RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12229
(444 letters)
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
10116]}
Length = 277
Score = 73.9 bits (180), Expect = 2e-15
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 28/153 (18%)
Query: 12 LKQEPFVMREESEGGGGV--------------------------KYKGYCIDLIEEIRKL 45
L++ PFV+ E+ + KG+CID+++++ +
Sbjct: 8 LEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRT 67
Query: 46 VGFEYEIFVAPDNSFGNMDENGQWNGMIKELIEKRADIALGSLSVMAERENVVDFTVPYY 105
V F Y++++ + G N WNGMI E++ +RA +A+GSL++ ER VVDF+VP+
Sbjct: 68 VKFTYDLYLVTNGKHGKKV-NNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFV 126
Query: 106 DLVGITILMKKPKTPTSLFKFLTVLETGVWLCI 138
+ GI++++ + T S KF +
Sbjct: 127 E-TGISVMVSRQVTGLSDKKFQRPHDYSPPFRF 158
Score = 30.0 bits (66), Expect = 0.58
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 4/112 (3%)
Query: 272 IWKDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQRVRDSKSSS 331
D + +++ + + + V+ S +
Sbjct: 140 GLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTG 199
Query: 332 EGFGYLGDATDIRYLVMTNCDLQMV----GDEFSRKPYAIAVQQDRDARELF 379
+ ++ DA + Y + ++V G F+ Y IA+Q+ +
Sbjct: 200 KLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQI 251
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
(Rattus norvegicus), GluR2 [TaxId: 10116]}
Length = 260
Score = 72.7 bits (177), Expect = 4e-15
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMD-ENGQWN 70
+ P+VM +++ G +Y+GYC+DL EI K GF+Y++ + D +G D + WN
Sbjct: 11 ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 70
Query: 71 GMIKELIEKRADIALGSLSVMAERENVVDFTVPYYD 106
GM+ EL+ +ADIA+ L++ RE V+DF+ P+
Sbjct: 71 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMS 106
Score = 36.9 bits (84), Expect = 0.003
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 4/144 (2%)
Query: 237 DDLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERAKLAVWDYP 296
+ ++ ++ + +++ S +
Sbjct: 92 LVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIA 151
Query: 297 VSDKYTKMWQAMKEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTN-CDLQM 355
V DK ++ + + + E V RVR SK + YL ++T Y+ CD
Sbjct: 152 VFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK---YAYLLESTMNEYIEQRKPCDTMK 208
Query: 356 VGDEFSRKPYAIAVQQDRDARELF 379
VG K Y IA +
Sbjct: 209 VGGNLDSKGYGIATPKGSSLGNAV 232
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 289
Score = 67.0 bits (162), Expect = 6e-13
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 30 KYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMD-----ENGQWNGMIKELIEKRADIA 84
G+CIDL+ ++ + + F YE+ + D FG + +WNGM+ EL+ +AD+
Sbjct: 59 CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMI 118
Query: 85 LGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTS 122
+ L++ ER ++F+ P+ G+TIL+KK T
Sbjct: 119 VAPLTINNERAQYIEFSKPFKY-QGLTILVKKGTRITG 155
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 300 KYTKMWQAMKEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTNCDLQMVGDE 359
+ + M++ M++ ++ EA+Q VRD+K ++ D+ + + CDL G+
Sbjct: 187 ELSTMYRHMEKHNYESA-AEAIQAVRDNKL----HAFIWDSAVLEFEASQKCDLVTTGEL 241
Query: 360 FSRKPYAIAVQQDRDARELF 379
F R + I +++D ++
Sbjct: 242 FFRSGFGIGMRKDSPWKQNV 261
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 64.8 bits (156), Expect = 2e-12
Identities = 38/95 (40%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Query: 14 QEPFVMREESEGG--GGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNG 71
+EP+VM +S+ G +++GYC+DL++E+ ++GF Y++ + PD +G ++ G+WNG
Sbjct: 9 EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNG 68
Query: 72 MIKELIEKRADIALGSLSVMAERENVVDFTVPYYD 106
M+KELI+ RAD+A+ L++ RE V+DF+ P+
Sbjct: 69 MVKELIDHRADLAVAPLTITYVREKVIDFSKPFMT 103
Score = 35.2 bits (79), Expect = 0.010
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 293 WDYPVSDKYTKMWQAMKEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLVMTNCD 352
+K + +++ L + +E +QRV + + L ++T I Y+ NC+
Sbjct: 143 SKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTD-----YALLMESTSIEYVTQRNCN 197
Query: 353 LQMVGDEFSRKPYAIAVQQDRDARELF 379
L +G K Y + R+
Sbjct: 198 LTQIGGLIDSKGYGVGTPIGSPYRDKI 224
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite
(Dermatophagoides farinae), Der f 2 [TaxId: 6954]}
Length = 129
Score = 51.0 bits (122), Expect = 1e-08
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 12/99 (12%)
Query: 342 DIRYLVMTNCDLQMVGDEFSRKPYAIAVQ--QDRDARELFCNVHANILSIPFPFIGVDGT 399
+I+ +++ C KP+ + +++ + + A++ + G+D
Sbjct: 12 EIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGID-- 69
Query: 400 SVCSSIFDTDGKTKVSCPLKKDHVYRYINTFKILDRYPK 438
T+ + CPL K Y T+ + PK
Sbjct: 70 --------TNACHFMKCPLVKGQQYDAKYTWNVPKIAPK 100
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 223
Score = 42.7 bits (99), Expect = 3e-05
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 19/146 (13%)
Query: 16 PFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKE 75
PF ++ G Y G+ +DL I K + +YE+ + ++G+I
Sbjct: 12 PFEFKQ------GDLYVGFDVDLWAAIAKELKLDYEL------------KPMDFSGIIPA 53
Query: 76 LIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVW 135
L K D+AL +++ ER+ +DF+ YY G+ +++K K L V
Sbjct: 54 LQTKNVDLALAGITITDERKKAIDFSDGYYK-SGLLVMVKANNNDVKSVKDLDGKVVAVK 112
Query: 136 LCILAAYCNLDGEQMKYLIQVNPPGD 161
+ + K L Q +
Sbjct: 113 SGTGSVDYAKANIKTKDLRQFPNIDN 138
Score = 26.1 bits (56), Expect = 7.6
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 274 KDMSLNDSLSDVERAKLAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQRVRDSKSSSEG 333
+ + S+ D++ +AV S Y K K+ + +++ A + +++ +
Sbjct: 93 ANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVL 152
Query: 334 FGYLGDATDIRYLVMTNCDLQMVGDEFSRKPYAIAVQQDRDA 375
I+ N + VGD + Y IA + D
Sbjct: 153 HDTPNILYFIKT--AGNGQFKAVGDSLEAQQYGIAFPKGSDE 192
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick
C2 protein) {Cow (Bos taurus) [TaxId: 9913]}
Length = 130
Score = 38.4 bits (89), Expect = 3e-04
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 372 DRDARELFCNVHANILSIPFPFIGVDGTSVCSSIFDTDGKTKVSCPLKKDHVYRYINTFK 431
+ ++ VH ++ IP PF + K+ + CP++KD Y Y+N
Sbjct: 45 NTQSQSSKAVVHGIVMGIPVPFPIPE---------SDGCKSGIRCPIEKDKTYNYVNKLP 95
Query: 432 ILDRYPK 438
+ + YP
Sbjct: 96 VKNEYPS 102
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 36.7 bits (83), Expect = 0.003
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 16 PFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGM 72
PFV E + + G +D+ + + + E S G +
Sbjct: 15 PFVFYGEGKNA---AFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDI 68
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO)
protein {Salmonella typhimurium [TaxId: 90371]}
Length = 238
Score = 32.3 bits (72), Expect = 0.078
Identities = 32/203 (15%), Positives = 61/203 (30%), Gaps = 22/203 (10%)
Query: 16 PFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKE 75
PF ++ ++ G+ IDL E+ K + + ++ +I
Sbjct: 16 PFSSKDAKG-----EFIGFDIDLGNEMCKRMQVKCTWV------------ASDFDALIPS 58
Query: 76 LIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKPKTPTSLFKFLTVLETGVW 135
L K+ D + SLS+ +R+ + F+ Y I K +L +
Sbjct: 59 LKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQ 118
Query: 136 LCILAAYCNLDGEQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFSGGEAPKN 195
AY N + + D++ L DA + + + S G +
Sbjct: 119 GSTQEAYANDNWRTKGVDVVAYANQDLIYSD-----LTAGRLDAALQDEVAASEGFLKQP 173
Query: 196 LSGRLVAATWWLFGFIIIASYTA 218
A + T
Sbjct: 174 AGKEYAFAGPSVKDKKYFGDGTG 196
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 29.5 bits (66), Expect = 0.25
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 189 GGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFLT 225
G P L GR VA + G TA LA +
Sbjct: 58 GDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFV 94
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 28.5 bits (64), Expect = 0.34
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 189 GGEAPKNLSGRLVAATWWLFGFIIIASYTANLAAFL 224
G +P G T + G A L FL
Sbjct: 45 GDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 368
Score = 27.1 bits (59), Expect = 4.3
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 312 KLPNSLEEAVQRVRDSKSSSEGFGYLGD 339
++ SLEEA+ + + + G D
Sbjct: 309 QVAGSLEEALNALDLDREFLKAGGVFTD 336
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 25.7 bits (55), Expect = 7.8
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 238 DLSKQYKIQYAPLNGSAAMTYFQRMADIEGRFYEIWKDMSLNDSLSDVERA 288
+ + PL+GS + ++ + +I ++S+ND+ +V
Sbjct: 100 EFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEV 150
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
{Campylobacter jejuni [TaxId: 197]}
Length = 248
Score = 26.2 bits (56), Expect = 8.2
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 14/102 (13%)
Query: 16 PFVMREESEGGGGVKYKGYCIDLIEEIRKLVGFEYEIFVAPDNSFGNMDENGQWNGMIKE 75
PF +E +GY I L + I K + + N E + N +
Sbjct: 23 PFGYVDEKG-----NNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDII 77
Query: 76 LIEKRADIALGSLSVMAERENVVDFTVPYYDLVGITILMKKP 117
L +R VDF PY + + K
Sbjct: 78 LANFTQTP---------QRAEQVDFCSPYMKVALGVAVPKDS 110
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement
receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 26.0 bits (56), Expect = 9.6
Identities = 5/58 (8%), Positives = 15/58 (25%)
Query: 290 LAVWDYPVSDKYTKMWQAMKEAKLPNSLEEAVQRVRDSKSSSEGFGYLGDATDIRYLV 347
+ Y + + + K +++ + + S F +L
Sbjct: 29 VIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLT 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,719,142
Number of extensions: 82430
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 25
Length of query: 444
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,199,356
Effective search space: 426970736
Effective search space used: 426970736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)