 ilvp~~ 117 (444)
+++++.
T Consensus 167 ~v~~~~ 172 (294)
T 1ixc_A 167 LAVHRS 172 (294)
T ss_dssp EEEEGG
T ss_pred EEEeCC
Confidence 888765
No 90
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=74.38 E-value=2.3 Score=43.68 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=45.4
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhc-chhhhh
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTAN-LAAFLT 225 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~-L~s~Lt 225 (444)
...++||++.++++.| |++..|.+..+|++.++|.++++.+.+...+. ++++++
T Consensus 52 ~~~~~y~~~~t~tTvG-------ygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLG-------FGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp HHHHHHHHHHHHTTCC-------CCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeec-------CCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999 68888999999999999999998888777766 555443
No 91
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=74.08 E-value=5 Score=36.21 Aligned_cols=75 Identities=9% Similarity=-0.016 Sum_probs=54.7
Q ss_pred eecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccc---cccccccceecc
Q psy12229 32 KGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAEREN---VVDFTVPYYDLV 108 (444)
Q Consensus 32 ~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~---~~dfS~p~~~~~ 108 (444)
.|+.-+++..+.++.+.++++... ....++.++.+|.+|+++..-....+... ...-..++.. .
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~------------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~-n 84 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAV------------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMY-N 84 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEE------------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEE-C
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEc------------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEc-C
Confidence 467778999999999999988854 33568899999999999886654433211 1112457888 8
Q ss_pred cEEEEEeCCCC
Q psy12229 109 GITILMKKPKT 119 (444)
Q Consensus 109 ~~~ilvp~~~~ 119 (444)
.+++++|+..+
T Consensus 85 ~lVlV~P~~~P 95 (236)
T 3lr1_A 85 DFVIVGPKNDP 95 (236)
T ss_dssp CEEEEECTTCT
T ss_pred cEEEEEECCCh
Confidence 99999998754
No 92
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=73.23 E-value=0.48 Score=45.28 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=48.1
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccC
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRL 229 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~ 229 (444)
...++||++.++++.| +++..|.+..+|++.++|.++++.+.+...+.+.+.++....
T Consensus 46 ~~~a~y~~~~t~tTvG-------yGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVG-------YGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp SSTTHHHHHHHHTTCC-------CSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred HHHHHHHHHHHhhccc-------CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998 678889999999999999999999999999999998887644
No 93
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=72.46 E-value=9.1 Score=34.39 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=46.1
Q ss_pred HHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccc-ccccccccceecccEEEE
Q psy12229 36 IDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERE-NVVDFTVPYYDLVGITIL 113 (444)
Q Consensus 36 ~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~-~~~dfS~p~~~~~~~~il 113 (444)
-++++.+.++. +.++++... +...++..|.+|++|+++.......++. ..+. ..++.. +.++++
T Consensus 43 ~~~l~~f~~~~P~i~v~i~~~------------~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~-~~~~~v 108 (290)
T 1twy_A 43 DVLAEKYNQQHPETYVAVQGV------------GSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAF-DGLAIV 108 (290)
T ss_dssp HHHHHHHHHHCTTCEEEEEES------------CHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEE-EEEEEE
T ss_pred HHHHHHHHhhCCCceEEEEec------------CcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEe-eeEEEE
Confidence 34566666666 788888743 4567889999999999987654322111 2232 356777 788999
Q ss_pred EeCCC
Q psy12229 114 MKKPK 118 (444)
Q Consensus 114 vp~~~ 118 (444)
+++..
T Consensus 109 ~~~~~ 113 (290)
T 1twy_A 109 VNQAN 113 (290)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 98764
No 94
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=70.87 E-value=4.7 Score=37.40 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=48.5
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcc
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLTVS 227 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~ 227 (444)
...++||++.+++..| +++..|.+..+|++.+++.++++.+...+.+.+...+...
T Consensus 94 ~~~a~yf~~~t~tTvG-------yGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 94 FTSALFFASTVLSTTG-------YGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp HHHHHHHHHHHHTTCC-------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhheeeeeeccc-------cCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999998 7999999999999999999999999998888887766543
No 95
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=70.70 E-value=9.3 Score=32.89 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccc-ccEEeecccccccc---ccccc--ccccceec
Q psy12229 34 YCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR-ADIALGSLSVMAER---ENVVD--FTVPYYDL 107 (444)
Q Consensus 34 ~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~-~Di~~~~~~~t~~r---~~~~d--fS~p~~~~ 107 (444)
..-++++.+.++-|.++++... +...++..+.+|+ +|+++.+-....++ ...+. -..|+..
T Consensus 13 ~l~~~~~~F~~~p~i~v~~~~~------------~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVISSG------------SSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAI- 79 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEE------------CHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEE-
T ss_pred HHHHHHHHHHhccCCeEEEEEC------------CcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeee-
Confidence 3446777887778889888643 3467888888998 99987643221111 11111 2467888
Q ss_pred ccEEEEEeCCCC
Q psy12229 108 VGITILMKKPKT 119 (444)
Q Consensus 108 ~~~~ilvp~~~~ 119 (444)
+.+++++++...
T Consensus 80 ~~~vlv~~~~~~ 91 (231)
T 1atg_A 80 GKLVLWSAKPGL 91 (231)
T ss_dssp CCEEEEESSTTT
T ss_pred eeEEEEEcCCCC
Confidence 899999987654
No 96
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=66.46 E-value=7.9 Score=35.85 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHH---c---CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccc--ccccc-cc-c
Q psy12229 34 YCIDLIEEIRKL---V---GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERE--NVVDF-TV-P 103 (444)
Q Consensus 34 ~~~dil~~la~~---l---nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~--~~~df-S~-p 103 (444)
+.-++++.+.++ . +.++++... +...++.+|.+|++|+++..-....+.. ..+.+ .. +
T Consensus 34 ~lp~ll~~F~~~~~~~~~P~v~v~l~~~------------~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~ 101 (294)
T 3cvg_A 34 LVKELADAFIKSKVDSGSAPFKVAWYKS------------DTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYY 101 (294)
T ss_dssp HHHHHHHHHHHHHHSCC---CEEEEEEC------------CHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEE
T ss_pred HHHHHHHHHHhhhcccCCCCeEEEEEeC------------CHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeee
Confidence 455678888888 6 888888843 4578899999999999987543222111 11122 24 7
Q ss_pred ceecccEEEEEeCCCC
Q psy12229 104 YYDLVGITILMKKPKT 119 (444)
Q Consensus 104 ~~~~~~~~ilvp~~~~ 119 (444)
+.. +.+++++|+..+
T Consensus 102 l~~-d~lvlv~~~~hp 116 (294)
T 3cvg_A 102 AFR-DHFMLIGPPSNP 116 (294)
T ss_dssp EEE-EEEEEEECTTCT
T ss_pred EEe-ccEEEEecCCCh
Confidence 787 899999987643
No 97
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=66.17 E-value=8.7 Score=34.62 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=53.7
Q ss_pred eecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccccc---ccccccceecc
Q psy12229 32 KGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENV---VDFTVPYYDLV 108 (444)
Q Consensus 32 ~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~---~dfS~p~~~~~ 108 (444)
.|+.-+|+..+.++.+.++++... ....++.++.+|.+|+++.+-....+.... ..-..++.. .
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~------------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~-N 84 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA------------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMY-N 84 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE------------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEE-E
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc------------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEe-C
Confidence 467778999999999998888754 335678999999999998766543322111 112467877 8
Q ss_pred cEEEEEeCCCC
Q psy12229 109 GITILMKKPKT 119 (444)
Q Consensus 109 ~~~ilvp~~~~ 119 (444)
.+++++|+..+
T Consensus 85 ~lVlV~P~~~P 95 (237)
T 3muq_A 85 DFVIVGPKADP 95 (237)
T ss_dssp EEEEEECTTCT
T ss_pred CEEEEEeCCCh
Confidence 89999988753
No 98
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=65.00 E-value=3.4 Score=38.37 Aligned_cols=63 Identities=10% Similarity=0.146 Sum_probs=49.4
Q ss_pred ccchhhhhhhHhHhcccccccCCCCCCCCCChh-------hHHHHHHHHHHHHHHHHHhhhcchhhhhcccCCCCCC
Q psy12229 165 EVIRAIILMQNITDAGILFDDSFSGGEAPKNLS-------GRLVAATWWLFGFIIIASYTANLAAFLTVSRLDTPIE 234 (444)
Q Consensus 165 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s-------~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~~~I~ 234 (444)
...+.++++-++...| +++..|.+.. .|++...|+++++.+.+...+.+++.+........+.
T Consensus 202 ~~da~y~~~iTltTvG-------yGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~ 271 (280)
T 3ukm_A 202 FLESFYFCFISLSTIG-------LGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFY 271 (280)
T ss_dssp HHHHHHHHHHHHTTCC-------CCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC
T ss_pred hhhhhhheeeeeeccc-------CCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888999999988 4666676664 5999999999999999999999998887654444333
No 99
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=59.93 E-value=26 Score=33.34 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=51.6
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccC
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAPK--NLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRL 229 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~--~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~ 229 (444)
.....+||.+.+++..| |+...|. ...+|+++..-++.|+++.+.-+|-+.+-++.|..
T Consensus 91 sf~~af~fSv~T~TTvG-------YGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 91 GFVSAFLFSIETETTIG-------YGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp STTHHHHHHHHHHSCCC-------CSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHhhhheeeeeec-------CCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 35678899999999999 6777786 68899999999999999999999999999988754
No 100
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=58.54 E-value=66 Score=31.16 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHHHcCC-eEEEEEcCCCCCccccCCCccchhHHHHhccc----ccEEeec
Q psy12229 42 IRKLVGF-EYEIFVAPDNSFGNMDENGQWNGMIKELIEKR----ADIALGS 87 (444)
Q Consensus 42 la~~lnf-t~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~----~Di~~~~ 87 (444)
+.++.|+ +++++..+ +|..++..|..|+ +|++..+
T Consensus 56 ~~~~~Gl~~Ve~~~~~-----------~~~~~~~al~~G~~~~giD~a~~~ 95 (417)
T 2g29_A 56 FYAKYGMPDVEVLKQA-----------SWGTTRDNLVLGSASGGIDGAHIL 95 (417)
T ss_dssp HHHHTTCTTCEEEECS-----------CHHHHHHHHHHCGGGTSCSEEEEE
T ss_pred chHHcCCCeeEEEecC-----------CHHHHHHHHHCCCCcCCcCeEeec
Confidence 5566788 88888653 6889999999999 9998763
No 101
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=57.76 E-value=18 Score=34.48 Aligned_cols=64 Identities=14% Similarity=0.005 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccccccc-cc-cccee
Q psy12229 37 DLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVD-FT-VPYYD 106 (444)
Q Consensus 37 dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~d-fS-~p~~~ 106 (444)
.+.+.+.++.|-++++...+.+.. |+..+++++++.|.+|++..+......+...+. |+ .||..
T Consensus 54 ~fa~~v~e~t~G~v~i~v~~~g~L------g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~~ 119 (361)
T 2zzv_A 54 KFTERVKELTDGQLEVQPFPAGAV------VGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALGL 119 (361)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTSS------SCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTSC
T ss_pred HHHHHHHHhcCCeEEEEEeCCCcc------cCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCCc
Confidence 467778888887666665543222 356789999999999999887765555544443 32 66653
No 102
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=56.12 E-value=25 Score=31.85 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccc---cccccccccceeccc
Q psy12229 34 YCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAER---ENVVDFTVPYYDLVG 109 (444)
Q Consensus 34 ~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r---~~~~dfS~p~~~~~~ 109 (444)
+.-++++.+.++. +.++++... .....+.++.+|++|+++......... ...+ ...|+.. +.
T Consensus 17 ~l~~~~~~f~~~~P~v~i~v~~~------------~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~-d~ 82 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTFINVQGG------------GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAV-VG 82 (264)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEE------------CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEE-EE
T ss_pred HHHHHHHHHHHHCCCceEEEEeC------------CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEE-EE
Confidence 4445667777766 677777643 346789999999999998876554321 1122 3577888 89
Q ss_pred EEEEEeCCC
Q psy12229 110 ITILMKKPK 118 (444)
Q Consensus 110 ~~ilvp~~~ 118 (444)
+++++++..
T Consensus 83 lvvvv~~~~ 91 (264)
T 4ecf_A 83 ITPIVNKKV 91 (264)
T ss_dssp EEEEECTTS
T ss_pred EEEEEcCCC
Confidence 999998764
No 103
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=54.77 E-value=28 Score=31.64 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=51.9
Q ss_pred Cceeeeec--HHHHHHHHHHHc-----CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccccccc
Q psy12229 27 GGVKYKGY--CIDLIEEIRKLV-----GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVD 99 (444)
Q Consensus 27 ~~~~~~G~--~~dil~~la~~l-----nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~d 99 (444)
+.....|- ...+++++++.+ +.++++... |+ .+.+.++.+|.+|++.....+..+..+..-
T Consensus 37 ~~i~i~GSss~~p~~~~~a~~f~~~~p~v~v~~~~~-----------GS-g~g~~~~~~G~~di~~as~~~~~~e~~~~~ 104 (279)
T 4gd5_A 37 NSVSISGSTSVGPVMEAEAEAFKTKKPDVSIEINQI-----------GS-SAGIKNAMEGVSEIGMASRDLKGEEKQAGL 104 (279)
T ss_dssp CEEEEEECTTTHHHHHHHHHHHHHHSTTCEEEEEEC-----------CH-HHHHHHHHHTSSSEEEESSCCCHHHHTTCC
T ss_pred CeEEEEEeCcHHHHHHHHHHHHHHHCCCceEEEeeC-----------Cc-HHHHHHHHcCCCcEEEecchhhhhHhhcCc
Confidence 33444443 345555555543 667777632 33 567888999999999988877764433322
Q ss_pred ccccceecccEEEEEeCCCC
Q psy12229 100 FTVPYYDLVGITILMKKPKT 119 (444)
Q Consensus 100 fS~p~~~~~~~~ilvp~~~~ 119 (444)
-..|+.. +++++++++...
T Consensus 105 ~~~~ia~-d~~~vivn~~n~ 123 (279)
T 4gd5_A 105 KEVEIAY-DGIALITHKNNP 123 (279)
T ss_dssp EEEEEEE-EEEEEEEETTCS
T ss_pred eEEEEEe-eceeeeeccCCc
Confidence 3467777 899999997754
No 104
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=53.86 E-value=40 Score=29.05 Aligned_cols=66 Identities=12% Similarity=-0.009 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccccccccceecccEEE
Q psy12229 34 YCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITI 112 (444)
Q Consensus 34 ~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~dfS~p~~~~~~~~i 112 (444)
+-.+++..+.++. +.++++... +...+...|.+|++|+++...... .+ -+.+... ..+++
T Consensus 41 ~l~~~l~~f~~~~P~i~l~i~~~------------~~~~~~~~L~~g~~Dl~i~~~~~~-----~~-~~~~l~~-~~~~~ 101 (238)
T 3onm_A 41 LLPFLLNRVATLYPRLAIDVRVK------------RSPFIADMLSSGEVDLAITTAKVD-----SH-PHVILRT-SPTLW 101 (238)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEC------------CHHHHHHHHHHTSCSEEEECSCC------CC-CEEEEEE-ECEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEEEC------------CHHHHHHHHHCCCccEEEEecCCC-----Cc-ceEEeec-CCEEE
Confidence 3446666776665 678888743 456789999999999999755421 23 3566777 89999
Q ss_pred EEeCCC
Q psy12229 113 LMKKPK 118 (444)
Q Consensus 113 lvp~~~ 118 (444)
++++..
T Consensus 102 v~~~~~ 107 (238)
T 3onm_A 102 YCSVDY 107 (238)
T ss_dssp EEETTC
T ss_pred EEcCCC
Confidence 998764
No 105
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=51.92 E-value=26 Score=32.40 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccccccc-cccccee
Q psy12229 37 DLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVD-FTVPYYD 106 (444)
Q Consensus 37 dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~d-fS~p~~~ 106 (444)
.+.+.+.++.|-++++...+.+.-| +...++++++.|.+|++..+......+...+. ++.||..
T Consensus 22 ~fa~~v~e~s~G~i~i~~~~~g~Lg------~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~ 86 (301)
T 2pfy_A 22 QFADEVKAATAGALEIKVQSNSTLL------KRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLA 86 (301)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTSSS------CGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTTS
T ss_pred HHHHHHHHHcCCeEEEEEccchhhC------ChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCccc
Confidence 5677888888988888776643333 34678999999999999876654444333222 4556644
No 106
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=49.12 E-value=48 Score=29.95 Aligned_cols=71 Identities=8% Similarity=0.046 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccc---cccccccccccceeccc
Q psy12229 34 YCIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMA---ERENVVDFTVPYYDLVG 109 (444)
Q Consensus 34 ~~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~---~r~~~~dfS~p~~~~~~ 109 (444)
+.-.+++.+.++. +.++++... ...+.+.++.+|++|+++....... .....+ ...|+.. +.
T Consensus 17 ~~~~~~~~F~~~~P~v~i~v~~~------------gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~-d~ 82 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKTVNVQGG------------GSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAV-AG 82 (265)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEE------------CHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEE-EE
T ss_pred HHHHHHHHHHHHCCCceEEEeeC------------CcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEE-EE
Confidence 3344556666666 677777643 3467899999999999987543321 011122 2567888 89
Q ss_pred EEEEEeCCC
Q psy12229 110 ITILMKKPK 118 (444)
Q Consensus 110 ~~ilvp~~~ 118 (444)
+++++++..
T Consensus 83 lvvvv~~~~ 91 (265)
T 4exl_A 83 LALIVNKEV 91 (265)
T ss_dssp EEEEECTTC
T ss_pred EEEEECCCC
Confidence 999998764
No 107
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=48.33 E-value=28 Score=32.16 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccccccc-cccccee
Q psy12229 37 DLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVD-FTVPYYD 106 (444)
Q Consensus 37 dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~d-fS~p~~~ 106 (444)
.+.+.+.++.|-++++...+.+.- |+...++++++.|.+|++..+......+...+. ++.||..
T Consensus 21 ~fa~~v~~~s~G~i~i~~~~~g~L------g~~~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~ 85 (301)
T 2pfz_A 21 QFVKDVDSLSGGKLKITLHNNASL------YKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLA 85 (301)
T ss_dssp HHHHHHHHHHTTSCEEEEECTTSS------SCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSC
T ss_pred HHHHHHHHHcCCeEEEEEccCccc------CChHHHHHHHHCCceeeEechhhhccccCchhhhhcCCCCC
Confidence 567788888887777766554332 234688999999999999876654444333221 4556644
No 108
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=47.80 E-value=31 Score=32.26 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccccccc-cccccceecccEEE
Q psy12229 34 YCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVV-DFTVPYYDLVGITI 112 (444)
Q Consensus 34 ~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~~-dfS~p~~~~~~~~i 112 (444)
+.-++++.+.+.-+.++++... .....+.++.+|++|+++....+..+..... -...|+.. +.+++
T Consensus 15 ~l~~~~~~f~~~p~v~i~v~~~------------gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~-d~lvv 81 (321)
T 1ixh_A 15 VYAKWADTYQKETGNKVNYQGI------------GSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVI-GGVVL 81 (321)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEC------------CHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEE-EEEEE
T ss_pred HHHHHHHHHHhcCCceEEEecC------------CCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeee-eeEEE
Confidence 3444556666544777777632 3457899999999999998887776542110 13467888 89999
Q ss_pred EEeCCC
Q psy12229 113 LMKKPK 118 (444)
Q Consensus 113 lvp~~~ 118 (444)
+++++.
T Consensus 82 vv~~~~ 87 (321)
T 1ixh_A 82 AVNIPG 87 (321)
T ss_dssp EECCTT
T ss_pred EEeCCC
Confidence 998763
No 109
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=46.96 E-value=24 Score=31.80 Aligned_cols=73 Identities=11% Similarity=-0.034 Sum_probs=51.8
Q ss_pred eecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccccc---ccccccceecc
Q psy12229 32 KGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENV---VDFTVPYYDLV 108 (444)
Q Consensus 32 ~G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~---~dfS~p~~~~~ 108 (444)
.|+.-+|+..+.+..+.++++... ....++.++.+|.+|+.+..-....+.... ..-..++.. .
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~------------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~-N 84 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAV------------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMY-N 84 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEE------------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEEC-S
T ss_pred chHHHHHHHHHHHHhCCeEEEEEc------------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEc-c
Confidence 466778888999988999888854 335788899999999988765433322110 112356777 8
Q ss_pred cEEEEEeCC
Q psy12229 109 GITILMKKP 117 (444)
Q Consensus 109 ~~~ilvp~~ 117 (444)
.+++++|+.
T Consensus 85 ~LVLV~P~~ 93 (242)
T 3kn3_A 85 DFVIIGNPS 93 (242)
T ss_dssp CEEEEECTH
T ss_pred eEEEEEeCC
Confidence 899999876
No 110
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=46.78 E-value=41 Score=32.00 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=51.0
Q ss_pred cccchhhhhhhHhHhcccccccCCCCCCCC--CChhhHHHHHHHHHHHHHHHHHhhhcchhhhhcccCC
Q psy12229 164 PEVIRAIILMQNITDAGILFDDSFSGGEAP--KNLSGRLVAATWWLFGFIIIASYTANLAAFLTVSRLD 230 (444)
Q Consensus 164 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p--~~~s~Rl~~~~w~l~~lvl~~~Y~a~L~s~Lt~~~~~ 230 (444)
.....++|.+.+++..| |+...| .+..+++++..-.+.|+++.+.-.|-+.+-++.|...
T Consensus 94 sf~~af~fSv~T~TTvG-------YGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIG-------YGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp SHHHHHHHHHHHHSCCC-------CSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CHHHHhheeeeeeEeec-------CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 34678889999999999 566554 5789999999999999999999999999999988543
No 111
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=44.53 E-value=18 Score=33.95 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=42.6
Q ss_pred cchhhhhhhHhHhcccccccCCCCCCCCCChhhH------HHHHHHHHHHHHHHHHhhhcchhhhhc
Q psy12229 166 VIRAIILMQNITDAGILFDDSFSGGEAPKNLSGR------LVAATWWLFGFIIIASYTANLAAFLTV 226 (444)
Q Consensus 166 ~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~s~R------l~~~~w~l~~lvl~~~Y~a~L~s~Lt~ 226 (444)
..+.|+++-++...| +++..|.+..+| ++.+.|+++++.+.++..+.+...+..
T Consensus 226 ~da~y~~~vTltTvG-------yGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 226 LEAIYFVIVTLTTVG-------FGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp HHHHHHHHHHHTTCC-------CSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhheeccc-------cCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888 567777777666 699999999999988888777776654
No 112
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=40.70 E-value=41 Score=30.64 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCceeeeecH--HHHHHHHHHHc-----CCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccccccccc
Q psy12229 25 GGGGVKYKGYC--IDLIEEIRKLV-----GFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENV 97 (444)
Q Consensus 25 ~~~~~~~~G~~--~dil~~la~~l-----nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~ 97 (444)
.+|.....|-. .-+++.+++.+ |.++++.. .|+- +-+.++..|++||+.....++.+..+.
T Consensus 154 ~~g~i~i~GSst~~p~~~~~ae~f~~~~p~~~v~~~~-----------~GSg-~G~~~~~~g~~di~~ssr~l~~~e~~~ 221 (265)
T 4h1x_A 154 LSGKLSVVGSTSVSSLMEKLAEAYKKENPEVTIDITS-----------NGSS-AGITAVKEKTADIGMVSRELTPEEGKS 221 (265)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHHHHHCTEEEEEEEE-----------SCHH-HHHHHHHHTSCSEEEESSCCCHHHHTT
T ss_pred ccceeEEecCcchHHHHHHHHHHHHhhCCCceeeEec-----------CCcH-HHHHHHHcCCCceeeccccCChHHHcC
Confidence 35555666543 45566666665 34555542 3443 457888999999999999888765444
Q ss_pred ccccccceecccEEEEEeCCCCC
Q psy12229 98 VDFTVPYYDLVGITILMKKPKTP 120 (444)
Q Consensus 98 ~dfS~p~~~~~~~~ilvp~~~~~ 120 (444)
+ ...|+.. ++++++|.+....
T Consensus 222 ~-~~~~va~-d~iavvvn~~n~~ 242 (265)
T 4h1x_A 222 L-THDAIAL-DGIAVVVNNDNKA 242 (265)
T ss_dssp C-EEEEEEE-EEEEEEECTTCCC
T ss_pred C-eEeeEEE-EeEEEEECCCCCc
Confidence 3 2467777 8999999877543
No 113
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=37.20 E-value=37 Score=32.27 Aligned_cols=52 Identities=8% Similarity=-0.069 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccc
Q psy12229 37 DLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAER 94 (444)
Q Consensus 37 dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r 94 (444)
.+.+.+.++.|-++++...+.+.. |+...++++++.|.+|++..+......+
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~L------g~~~~~~eav~~G~iD~~~~~~~~~~~~ 104 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGEL------VPGLQAADAVTEGTVECCHTVGYYYWGK 104 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTTS------SCGGGHHHHHHTTSSSEEEECGGGGTTT
T ss_pred HHHHHHHHhcCCeEEEEEecCCcc------cCHHHHHHHHHcCccceeecchhhhccc
Confidence 467778888886666655443222 3457899999999999998766544443
No 114
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=36.80 E-value=45 Score=29.91 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccc-ccEEeeccccccccc---cccc--ccccceeccc
Q psy12229 36 IDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR-ADIALGSLSVMAERE---NVVD--FTVPYYDLVG 109 (444)
Q Consensus 36 ~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~-~Di~~~~~~~t~~r~---~~~d--fS~p~~~~~~ 109 (444)
-++++.+.++.|.++++... +...++..+.+|. +|+.++.-.-..++. ..++ -..++.. ..
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~~------------~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~-~~ 104 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSYA------------ASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLG-NT 104 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEEE------------CHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEE-EC
T ss_pred HHHHHHHHHHhCCeEEEEEC------------ChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEe-eE
Confidence 46778888888999888643 3356778888776 999887542211111 1221 2345667 78
Q ss_pred EEEEEeCCC
Q psy12229 110 ITILMKKPK 118 (444)
Q Consensus 110 ~~ilvp~~~ 118 (444)
+++++++..
T Consensus 105 lvl~~~~~~ 113 (253)
T 3gzg_A 105 LVLVAPASS 113 (253)
T ss_dssp EEEEEETTC
T ss_pred EEEEEECCC
Confidence 999999874
No 115
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=36.36 E-value=35 Score=32.37 Aligned_cols=49 Identities=6% Similarity=-0.000 Sum_probs=36.9
Q ss_pred ccchhHHHHhcccccEEeeccccccccccc---ccccccceecccEEEEEeCCC
Q psy12229 68 QWNGMIKELIEKRADIALGSLSVMAERENV---VDFTVPYYDLVGITILMKKPK 118 (444)
Q Consensus 68 ~~~g~i~~l~~g~~Di~~~~~~~t~~r~~~---~dfS~p~~~~~~~~ilvp~~~ 118 (444)
...+.+.++.+|++|+++....+..+.... + ...|+.. +.++++++++.
T Consensus 63 gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l-~~~pi~~-d~lvvvvn~~~ 114 (350)
T 1pc3_A 63 GSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGL-MNIALAI-SAQQVNYNLPG 114 (350)
T ss_dssp CHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTE-EEEEEEE-EEEEEEECCTT
T ss_pred CCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCC-EEeeEEe-eeEEEEEeCCc
Confidence 345779999999999999988877654221 2 3567888 89999998764
No 116
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=34.07 E-value=98 Score=28.14 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccc-cc----c-cccccccccceecc
Q psy12229 35 CIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVM-AE----R-ENVVDFTVPYYDLV 108 (444)
Q Consensus 35 ~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t-~~----r-~~~~dfS~p~~~~~ 108 (444)
..+|++.+-+.+++++++... +-..+..+|.+|++|+........ .+ . ...+..-.|...-.
T Consensus 31 ~~~i~~~~Le~~G~~Ve~~~~------------~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~ 98 (280)
T 3tmg_A 31 ATNVLKVVFEKMGYNAEIFSV------------TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLGANYEGT 98 (280)
T ss_dssp HHHHHHHHHHHTTEEEEEEEC------------CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCceEEEEC------------CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEccccCCCc
Confidence 456777777778999998642 234678899999999987644322 10 0 11222333333314
Q ss_pred cEEEEEeCCCCCCccc
Q psy12229 109 GITILMKKPKTPTSLF 124 (444)
Q Consensus 109 ~~~ilvp~~~~~~~~~ 124 (444)
...++||+...+.++.
T Consensus 99 ~~~l~V~~~~~i~sis 114 (280)
T 3tmg_A 99 IQGFVVPSYVPISSIS 114 (280)
T ss_dssp EEEEEEETTSCCCBGG
T ss_pred eEEEEECCCCCCCCHH
Confidence 6889999875444433
No 117
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=33.59 E-value=58 Score=28.62 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=47.2
Q ss_pred ecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhccc-ccEEeeccccccccc---cccc--cccccee
Q psy12229 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKR-ADIALGSLSVMAERE---NVVD--FTVPYYD 106 (444)
Q Consensus 33 G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~-~Di~~~~~~~t~~r~---~~~d--fS~p~~~ 106 (444)
...-++++.+.+.-|.++++... +...++..+.+|. +|+.++.-.-..++. ..+. -..+|..
T Consensus 19 ~~~~~l~~~Fe~~~gi~V~~~~~------------~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~ 86 (237)
T 3r26_A 19 NAMQDIATQFKKEKGVDVVSSFA------------SSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLG 86 (237)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEE------------CHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEE
T ss_pred HHHHHHHHHHHhccCCeEEEEEC------------CHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEc
Confidence 33457788888888999888643 3346777887776 999887532111111 1221 2357777
Q ss_pred cccEEEEEeCCC
Q psy12229 107 LVGITILMKKPK 118 (444)
Q Consensus 107 ~~~~~ilvp~~~ 118 (444)
..+++++++..
T Consensus 87 -~~lvl~~~~~~ 97 (237)
T 3r26_A 87 -NSLVVVAPKAS 97 (237)
T ss_dssp -ECEEEEEESSC
T ss_pred -ceEEEEEeCCC
Confidence 89999999864
No 118
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=33.25 E-value=1.1e+02 Score=27.42 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=49.8
Q ss_pred ecHHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeeccccc--ccc----ccccccccccee
Q psy12229 33 GYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVM--AER----ENVVDFTVPYYD 106 (444)
Q Consensus 33 G~~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t--~~r----~~~~dfS~p~~~ 106 (444)
-+..+|++.+-+..+++++.... +-.-+..+|.+|++|+........ ..- ...+..-.|...
T Consensus 15 ~i~~~i~~~~Le~~G~~Ve~~~~------------~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~ 82 (256)
T 3l6g_A 15 VASINVLTQAMKEHGFDVKTTAL------------DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLK 82 (256)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEC------------CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEC------------ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEccccCC
Confidence 35667788888888999998732 334678999999999977654322 110 011223334332
Q ss_pred cccEEEEEeCCCCCCcccc
Q psy12229 107 LVGITILMKKPKTPTSLFK 125 (444)
Q Consensus 107 ~~~~~ilvp~~~~~~~~~~ 125 (444)
.....++||+...+.++.-
T Consensus 83 ~~~~~l~Vp~~~~i~si~D 101 (256)
T 3l6g_A 83 GAKVGFVVPSYMNVNSIED 101 (256)
T ss_dssp EEEEEEEEETTSCCCBGGG
T ss_pred CceEEEEECCccCCCCHHH
Confidence 1578999998754444333
No 119
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=23.48 E-value=1.3e+02 Score=27.84 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccc
Q psy12229 37 DLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSV 90 (444)
Q Consensus 37 dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~ 90 (444)
.+.+.+.++.|-++++...+.+..| +...++++++.|.+|++..+...
T Consensus 23 ~fa~~v~e~s~G~i~i~v~~~g~Lg------~~~~~~e~v~~G~id~~~~~~~~ 70 (312)
T 2xwv_A 23 MFAKEVKEKSQGKIEISLYPSSQLG------DDRAMLKQLKDGSLDFTFAESAR 70 (312)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTTTC------CHHHHHHHHHHTSCCEEEECGGG
T ss_pred HHHHHHHHHcCCcEEEEEecCCCCC------CHHHHHHHHHCCCceEEEeCchh
Confidence 4667788888888877766543333 34688999999999998776543
No 120
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=23.40 E-value=1.1e+02 Score=26.39 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEeecccccccc--cc---ccc--ccccceec
Q psy12229 35 CIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAER--EN---VVD--FTVPYYDL 107 (444)
Q Consensus 35 ~~dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~~~~~t~~r--~~---~~d--fS~p~~~~ 107 (444)
.-++++.+.++.|.++++... +...++..+. +.+|+++.+-....++ .. .++ -..++..
T Consensus 15 ~~~~~~~F~~~~gi~V~~~~~------------~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 80 (237)
T 2hxw_A 15 LKDIANKYSEKTGVKVNVNFG------------PQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYF- 80 (237)
T ss_dssp HHHHHHHHHHHHCCCEEEEES------------SHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEE-
T ss_pred HHHHHHHHHHHhCceEEEEeC------------ChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCccccccccc-
Confidence 346788888888999888532 3356677777 8999988766321111 11 232 2345666
Q ss_pred ccEEEEEeCCC
Q psy12229 108 VGITILMKKPK 118 (444)
Q Consensus 108 ~~~~ilvp~~~ 118 (444)
..+++++++..
T Consensus 81 ~~~~l~~~~~~ 91 (237)
T 2hxw_A 81 REAIILTQKGN 91 (237)
T ss_dssp EEEEEEESTTC
T ss_pred CceEEEEeCCC
Confidence 78888887663
No 121
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=22.96 E-value=1.4e+02 Score=26.84 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHc-CCeEEEEEcCCCCCccccCCCccchhHHHHhc-cc-ccEEeecccccccc---cccccccccceecc
Q psy12229 35 CIDLIEEIRKLV-GFEYEIFVAPDNSFGNMDENGQWNGMIKELIE-KR-ADIALGSLSVMAER---ENVVDFTVPYYDLV 108 (444)
Q Consensus 35 ~~dil~~la~~l-nft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~-g~-~Di~~~~~~~t~~r---~~~~dfS~p~~~~~ 108 (444)
.-++++.+.++. |.++++... +...++..+.. |. +|+.+..-.....+ ...++...||.. .
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~~------------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~-~ 85 (295)
T 3cij_A 19 MKAFKRAFEEKHPNVEVQTEAA------------GSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAK-N 85 (295)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEE------------CHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEE-C
T ss_pred HHHHHHHHHHHCCCceEEEEeC------------cHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEe-e
Confidence 346778888884 889888643 33457777877 64 99988643221111 122345678888 8
Q ss_pred cEEEEEeCCC
Q psy12229 109 GITILMKKPK 118 (444)
Q Consensus 109 ~~~ilvp~~~ 118 (444)
.+++++++..
T Consensus 86 ~lvl~~~~~~ 95 (295)
T 3cij_A 86 QIVLAYRNDS 95 (295)
T ss_dssp CEEEEECTTS
T ss_pred eEEEEEeCCC
Confidence 9999998764
No 122
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=22.68 E-value=1.7e+02 Score=26.28 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=46.4
Q ss_pred HHHHHHHHHHH-cCCeEEEEEcCCCCCccccCCCccchhHHHHhc-cc-ccEEeecccccccc---cccccccccceecc
Q psy12229 35 CIDLIEEIRKL-VGFEYEIFVAPDNSFGNMDENGQWNGMIKELIE-KR-ADIALGSLSVMAER---ENVVDFTVPYYDLV 108 (444)
Q Consensus 35 ~~dil~~la~~-lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~-g~-~Di~~~~~~~t~~r---~~~~dfS~p~~~~~ 108 (444)
.-++++.+.++ -|.++++... +...++..+.+ |. +|+.+..-....++ ...++...||.. .
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~~------------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~-~ 85 (296)
T 3cfx_A 19 FEELEAEFEAQHPGVDVQREAA------------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFAR-N 85 (296)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEC------------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEE-C
T ss_pred HHHHHHHHHHHCCCceEEEEeC------------chHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEe-e
Confidence 34678888888 4899888642 33567777877 64 99988653221111 122345677877 8
Q ss_pred cEEEEEeCCC
Q psy12229 109 GITILMKKPK 118 (444)
Q Consensus 109 ~~~ilvp~~~ 118 (444)
.+++++++..
T Consensus 86 ~l~i~~~~~~ 95 (296)
T 3cfx_A 86 QMILAYTNES 95 (296)
T ss_dssp CEEEEECTTS
T ss_pred eEEEEEeCCC
Confidence 8999998764
No 123
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=22.40 E-value=92 Score=24.78 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCeEEEEEcCCCCCccccCCCccchhHHHHhcccccEEee
Q psy12229 37 DLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALG 86 (444)
Q Consensus 37 dil~~la~~lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~g~~Di~~~ 86 (444)
+.++..|+..|+.+.-+....+.-|.......+..++.++..|++|.++-
T Consensus 28 ~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv 77 (138)
T 3bvp_A 28 DRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLV 77 (138)
T ss_dssp HHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEE
Confidence 34778888889886444333333343333446788999999999997654
No 124
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=22.36 E-value=1.5e+02 Score=26.66 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHH-cCCeEEEEEcCCCCCccccCCCccchhHHHHhc-cc-ccEEeecccccccc---cccccccccceec
Q psy12229 34 YCIDLIEEIRKL-VGFEYEIFVAPDNSFGNMDENGQWNGMIKELIE-KR-ADIALGSLSVMAER---ENVVDFTVPYYDL 107 (444)
Q Consensus 34 ~~~dil~~la~~-lnft~~~~~~~~~~~g~~~~ng~~~g~i~~l~~-g~-~Di~~~~~~~t~~r---~~~~dfS~p~~~~ 107 (444)
..-++++.+.++ -|.++++... +...++..+.+ |. +|+.+..-....++ ...++...||..
T Consensus 18 ~~~~l~~~F~~~~~gi~V~~~~~------------~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~- 84 (292)
T 3cfz_A 18 PFEEYEKMFEKEHPNVDVEREPA------------GSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFAR- 84 (292)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE------------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEE-
T ss_pred HHHHHHHHHHHHCCCceEEEEeC------------CHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEe-
Confidence 344677888777 4888887633 33567778877 64 99988653221222 122345677877
Q ss_pred ccEEEEEeCCC
Q psy12229 108 VGITILMKKPK 118 (444)
Q Consensus 108 ~~~~ilvp~~~ 118 (444)
..+++++++..
T Consensus 85 ~~lvi~~~~~~ 95 (292)
T 3cfz_A 85 NEIVLAYTDKS 95 (292)
T ss_dssp CCEEEEECTTS
T ss_pred ccEEEEEcCCC
Confidence 88999998763
Done!