Query psy12232
Match_columns 202
No_of_seqs 214 out of 879
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 22:10:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0196|consensus 99.4 3.6E-13 7.8E-18 133.0 6.4 104 2-117 862-970 (996)
2 cd06383 PBP1_iGluR_AMPA_Like N 98.7 2.7E-08 6E-13 90.4 7.0 116 86-201 106-223 (368)
3 KOG4278|consensus 98.0 3.6E-06 7.7E-11 83.2 3.6 35 2-36 494-528 (1157)
4 KOG0200|consensus 98.0 6.1E-06 1.3E-10 80.0 4.3 47 2-55 550-596 (609)
5 KOG1095|consensus 97.8 2.4E-05 5.2E-10 80.3 4.9 46 2-51 932-977 (1025)
6 KOG4257|consensus 97.6 4.6E-05 1E-09 75.4 3.7 33 2-34 620-652 (974)
7 KOG1025|consensus 97.2 0.0003 6.6E-09 71.4 4.5 37 1-37 927-963 (1177)
8 cd05108 PTKc_EGFR Catalytic do 97.0 0.0005 1.1E-08 59.3 3.2 36 2-37 239-274 (316)
9 KOG0192|consensus 97.0 0.00064 1.4E-08 62.6 4.0 35 2-36 274-308 (362)
10 KOG0199|consensus 96.9 0.00055 1.2E-08 68.7 2.5 28 2-29 343-370 (1039)
11 cd05100 PTKc_FGFR3 Catalytic d 96.8 0.0017 3.6E-08 56.6 5.0 52 2-57 264-315 (334)
12 cd06351 PBP1_iGluR_N_LIVBP_lik 96.4 0.011 2.3E-07 50.5 6.9 115 86-201 105-224 (328)
13 cd05110 PTKc_HER4 Catalytic do 96.4 0.0042 9E-08 53.3 4.4 36 2-37 239-274 (303)
14 cd06393 PBP1_iGluR_Kainate_Glu 96.4 0.015 3.3E-07 52.4 8.0 113 87-200 113-229 (384)
15 cd06387 PBP1_iGluR_AMPA_GluR3 96.3 0.022 4.8E-07 52.4 8.7 113 85-201 99-217 (372)
16 cd06390 PBP1_iGluR_AMPA_GluR1 95.5 0.077 1.7E-06 48.4 8.6 111 85-200 92-208 (364)
17 PF01094 ANF_receptor: Recepto 95.5 0.033 7.1E-07 47.7 5.8 114 86-200 94-216 (348)
18 cd06392 PBP1_iGluR_delta_1 N-t 95.3 0.055 1.2E-06 50.5 7.0 114 85-201 111-237 (400)
19 KOG4721|consensus 95.1 0.014 3.1E-07 57.9 2.6 27 3-29 340-366 (904)
20 cd06389 PBP1_iGluR_AMPA_GluR2 94.3 0.25 5.4E-06 44.8 8.5 109 86-199 94-212 (370)
21 cd06379 PBP1_iGluR_NMDA_NR1 N- 94.2 0.18 3.8E-06 45.2 7.2 112 87-198 128-248 (377)
22 cd06380 PBP1_iGluR_AMPA N-term 94.1 0.3 6.5E-06 43.6 8.4 110 86-199 102-219 (382)
23 cd06650 PKc_MEK1 Catalytic dom 94.1 0.034 7.3E-07 48.8 2.3 25 2-26 274-298 (333)
24 cd06381 PBP1_iGluR_delta_like 93.8 0.2 4.4E-06 45.6 7.0 109 86-199 112-235 (363)
25 KOG0194|consensus 93.7 0.061 1.3E-06 51.7 3.5 35 2-36 391-425 (474)
26 cd06388 PBP1_iGluR_AMPA_GluR4 93.5 0.39 8.4E-06 43.8 8.2 108 86-199 100-214 (371)
27 cd06269 PBP1_glutamate_recepto 93.4 0.28 6.1E-06 40.4 6.6 113 86-200 113-231 (298)
28 cd06394 PBP1_iGluR_Kainate_KA1 93.3 0.26 5.5E-06 44.7 6.7 107 90-197 111-220 (333)
29 cd06386 PBP1_NPR_C_like Ligand 93.2 0.35 7.6E-06 43.8 7.4 108 90-199 114-230 (387)
30 cd06391 PBP1_iGluR_delta_2 N-t 93.2 0.41 8.9E-06 44.3 8.0 113 86-200 112-236 (400)
31 cd06607 STKc_TAO Catalytic dom 93.2 0.058 1.2E-06 46.2 2.2 26 2-27 242-267 (307)
32 cd06378 PBP1_iGluR_NMDA_NR2 N- 92.4 0.42 9.1E-06 43.6 6.8 115 85-199 107-229 (362)
33 KOG1023|consensus 92.4 0.093 2E-06 50.6 2.6 34 2-35 195-228 (484)
34 cd07834 STKc_MAPK Catalytic do 92.2 0.09 2E-06 45.3 2.1 26 2-27 264-289 (330)
35 cd06634 STKc_TAO2 Catalytic do 91.8 0.14 3E-06 44.1 2.8 26 2-27 242-267 (308)
36 cd06385 PBP1_NPR_A Ligand-bind 91.2 0.89 1.9E-05 41.0 7.5 110 88-198 118-237 (405)
37 cd07849 STKc_ERK1_2_like Catal 91.2 0.11 2.4E-06 45.2 1.6 26 2-27 267-292 (336)
38 cd07859 STKc_TDY_MAPK_plant Ca 90.4 0.17 3.6E-06 43.6 2.0 24 3-26 266-289 (338)
39 cd06368 PBP1_iGluR_non_NMDA_li 90.1 1.1 2.4E-05 38.6 6.9 110 89-199 103-216 (324)
40 cd06635 STKc_TAO1 Catalytic do 90.1 0.21 4.5E-06 43.2 2.3 27 3-29 253-279 (317)
41 cd05609 STKc_MAST Catalytic do 89.7 0.16 3.4E-06 43.5 1.2 28 2-29 245-272 (305)
42 cd07852 STKc_MAPK15 Catalytic 89.6 0.26 5.5E-06 42.9 2.5 26 2-27 270-295 (337)
43 cd07858 STKc_TEY_MAPK_plant Ca 89.5 0.19 4.2E-06 43.8 1.7 25 3-27 267-291 (337)
44 cd06367 PBP1_iGluR_NMDA N-term 88.8 1.5 3.2E-05 38.9 6.8 114 86-199 109-230 (362)
45 cd06382 PBP1_iGluR_Kainate N-t 88.8 1.7 3.6E-05 37.8 7.0 111 88-199 104-217 (327)
46 cd06373 PBP1_NPR_like Ligand b 88.0 1.9 4.1E-05 38.7 7.0 109 88-198 117-236 (396)
47 cd06384 PBP1_NPR_B Ligand-bind 87.9 2 4.4E-05 38.8 7.2 110 89-199 119-238 (399)
48 cd07851 STKc_p38 Catalytic dom 87.3 0.32 7E-06 42.6 1.6 24 3-26 274-297 (343)
49 cd06633 STKc_TAO3 Catalytic do 87.3 0.33 7.1E-06 41.9 1.6 24 3-26 249-272 (313)
50 cd07856 STKc_Sty1_Hog1 Catalyt 86.9 0.44 9.6E-06 41.7 2.2 25 2-26 263-287 (328)
51 cd07854 STKc_MAPK4_6 Catalytic 86.6 0.38 8.2E-06 42.2 1.6 24 3-26 276-299 (342)
52 cd07855 STKc_ERK5 Catalytic do 86.6 0.41 9E-06 41.6 1.9 26 2-27 269-294 (334)
53 PTZ00283 serine/threonine prot 86.5 0.44 9.6E-06 45.0 2.2 26 2-27 272-297 (496)
54 cd06376 PBP1_mGluR_groupIII Li 86.5 2.3 4.9E-05 39.5 6.9 109 88-197 147-264 (463)
55 cd06366 PBP1_GABAb_receptor Li 85.8 4.6 0.0001 35.3 8.1 112 86-198 108-227 (350)
56 cd07879 STKc_p38delta_MAPK13 C 85.6 0.46 9.9E-06 41.7 1.7 25 3-27 273-297 (342)
57 cd07857 STKc_MPK1 Catalytic do 84.8 0.72 1.6E-05 40.1 2.5 24 2-25 267-290 (332)
58 cd07876 STKc_JNK2 Catalytic do 84.2 0.66 1.4E-05 40.8 2.1 25 3-27 291-315 (359)
59 PTZ00267 NIMA-related protein 83.8 0.75 1.6E-05 42.9 2.3 25 2-26 298-322 (478)
60 cd07874 STKc_JNK3 Catalytic do 83.4 0.7 1.5E-05 40.5 1.9 25 3-27 287-311 (355)
61 cd06352 PBP1_NPR_GC_like Ligan 82.5 5.1 0.00011 35.6 7.0 111 86-198 110-229 (389)
62 cd07850 STKc_JNK Catalytic dom 81.5 0.99 2.1E-05 39.6 2.1 24 3-26 287-310 (353)
63 cd04509 PBP1_ABC_transporter_G 80.9 8.8 0.00019 31.4 7.4 112 87-199 110-226 (299)
64 cd06372 PBP1_GC_G_like Ligand- 79.4 9.8 0.00021 34.1 7.8 111 88-198 112-231 (391)
65 cd07853 STKc_NLK Catalytic dom 79.3 1.1 2.3E-05 39.8 1.6 26 2-27 263-288 (372)
66 cd06350 PBP1_GPCR_family_C_lik 77.5 10 0.00022 32.9 7.1 107 87-195 134-248 (348)
67 cd05570 STKc_PKC Catalytic dom 75.3 1.2 2.6E-05 38.6 0.8 20 2-21 222-241 (318)
68 cd07880 STKc_p38gamma_MAPK12 C 74.8 2.8 6E-05 36.8 2.9 24 3-26 274-297 (343)
69 PTZ00036 glycogen synthase kin 72.7 1.9 4.2E-05 39.8 1.5 25 3-27 327-351 (440)
70 cd05585 STKc_YPK1_like Catalyt 71.0 1.5 3.3E-05 37.7 0.4 27 2-28 219-245 (312)
71 cd07878 STKc_p38beta_MAPK11 Ca 70.6 2.5 5.5E-05 36.8 1.6 24 3-26 274-297 (343)
72 cd05600 STKc_Sid2p_Dbf2p Catal 70.4 2.8 6E-05 36.4 1.9 26 2-27 232-257 (333)
73 cd06363 PBP1_Taste_receptor Li 69.6 12 0.00025 34.1 5.8 104 88-191 151-262 (410)
74 PLN00181 protein SPA1-RELATED; 69.4 3 6.4E-05 41.6 2.0 24 3-26 241-264 (793)
75 PTZ00266 NIMA-related protein 68.4 3.1 6.8E-05 43.7 2.0 25 2-26 270-294 (1021)
76 cd05582 STKc_RSK_N N-terminal 67.4 3.7 7.9E-05 35.4 1.9 22 2-23 224-245 (318)
77 cd05601 STKc_CRIK Catalytic do 65.2 3.6 7.8E-05 35.6 1.5 24 2-26 239-262 (330)
78 cd06371 PBP1_sensory_GC_DEF_li 65.1 29 0.00064 31.3 7.5 95 103-198 122-228 (382)
79 cd06364 PBP1_CaSR Ligand-bindi 65.0 16 0.00034 34.9 5.9 105 88-192 162-273 (510)
80 KOG0596|consensus 63.9 3.9 8.5E-05 40.8 1.6 23 3-25 603-625 (677)
81 cd07875 STKc_JNK1 Catalytic do 63.9 4.8 0.0001 35.5 2.1 24 3-26 294-317 (364)
82 PTZ00263 protein kinase A cata 62.7 4 8.7E-05 35.6 1.3 19 2-20 241-259 (329)
83 cd05618 STKc_aPKC_iota Catalyt 62.4 3.8 8.2E-05 35.8 1.1 19 3-21 232-250 (329)
84 cd05571 STKc_PKB Catalytic dom 61.4 4.3 9.4E-05 35.2 1.3 24 2-25 221-249 (323)
85 cd07877 STKc_p38alpha_MAPK14 C 60.7 5.1 0.00011 35.2 1.6 25 3-27 276-300 (345)
86 cd05614 STKc_MSK2_N N-terminal 59.4 4.9 0.00011 34.8 1.3 18 3-20 238-255 (332)
87 cd06362 PBP1_mGluR Ligand bind 58.8 34 0.00074 31.3 6.7 107 88-197 147-263 (452)
88 cd05589 STKc_PKN Catalytic dom 58.4 5.8 0.00012 34.4 1.6 22 2-23 227-248 (324)
89 cd06375 PBP1_mGluR_groupII Lig 58.4 33 0.00072 32.1 6.7 105 88-196 149-262 (458)
90 cd05620 STKc_nPKC_delta Cataly 56.6 4.8 0.0001 34.9 0.8 21 2-22 222-242 (316)
91 cd05592 STKc_nPKC_theta_delta 56.2 6.2 0.00013 34.2 1.4 21 2-22 222-242 (316)
92 cd05580 STKc_PKA Catalytic dom 55.9 7 0.00015 32.9 1.6 20 2-21 224-243 (290)
93 cd05573 STKc_ROCK_NDR_like Cat 55.2 7 0.00015 33.8 1.6 25 2-27 260-285 (350)
94 cd05584 STKc_p70S6K Catalytic 55.0 6.9 0.00015 34.0 1.5 18 2-19 226-243 (323)
95 cd05619 STKc_nPKC_theta Cataly 54.0 5.9 0.00013 34.4 0.9 21 2-22 222-242 (316)
96 cd05588 STKc_aPKC Catalytic do 53.8 6.6 0.00014 34.2 1.2 20 2-21 231-250 (329)
97 cd05610 STKc_MASTL Catalytic d 53.6 7.9 0.00017 38.1 1.8 25 3-27 610-634 (669)
98 cd05612 STKc_PRKX_like Catalyt 53.2 6.8 0.00015 33.3 1.1 18 3-20 225-242 (291)
99 cd05594 STKc_PKB_alpha Catalyt 53.2 6.6 0.00014 34.0 1.0 26 2-27 222-252 (325)
100 cd01391 Periplasmic_Binding_Pr 52.4 1.1E+02 0.0024 23.9 7.9 111 88-199 99-217 (269)
101 KOG0198|consensus 49.9 10 0.00023 34.6 1.9 25 4-28 253-277 (313)
102 cd05593 STKc_PKB_gamma Catalyt 49.5 8.3 0.00018 33.7 1.1 26 2-27 221-251 (328)
103 cd05595 STKc_PKB_beta Catalyti 49.0 7 0.00015 34.0 0.6 25 2-26 221-250 (323)
104 cd06374 PBP1_mGluR_groupI Liga 48.1 67 0.0014 29.9 6.9 109 87-197 160-278 (472)
105 cd06370 PBP1_Speract_GC_like L 48.0 58 0.0013 29.5 6.4 109 89-198 112-233 (404)
106 KOG0661|consensus 47.8 11 0.00023 37.1 1.6 25 3-27 267-291 (538)
107 cd05586 STKc_Sck1_like Catalyt 47.0 10 0.00023 32.8 1.3 20 3-22 225-244 (330)
108 KOG0593|consensus 45.7 16 0.00034 34.4 2.3 23 3-25 260-282 (396)
109 cd05591 STKc_nPKC_epsilon Cata 45.6 11 0.00024 32.6 1.3 33 2-34 222-254 (321)
110 cd06365 PBP1_Pheromone_recepto 43.4 86 0.0019 29.4 6.9 107 88-196 147-262 (469)
111 cd05590 STKc_nPKC_eta Catalyti 43.2 10 0.00023 32.8 0.8 22 2-23 222-243 (320)
112 cd05617 STKc_aPKC_zeta Catalyt 42.9 12 0.00026 32.6 1.1 19 3-21 230-248 (327)
113 cd05587 STKc_cPKC Catalytic do 40.2 12 0.00026 32.4 0.6 20 3-22 228-247 (324)
114 PLN03225 Serine/threonine-prot 40.0 18 0.00038 35.2 1.8 24 3-26 426-449 (566)
115 PRK13184 pknD serine/threonine 39.5 25 0.00055 36.8 2.9 33 3-35 261-294 (932)
116 PF01795 Methyltransf_5: MraW 39.2 52 0.0011 30.2 4.6 83 101-183 6-88 (310)
117 TIGR00006 S-adenosyl-methyltra 39.0 80 0.0017 28.8 5.8 85 100-184 5-89 (305)
118 KOG1989|consensus 38.7 33 0.00072 35.1 3.6 34 2-35 282-315 (738)
119 cd06348 PBP1_ABC_ligand_bindin 37.6 82 0.0018 27.3 5.5 107 87-193 108-222 (344)
120 cd06338 PBP1_ABC_ligand_bindin 37.0 1.2E+02 0.0026 26.1 6.5 107 87-193 113-226 (345)
121 KOG0201|consensus 36.8 29 0.00063 33.7 2.7 25 3-27 239-263 (467)
122 PHA03210 serine/threonine kina 35.9 25 0.00055 33.2 2.1 24 3-26 430-453 (501)
123 KOG0582|consensus 35.7 26 0.00057 34.2 2.2 24 3-26 269-292 (516)
124 cd06336 PBP1_ABC_ligand_bindin 34.1 1.6E+02 0.0034 25.8 6.8 109 86-194 111-225 (347)
125 cd05575 STKc_SGK Catalytic dom 33.0 18 0.00039 31.3 0.6 21 2-22 222-242 (323)
126 cd06361 PBP1_GPC6A_like Ligand 30.5 1.7E+02 0.0037 26.9 6.6 107 88-197 147-265 (403)
127 cd05604 STKc_SGK3 Catalytic do 29.9 21 0.00046 30.9 0.5 22 2-23 222-243 (325)
128 PTZ00426 cAMP-dependent protei 29.9 28 0.00061 30.8 1.3 24 3-26 255-283 (340)
129 cd05602 STKc_SGK1 Catalytic do 26.9 25 0.00055 30.4 0.5 23 3-25 223-245 (325)
130 cd06344 PBP1_ABC_ligand_bindin 25.5 2.9E+02 0.0062 23.9 6.9 102 86-188 106-216 (332)
131 cd06342 PBP1_ABC_LIVBP_like Ty 24.6 3.4E+02 0.0073 23.1 7.0 100 88-188 109-215 (334)
132 cd06346 PBP1_ABC_ligand_bindin 24.6 3.1E+02 0.0067 23.5 6.8 102 87-188 111-217 (312)
133 cd06332 PBP1_aromatic_compound 24.0 2.4E+02 0.0053 23.9 6.0 102 87-189 108-212 (333)
134 cd05603 STKc_SGK2 Catalytic do 21.8 48 0.001 28.5 1.3 21 2-22 222-242 (321)
135 cd06360 PBP1_alkylbenzenes_lik 20.9 2.6E+02 0.0056 23.9 5.6 102 88-190 109-216 (336)
136 PF08247 ENOD40: ENOD40 protei 20.6 17 0.00037 18.0 -1.0 8 7-14 1-8 (12)
137 cd06349 PBP1_ABC_ligand_bindin 20.2 3.4E+02 0.0074 23.4 6.3 107 87-193 108-220 (340)
No 1
>KOG0196|consensus
Probab=99.39 E-value=3.6e-13 Score=132.98 Aligned_cols=104 Identities=30% Similarity=0.425 Sum_probs=86.6
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhccccc-ccccccCCCCCCCCCCCCCCCCCCchhhHhhhhhhhhhhh
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTANEYL-GQEYLELEAPLLDTPPSSEDESNDDEETCAYLLESVIRIS 80 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~~~~~-~~~Yldls~p~~~~sps~~d~~~~~~~t~~~~lesI~~Wr 80 (202)
.||+||++||++++.+||+|.||+..|+++++++.+++. ...-...+.++.+. +.+|.. ...++++|+++|
T Consensus 862 aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~SLk~~~~~~~r~s~~lld~--~~~~~~--~f~sv~~WL~aI---- 933 (996)
T KOG0196|consen 862 ALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNSLKTIAPESPRPSQPLLDR--SGSDFT--PFRSVGDWLEAI---- 933 (996)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchhhcccCCCCCCCcccccCC--CCCCCc--ccCCHHHHHHHh----
Confidence 699999999999999999999999999999999998776 44444455565553 333433 448999999999
Q ss_pred ccCcccccceEeeCCCCCChHHHHHHH----HHHhcCCcce
Q psy12232 81 NLDGEQMKYLIQVNPPGDILPEVIRAI----ILMQNITDAG 117 (202)
Q Consensus 81 ~l~~~~~~YLlqv~pp~~~~pe~vr~~----~~~~nit~Ag 117 (202)
.+.+|..+|+.+|....+.|.++ +.++|||.+|
T Consensus 934 ----km~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~G 970 (996)
T KOG0196|consen 934 ----KMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAG 970 (996)
T ss_pred ----hhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecc
Confidence 49999999999999999999998 5899999754
No 2
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=98.71 E-value=2.7e-08 Score=90.43 Aligned_cols=116 Identities=48% Similarity=0.784 Sum_probs=105.4
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhccCCccccccCCC-cchhHHHHHhhcccCce
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQNIPTRHIIAPVE-DSRSVKRQLFRFKDLDI 164 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~~~p~rh~~~~~~-~~~~~~~~~~~~~~~d~ 164 (202)
+.+|.++..|+......++.+++...|-+..+++|++.+.+.|.+..++++.+.+|...... ...++..+|+++++.+.
T Consensus 106 ~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W~~v~iIYddd~gl~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~Lk~lk~~~~ 185 (368)
T cd06383 106 EQPYLIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFVMDHKYKSLLQNWPTRHVITIINSIIDEVREQIKRLRNLDI 185 (368)
T ss_pred cCceEEEEeCChHHHHHHHHHHHHHCCCcEEEEEEEcCchhhHHHHHHHHhHHhcCCEEEEeccchhHHHHHHHHHhCCC
Confidence 56788999999999999999999999999999999999999999999999988888776543 35678899999999999
Q ss_pred eeeeeecch-hhHHHHHhhhhhhhcccccceeEEeecc
Q psy12232 165 VNYFILGRL-QTIKMILDSANVNKFFGRKFAWHAITLV 201 (202)
Q Consensus 165 ~n~f~~g~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (202)
.++||+++. +.+..+|+.|...++.|++|.|+..+.|
T Consensus 186 ~rIIi~~s~~~~~~~il~qA~~lgm~~~~y~wilt~ld 223 (368)
T cd06383 186 KNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGNPD 223 (368)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHcCCcCCceEEEEcCCC
Confidence 999999997 9999999999999999999999998765
No 3
>KOG4278|consensus
Probab=98.02 E-value=3.6e-06 Score=83.20 Aligned_cols=35 Identities=31% Similarity=0.868 Sum_probs=32.6
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhc
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTA 36 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~ 36 (202)
.+|+||+.||+|+|.+||+|++|...|+.|+++.+
T Consensus 494 kVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~sS 528 (1157)
T KOG4278|consen 494 KVYELMRACWNWSPSDRPSFAEIHQAFETMFSSSS 528 (1157)
T ss_pred HHHHHHHHHhcCCcccCccHHHHHHHHHHHhcccc
Confidence 58999999999999999999999999999998654
No 4
>KOG0200|consensus
Probab=97.98 E-value=6.1e-06 Score=79.99 Aligned_cols=47 Identities=30% Similarity=0.567 Sum_probs=37.8
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcccccccccccCCCCCCCCC
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTANEYLGQEYLELEAPLLDTP 55 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~~~~~~~~Yldls~p~~~~s 55 (202)
++|++|+.||+.+|.+||+|.+++..|+.++.. . .|+++......+.
T Consensus 550 eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l~~--~-----~~~~~~~~~~~~~ 596 (609)
T KOG0200|consen 550 EIYDLMKSCWNADPEDRPTFSECVEFFEKHLQD--E-----LYLDVEAFEQSKL 596 (609)
T ss_pred HHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHH--h-----hhhhhhccccccc
Confidence 689999999999999999999999999997665 1 4666665444433
No 5
>KOG1095|consensus
Probab=97.79 E-value=2.4e-05 Score=80.32 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=37.5
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcccccccccccCCCCC
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTANEYLGQEYLELEAPL 51 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~~~~~~~~Yldls~p~ 51 (202)
.||+||++||+.+|.+||+|..|++++..++..... .+|.......
T Consensus 932 ~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~~~----~~~~~~~a~~ 977 (1025)
T KOG1095|consen 932 KLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAALG----TIYGPLPADY 977 (1025)
T ss_pred HHHHHHHHHccCChhhCccHHHHHhhhhhhhhhhcc----Cccccccccc
Confidence 589999999999999999999999999988886654 4555544433
No 6
>KOG4257|consensus
Probab=97.60 E-value=4.6e-05 Score=75.41 Aligned_cols=33 Identities=36% Similarity=0.831 Sum_probs=31.1
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhh
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTV 34 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~ 34 (202)
.||.||.+||.++|.+||+|.+|+..|..+++.
T Consensus 620 ~LYslmskcWayeP~kRPrftei~~~lsdv~qe 652 (974)
T KOG4257|consen 620 ALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQE 652 (974)
T ss_pred HHHHHHHHHhccCcccCCcHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999884
No 7
>KOG1025|consensus
Probab=97.25 E-value=0.0003 Score=71.42 Aligned_cols=37 Identities=27% Similarity=0.596 Sum_probs=34.8
Q ss_pred ChHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcc
Q psy12232 1 MSSYELMRDCWSYVASERPEFIQLVSKLDRILTVTAN 37 (202)
Q Consensus 1 ~~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~~ 37 (202)
+++|.+|.+||..++..||+|.++...+.++.+++..
T Consensus 927 iDVy~~mvkCwmid~~~rp~fkel~~~fs~~ardpqr 963 (1177)
T KOG1025|consen 927 IDVYMVMVKCWMIDADSRPTFKELAEEFSRMARDPQR 963 (1177)
T ss_pred HHHHHHHHHHhccCcccCccHHHHHHHHHHHhcCcce
Confidence 3799999999999999999999999999999999865
No 8
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=97.03 E-value=0.0005 Score=59.34 Aligned_cols=36 Identities=25% Similarity=0.599 Sum_probs=32.2
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcc
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTAN 37 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~~ 37 (202)
.+++++.+||..+|.+||+|.+++..+..+...+..
T Consensus 239 ~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~~~ 274 (316)
T cd05108 239 DVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQR 274 (316)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCCch
Confidence 478999999999999999999999999988877653
No 9
>KOG0192|consensus
Probab=97.01 E-value=0.00064 Score=62.64 Aligned_cols=35 Identities=34% Similarity=0.717 Sum_probs=31.1
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhc
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTA 36 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~ 36 (202)
.+-.||.+||+.+|..||+|.+|+..|+.+.....
T Consensus 274 ~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~ 308 (362)
T KOG0192|consen 274 HLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHIS 308 (362)
T ss_pred HHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhc
Confidence 36689999999999999999999999998887544
No 10
>KOG0199|consensus
Probab=96.88 E-value=0.00055 Score=68.70 Aligned_cols=28 Identities=29% Similarity=0.792 Sum_probs=25.7
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLD 29 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le 29 (202)
+||++|++||..+|.+||||..|++.+-
T Consensus 343 dIY~imk~cWah~paDRptFsair~~~~ 370 (1039)
T KOG0199|consen 343 DIYQIMKNCWAHNPADRPTFSAIREDLV 370 (1039)
T ss_pred HHHHHHHHhccCCccccccHHHHHHhHH
Confidence 6999999999999999999999996654
No 11
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=96.84 E-value=0.0017 Score=56.62 Aligned_cols=52 Identities=50% Similarity=0.930 Sum_probs=40.2
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcccccccccccCCCCCCCCCCC
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTANEYLGQEYLELEAPLLDTPPS 57 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~~~~~~~~Yldls~p~~~~sps 57 (202)
.+.+++.+||+.+|.+||++.+|+..|+++...... ..|..++.+..++++-
T Consensus 264 ~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~~~----~~~~~~~~~~~~~~~~ 315 (334)
T cd05100 264 ELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTST----DEYLDLSVPFEQYSPG 315 (334)
T ss_pred HHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhcCC----CCeeeeeeeeeecCCC
Confidence 478999999999999999999999999999865543 3455556555554443
No 12
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=96.41 E-value=0.011 Score=50.49 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=84.9
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhccCCc--ccccc-CCC-cchhHHHHHhhccc
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQNIPT--RHIIA-PVE-DSRSVKRQLFRFKD 161 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~~~p~--rh~~~-~~~-~~~~~~~~~~~~~~ 161 (202)
..+|.+++.|+....-+++..++...+....+++|++.-. .-....+++..-. .++.. .+. +.++...++++++.
T Consensus 105 ~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~l~~ 183 (328)
T cd06351 105 ESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYDSDEG-LSRLQELLDESGIKGIQVTVRRLDLDDDNYRQLLKELKR 183 (328)
T ss_pred cccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEeCchH-HHHHHHHHHhhcccCceEEEEEecCCchhHHHHHHHHhh
Confidence 5678899999888888888888888999999999987762 2223344442111 11111 111 12358889999998
Q ss_pred Cceeeeeeecch-hhHHHHHhhhhhhhcccccceeEEeecc
Q psy12232 162 LDIVNYFILGRL-QTIKMILDSANVNKFFGRKFAWHAITLV 201 (202)
Q Consensus 162 ~d~~n~f~~g~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (202)
....+++|++.. +.+..+|+.|....+.+..|-|...+.+
T Consensus 184 ~~~~~vil~~~~~~~~~~~l~~a~~~gm~~~~~~~i~~~~~ 224 (328)
T cd06351 184 SESRRIILDCSSEEEAKEILEQAVELGMMGYGYHWILTNLD 224 (328)
T ss_pred cccceEEEECCcHHHHHHHHHHHHHhccccCCcEEEEecCC
Confidence 877788998888 9999999999999999999999987654
No 13
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=96.40 E-value=0.0042 Score=53.27 Aligned_cols=36 Identities=28% Similarity=0.610 Sum_probs=31.7
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcc
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTAN 37 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~~ 37 (202)
.+++++.+||..+|.+||++.+++..|..+......
T Consensus 239 ~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~~~~ 274 (303)
T cd05110 239 DVYMVMVKCWMIDADSRPKFKELAAEFSRMARDPQR 274 (303)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhchhh
Confidence 468899999999999999999999999988776543
No 14
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=96.37 E-value=0.015 Score=52.44 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=79.9
Q ss_pred ccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhc---cCCccccccCCC-cchhHHHHHhhcccC
Q psy12232 87 MKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQ---NIPTRHIIAPVE-DSRSVKRQLFRFKDL 162 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~---~~p~rh~~~~~~-~~~~~~~~~~~~~~~ 162 (202)
..|.+.+.|+......++..++...+....+++|+++..... -+.+.+ .....-...... +..++..||+++|..
T Consensus 113 ~~~~~~~~~~~~~~~~a~~~~~~~~~wk~vaily~~~~g~~~-l~~~~~~~~~~g~~v~~~~~~~~~~d~~~~L~~ik~~ 191 (384)
T cd06393 113 DTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDSTGLIR-LQELIMAPSRYNIRLKIRQLPTDSDDARPLLKEMKRG 191 (384)
T ss_pred ceeEEEeccCHHHHHHHHHHHHHHcCCcEEEEEEeCchhHHH-HHHHHHhhhccCceEEEEECCCCchHHHHHHHHHhhc
Confidence 345555555544566777778888899999999997654221 112221 111221111223 357899999999998
Q ss_pred ceeeeeeecchhhHHHHHhhhhhhhcccccceeEEeec
Q psy12232 163 DIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAITL 200 (202)
Q Consensus 163 d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (202)
.-..+|+.|.......++..|....+.+..|+|..-+.
T Consensus 192 ~~~~iil~~~~~~~~~il~qa~~~gm~~~~~~~~~~~~ 229 (384)
T cd06393 192 REFRIIFDCSHQMAAQILKQAMAMGMMTEYYHFIFTTL 229 (384)
T ss_pred CceEEEEECCHHHHHHHHHHHHHhccccCceEEEEccC
Confidence 88888999999999999999999999999999975443
No 15
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=96.29 E-value=0.022 Score=52.37 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=88.0
Q ss_pred ccccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccc---hhhhhhhc---cCCccccccCCCcchhHHHHHhh
Q psy12232 85 EQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFD---HKYKSLLQ---NIPTRHIIAPVEDSRSVKRQLFR 158 (202)
Q Consensus 85 ~~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~---~ky~~ll~---~~p~rh~~~~~~~~~~~~~~~~~ 158 (202)
...+|.+++.|+ .-.++..++...+=....++||..+..- +-++.+-+ .||++.+.. +.+..+....++.
T Consensus 99 ~~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~~~iYd~d~gl~~Lq~L~~~~~~~~~~V~~~~v~~-~~~~~~~~~~l~e 174 (372)
T cd06387 99 ADVQFVIQMRPA---LKGAILSLLAHYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGN-IKDVQEFRRIIEE 174 (372)
T ss_pred CCCceEEEEChh---HHHHHHHHHHhcCCCEEEEEecCchhHHHHHHHHHhhccCCceEEEEEecc-CCchHHHHHHHHH
Confidence 455788999998 6778999999999999999999877632 22222222 135665543 3345667778888
Q ss_pred cccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEeecc
Q psy12232 159 FKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAITLV 201 (202)
Q Consensus 159 ~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (202)
++.....+|.|-.+-+.++.+|..|...++.++.|.|..-++|
T Consensus 175 l~~~~~r~iIld~s~~~~~~il~~a~e~gM~~~~y~~ilt~ld 217 (372)
T cd06387 175 MDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLG 217 (372)
T ss_pred hccccceEEEEECCHHHHHHHHHHHHHcCccccceEEEEecCC
Confidence 8888999999999999999999999999999999999976643
No 16
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=95.51 E-value=0.077 Score=48.38 Aligned_cols=111 Identities=10% Similarity=0.153 Sum_probs=83.3
Q ss_pred ccccceEeeCCCCCChHHHHHHHHHHhcCCcceeeccccccc---chhhhhhhc-c--CCccccccCCCcchhHHHHHhh
Q psy12232 85 EQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIF---DHKYKSLLQ-N--IPTRHIIAPVEDSRSVKRQLFR 158 (202)
Q Consensus 85 ~~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~---~~ky~~ll~-~--~p~rh~~~~~~~~~~~~~~~~~ 158 (202)
...+|.+++.|. .-.++..++...|-+..+++|++.+.. .+-.+.+-+ + |.+..+.. .+.+++..+|++
T Consensus 92 ~~~~~~i~~~P~---~~~Ai~diI~~~~W~~v~iIYd~d~g~~~lq~l~~~~~~~~~~I~~~~~~~--~~~~d~~~~L~~ 166 (364)
T cd06390 92 TSNQFVLQLRPE---LQDALISVIEHYKWQKFVYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILT--TTEEGYRKLFQD 166 (364)
T ss_pred CCCceEEEeChh---HHHHHHHHHHHcCCcEEEEEEeCCccHHHHHHHHHhhhccCceeeEEEeec--CChHHHHHHHHh
Confidence 466788898886 667899999999999999999988762 122222222 1 22222222 234689999999
Q ss_pred cccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEeec
Q psy12232 159 FKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAITL 200 (202)
Q Consensus 159 ~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (202)
++......+++-++.+.+..+|..|.....-++.|.|.+-+.
T Consensus 167 ik~~~~rvIVl~~~~~~~~~~L~~a~~~~~~~~gy~wI~t~l 208 (364)
T cd06390 167 LDKKKERLIVVDCESERLNAILNQIIKLEKNGIGYHYILANL 208 (364)
T ss_pred ccccCCeEEEEECCHHHHHHHHHHHHHhhccCCceEEEecCC
Confidence 999999999999999999999999977777899999987653
No 17
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=95.48 E-value=0.033 Score=47.67 Aligned_cols=114 Identities=10% Similarity=0.165 Sum_probs=84.0
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccc---cchhhhhhhc--cCCcccc-ccCCC---cchhHHHHH
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFI---FDHKYKSLLQ--NIPTRHI-IAPVE---DSRSVKRQL 156 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~---~~~ky~~ll~--~~p~rh~-~~~~~---~~~~~~~~~ 156 (202)
.-+|.+++.|+.....+++.+++...+.+..++++++.-. .-...+.+++ +....+. ..... +.+++.+.|
T Consensus 94 ~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (348)
T PF01094_consen 94 RYPTFFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVISSDSDAEELLKKL 173 (348)
T ss_dssp TTTTEEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHH
T ss_pred hccccccccccHHHHHHHHHHhhhcCCCceeeeeccccccccccchhhhhhhcccccceecccccccccccchhhhhhhh
Confidence 5567888888888888899999999999999999998877 1223333333 2333333 22222 356666666
Q ss_pred hhcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEeec
Q psy12232 157 FRFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAITL 200 (202)
Q Consensus 157 ~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (202)
++ ......-+++.++...+..+|.+|...++++..|-|.....
T Consensus 174 ~~-~~~~~rvvil~~~~~~~~~~l~~a~~~~~~~~~~~~i~~~~ 216 (348)
T PF01094_consen 174 KE-IKSGARVVILCSSPEDARQFLEAAYELGMTSGDYVWILTDL 216 (348)
T ss_dssp HH-HTTTTSEEEEESBHHHHHHHHHHHHHTTTSSTTSEEEEETT
T ss_pred hh-ccccceeeeeecccccccccccchhhhhccccceeEEeecc
Confidence 66 55888888999999999999999999999999999997654
No 18
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=95.28 E-value=0.055 Score=50.50 Aligned_cols=114 Identities=11% Similarity=0.190 Sum_probs=84.3
Q ss_pred ccccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccc---hhhhhhhcc---CCcccc-------ccCCCcchh
Q psy12232 85 EQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFD---HKYKSLLQN---IPTRHI-------IAPVEDSRS 151 (202)
Q Consensus 85 ~~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~---~ky~~ll~~---~p~rh~-------~~~~~~~~~ 151 (202)
...+|.+.+.|+ ...-.++..++...+-....++||+.+... +-+..+-++ |-++.+ +...- .+.
T Consensus 111 ~~~~~~~~lrp~-~~~~~Ai~dlV~~~~W~~v~~iYD~d~gl~~lq~L~~~~~~~~~~I~~~~v~~~~~~~~~~~l-~~~ 188 (400)
T cd06392 111 EGEEYTLAARPP-VRLNDVMLKLVTELRWQKFIVFYDSEYDIRGLQSFLDQASRLGLDVSLQKVDRNISRVFTNLF-TTM 188 (400)
T ss_pred CcCceeEEecCc-hHHHHHHHHHHHhCCCcEEEEEEECcccHHHHHHHHHHHhhcCceEEEEEcccCcchhhhhHH-HHH
Confidence 466888888886 344557999999999999999999886632 323222221 112221 11111 466
Q ss_pred HHHHHhhcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEeecc
Q psy12232 152 VKRQLFRFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAITLV 201 (202)
Q Consensus 152 ~~~~~~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (202)
+.++|.++++.+ ..|.|..+.+.+..+|..|...++.++.|.|.+-+.+
T Consensus 189 ~~~~L~~~~~~~-r~iVv~~s~~~~~~il~qA~~lgM~~~~y~wI~t~~~ 237 (400)
T cd06392 189 KTEELNRYRDTL-RRAILLLSPRGAQTFINEAVETNLASKDSHWVFVNEE 237 (400)
T ss_pred HHhhhhhccccc-eEEEEEcCcHHHHHHHHHHHHhCcccCCeEEEEecCC
Confidence 788999999999 9999999999999999999999999999999986653
No 19
>KOG4721|consensus
Probab=95.11 E-value=0.014 Score=57.92 Aligned_cols=27 Identities=33% Similarity=0.720 Sum_probs=24.6
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSKLD 29 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~Le 29 (202)
+--||++||+.+|.+||+|.+|+.+|+
T Consensus 340 fklL~Kqcw~sKpRNRPSFrqil~Hld 366 (904)
T KOG4721|consen 340 FKLLLKQCWNSKPRNRPSFRQILLHLD 366 (904)
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHh
Confidence 345899999999999999999999997
No 20
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=94.29 E-value=0.25 Score=44.80 Aligned_cols=109 Identities=9% Similarity=0.169 Sum_probs=80.0
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhcc-------CCccccccCCC---cchhHHHH
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQN-------IPTRHIIAPVE---DSRSVKRQ 155 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~~-------~p~rh~~~~~~---~~~~~~~~ 155 (202)
...|.+++.|+ .-.++..++...+-...+++|++.|... -.+.+++. |.... ...+. ...+...+
T Consensus 94 ~~~f~~~~~p~---~~~ai~d~i~~~~wk~vailYdsd~gl~-~lq~l~~~~~~~g~~V~~~~-~~~i~~~~~~~d~~~~ 168 (370)
T cd06389 94 THPFVIQMRPD---LKGALLSLIEYYQWDKFAYLYDSDRGLS-TLQAVLDSAAEKKWQVTAIN-VGNINNDRKDEAYRSL 168 (370)
T ss_pred CCceEEEecch---hhhHHHHHHHhcCCcEEEEEecCchHHH-HHHHHHHhhccCCceEEEEE-eecCCCccchHHHHHH
Confidence 45677788877 4566777889999999999999776521 11122221 11111 11111 24589999
Q ss_pred HhhcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 156 LFRFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 156 ~~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
|+++|....-.+++-++.+.+..+|..|...++.++.|.|+.-+
T Consensus 169 L~~ik~~~~~~Iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~ 212 (370)
T cd06389 169 FQDLENKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN 212 (370)
T ss_pred HHHhccccceEEEEECCHHHHHHHHHHHHHhCccccceEEEEcc
Confidence 99999999999999999999999999999999999999997643
No 21
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=94.18 E-value=0.18 Score=45.16 Aligned_cols=112 Identities=14% Similarity=0.204 Sum_probs=77.6
Q ss_pred ccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccc-cccc--hhhhhhhc--cC----CccccccCCCcchhHHHHHh
Q psy12232 87 MKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDS-FIFD--HKYKSLLQ--NI----PTRHIIAPVEDSRSVKRQLF 157 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~-f~~~--~ky~~ll~--~~----p~rh~~~~~~~~~~~~~~~~ 157 (202)
-+|.+...|+....-.++..++...+.+..+++++++ |.-. -..+..++ ++ .......--.+..++..+|+
T Consensus 128 ~~~~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~ 207 (377)
T cd06379 128 HLSFLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQ 207 (377)
T ss_pred cccEEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHH
Confidence 3566666666554455666778888999999998765 3311 12223333 12 11211111113468899999
Q ss_pred hcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEe
Q psy12232 158 RFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAI 198 (202)
Q Consensus 158 ~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (202)
+++..+.--+++.|.......++..|...++.|..|.|..-
T Consensus 208 ~ik~~~~~vIvl~~~~~~~~~l~~qa~~~g~~~~~~~wi~t 248 (377)
T cd06379 208 EAKELTSRVILLSASEDDAAVIYRNAGMLNMTGEGYVWIVS 248 (377)
T ss_pred HHhhcCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 99998888889999999999999999999999999999853
No 22
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=94.08 E-value=0.3 Score=43.61 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=76.6
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhc-----c--CCcccc-ccCCCcchhHHHHHh
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQ-----N--IPTRHI-IAPVEDSRSVKRQLF 157 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~-----~--~p~rh~-~~~~~~~~~~~~~~~ 157 (202)
..+|.+.+.|+ . -.++..++...+....+++|+++..... .+.+++ + +..... .....+.+++..||+
T Consensus 102 ~~~~~fr~~p~-~--~~a~~~~~~~~~wk~vaii~~~~~~~~~-~~~~~~~~~~~g~~i~v~~~~~~~~~~~~d~~~~L~ 177 (382)
T cd06380 102 GNQFVLQMRPS-L--IQALVDLIEHYGWRKVVYLYDSDRGLLR-LQQLLDYLREKDNKWQVTARRVDNVTDEEEFLRLLE 177 (382)
T ss_pred CCcEEEEeccc-h--hHHHHHHHHhcCCeEEEEEECCCcchHH-HHHHHHHHhccCCceEEEEEEecCCCcHHHHHHHHH
Confidence 45677776664 2 2356677788899999999987764221 122222 2 111110 111112468999999
Q ss_pred hcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 158 RFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 158 ~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
++|..+...+++.+..+....++..|....+.++.|.|+.-+
T Consensus 178 ~ik~~~~~~iil~~~~~~~~~i~~qa~~~gm~~~~y~~i~~~ 219 (382)
T cd06380 178 DLDRRKEKRIVLDCESERLNKILEQIVDVGKNRKGYHYILAN 219 (382)
T ss_pred HhhcccceEEEEECCHHHHHHHHHHHHHhhhcccceEEEEcc
Confidence 999998888888999999999999999999999999997643
No 23
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=94.07 E-value=0.034 Score=48.85 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.3
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
++.+++.+||+.+|.+|||+.+|+.
T Consensus 274 ~~~~li~~~L~~~P~~Rpt~~ell~ 298 (333)
T cd06650 274 EFQDFVNKCLIKNPAERADLKQLMV 298 (333)
T ss_pred HHHHHHHHhccCCcccCcCHHHHhh
Confidence 3578999999999999999998874
No 24
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=93.84 E-value=0.2 Score=45.61 Aligned_cols=109 Identities=15% Similarity=0.290 Sum_probs=70.7
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhc-----cCCccccccCCC-cchhHH------
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQ-----NIPTRHIIAPVE-DSRSVK------ 153 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~-----~~p~rh~~~~~~-~~~~~~------ 153 (202)
..+|.+.+.|. +....++..++...+-...+++|+++.... -.+.+++ +++.. ..... +...+-
T Consensus 112 ~~~~~f~~rp~-~~~~~ai~~lv~~~~wkkvavly~~d~g~~-~l~~~~~~~~~~g~~v~--~~~~~~~~~~~~~~l~~~ 187 (363)
T cd06381 112 GQQYTLALRPP-VRLNDVMLRLVTEWRWQKFVYFYDNDYDIR-GLQEFLDQLSRQGIDVL--LQKVDLNISKMATALFTT 187 (363)
T ss_pred cceeEEEEecc-HHHHHHHHHHHHhCCCeEEEEEEECCchHH-HHHHHHHHHHhcCceEE--EEecccccchhhhhhhhH
Confidence 45688877765 456677888888889888899999886421 1122222 11111 11111 111111
Q ss_pred ---HHHhhcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 154 ---RQLFRFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 154 ---~~~~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
++|.|++. +...+++.++.+.+..+|..|...++.++.|.|+.++
T Consensus 188 ~~~~~l~~~~~-~~~~vIl~~~~~~~~~~l~~a~~~gm~~~~~~wi~~~ 235 (363)
T cd06381 188 MRCEELNRYRD-TLRRALLLLSPNGAYTFIDASVETNLAIKDSHWFLIN 235 (363)
T ss_pred HHHHHHHhhcc-cceEEEEEcCcHHHHHHHHHHHHcCCCcCceEEEEec
Confidence 22333333 5567788899999999999999999999999999865
No 25
>KOG0194|consensus
Probab=93.70 E-value=0.061 Score=51.72 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=31.3
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhc
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVTA 36 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~~ 36 (202)
.+..+|.+||..+|.+||+|.++.+.++.+.....
T Consensus 391 ~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~ 425 (474)
T KOG0194|consen 391 ELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE 425 (474)
T ss_pred HHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999998887654
No 26
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=93.46 E-value=0.39 Score=43.80 Aligned_cols=108 Identities=11% Similarity=0.205 Sum_probs=79.3
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhc----c---CCccccccCCCcchhHHHHHhh
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQ----N---IPTRHIIAPVEDSRSVKRQLFR 158 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~----~---~p~rh~~~~~~~~~~~~~~~~~ 158 (202)
...|++++.|+ .-.++..++...+-...+|+||...... ..+.+++ + +..+.+.. . +..+...+|++
T Consensus 100 ~~~f~i~~~p~---~~~a~~~~i~~~~wk~vaiiYd~~~~~~-~lq~l~~~~~~~g~~v~~~~~~~-~-~~~d~~~~L~~ 173 (371)
T cd06388 100 ESQFVLQLRPS---LRGALLSLLDHYEWNRFVFLYDTDRGYS-ILQAIMEKAGQNGWQVSAICVEN-F-NDASYRRLLED 173 (371)
T ss_pred CCceEEEeChh---hhhHHHHHHHhcCceEEEEEecCCccHH-HHHHHHHhhHhcCCeeeeEEecc-C-CcHHHHHHHHH
Confidence 44566777777 3455666788889999999998666431 1333333 1 12222211 1 24699999999
Q ss_pred cccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 159 FKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 159 ~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
++......+++-++-+.+..+|..|...++-++.|.|+.-+
T Consensus 174 ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~ 214 (371)
T cd06388 174 LDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIAN 214 (371)
T ss_pred hcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEcc
Confidence 99999999999999999999999999999999999998744
No 27
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=93.39 E-value=0.28 Score=40.37 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=77.0
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccc---cchhhhhhhcc--CCccccccCCCcchhHHHHHhhcc
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFI---FDHKYKSLLQN--IPTRHIIAPVEDSRSVKRQLFRFK 160 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~---~~~ky~~ll~~--~p~rh~~~~~~~~~~~~~~~~~~~ 160 (202)
+.+|.+++.|+.....+++..++...+-+..++++++.-. +-..++..+++ +-.+-.........++..++++++
T Consensus 113 ~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~ 192 (298)
T cd06269 113 QFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIPDGSEDIRRLLKELK 192 (298)
T ss_pred hCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCeeEEEEEEcCCCHHHHHHHHHHHH
Confidence 5678888888877788888889999999888999887631 11222333332 111111111111257888999999
Q ss_pred cCceeeeeeecch-hhHHHHHhhhhhhhcccccceeEEeec
Q psy12232 161 DLDIVNYFILGRL-QTIKMILDSANVNKFFGRKFAWHAITL 200 (202)
Q Consensus 161 ~~d~~n~f~~g~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (202)
+.+. +.+|+... +.+..+|+.|...++. .+|-|...+.
T Consensus 193 ~~~~-~viv~~~~~~~~~~~l~~a~~~g~~-~~~~~i~~~~ 231 (298)
T cd06269 193 SSTA-RVIVVFSSEEDALRLLEEAVELGMM-TGYHWIITDL 231 (298)
T ss_pred hcCC-cEEEEEechHHHHHHHHHHHHcCCC-CCeEEEEECh
Confidence 8887 66666554 8999999999999998 7888877654
No 28
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=93.32 E-value=0.26 Score=44.74 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=80.4
Q ss_pred eEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhc-cCCccccccCCC--cchhHHHHHhhcccCceee
Q psy12232 90 LIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQ-NIPTRHIIAPVE--DSRSVKRQLFRFKDLDIVN 166 (202)
Q Consensus 90 Llqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~-~~p~rh~~~~~~--~~~~~~~~~~~~~~~d~~n 166 (202)
.+++.|.......++..++...|-....++|++.-.+-. -..+|+ ..+++-.+.... +..++..||+++++...-.
T Consensus 111 ~i~l~P~~~~~~~Ai~dli~~~~W~~v~~iYe~d~~l~~-L~~~l~~~~~~~~~i~~~~~~~~~d~~~~L~~ik~~~~~~ 189 (333)
T cd06394 111 SVNLHPSNEDISVAVAGILNSFNYPTASLICAKAECLLR-LEELLRQFLISKETLSVRMLDDSRDPTPLLKEIRDDKTAT 189 (333)
T ss_pred EEEecCCHHHHHHHHHHHHHhcCCCEEEEEEeCcHHHHH-HHHHHHhhcccCCceeeEEccCcccHHHHHHHHHhcCCCE
Confidence 367777666677889999999999999999987642110 011122 122222222222 4568999999999999999
Q ss_pred eeeecchhhHHHHHhhhhhhhcccccceeEE
Q psy12232 167 YFILGRLQTIKMILDSANVNKFFGRKFAWHA 197 (202)
Q Consensus 167 ~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (202)
|++-++.+....+|..|+...+-++.|+|.+
T Consensus 190 iVv~~~~~~a~~il~qa~~lGm~~~~y~~i~ 220 (333)
T cd06394 190 IIIDANASMSHTILLKASELGMTSAFYKYIL 220 (333)
T ss_pred EEEECChHHHHHHHHHHHHcCCCCCceEEEE
Confidence 9999999999999999999999999999984
No 29
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=93.19 E-value=0.35 Score=43.80 Aligned_cols=108 Identities=12% Similarity=0.116 Sum_probs=77.5
Q ss_pred eEeeCCCCCChHHHHHHHHHHhcCCcceeecccc-cc------cchhhhhhhc--cCCccccccCCCcchhHHHHHhhcc
Q psy12232 90 LIQVNPPGDILPEVIRAIILMQNITDAGILFDDS-FI------FDHKYKSLLQ--NIPTRHIIAPVEDSRSVKRQLFRFK 160 (202)
Q Consensus 90 Llqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~-f~------~~~ky~~ll~--~~p~rh~~~~~~~~~~~~~~~~~~~ 160 (202)
++.+.|+....-.++..++...|-+..+++++++ |. ++.-.+ .++ ++-......--.+..+...+|++++
T Consensus 114 ~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~~~~~~~~~~~~~~l~~-~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik 192 (387)
T cd06386 114 LTRVAPSYVKMGETFSALFERFHWRSALLVYEDDKQERNCYFTLEGVHH-VFQEEGYHMSIYPFDETKDLDLDEIIRAIQ 192 (387)
T ss_pred eEEecCchHHHHHHHHHHHHhCCCeEEEEEEEcCCCCccceehHHHHHH-HHHhcCceEEEEecCCCCcccHHHHHHHHH
Confidence 7888887776777778888888999999998644 32 222222 222 3222221111112458899999999
Q ss_pred cCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 161 DLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 161 ~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
+.. --+++.++.+.+..++.+|...++.+..|.|..+.
T Consensus 193 ~~~-rvii~~~~~~~~~~ll~~A~~~gm~~~~yv~i~~d 230 (387)
T cd06386 193 ASE-RVVIMCAGADTIRSIMLAAHRRGLTSGDYIFFNIE 230 (387)
T ss_pred hcC-cEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence 988 77778889999999999999999999999998873
No 30
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=93.18 E-value=0.41 Score=44.31 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=74.9
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhc-----cCCcc--ccccCCCc-c-hhH-HHH
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQ-----NIPTR--HIIAPVED-S-RSV-KRQ 155 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~-----~~p~r--h~~~~~~~-~-~~~-~~~ 155 (202)
..+|-+.+.|+ .....++.+++...|-+..++++|+.+.. .--..|++ ++... .+...+.+ . ... ..+
T Consensus 112 ~~~y~~~~rp~-~~~~~ai~~li~~f~W~~v~i~~d~~~~~-~~l~~l~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~ 189 (400)
T cd06391 112 NDDYTLSVRPP-VYLNDVILRVVTEYAWQKFIIFYDTDYDI-RGIQEFLDKVSQQGMDVALQKVENNINKMITGLFRTMR 189 (400)
T ss_pred cccceEEecCh-HHHHHHHHHHHHHcCCcEEEEEEeCCccH-HHHHHHHHHHHHcCCeEEEEecCcchhhhhHHHHHHHH
Confidence 45677777765 44557789999999999999999988774 22223331 33221 11111000 0 011 225
Q ss_pred Hhhccc--CceeeeeeecchhhHHHHHhhhhhhhcccccceeEEeec
Q psy12232 156 LFRFKD--LDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAITL 200 (202)
Q Consensus 156 ~~~~~~--~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (202)
++.|+. -+...+.+-++.+.+..+|..|...++.|++|.|..-+.
T Consensus 190 ~~~l~~~~~~~rviVl~~~~~~~~~ll~~a~~~gm~~~~y~wi~t~~ 236 (400)
T cd06391 190 IEELNRYRDTLRRAILVMNPATAKSFITEVVETNLVAFDCHWIIINE 236 (400)
T ss_pred HHHHHhhcccccEEEEECCcHHHHHHHHHHHHcCCCCCCeEEEEeCc
Confidence 555554 234778888999999999999999999999999998665
No 31
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=93.16 E-value=0.058 Score=46.21 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=22.9
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
.+.+++.+||..+|.+||++.+|+..
T Consensus 242 ~~~~li~~~l~~~p~~Rp~~~~il~~ 267 (307)
T cd06607 242 YFRNFVDSCLQKIPQDRPSSEELLKH 267 (307)
T ss_pred HHHHHHHHHhcCChhhCcCHHHHhcC
Confidence 36789999999999999999998753
No 32
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=92.40 E-value=0.42 Score=43.61 Aligned_cols=115 Identities=12% Similarity=0.183 Sum_probs=81.8
Q ss_pred ccccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccc---hhhhhhhccC----CccccccC-CCcchhHHHHH
Q psy12232 85 EQMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFD---HKYKSLLQNI----PTRHIIAP-VEDSRSVKRQL 156 (202)
Q Consensus 85 ~~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~---~ky~~ll~~~----p~rh~~~~-~~~~~~~~~~~ 156 (202)
.+.+|.++..|+-..-..++.+++..-|=+-.+++++..=..+ ..-+.++++. -.+.++.. ..+..++...+
T Consensus 107 ~~~p~flr~~Psd~~q~~Ai~~Ii~~f~W~~v~iV~~~~~g~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 186 (362)
T cd06378 107 DSGSTFLQFGPSIEQQAAVMLKIMEEYDWHAFSVVTSRFPGYDDFVSAVRTTVDNSFVGWELQSVLTLDMSDDDGDARTQ 186 (362)
T ss_pred CCCceEEEeCCCHHHHHHHHHHHHHHCCCeEEEEEEEcCCCHHHHHHHHHHHHhhcccceeEEEEEeeccCCCcchHHHH
Confidence 4567889999887778888999999999999888775531100 1112222211 01111111 11233477888
Q ss_pred hhcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 157 FRFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 157 ~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
+++++.+.--|.+-++.+.+..+++.|...++.|+.|.|.+=+
T Consensus 187 ~~lk~~~arViVl~~s~~~a~~if~~A~~~gm~g~~yvWI~t~ 229 (362)
T cd06378 187 RQLKKLESQVILLYCSKEEAEYIFRAARSAGLTGPGYVWIVPS 229 (362)
T ss_pred HHHHhcCCCEEEEECCHHHHHHHHHHHHHcCCcCCCeEEEecc
Confidence 9999999999999999999999999999999999999998744
No 33
>KOG1023|consensus
Probab=92.39 E-value=0.093 Score=50.61 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.3
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhh
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVT 35 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~ 35 (202)
.+..+|.+||..+|..||+|.++...+..+....
T Consensus 195 ~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~ 228 (484)
T KOG1023|consen 195 ELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGG 228 (484)
T ss_pred HHHHHHHHhcccChhhCccHHHHHhhhhhhcccc
Confidence 3678999999999999999999999998887754
No 34
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=92.19 E-value=0.09 Score=45.27 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=23.1
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
.+++++.+||..+|.+||++.+++.+
T Consensus 264 ~~~~li~~~l~~~P~~Rpt~~~ll~~ 289 (330)
T cd07834 264 EAIDLLEKMLVFDPKKRITADEALAH 289 (330)
T ss_pred HHHHHHHHHccCChhhCCCHHHHHhC
Confidence 36789999999999999999998854
No 35
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=91.82 E-value=0.14 Score=44.12 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.7
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
.+.+++.+||..+|.+||++.+++..
T Consensus 242 ~~~~li~~cl~~~P~~Rp~~~~ll~~ 267 (308)
T cd06634 242 YFRNFVDSCLQKIPQDRPTSEVLLKH 267 (308)
T ss_pred HHHHHHHHHhhCCcccCCCHHHHhhC
Confidence 36789999999999999999988754
No 36
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=91.18 E-value=0.89 Score=41.05 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=76.2
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcce-eecccc-c-------ccchhhhhhhc-cCCccccccCCCcchhHHHHHh
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAG-ILFDDS-F-------IFDHKYKSLLQ-NIPTRHIIAPVEDSRSVKRQLF 157 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Ag-i~~d~~-f-------~~~~ky~~ll~-~~p~rh~~~~~~~~~~~~~~~~ 157 (202)
+|++.+.|+......++..++...|-+.-+ |++++. + .+++-.+.+-+ ++......-.-.+..++..+|+
T Consensus 118 ~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~ 197 (405)
T cd06385 118 ATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLIYSDNKVDDRPCYFAMEGLYMELKKNNITVVDLVFEEDDLINYTTLLQ 197 (405)
T ss_pred cceEEecCchHHHHHHHHHHHHhCCCeEEEEEEEecCcccccchHHHHHHHHHHHHhCCeEEEEeeccCCchhhHHHHHH
Confidence 466788887777777777788888888755 555432 2 35565555533 3433332111013568889999
Q ss_pred hcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEe
Q psy12232 158 RFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAI 198 (202)
Q Consensus 158 ~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (202)
++++.. -=+++.|.......++..|...++.+..|.|...
T Consensus 198 ~ik~~~-~iii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~ 237 (405)
T cd06385 198 DIKQKG-RVIYVCCSPDIFRRLMLQFWREGLPSEDYVFFYI 237 (405)
T ss_pred HHhhcc-eEEEEeCCHHHHHHHHHHHHHcCCCCCcEEEEEe
Confidence 998865 4556669999999999999999999999999865
No 37
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=91.16 E-value=0.11 Score=45.23 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=22.9
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
.+.++|.+||+.+|.+|||+.+++..
T Consensus 267 ~~~~li~~~l~~dP~~Rpt~~e~l~h 292 (336)
T cd07849 267 KALDLLDKMLTFNPHKRITVEEALAH 292 (336)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 36789999999999999999988755
No 38
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=90.40 E-value=0.17 Score=43.56 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=21.7
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+.+++.+||..+|.+|||+.+++.
T Consensus 266 ~~~li~~~l~~~P~~Rpt~~e~l~ 289 (338)
T cd07859 266 ALRLLERLLAFDPKDRPTAEEALA 289 (338)
T ss_pred HHHHHHHHcCcCcccCCCHHHHhc
Confidence 578999999999999999998874
No 39
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=90.12 E-value=1.1 Score=38.58 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=71.1
Q ss_pred ceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhccCCc--cccccCC--CcchhHHHHHhhcccCce
Q psy12232 89 YLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQNIPT--RHIIAPV--EDSRSVKRQLFRFKDLDI 164 (202)
Q Consensus 89 YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~~~p~--rh~~~~~--~~~~~~~~~~~~~~~~d~ 164 (202)
|...+.|+....-.++..++...+-...++++++... ....+.+++..-- ..+-... ...+++..+|.+++....
T Consensus 103 ~~~~~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~-~~~l~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~ 181 (324)
T cd06368 103 FTINLYPSMRDLSDALLDLIKYFGWRKFVYIYDSDEG-LLRLQELLDALSPKGIQVTVRRLDDDTDMYRPLLKEIKREKE 181 (324)
T ss_pred ceEEecCCHHHHHHHHHHHHHhcCCCEEEEEECCcHh-HHHHHHHHHhhccCCceEEEEEecCCchHHHHHHHHHhhccC
Confidence 4444444432333445556777777888999987642 1222333332110 0111111 123479999999999887
Q ss_pred eeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 165 VNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 165 ~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
.-.++.+..+....++..|....+.+..|.|...+
T Consensus 182 d~Vi~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~ 216 (324)
T cd06368 182 RRIILDCSPERLKEFLEQAVEVGMMSEYYHYILTN 216 (324)
T ss_pred ceEEEECCHHHHHHHHHHHHHhccccCCcEEEEcc
Confidence 77788999999999999999999999999998754
No 40
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=90.07 E-value=0.21 Score=43.18 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=24.0
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSKLD 29 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~Le 29 (202)
+.+++.+||+.+|.+||++.+++...-
T Consensus 253 l~~li~~~l~~~p~~Rpt~~~il~~~~ 279 (317)
T cd06635 253 FRNFVDSCLQKIPQDRPTSEELLKHMF 279 (317)
T ss_pred HHHHHHHHccCCcccCcCHHHHHhChh
Confidence 678999999999999999999987654
No 41
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=89.69 E-value=0.16 Score=43.46 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=23.6
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLD 29 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le 29 (202)
.+.+++.+||+.+|.+||++.++.+.|+
T Consensus 245 ~~~~li~~~l~~~P~~R~~~~~~~~ll~ 272 (305)
T cd05609 245 DAQDLISRLLRQNPLERLGTGGAFEVKQ 272 (305)
T ss_pred HHHHHHHHHhccChhhccCccCHHHHHh
Confidence 3789999999999999999976666554
No 42
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=89.57 E-value=0.26 Score=42.89 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=23.2
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
.+.+++.+||+.+|.+|||+.+++..
T Consensus 270 ~l~~li~~~l~~~P~~Rps~~~il~~ 295 (337)
T cd07852 270 DALDLLKKLLVFNPNKRLTAEEALEH 295 (337)
T ss_pred HHHHHHHHhccCCcccccCHHHHhhC
Confidence 36789999999999999999999864
No 43
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=89.50 E-value=0.19 Score=43.83 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
+.+++++||+.+|.+|||+.+++.+
T Consensus 267 ~~~li~~~l~~~P~~Rps~~ell~h 291 (337)
T cd07858 267 AIDLLEKMLVFDPSKRITVEEALAH 291 (337)
T ss_pred HHHHHHHHhcCChhhccCHHHHHcC
Confidence 5689999999999999999998866
No 44
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=88.82 E-value=1.5 Score=38.87 Aligned_cols=114 Identities=12% Similarity=0.189 Sum_probs=74.4
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccch---hhhhhhc--cCC--cccccc-CCCcchhHHHHHh
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDH---KYKSLLQ--NIP--TRHIIA-PVEDSRSVKRQLF 157 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~---ky~~ll~--~~p--~rh~~~-~~~~~~~~~~~~~ 157 (202)
...|.+...|+....-.++..++...|-+..+++++++=.-.. ..+.+++ ++. ...... ......+....+.
T Consensus 109 ~~~~~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~ 188 (362)
T cd06367 109 IHSLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLR 188 (362)
T ss_pred cccceEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeEEeccCCCcchHHHHH
Confidence 4457778888777777778889999999988999975422011 1122233 111 111110 1111224556666
Q ss_pred hcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 158 RFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 158 ~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
++++...--+++.|+......++..|...++.++.|.|..-.
T Consensus 189 ~l~~~~~~vivl~~~~~~~~~il~~a~~~g~~~~~~~wI~~~ 230 (362)
T cd06367 189 QLKKLESRVILLYCSKEEAERIFEAAASLGLTGPGYVWIVGE 230 (362)
T ss_pred HHHhcCCcEEEEeCCHHHHHHHHHHHHHcCCCCCCcEEEECc
Confidence 666665556688899999999999999999999999998754
No 45
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=88.82 E-value=1.7 Score=37.79 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=73.0
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccccchhhhhhhccCCc---cccccCCCcchhHHHHHhhcccCce
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQNIPT---RHIIAPVEDSRSVKRQLFRFKDLDI 164 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~~~p~---rh~~~~~~~~~~~~~~~~~~~~~d~ 164 (202)
+|.+...|+....-..+..++...+....++++++.= ..-..+.+++..-. ...........++..+|.+++..+.
T Consensus 104 ~~~fr~~p~~~~~~~a~~~~~~~~~w~~vavl~~~~~-~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~ 182 (327)
T cd06382 104 QFTINLYPSNADLSRAYADIVKSFNWKSFTIIYESAE-GLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSGD 182 (327)
T ss_pred cceEEeCCCHHHHHHHHHHHHHhcCCcEEEEEecChH-HHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhcCc
Confidence 4666665554444444555666677777788888652 11222233331100 0011111112289999999999998
Q ss_pred eeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 165 VNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 165 ~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
..+++.|.......++..|....+.+..|.|....
T Consensus 183 d~vv~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~ 217 (327)
T cd06382 183 NRIIIDCSADILIELLKQAQQVGMMSEYYHYIITN 217 (327)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCccccceEEEEec
Confidence 88899999999999999999999999999997643
No 46
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=87.96 E-value=1.9 Score=38.71 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=70.9
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeeccc-ccc------cchhhhhhhc--cCCccccccCCCc--chhHHHHH
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFDD-SFI------FDHKYKSLLQ--NIPTRHIIAPVED--SRSVKRQL 156 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~-~f~------~~~ky~~ll~--~~p~rh~~~~~~~--~~~~~~~~ 156 (202)
+|++...|+....-..+..++...+....++++++ .+. .-...+..++ ++...... -... ..+...+|
T Consensus 117 ~~~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~d~~~~l 195 (396)
T cd06373 117 STLTRTGPSYTKLGEFVLALHEHFNWSRAALLYHDDKNDDRPCYFTLEGVYTVLKEENITVSDFP-FDEDKELDDYKELL 195 (396)
T ss_pred CceeeccccHHHHHHHHHHHHHHcCCeEEEEEEECCCCCcchHHHHHHHHHHHHhhcCceeeEEe-ecCCccccCHHHHH
Confidence 45777777665555566667777888888999764 331 1122333333 22221111 1111 26788888
Q ss_pred hhcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEe
Q psy12232 157 FRFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAI 198 (202)
Q Consensus 157 ~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (202)
++++.-. --+++.|.......++..|...++.+..|-|..+
T Consensus 196 ~~ik~~~-~vii~~~~~~~~~~~~~qa~~~g~~~~~yv~i~~ 236 (396)
T cd06373 196 RDISKKG-RVVIMCASPDTVREIMLAAHRLGLTSGEYVFFNI 236 (396)
T ss_pred HHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 8887755 5556778888999999999999999999988764
No 47
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=87.91 E-value=2 Score=38.84 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=71.5
Q ss_pred ceEeeCCCCCChHHHHHHHHHHhcCC-cceeeccc-ccc-------cchhhhhhhc-cCCccccccCCCcchhHHHHHhh
Q psy12232 89 YLIQVNPPGDILPEVIRAIILMQNIT-DAGILFDD-SFI-------FDHKYKSLLQ-NIPTRHIIAPVEDSRSVKRQLFR 158 (202)
Q Consensus 89 YLlqv~pp~~~~pe~vr~~~~~~nit-~Agi~~d~-~f~-------~~~ky~~ll~-~~p~rh~~~~~~~~~~~~~~~~~ 158 (202)
|.+.+.|+.......+..++...+-+ .+++++++ +.. ...-.+.+-+ ++..........+..++..+|++
T Consensus 119 ~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaiiy~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ 198 (399)
T cd06384 119 TTVRTGPSTTKLGEFVNHLHEHFNWTSRAALLYLDLKTDDRPHYFISEGVFLALQEENANVSAHPYHIEKNSDIIEIIQF 198 (399)
T ss_pred ceEEecCcHHHHHHHHHHHHHhCCCcEEEEEEEecCCccCCcceEehHHHHHHHHhcCceEEEEEEeccchhhHHHHHHH
Confidence 38888787666666677788888888 57788743 222 2233333322 33222111111135788899999
Q ss_pred cccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 159 FKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 159 ~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
+|. +.-=+++.|.......++..|....+.+..|.|..+.
T Consensus 199 ik~-~~~vIi~~~~~~~~~~i~~qa~~~g~~~~~y~~i~~d 238 (399)
T cd06384 199 IKQ-NGRIVYICGPLETFLEIMLQAQREGLTPGDYVFFYLD 238 (399)
T ss_pred Hhh-cccEEEEeCCchHHHHHHHHHHHcCCCCCcEEEEEeh
Confidence 886 5433344699899999999999999999999997543
No 48
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=87.27 E-value=0.32 Score=42.64 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=21.4
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+.+++.+||..+|.+|||+.+|+.
T Consensus 274 l~dli~~~l~~~P~~Rpt~~ell~ 297 (343)
T cd07851 274 AIDLLEKMLVLDPDKRITAAEALA 297 (343)
T ss_pred HHHHHHHhCCCChhhCCCHHHHhc
Confidence 568999999999999999998764
No 49
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=87.27 E-value=0.33 Score=41.94 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+.+++.+||+.+|.+||++.+++.
T Consensus 249 l~~li~~~l~~~P~~Rp~~~~~l~ 272 (313)
T cd06633 249 FRGFVDYCLQKIPQERPASAELLR 272 (313)
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 668999999999999999997773
No 50
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=86.85 E-value=0.44 Score=41.68 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.8
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
.+.++|.+||..+|.+|||..+++.
T Consensus 263 ~~~~li~~~l~~~P~~R~t~~ell~ 287 (328)
T cd07856 263 SAIDLLEKMLVFDPQKRISAAEALA 287 (328)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHhc
Confidence 4679999999999999999887753
No 51
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=86.56 E-value=0.38 Score=42.20 Aligned_cols=24 Identities=4% Similarity=0.173 Sum_probs=21.3
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+.+++.+||..+|.+|||+.+++.
T Consensus 276 ~~~li~~~L~~dP~~R~t~~ell~ 299 (342)
T cd07854 276 ALDFLEQILTFNPMDRLTAEEALM 299 (342)
T ss_pred HHHHHHHHhCCCchhccCHHHHhC
Confidence 568999999999999999998864
No 52
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=86.56 E-value=0.41 Score=41.62 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.4
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
.+.+++.+||+.+|.+||++.+++.+
T Consensus 269 ~~~~li~~~l~~~P~~Rpt~~~~l~~ 294 (334)
T cd07855 269 EALDLLSQMLQFDPEERITVEQALQH 294 (334)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHhC
Confidence 35689999999999999999987753
No 53
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=86.54 E-value=0.44 Score=45.02 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.3
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
.+.+++.+||+.+|.+||++.+++.+
T Consensus 272 ~l~~li~~~L~~dP~~RPs~~ell~~ 297 (496)
T PTZ00283 272 EMQEIVTALLSSDPKRRPSSSKLLNM 297 (496)
T ss_pred HHHHHHHHHcccChhhCcCHHHHHhC
Confidence 46789999999999999999998764
No 54
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=86.53 E-value=2.3 Score=39.52 Aligned_cols=109 Identities=13% Similarity=0.244 Sum_probs=71.0
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeec-ccccccch--hhhhhhc---cCCcc--ccccCCCcchhHHHHHhhc
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILF-DDSFIFDH--KYKSLLQ---NIPTR--HIIAPVEDSRSVKRQLFRF 159 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~-d~~f~~~~--ky~~ll~---~~p~r--h~~~~~~~~~~~~~~~~~~ 159 (202)
+|.+...|+....-.++..++...|-...++++ ++.|...- ..+..++ .+... -.+.-.....++..+|+++
T Consensus 147 ~~ffR~~p~d~~~~~ai~~~i~~~~w~~Vaii~~~~~yg~~~~~~~~~~~~~~g~~~v~~~~~i~~~~~~~d~~~~l~~i 226 (463)
T cd06376 147 DFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGNYGESGVEAFTQISREAGGVCIAQSIKIPREPRPGEFDKIIKRL 226 (463)
T ss_pred CceEEccCCHHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCHHHHHHHHHHH
Confidence 567777777666666677788888988889998 45454111 0111111 11111 1111122357888999999
Q ss_pred cc-CceeeeeeecchhhHHHHHhhhhhhhcccccceeEE
Q psy12232 160 KD-LDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHA 197 (202)
Q Consensus 160 ~~-~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (202)
++ -+..-.++.|.......++..|...++.| +|-|..
T Consensus 227 k~~~~~~vIvl~~~~~~~~~ll~~a~~~~~~g-~~~wig 264 (463)
T cd06376 227 LETPNARAVIIFANEDDIRRVLEAAKRANQVG-HFLWVG 264 (463)
T ss_pred hccCCCeEEEEecChHHHHHHHHHHHhcCCcC-ceEEEE
Confidence 76 46666788899999999999999888888 477754
No 55
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=85.85 E-value=4.6 Score=35.28 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=73.4
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeeccc-ccccc--hhhhhhhcc--CCccccccCCC---cchhHHHHHh
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDD-SFIFD--HKYKSLLQN--IPTRHIIAPVE---DSRSVKRQLF 157 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~-~f~~~--~ky~~ll~~--~p~rh~~~~~~---~~~~~~~~~~ 157 (202)
..+|.+...|+.......+..++...+.+..++++.+ .|..+ ...+..++. +...... .+. ...++..++.
T Consensus 108 ~~~~~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~d~~~~l~ 186 (350)
T cd06366 108 QYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRA-AFPPSANDDDITDALK 186 (350)
T ss_pred cCCceEEcccchHhHHHHHHHHHHHCCCcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEe-ccCCCCChhHHHHHHH
Confidence 3457777777666666666667777787877777753 33311 122333331 2111111 111 1478999999
Q ss_pred hcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEe
Q psy12232 158 RFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAI 198 (202)
Q Consensus 158 ~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (202)
++++.+--=+++.+.......++.+|...++.+++|.|...
T Consensus 187 ~i~~~~~dvvi~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 227 (350)
T cd06366 187 KLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILT 227 (350)
T ss_pred HHhcCCCeEEEEECChHHHHHHHHHHHHcCCcCCCEEEEEC
Confidence 99876655567788889999999999999999999988753
No 56
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=85.63 E-value=0.46 Score=41.67 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
+-+++.+||+.+|.+||++.+++.+
T Consensus 273 ~~~li~~~l~~dP~~R~~~~e~l~h 297 (342)
T cd07879 273 AVDLLEKMLELDVDKRLTATEALEH 297 (342)
T ss_pred HHHHHHHHcCCChhhCcCHHHHhcC
Confidence 5589999999999999999998754
No 57
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=84.77 E-value=0.72 Score=40.09 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=21.5
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLV 25 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv 25 (202)
.+.+++.+||+.+|.+|||+.+++
T Consensus 267 ~~~~li~~~l~~~P~~R~t~~~ll 290 (332)
T cd07857 267 LALDLLEKLLAFDPTKRISVEEAL 290 (332)
T ss_pred HHHHHHHHHccCCcccCCCHHHHh
Confidence 367899999999999999999876
No 58
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=84.18 E-value=0.66 Score=40.84 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=22.1
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
+.+++.+||..+|.+|||..+++.+
T Consensus 291 ~~~li~~mL~~dP~~R~t~~e~l~h 315 (359)
T cd07876 291 ARDLLSKMLVIDPDKRISVDEALRH 315 (359)
T ss_pred HHHHHHHHhccCcccCCCHHHHhcC
Confidence 5689999999999999999988753
No 59
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=83.77 E-value=0.75 Score=42.94 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.6
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
.+.+++.+||..+|.+||++.+++.
T Consensus 298 ~~~~li~~~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 298 GMKALLDPLLSKNPALRPTTQQLLH 322 (478)
T ss_pred HHHHHHHHHhccChhhCcCHHHHHh
Confidence 4789999999999999999999864
No 60
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=83.35 E-value=0.7 Score=40.53 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=22.3
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
+.+++.+|+..+|.+|||..+++.+
T Consensus 287 ~~~li~~mL~~dP~~Rps~~ell~h 311 (355)
T cd07874 287 ARDLLSKMLVIDPAKRISVDEALQH 311 (355)
T ss_pred HHHHHHHHhcCCchhcCCHHHHhcC
Confidence 5789999999999999999988754
No 61
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=82.51 E-value=5.1 Score=35.58 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=69.7
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeeccccc--ccc--hhhhhhhc--cCCccccccCCC-c--chhHHHHH
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSF--IFD--HKYKSLLQ--NIPTRHIIAPVE-D--SRSVKRQL 156 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f--~~~--~ky~~ll~--~~p~rh~~~~~~-~--~~~~~~~~ 156 (202)
..+|++.+.|+....-..+..++...+...+++++++.. .-. .-.+..++ .+....... +. . ..++..+|
T Consensus 110 ~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~-~~~~~~~~d~~~~l 188 (389)
T cd06352 110 EYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVF-MEDNSGAEDLLEIL 188 (389)
T ss_pred cCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEE-ecCCccchhHHHHH
Confidence 346778877776554444555566777778788886654 311 11112222 111111100 11 1 46788888
Q ss_pred hhcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEe
Q psy12232 157 FRFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAI 198 (202)
Q Consensus 157 ~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (202)
++++..+ --+++.+.......+|..|....+++.+|-|...
T Consensus 189 ~~i~~~~-~vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~ 229 (389)
T cd06352 189 QDIKRRS-RIIIMCGSSEDVRELLLAAHDLGLTSGDYVFILI 229 (389)
T ss_pred HHhhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 8888776 4466777778999999999999999888888753
No 62
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=81.49 E-value=0.99 Score=39.64 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=21.6
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+-+++.+||+.+|.+|||+.+++.
T Consensus 287 ~~~li~~~L~~dP~~R~t~~eiL~ 310 (353)
T cd07850 287 ARDLLSKMLVIDPEKRISVDDALQ 310 (353)
T ss_pred HHHHHHHHcCCChhhCcCHHHHhc
Confidence 458999999999999999998874
No 63
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=80.91 E-value=8.8 Score=31.35 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=69.2
Q ss_pred ccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccccc---cchhhhhhhcc--CCccccccCCCcchhHHHHHhhccc
Q psy12232 87 MKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFI---FDHKYKSLLQN--IPTRHIIAPVEDSRSVKRQLFRFKD 161 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~---~~~ky~~ll~~--~p~rh~~~~~~~~~~~~~~~~~~~~ 161 (202)
.+|...+.|+....-..+...+...+....++++.+.-. +-.-++..++. +.......--.+.++...+++++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~ 189 (299)
T cd04509 110 YPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKA 189 (299)
T ss_pred CCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHh
Confidence 457788877766666666677777888887888776531 22334444442 2221111111123567777777766
Q ss_pred CceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 162 LDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 162 ~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
....=.|+.+.......++.++....+. .++.|...+
T Consensus 190 ~~~~~v~~~~~~~~~~~~~~~~~~~g~~-~~~~~i~~~ 226 (299)
T cd04509 190 AKPDVIVLCGSGEDAATILKQAAEAGLT-GGYPILGIT 226 (299)
T ss_pred cCCCEEEEcccchHHHHHHHHHHHcCCC-CCCcEEecc
Confidence 5433346666668888999999988777 678887654
No 64
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=79.38 E-value=9.8 Score=34.07 Aligned_cols=111 Identities=13% Similarity=0.209 Sum_probs=65.6
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeeccc--c--cc-cchhhhhhhc----cCCccccccCCCcchhHHHHHhh
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFDD--S--FI-FDHKYKSLLQ----NIPTRHIIAPVEDSRSVKRQLFR 158 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~--~--f~-~~~ky~~ll~----~~p~rh~~~~~~~~~~~~~~~~~ 158 (202)
++.+...|+......++..++...|-+..+++++. . +. ++...+.+-+ ++.......-..+..+...++.+
T Consensus 112 ~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~l~ 191 (391)
T cd06372 112 DTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGGSSRDSSWDEVDELWKAVENQLKFHFNITATVRYSSSNPDLLQEKLR 191 (391)
T ss_pred CceEEecCchhhHHHHHHHHHHHCCCeEEEEEEeccccchhhhHHHHHHHHHHHHhhCEEEEEEEecCCCChHHHHHHHH
Confidence 34555666666667778888888899988988732 2 21 1222222211 11111111001122344444434
Q ss_pred cccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEEe
Q psy12232 159 FKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAI 198 (202)
Q Consensus 159 ~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (202)
.+..+.-=+++.+.......++..|...++.+..|.|..+
T Consensus 192 ~~~~~~~vii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~ 231 (391)
T cd06372 192 YISSVARVIILICSSEDAKAILQAAEKLGLMKGKFVFFLL 231 (391)
T ss_pred hhhccceEEEEEcChHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 4333333367778899999999999999999989999874
No 65
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=79.29 E-value=1.1 Score=39.79 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=22.4
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
++.+++.+|++.+|.+|||..+++.+
T Consensus 263 ~~~~li~~mL~~dP~~R~t~~e~l~h 288 (372)
T cd07853 263 EAVHLLCRMLVFDPDKRISAADALAH 288 (372)
T ss_pred HHHHHHHHhCCCChhhCcCHHHHhcC
Confidence 35689999999999999999988753
No 66
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=77.55 E-value=10 Score=32.92 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=69.8
Q ss_pred ccceEeeCCCCCChHHHHHHHHHHhcCCcceeeccccc-c--cchhhhhhhc--cCCccccccCCC-c--chhHHHHHhh
Q psy12232 87 MKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSF-I--FDHKYKSLLQ--NIPTRHIIAPVE-D--SRSVKRQLFR 158 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f-~--~~~ky~~ll~--~~p~rh~~~~~~-~--~~~~~~~~~~ 158 (202)
.+|.+...|+.......+..+++..+.+..++++.+.- . .--.++..++ ++-..... .+. . ..+...++.+
T Consensus 134 ~~~~fr~~p~~~~~~~a~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~-~~~~~~~~~d~~~~l~~ 212 (348)
T cd06350 134 FPSFFRTVPSDTSQALAIVALLKHFGWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVE-AIPPSSTEEDIKRILKK 212 (348)
T ss_pred cCCeeEecCCcHHHHHHHHHHHHHCCCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEE-EccCCCcHHHHHHHHHH
Confidence 35777777776666677777888889999888886542 1 0011112222 11111111 111 1 3688999999
Q ss_pred cccCceeeeeeecchhhHHHHHhhhhhhhccccccee
Q psy12232 159 FKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAW 195 (202)
Q Consensus 159 ~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~ 195 (202)
+++.+.--.++.+.......++.+|....+ +.++-|
T Consensus 213 l~~~~~~vvv~~~~~~~~~~~~~~a~~~g~-~~~~~i 248 (348)
T cd06350 213 LKSSTARVIVVFGDEDDALRLFCEAYKLGM-TGKYWI 248 (348)
T ss_pred HHhCCCcEEEEEeCcHHHHHHHHHHHHhCC-CCeEEE
Confidence 999876556777888889999999999888 667655
No 67
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=75.31 E-value=1.2 Score=38.56 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=18.4
Q ss_pred hHHHHHHHhchhcCCCCCCH
Q psy12232 2 SSYELMRDCWSYVASERPEF 21 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF 21 (202)
.+.+++.+||..+|.+||+.
T Consensus 222 ~~~~li~~~l~~dP~~R~s~ 241 (318)
T cd05570 222 EAKSILKSFLTKNPEKRLGC 241 (318)
T ss_pred HHHHHHHHHccCCHHHcCCC
Confidence 46789999999999999998
No 68
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=74.84 E-value=2.8 Score=36.81 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=21.4
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+.+++.+|.+.+|.+|||..+++.
T Consensus 274 ~~~li~~~l~~dP~~R~t~~~~l~ 297 (343)
T cd07880 274 AVNVLEKMLVLDAESRITAAEALA 297 (343)
T ss_pred HHHHHHHHcCCChhhCCCHHHHhc
Confidence 568999999999999999998773
No 69
>PTZ00036 glycogen synthase kinase; Provisional
Probab=72.68 E-value=1.9 Score=39.82 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
+.+|+.+||..+|.+|||..+++.+
T Consensus 327 ~~~li~~~L~~dP~~R~ta~e~l~h 351 (440)
T PTZ00036 327 AINFISQFLKYEPLKRLNPIEALAD 351 (440)
T ss_pred HHHHHHHHCCCChhHCcCHHHHhCC
Confidence 5689999999999999999887643
No 70
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=71.01 E-value=1.5 Score=37.73 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=21.1
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKL 28 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~L 28 (202)
.+.+++.+||..+|.+||++..+.+.|
T Consensus 219 ~~~~li~~~L~~dp~~R~~~~~~~e~l 245 (312)
T cd05585 219 DAKDLLIGLLSRDPTRRLGYNGAQEIK 245 (312)
T ss_pred HHHHHHHHHcCCCHHHcCCCCCHHHHH
Confidence 356899999999999999876544433
No 71
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=70.64 E-value=2.5 Score=36.75 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=21.3
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+.+|+.+|+..+|.+|||..+++.
T Consensus 274 ~~~li~~mL~~dp~~R~s~~ell~ 297 (343)
T cd07878 274 AIDLLEKMLVLDSDKRISASEALA 297 (343)
T ss_pred HHHHHHHHcCCChhhCCCHHHHhc
Confidence 458999999999999999988774
No 72
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=70.43 E-value=2.8 Score=36.40 Aligned_cols=26 Identities=4% Similarity=0.097 Sum_probs=22.7
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
++.+++.+||..+|.+||++.++..+
T Consensus 232 ~~~~li~~~l~~~~~rr~s~~~ll~h 257 (333)
T cd05600 232 EAWDLITKLINDPSRRFGSLEDIKNH 257 (333)
T ss_pred HHHHHHHHHhhChhhhcCCHHHHHhC
Confidence 46789999999999999998888754
No 73
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=69.61 E-value=12 Score=34.07 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=67.6
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeecc-cccccc--hhhhhhhcc--CCccc--cccC-CCcchhHHHHHhhc
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFD-DSFIFD--HKYKSLLQN--IPTRH--IIAP-VEDSRSVKRQLFRF 159 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d-~~f~~~--~ky~~ll~~--~p~rh--~~~~-~~~~~~~~~~~~~~ 159 (202)
+|.+...|+....-.++..++...+.+..+++++ +.|.-+ ...+..|+. +.... .+.. .....++..++.++
T Consensus 151 ~~~fr~~~~~~~~~~al~~~l~~~~~k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i 230 (410)
T cd06363 151 PSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQI 230 (410)
T ss_pred CCeeEecCCcHHHHHHHHHHHHHCCCcEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHH
Confidence 4677777765555555666777778887788874 556632 122223331 11100 0000 01246899999999
Q ss_pred ccCceeeeeeecchhhHHHHHhhhhhhhcccc
Q psy12232 160 KDLDIVNYFILGRLQTIKMILDSANVNKFFGR 191 (202)
Q Consensus 160 ~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~ 191 (202)
+..+.--.++.|..+....++..|...++.++
T Consensus 231 ~~~~~dvIil~~~~~~~~~il~qa~~~g~~~~ 262 (410)
T cd06363 231 NQTKVNVIVVFASRQPAEAFFNSVIQQNLTGK 262 (410)
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHhcCCCCC
Confidence 99887778999999999999999998887654
No 74
>PLN00181 protein SPA1-RELATED; Provisional
Probab=69.37 E-value=3 Score=41.62 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.3
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
...++..||+.+|.+||++.+++.
T Consensus 241 ~~~~~~~~L~~~P~~Rps~~eil~ 264 (793)
T PLN00181 241 EASFCLWLLHPEPSCRPSMSELLQ 264 (793)
T ss_pred HHHHHHHhCCCChhhCcChHHHhh
Confidence 457889999999999999999864
No 75
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=68.36 E-value=3.1 Score=43.72 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.9
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
.+.+|+..||..+|.+||++.+++.
T Consensus 270 eL~dLI~~~L~~dPeeRPSa~QlL~ 294 (1021)
T PTZ00266 270 ELNILIKNLLNLSAKERPSALQCLG 294 (1021)
T ss_pred HHHHHHHHHhcCChhHCcCHHHHhc
Confidence 4789999999999999999999984
No 76
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=67.36 E-value=3.7 Score=35.43 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.3
Q ss_pred hHHHHHHHhchhcCCCCCCHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQ 23 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~e 23 (202)
.+.+++.+||+.+|.+||+..+
T Consensus 224 ~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 224 EAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred HHHHHHHHHhhcCHhHcCCCCC
Confidence 4678999999999999999655
No 77
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=65.15 E-value=3.6 Score=35.56 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.3
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
.+.+|+..|+. +|.+||++.++..
T Consensus 239 ~~~~li~~ll~-~p~~R~t~~~l~~ 262 (330)
T cd05601 239 DFLDLIQSLLC-GQKERLGYEGLCC 262 (330)
T ss_pred HHHHHHHHHcc-ChhhCCCHHHHhC
Confidence 35789999997 9999999998763
No 78
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=65.09 E-value=29 Score=31.33 Aligned_cols=95 Identities=11% Similarity=0.185 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCcceeecccc-cc---cchhhhhhhc-cCCccccccCCC-cchhHHHHHhhcccCceee-eeeecch--
Q psy12232 103 VIRAIILMQNITDAGILFDDS-FI---FDHKYKSLLQ-NIPTRHIIAPVE-DSRSVKRQLFRFKDLDIVN-YFILGRL-- 173 (202)
Q Consensus 103 ~vr~~~~~~nit~Agi~~d~~-f~---~~~ky~~ll~-~~p~rh~~~~~~-~~~~~~~~~~~~~~~d~~n-~f~~g~~-- 173 (202)
.+..++...+-...+++++++ |. +..-.+.+=+ +++..... .+. +..++..+|+++|+..-.. +++.+..
T Consensus 122 ~~~~~~~~~~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~-~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~~~ 200 (382)
T cd06371 122 VLFTVLRYFRWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVT-SMGPDEKGAREALKKVRSADRVRVVIMCMHSVL 200 (382)
T ss_pred HHHHHHHHCCCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEE-EecCCHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 455678888888889998765 31 2222222211 33332221 122 4679999999999755222 2233332
Q ss_pred ---hhHHHHHhhhhhhhcccccceeEEe
Q psy12232 174 ---QTIKMILDSANVNKFFGRKFAWHAI 198 (202)
Q Consensus 174 ---~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (202)
..+..++..|...++.+..|.|...
T Consensus 201 ~~~~~~~~i~~qa~~~Gm~~~~y~~i~~ 228 (382)
T cd06371 201 IGGEEQRLLLETALEMGMTDGRYVFIPY 228 (382)
T ss_pred cCcHHHHHHHHHHHHcCCcCCcEEEEEe
Confidence 4557899999999999999999854
No 79
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=65.00 E-value=16 Score=34.87 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=69.3
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceee-cccccccch--hhhhhhc--cCCcc--ccccCCCcchhHHHHHhhcc
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGIL-FDDSFIFDH--KYKSLLQ--NIPTR--HIIAPVEDSRSVKRQLFRFK 160 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~-~d~~f~~~~--ky~~ll~--~~p~r--h~~~~~~~~~~~~~~~~~~~ 160 (202)
+|.+...|+......++..+++..|.+..+++ .|+.|...- ..+..++ ++-.. -++....+..++..++.+++
T Consensus 162 p~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk 241 (510)
T cd06364 162 KSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQ 241 (510)
T ss_pred CCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677777766666677778888898886666 566675210 1112222 11111 01222124567888999999
Q ss_pred cCceeeeeeecchhhHHHHHhhhhhhhccccc
Q psy12232 161 DLDIVNYFILGRLQTIKMILDSANVNKFFGRK 192 (202)
Q Consensus 161 ~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~ 192 (202)
+....-.++.|.......++..|...++.|+-
T Consensus 242 ~~~a~vVvl~~~~~~~~~ll~qa~~~g~~~~i 273 (510)
T cd06364 242 NSTAKVIVVFSSGPDLEPLIKEIVRRNITGKI 273 (510)
T ss_pred hcCCeEEEEEeCcHHHHHHHHHHHHhCCCCcE
Confidence 87777778889999999999999998998863
No 80
>KOG0596|consensus
Probab=63.92 E-value=3.9 Score=40.78 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHhchhcCCCCCCHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLV 25 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv 25 (202)
+-++|+.|..++|.+||+..+|+
T Consensus 603 li~~mK~CL~rdPkkR~si~eLL 625 (677)
T KOG0596|consen 603 LIDVMKCCLARDPKKRWSIPELL 625 (677)
T ss_pred HHHHHHHHHhcCcccCCCcHHHh
Confidence 56899999999999999988765
No 81
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=63.90 E-value=4.8 Score=35.46 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.9
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+-+++.+|+..+|.+|||..+++.
T Consensus 294 ~~dll~~mL~~dP~~R~t~~e~L~ 317 (364)
T cd07875 294 ARDLLSKMLVIDASKRISVDEALQ 317 (364)
T ss_pred HHHHHHHhcCcCcccCCCHHHHhc
Confidence 457999999999999999987754
No 82
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=62.67 E-value=4 Score=35.60 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=17.1
Q ss_pred hHHHHHHHhchhcCCCCCC
Q psy12232 2 SSYELMRDCWSYVASERPE 20 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPt 20 (202)
.+.+++.+||..+|.+||+
T Consensus 241 ~~~~li~~~L~~dP~~R~~ 259 (329)
T PTZ00263 241 RARDLVKGLLQTDHTKRLG 259 (329)
T ss_pred HHHHHHHHHhhcCHHHcCC
Confidence 3678999999999999997
No 83
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=62.45 E-value=3.8 Score=35.83 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=17.3
Q ss_pred HHHHHHHhchhcCCCCCCH
Q psy12232 3 SYELMRDCWSYVASERPEF 21 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF 21 (202)
+.+++.+||..+|.+||+.
T Consensus 232 ~~~ll~~~L~~dP~~R~~~ 250 (329)
T cd05618 232 AASVLKSFLNKDPKERLGC 250 (329)
T ss_pred HHHHHHHHhcCCHHHcCCC
Confidence 5689999999999999994
No 84
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=61.38 E-value=4.3 Score=35.22 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=19.9
Q ss_pred hHHHHHHHhchhcCCCCC-----CHHHHH
Q psy12232 2 SSYELMRDCWSYVASERP-----EFIQLV 25 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RP-----tF~eLv 25 (202)
.+.+++.+||..+|.+|| +-.+|+
T Consensus 221 ~~~~li~~~L~~dP~~R~~~~~~~~~~ll 249 (323)
T cd05571 221 EAKSLLAGLLKKDPKQRLGGGPEDAKEIM 249 (323)
T ss_pred HHHHHHHHHccCCHHHcCCCCCCCHHHHH
Confidence 467899999999999999 555554
No 85
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=60.74 E-value=5.1 Score=35.19 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.5
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
+.+++.+|++.+|.+||+..+++.+
T Consensus 276 ~~~li~~~L~~dp~~R~t~~e~l~h 300 (345)
T cd07877 276 AVDLLEKMLVLDSDKRITAAQALAH 300 (345)
T ss_pred HHHHHHHHcCCChhhcCCHHHHhcC
Confidence 5689999999999999998877644
No 86
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=59.40 E-value=4.9 Score=34.76 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=16.5
Q ss_pred HHHHHHHhchhcCCCCCC
Q psy12232 3 SYELMRDCWSYVASERPE 20 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPt 20 (202)
+.+++.+||..+|.+||+
T Consensus 238 ~~~li~~~l~~dp~~R~~ 255 (332)
T cd05614 238 AQDLLHKLLRKDPKKRLG 255 (332)
T ss_pred HHHHHHHHcCCCHHHcCC
Confidence 578999999999999994
No 87
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=58.75 E-value=34 Score=31.32 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=66.0
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeecccc-cccc--hhhhhhhc--cCCcccc--ccCCCcchhHHHHHhhcc
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDS-FIFD--HKYKSLLQ--NIPTRHI--IAPVEDSRSVKRQLFRFK 160 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~-f~~~--~ky~~ll~--~~p~rh~--~~~~~~~~~~~~~~~~~~ 160 (202)
+|.+...|+......++..++...+.+..+++++++ |.-. -..+..++ ++..... +....+..++..++++++
T Consensus 147 ~~~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~d~~~~l~~l~ 226 (452)
T cd06362 147 DYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSATEEEFDNIIRKLL 226 (452)
T ss_pred CCEEEecCChHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 577777776665556666677788888888888754 4311 11122222 2222211 111113467888888886
Q ss_pred c---CceeeeeeecchhhHHHHHhhhhhhhcccccceeEE
Q psy12232 161 D---LDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHA 197 (202)
Q Consensus 161 ~---~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (202)
. .||+ ++.|.......++.+|...++.| +|-|..
T Consensus 227 ~~~~a~vi--il~~~~~~~~~~~~~a~~~g~~~-~~~~i~ 263 (452)
T cd06362 227 SKPNARVV--VLFCREDDIRGLLAAAKRLNAEG-HFQWIA 263 (452)
T ss_pred hcCCCeEE--EEEcChHHHHHHHHHHHHcCCcC-ceEEEE
Confidence 5 3544 67788888899999999888874 466654
No 88
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=58.43 E-value=5.8 Score=34.37 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=18.6
Q ss_pred hHHHHHHHhchhcCCCCCCHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQ 23 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~e 23 (202)
.+.+++.+||..+|.+||++.+
T Consensus 227 ~~~~li~~~L~~dP~~R~~~~~ 248 (324)
T cd05589 227 EAISIMRRLLRRNPERRLGSGE 248 (324)
T ss_pred HHHHHHHHHhhcCHhHcCCCCC
Confidence 4678999999999999996543
No 89
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=58.41 E-value=33 Score=32.10 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=64.8
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeeccc-ccccchhhhhh---hc--cCCc--cccccCCCcchhHHHHHhhc
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFDD-SFIFDHKYKSL---LQ--NIPT--RHIIAPVEDSRSVKRQLFRF 159 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~-~f~~~~ky~~l---l~--~~p~--rh~~~~~~~~~~~~~~~~~~ 159 (202)
+|.+...|+....-.++..++...|.+..++++++ .|... -.+.+ ++ ++-. .-.+....+..++..+++++
T Consensus 149 ~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~~~~~yG~~-~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l 227 (458)
T cd06375 149 DYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGET-GIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKL 227 (458)
T ss_pred CCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEEeCchHHHH-HHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHH
Confidence 67788888776666667778888899888999863 44411 11111 11 1111 11121111346778888887
Q ss_pred cc-CceeeeeeecchhhHHHHHhhhhhhhcccccceeE
Q psy12232 160 KD-LDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWH 196 (202)
Q Consensus 160 ~~-~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (202)
+. .+..=.++.|.......++..|...++. +.|.
T Consensus 228 ~~~~~a~vVvl~~~~~~~~~ll~~a~~~g~~---~~wi 262 (458)
T cd06375 228 LQKPNARVVVLFTRSEDARELLAAAKRLNAS---FTWV 262 (458)
T ss_pred hccCCCEEEEEecChHHHHHHHHHHHHcCCc---EEEE
Confidence 53 3333347778888999999999887764 5565
No 90
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=56.60 E-value=4.8 Score=34.89 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=18.6
Q ss_pred hHHHHHHHhchhcCCCCCCHH
Q psy12232 2 SSYELMRDCWSYVASERPEFI 22 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~ 22 (202)
++.+++.+||+.+|.+||+..
T Consensus 222 ~~~~li~~~l~~dP~~R~~~~ 242 (316)
T cd05620 222 ESKDILEKLFERDPTRRLGVV 242 (316)
T ss_pred HHHHHHHHHccCCHHHcCCCh
Confidence 467899999999999999974
No 91
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=56.24 E-value=6.2 Score=34.19 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=18.6
Q ss_pred hHHHHHHHhchhcCCCCCCHH
Q psy12232 2 SSYELMRDCWSYVASERPEFI 22 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~ 22 (202)
++.+++.+||..+|.+||+..
T Consensus 222 ~~~~ll~~~l~~~P~~R~~~~ 242 (316)
T cd05592 222 EAKDCLSKLFERDPTKRLGVD 242 (316)
T ss_pred HHHHHHHHHccCCHHHcCCCh
Confidence 367899999999999999875
No 92
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=55.94 E-value=7 Score=32.95 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.3
Q ss_pred hHHHHHHHhchhcCCCCCCH
Q psy12232 2 SSYELMRDCWSYVASERPEF 21 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF 21 (202)
.+.+++.+||..+|.+||+.
T Consensus 224 ~l~~li~~~l~~~p~~R~~~ 243 (290)
T cd05580 224 DAKDLIRNLLQVDLTKRLGN 243 (290)
T ss_pred HHHHHHHHHccCCHHHccCc
Confidence 46789999999999999943
No 93
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=55.20 E-value=7 Score=33.82 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.1
Q ss_pred hHHHHHHHhchhcCCCCCC-HHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERPE-FIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPt-F~eLv~~ 27 (202)
.+.+++.+|+. +|.+||+ +.+++.+
T Consensus 260 ~~~~li~~ll~-dp~~R~~s~~~ll~h 285 (350)
T cd05573 260 EAIDLICRLLC-DPEDRLGSFEEIKSH 285 (350)
T ss_pred HHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence 35689999997 9999999 9888753
No 94
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=55.02 E-value=6.9 Score=33.95 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=16.5
Q ss_pred hHHHHHHHhchhcCCCCC
Q psy12232 2 SSYELMRDCWSYVASERP 19 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RP 19 (202)
.+.+++.+||..+|.+||
T Consensus 226 ~~~~li~~~l~~~p~~R~ 243 (323)
T cd05584 226 EARDLLKKLLKRNPSSRL 243 (323)
T ss_pred HHHHHHHHHcccCHhHcC
Confidence 367999999999999999
No 95
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=54.02 E-value=5.9 Score=34.42 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=18.7
Q ss_pred hHHHHHHHhchhcCCCCCCHH
Q psy12232 2 SSYELMRDCWSYVASERPEFI 22 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~ 22 (202)
++.+++.+||+.+|.+||+..
T Consensus 222 ~~~~li~~~l~~~P~~R~~~~ 242 (316)
T cd05619 222 EAKDILVKLFVREPERRLGVK 242 (316)
T ss_pred HHHHHHHHHhccCHhhcCCCh
Confidence 356899999999999999986
No 96
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=53.76 E-value=6.6 Score=34.24 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=17.6
Q ss_pred hHHHHHHHhchhcCCCCCCH
Q psy12232 2 SSYELMRDCWSYVASERPEF 21 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF 21 (202)
.+.+++.+|+..+|.+||+.
T Consensus 231 ~~~~li~~~L~~dP~~R~~~ 250 (329)
T cd05588 231 KASSVLKGFLNKDPKERLGC 250 (329)
T ss_pred HHHHHHHHHhccCHHHcCCC
Confidence 35789999999999999984
No 97
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=53.61 E-value=7.9 Score=38.14 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=22.4
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
+.+++..||..+|.+||++.+++.+
T Consensus 610 ~~~~l~~lL~~dP~~R~ta~e~l~h 634 (669)
T cd05610 610 AQNAIEILLTMDPTKRAGLKELKQH 634 (669)
T ss_pred HHHHHHHHcccChhHCcCHHHHHhC
Confidence 5678999999999999999999764
No 98
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=53.19 E-value=6.8 Score=33.29 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=16.4
Q ss_pred HHHHHHHhchhcCCCCCC
Q psy12232 3 SYELMRDCWSYVASERPE 20 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPt 20 (202)
+-+++.+||..+|.+||+
T Consensus 225 ~~~li~~~l~~dp~~R~~ 242 (291)
T cd05612 225 AKDLIKKLLVVDRTRRLG 242 (291)
T ss_pred HHHHHHHHcCCCHHHccC
Confidence 568999999999999996
No 99
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=53.18 E-value=6.6 Score=34.03 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=21.5
Q ss_pred hHHHHHHHhchhcCCCCC-----CHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERP-----EFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RP-----tF~eLv~~ 27 (202)
++.+++.+||..+|.+|| +..+++++
T Consensus 222 ~~~~li~~~L~~dP~~R~~~~~~~~~~il~h 252 (325)
T cd05594 222 EAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH 252 (325)
T ss_pred HHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence 467899999999999996 78777643
No 100
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=52.35 E-value=1.1e+02 Score=23.91 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=63.8
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeeccccccc----chhhhhhhcc--CCccccccCCCc-chhHHHHHhhcc
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDSFIF----DHKYKSLLQN--IPTRHIIAPVED-SRSVKRQLFRFK 160 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~f~~----~~ky~~ll~~--~p~rh~~~~~~~-~~~~~~~~~~~~ 160 (202)
.++..+.+.....-+.+...+.+++.+..++++.+.... ..-|+..++. ++.......-.+ .+..+.-...++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (269)
T cd01391 99 PYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLK 178 (269)
T ss_pred ceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHh
Confidence 466666666665666667777777888878887766321 2334444442 222222111111 134444445555
Q ss_pred cC-ceeeeeeecchhhHHHHHhhhhhhhcccccceeEEee
Q psy12232 161 DL-DIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHAIT 199 (202)
Q Consensus 161 ~~-d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (202)
.- ++.-+|+.++ .....++.++...+.-++++.|....
T Consensus 179 ~~~~~~~i~~~~~-~~a~~~~~~~~~~g~~~~~~~ii~~~ 217 (269)
T cd01391 179 AAPKPDAIFACND-EMAAGALKAAREAGLTPGDISIIGFD 217 (269)
T ss_pred cCCCCCEEEEcCc-hHHHHHHHHHHHcCCCCCCCEEEecc
Confidence 44 4545555555 88889999988876666778877653
No 101
>KOG0198|consensus
Probab=49.88 E-value=10 Score=34.58 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=21.6
Q ss_pred HHHHHHhchhcCCCCCCHHHHHHHH
Q psy12232 4 YELMRDCWSYVASERPEFIQLVSKL 28 (202)
Q Consensus 4 Y~LM~~CW~~dP~~RPtF~eLv~~L 28 (202)
-+.+..|...+|.+|||+.+|+.+-
T Consensus 253 ~~Fl~~C~~~~p~~Rpta~eLL~hp 277 (313)
T KOG0198|consen 253 KDFLRKCFKRDPEKRPTAEELLEHP 277 (313)
T ss_pred HHHHHHHhhcCcccCcCHHHHhhCh
Confidence 4678899999999999999887654
No 102
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=49.52 E-value=8.3 Score=33.65 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=21.3
Q ss_pred hHHHHHHHhchhcCCCCC-----CHHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERP-----EFIQLVSK 27 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RP-----tF~eLv~~ 27 (202)
++.+++.+||..+|.+|| +..+|..+
T Consensus 221 ~~~~li~~~L~~dP~~R~~~~~~~~~~il~h 251 (328)
T cd05593 221 DAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH 251 (328)
T ss_pred HHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence 467899999999999997 77777643
No 103
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=49.04 E-value=7 Score=33.98 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=19.9
Q ss_pred hHHHHHHHhchhcCCCCC-----CHHHHHH
Q psy12232 2 SSYELMRDCWSYVASERP-----EFIQLVS 26 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RP-----tF~eLv~ 26 (202)
.+.+++.+||..+|.+|| +..++++
T Consensus 221 ~~~~li~~~L~~dP~~R~~~~~~~~~~~l~ 250 (323)
T cd05595 221 EAKSLLAGLLKKDPKQRLGGGPSDAKEVME 250 (323)
T ss_pred HHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence 357899999999999998 5555543
No 104
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=48.08 E-value=67 Score=29.93 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=65.8
Q ss_pred ccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccc-cc---cchhhhhhhc--cCCcccc--ccCCCcchhHHHHHhh
Q psy12232 87 MKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDS-FI---FDHKYKSLLQ--NIPTRHI--IAPVEDSRSVKRQLFR 158 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~-f~---~~~ky~~ll~--~~p~rh~--~~~~~~~~~~~~~~~~ 158 (202)
-+|.+...|+......++..+++..+-+..++++++. |. ++. .+..++ ++-..+. +..-....++..++.+
T Consensus 160 ~p~~fRt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~~yg~~~~~~-~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~ 238 (472)
T cd06374 160 FKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMEA-FKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRK 238 (472)
T ss_pred CCceEEcCCChHHHHHHHHHHHHHCCCcEEEEEEecchHHHHHHHH-HHHHHHHCCeeEEEEEEecCCCchHHHHHHHHH
Confidence 3567887777776777777788888888888888753 33 111 122222 2222211 1111134688899999
Q ss_pred cccC--ceeeeeeecchhhHHHHHhhhhhhhcccccceeEE
Q psy12232 159 FKDL--DIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHA 197 (202)
Q Consensus 159 ~~~~--d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (202)
+++. |..=..+.+....+..++.+|....+.+ +|-|..
T Consensus 239 lk~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~~-~~~wi~ 278 (472)
T cd06374 239 LRSRLPKARVVVCFCEGMTVRGLLMAMRRLGVGG-EFQLIG 278 (472)
T ss_pred HHhcCCCcEEEEEEechHHHHHHHHHHHHhcCCC-ceEEEE
Confidence 9964 4221223366677889999999888764 455643
No 105
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=47.96 E-value=58 Score=29.51 Aligned_cols=109 Identities=13% Similarity=0.177 Sum_probs=63.4
Q ss_pred ceEeeCCCCCChHHHHHHHHHHhcCCcceeecccc-cc--cchhhhhhhc--cCCc--cccccCCC-----cchhHHHHH
Q psy12232 89 YLIQVNPPGDILPEVIRAIILMQNITDAGILFDDS-FI--FDHKYKSLLQ--NIPT--RHIIAPVE-----DSRSVKRQL 156 (202)
Q Consensus 89 YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~-f~--~~~ky~~ll~--~~p~--rh~~~~~~-----~~~~~~~~~ 156 (202)
|.+...|+....-.++..++...+.+..+++++++ |. +-...+..++ ++.. ...+..-. ...++.++|
T Consensus 112 ~f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~iv~~~~~~~~~~~~~~~~~~~~~~l 191 (404)
T cd06370 112 TFARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDSKYSSVFETLKEEAELRNITISHVEYYADFYPPDPIMDNPFEDII 191 (404)
T ss_pred CeEEcCCCHHHHHHHHHHHHHHCCCcEEEEEEecCcccHHHHHHHHHHHHHcCCEEEEEEEECCCCCchhhhHHHHHHHH
Confidence 34455665444444555677888888888888744 32 1111122222 1111 11111110 136788889
Q ss_pred hhcccCceeeeeeecchhhHHHHHhhhhhhhcc-cccceeEEe
Q psy12232 157 FRFKDLDIVNYFILGRLQTIKMILDSANVNKFF-GRKFAWHAI 198 (202)
Q Consensus 157 ~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 198 (202)
++++....+ +.++|.......++..|...++. +..|.|...
T Consensus 192 ~~~~~~~~~-~v~~~~~~~~~~~l~qa~~~g~~~~~~y~~i~~ 233 (404)
T cd06370 192 QRTKETTRI-YVFIGEANELRQFLMSMLDEGLLESGDYMVLGV 233 (404)
T ss_pred HhccCCCEE-EEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 888875433 33456667788899999998998 677877754
No 106
>KOG0661|consensus
Probab=47.77 E-value=11 Score=37.07 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.6
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
.-+||.+|..|||.+|||-.+.++.
T Consensus 267 ~~~li~~ll~WDP~kRpTA~~al~~ 291 (538)
T KOG0661|consen 267 AASLIERLLAWDPDKRPTASQALQH 291 (538)
T ss_pred HHHHHHHHhcCCCccCccHHHHhcC
Confidence 4579999999999999999987754
No 107
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=47.04 E-value=10 Score=32.78 Aligned_cols=20 Identities=5% Similarity=-0.008 Sum_probs=17.2
Q ss_pred HHHHHHHhchhcCCCCCCHH
Q psy12232 3 SYELMRDCWSYVASERPEFI 22 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~ 22 (202)
+.+++.+||..+|.+||+..
T Consensus 225 ~~~li~~~L~~~P~~R~~~~ 244 (330)
T cd05586 225 GRQFVKGLLNRNPQHRLGAH 244 (330)
T ss_pred HHHHHHHHcCCCHHHCCCCC
Confidence 56899999999999999643
No 108
>KOG0593|consensus
Probab=45.66 E-value=16 Score=34.44 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.2
Q ss_pred HHHHHHHhchhcCCCCCCHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLV 25 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv 25 (202)
+-++|..|.+.+|.+|++..++.
T Consensus 260 ~ld~~k~cL~~dP~~R~sc~qll 282 (396)
T KOG0593|consen 260 LLDLLKKCLKMDPDDRLSCEQLL 282 (396)
T ss_pred HHHHHHHHhcCCccccccHHHHh
Confidence 45899999999999999999987
No 109
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=45.62 E-value=11 Score=32.57 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=22.4
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhh
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTV 34 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~ 34 (202)
++.+++.+|+..+|.+||++.......+.++..
T Consensus 222 ~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h 254 (321)
T cd05591 222 EAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH 254 (321)
T ss_pred HHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence 467899999999999999654433233333333
No 110
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=43.38 E-value=86 Score=29.38 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=66.4
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceee-cccccc---cchhhhhhhc-cCC--ccccccCCC-c-chhHHHHHhh
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGIL-FDDSFI---FDHKYKSLLQ-NIP--TRHIIAPVE-D-SRSVKRQLFR 158 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~-~d~~f~---~~~ky~~ll~-~~p--~rh~~~~~~-~-~~~~~~~~~~ 158 (202)
+|.+...|+......++..++...|-+..+++ .|+.|. ++.-.+.+-+ ++- +...+..-. + ..++..++++
T Consensus 147 p~ffRt~psd~~q~~ai~~li~~f~W~~Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~~l~~ 226 (469)
T cd06365 147 PSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVISDDDRGEQFLSDLREEMQRNGICLAFVEKIPVNMQLYLTRAEKYYNQ 226 (469)
T ss_pred CcceEecCCchhHHHHHHHHHHhcCCeEEEEEEecChhHHHHHHHHHHHHHHCCeEEEEEEEecCCchhhHHHHHHHHHH
Confidence 67788888877777888888888899988865 455453 2222222222 111 111121111 1 2477889999
Q ss_pred cccCceeeeeeecchhhHHHHHhhhhhhhcccccceeE
Q psy12232 159 FKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWH 196 (202)
Q Consensus 159 ~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (202)
+++....-+++.|+...+..++..|.....+| +-|.
T Consensus 227 i~~~~arvIvl~~~~~~~~~l~~~~~~~~~~~--~~wi 262 (469)
T cd06365 227 IMTSSAKVIIIYGDTDSLLEVSFRLWQYLLIG--KVWI 262 (469)
T ss_pred hhcCCCeEEEEEcCcHHHHHHHHHHHHhccCc--eEEE
Confidence 98888888899999877766655555445444 5554
No 111
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=43.17 E-value=10 Score=32.83 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=19.1
Q ss_pred hHHHHHHHhchhcCCCCCCHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQ 23 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~e 23 (202)
.+.+++.+|++.+|.+||+..+
T Consensus 222 ~~~~li~~~L~~dP~~R~~~~~ 243 (320)
T cd05590 222 DAVDILKAFMTKNPTMRLGSLT 243 (320)
T ss_pred HHHHHHHHHcccCHHHCCCCCC
Confidence 3568999999999999999854
No 112
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=42.92 E-value=12 Score=32.57 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=17.2
Q ss_pred HHHHHHHhchhcCCCCCCH
Q psy12232 3 SYELMRDCWSYVASERPEF 21 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF 21 (202)
+.+++.+|+..+|.+||+.
T Consensus 230 ~~~li~~~L~~dP~~R~~~ 248 (327)
T cd05617 230 ASHVLKGFLNKDPKERLGC 248 (327)
T ss_pred HHHHHHHHhccCHHHcCCC
Confidence 5689999999999999984
No 113
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=40.22 E-value=12 Score=32.41 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=17.7
Q ss_pred HHHHHHHhchhcCCCCCCHH
Q psy12232 3 SYELMRDCWSYVASERPEFI 22 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~ 22 (202)
+.+++.+||..+|.+||+..
T Consensus 228 ~~~li~~~l~~~P~~R~~~~ 247 (324)
T cd05587 228 AVSICKGLLTKHPAKRLGCG 247 (324)
T ss_pred HHHHHHHHhhcCHHHcCCCC
Confidence 56899999999999999873
No 114
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=40.03 E-value=18 Score=35.25 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
.++|+.+|-..+|.+|||..++++
T Consensus 426 ~~dLi~~mL~~dP~kR~ta~e~L~ 449 (566)
T PLN03225 426 GWELLKSMMRFKGRQRISAKAALA 449 (566)
T ss_pred HHHHHHHHccCCcccCCCHHHHhC
Confidence 357999999999999999887764
No 115
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=39.52 E-value=25 Score=36.83 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHHHHHhchhcCCCCC-CHHHHHHHHHHHhhhh
Q psy12232 3 SYELMRDCWSYVASERP-EFIQLVSKLDRILTVT 35 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RP-tF~eLv~~Le~ll~~~ 35 (202)
+.+++.+||..+|.+|| ++.++...|+..++..
T Consensus 261 L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~~ 294 (932)
T PRK13184 261 LSQIAMKALAVDPAERYSSVQELKQDLEPHLQGS 294 (932)
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcC
Confidence 67899999999999995 5677888888887653
No 116
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=39.22 E-value=52 Score=30.23 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCcceeecccccccchhhhhhhccCCccccccCCCcchhHHHHHhhcccCceeeeeeecchhhHHHHH
Q psy12232 101 PEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQNIPTRHIIAPVEDSRSVKRQLFRFKDLDIVNYFILGRLQTIKMIL 180 (202)
Q Consensus 101 pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~~~p~rh~~~~~~~~~~~~~~~~~~~~~d~~n~f~~g~~~~~~~~l 180 (202)
|=.+...+...+..+.|+.+|-||..-=--+.+|+..|--++++-=.|.+.++.--++|..-+=.=.|+-|+++.+..+|
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHH
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHH
Confidence 33466666777788889999999998888899999988888888777877887777777766444457889999999999
Q ss_pred hhh
Q psy12232 181 DSA 183 (202)
Q Consensus 181 ~~~ 183 (202)
...
T Consensus 86 ~~~ 88 (310)
T PF01795_consen 86 KEL 88 (310)
T ss_dssp HHT
T ss_pred HHc
Confidence 887
No 117
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=38.97 E-value=80 Score=28.85 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHhcCCcceeecccccccchhhhhhhccCCccccccCCCcchhHHHHHhhcccCceeeeeeecchhhHHHH
Q psy12232 100 LPEVIRAIILMQNITDAGILFDDSFIFDHKYKSLLQNIPTRHIIAPVEDSRSVKRQLFRFKDLDIVNYFILGRLQTIKMI 179 (202)
Q Consensus 100 ~pe~vr~~~~~~nit~Agi~~d~~f~~~~ky~~ll~~~p~rh~~~~~~~~~~~~~~~~~~~~~d~~n~f~~g~~~~~~~~ 179 (202)
+|=...+.+...++.+.|+.+|-||..-.--..+|+..|-.++++-=.|...++.--++|.+..=-=-|+.|+...+..+
T Consensus 5 ~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 5 QSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEH 84 (305)
T ss_pred cchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHH
Confidence 34445666666777777999999999999999999987656666544454444333333443210114789999999999
Q ss_pred Hhhhh
Q psy12232 180 LDSAN 184 (202)
Q Consensus 180 l~~~~ 184 (202)
|....
T Consensus 85 l~~~~ 89 (305)
T TIGR00006 85 LDELL 89 (305)
T ss_pred HHhcC
Confidence 97654
No 118
>KOG1989|consensus
Probab=38.66 E-value=33 Score=35.13 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=30.4
Q ss_pred hHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhh
Q psy12232 2 SSYELMRDCWSYVASERPEFIQLVSKLDRILTVT 35 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~eLv~~Le~ll~~~ 35 (202)
.|.+|++.|.+.+|.+||+-.|+...+-++...+
T Consensus 282 ~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~ 315 (738)
T KOG1989|consen 282 RLKDLIRTMLQPNPDERPNIYQVLEEIFELANKP 315 (738)
T ss_pred HHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCC
Confidence 4779999999999999999999999998887644
No 119
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.56 E-value=82 Score=27.33 Aligned_cols=107 Identities=11% Similarity=0.157 Sum_probs=63.7
Q ss_pred ccceEeeCCCC-CChHHHHHHHHHHh-cCCcceeeccc--ccc--cchhhhhhhccCCccccc-cCCC-cchhHHHHHhh
Q psy12232 87 MKYLIQVNPPG-DILPEVIRAIILMQ-NITDAGILFDD--SFI--FDHKYKSLLQNIPTRHII-APVE-DSRSVKRQLFR 158 (202)
Q Consensus 87 ~~YLlqv~pp~-~~~pe~vr~~~~~~-nit~Agi~~d~--~f~--~~~ky~~ll~~~p~rh~~-~~~~-~~~~~~~~~~~ 158 (202)
..|.+.+.++. ...+..+..++... +....++++.. .|. .-.-++..++..-..-+. .... +..++..++.+
T Consensus 108 ~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~ 187 (344)
T cd06348 108 GPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITA 187 (344)
T ss_pred CCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHH
Confidence 34666554443 33566666777666 77787888743 243 112233333311111110 0111 35688899999
Q ss_pred cccCceeeeeeecchhhHHHHHhhhhhhhcccccc
Q psy12232 159 FKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKF 193 (202)
Q Consensus 159 ~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~ 193 (202)
++.....=.|+.|.......++.+|....+.++-+
T Consensus 188 i~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~ 222 (344)
T cd06348 188 VLNSKPDLIVISALAADGGNLVRQLRELGYNGLIV 222 (344)
T ss_pred HHhcCCCEEEECCcchhHHHHHHHHHHcCCCCcee
Confidence 98877766778888878888999888877765433
No 120
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=37.01 E-value=1.2e+02 Score=26.15 Aligned_cols=107 Identities=9% Similarity=0.188 Sum_probs=62.9
Q ss_pred ccceEeeCCCCCChHHHHHHHHHHhc--CCcceeecccc-cc--cchhhhhhhccCCccccc-cCCC-cchhHHHHHhhc
Q psy12232 87 MKYLIQVNPPGDILPEVIRAIILMQN--ITDAGILFDDS-FI--FDHKYKSLLQNIPTRHII-APVE-DSRSVKRQLFRF 159 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~~~~~n--it~Agi~~d~~-f~--~~~ky~~ll~~~p~rh~~-~~~~-~~~~~~~~~~~~ 159 (202)
.+|.+.+.|+.......+...+...+ ....++++.+. |. +-...+..++.....-+. .... +..++..++.++
T Consensus 113 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l 192 (345)
T cd06338 113 FKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKA 192 (345)
T ss_pred CceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHH
Confidence 35666666665554444555555555 66667777654 32 111223333322111111 0111 346888899999
Q ss_pred ccCceeeeeeecchhhHHHHHhhhhhhhcccccc
Q psy12232 160 KDLDIVNYFILGRLQTIKMILDSANVNKFFGRKF 193 (202)
Q Consensus 160 ~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~ 193 (202)
++.+.--.++.+....+..++.++....+-.+-+
T Consensus 193 ~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (345)
T cd06338 193 KAAGPDAVVVAGHFPDAVLLVRQMKELGYNPKAL 226 (345)
T ss_pred HhcCCCEEEECCcchhHHHHHHHHHHcCCCCCEE
Confidence 8887777788888888888998888877755444
No 121
>KOG0201|consensus
Probab=36.83 E-value=29 Score=33.66 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVSK 27 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~~ 27 (202)
+-+.|..|...+|..||+-.+|+++
T Consensus 239 ~kEFV~~CL~k~P~~RpsA~~LLKh 263 (467)
T KOG0201|consen 239 FKEFVEACLDKNPEFRPSAKELLKH 263 (467)
T ss_pred HHHHHHHHhhcCcccCcCHHHHhhh
Confidence 5678999999999999999998753
No 122
>PHA03210 serine/threonine kinase US3; Provisional
Probab=35.86 E-value=25 Score=33.17 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=20.7
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+.+++.+|-..+|.+|||..|++.
T Consensus 430 ~~~li~kmL~~DP~~Rpsa~elL~ 453 (501)
T PHA03210 430 FEYPLVKMLTFDWHLRPGAAELLA 453 (501)
T ss_pred HHHHHHHHhccCcccCcCHHHHhh
Confidence 456788999999999999999874
No 123
>KOG0582|consensus
Probab=35.67 E-value=26 Score=34.23 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.1
Q ss_pred HHHHHHHhchhcCCCCCCHHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv~ 26 (202)
+.++...|...+|.+|||-++|++
T Consensus 269 f~e~i~~CL~kDP~kRptAskLlk 292 (516)
T KOG0582|consen 269 FREMIALCLVKDPSKRPTASKLLK 292 (516)
T ss_pred HHHHHHHHhhcCcccCCCHHHHhc
Confidence 457889999999999999998864
No 124
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.08 E-value=1.6e+02 Score=25.82 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=64.0
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhcCCcceeeccc-ccc--cchhhhhhhccCCcccc-ccCCC-cchhHHHHHhhcc
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDD-SFI--FDHKYKSLLQNIPTRHI-IAPVE-DSRSVKRQLFRFK 160 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~-~f~--~~~ky~~ll~~~p~rh~-~~~~~-~~~~~~~~~~~~~ 160 (202)
..+|.+...|+...........+.+.+.+..++++.+ .|. +-.-+++.|+..-..=+ ...++ +..++..|+.+++
T Consensus 111 ~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~ 190 (347)
T cd06336 111 GNPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLL 190 (347)
T ss_pred CCceEEEecCCchhHHHHHHHHHhhcCCceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHH
Confidence 3456666666555444444455555677776666644 332 11223444441111110 11112 3578999999998
Q ss_pred cCceeeeeeecchh-hHHHHHhhhhhhhcccccce
Q psy12232 161 DLDIVNYFILGRLQ-TIKMILDSANVNKFFGRKFA 194 (202)
Q Consensus 161 ~~d~~n~f~~g~~~-~~~~~l~~~~~~~~~~~~~~ 194 (202)
+-+.--.|+.|... ....++..++...+-+..++
T Consensus 191 ~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 225 (347)
T cd06336 191 AEKPDVIFLGGPSPAPAALVIKQARELGFKGGFLS 225 (347)
T ss_pred hcCCCEEEEcCCCchHHHHHHHHHHHcCCCccEEe
Confidence 77766668888888 88888888888777665543
No 125
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=33.00 E-value=18 Score=31.29 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=18.4
Q ss_pred hHHHHHHHhchhcCCCCCCHH
Q psy12232 2 SSYELMRDCWSYVASERPEFI 22 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~ 22 (202)
.+.+++.+|++.+|.+||+..
T Consensus 222 ~~~~li~~~l~~~p~~R~~~~ 242 (323)
T cd05575 222 SARHLLEGLLQKDRTKRLGAK 242 (323)
T ss_pred HHHHHHHHHhhcCHHhCCCCC
Confidence 467899999999999999865
No 126
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=30.48 E-value=1.7e+02 Score=26.88 Aligned_cols=107 Identities=11% Similarity=0.180 Sum_probs=65.3
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeeccc-ccccc--hhhhhhhc--cCCccc--cccCCC-cc----hhHHHH
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFDD-SFIFD--HKYKSLLQ--NIPTRH--IIAPVE-DS----RSVKRQ 155 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~-~f~~~--~ky~~ll~--~~p~rh--~~~~~~-~~----~~~~~~ 155 (202)
+|.+...|+...-..++..++...+.+..++++.+ .|.-. -..+..++ ++-... .+..-. +. .....+
T Consensus 147 ~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~ 226 (403)
T cd06361 147 PSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTT 226 (403)
T ss_pred CCeeECCCchHhHHHHHHHHHHHcCCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHH
Confidence 56788777777677778888888898888888753 45411 11122232 222211 111111 11 344455
Q ss_pred HhhcccCceeeeeeecchhhHHHHHhhhhhhhcccccceeEE
Q psy12232 156 LFRFKDLDIVNYFILGRLQTIKMILDSANVNKFFGRKFAWHA 197 (202)
Q Consensus 156 ~~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (202)
+++++....-=.++.|.......++..|...++ ++.|.+
T Consensus 227 ~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~---~~~wig 265 (403)
T cd06361 227 EKIIEENKVNVIVVFARQFHVFLLFNKAIERNI---NKVWIA 265 (403)
T ss_pred HHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCC---CeEEEE
Confidence 555666555555788899999999999998887 577764
No 127
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=29.91 E-value=21 Score=30.86 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=18.7
Q ss_pred hHHHHHHHhchhcCCCCCCHHH
Q psy12232 2 SSYELMRDCWSYVASERPEFIQ 23 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~e 23 (202)
.+++++.+|+..+|.+||+..+
T Consensus 222 ~~~~ll~~ll~~~p~~R~~~~~ 243 (325)
T cd05604 222 TAWSILEELLEKDRQRRLGAKE 243 (325)
T ss_pred HHHHHHHHHhccCHHhcCCCCC
Confidence 3678999999999999998754
No 128
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=29.88 E-value=28 Score=30.77 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=19.4
Q ss_pred HHHHHHHhchhcCCCCC-----CHHHHHH
Q psy12232 3 SYELMRDCWSYVASERP-----EFIQLVS 26 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RP-----tF~eLv~ 26 (202)
+.+++.+|+..+|.+|+ +..++.+
T Consensus 255 ~~~li~~~l~~dp~~R~~~~~~~~~~~~~ 283 (340)
T PTZ00426 255 CKHLMKKLLSHDLTKRYGNLKKGAQNVKE 283 (340)
T ss_pred HHHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence 56899999999999996 6666553
No 129
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=26.88 E-value=25 Score=30.37 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=19.0
Q ss_pred HHHHHHHhchhcCCCCCCHHHHH
Q psy12232 3 SYELMRDCWSYVASERPEFIQLV 25 (202)
Q Consensus 3 LY~LM~~CW~~dP~~RPtF~eLv 25 (202)
+.+++.+|++.+|.+||+..+..
T Consensus 223 ~~~li~~~l~~~p~~R~~~~~~~ 245 (325)
T cd05602 223 ARHLLEGLLQKDRTKRLGAKDDF 245 (325)
T ss_pred HHHHHHHHcccCHHHCCCCCCCH
Confidence 56889999999999999876543
No 130
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.46 E-value=2.9e+02 Score=23.90 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=59.2
Q ss_pred cccceEeeCCCCCChHHHHHHHHHHhc-CCcceeeccc-c-cccc--hhhhhhhcc---CCccccccCCC-cchhHHHHH
Q psy12232 86 QMKYLIQVNPPGDILPEVIRAIILMQN-ITDAGILFDD-S-FIFD--HKYKSLLQN---IPTRHIIAPVE-DSRSVKRQL 156 (202)
Q Consensus 86 ~~~YLlqv~pp~~~~pe~vr~~~~~~n-it~Agi~~d~-~-f~~~--~ky~~ll~~---~p~rh~~~~~~-~~~~~~~~~ 156 (202)
..+|.+.+.|........+...+...+ .+..++++++ . |.-+ .-++..++. ++.-.-. .+. ...+...++
T Consensus 106 ~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~v 184 (332)
T cd06344 106 PGPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGGGIVVTPC-DLSSPDFNANTAV 184 (332)
T ss_pred CCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHHHHHhcCCeeeeec-cCCCCCCCHHHHH
Confidence 456777777665555555555566555 7787888765 3 5533 334445442 1111100 111 133566788
Q ss_pred hhcccCceeeeeeecchhhHHHHHhhhhhhhc
Q psy12232 157 FRFKDLDIVNYFILGRLQTIKMILDSANVNKF 188 (202)
Q Consensus 157 ~~~~~~d~~n~f~~g~~~~~~~~l~~~~~~~~ 188 (202)
.++++.+..-.|+.+....+..+++.+..+.+
T Consensus 185 ~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~~ 216 (332)
T cd06344 185 SQAINNGATVLVLFPDTDTLDKALEVAKANKG 216 (332)
T ss_pred HHHHhcCCCEEEEeCChhHHHHHHHHHHhcCC
Confidence 88887765555676677788888888776543
No 131
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=24.63 E-value=3.4e+02 Score=23.07 Aligned_cols=100 Identities=10% Similarity=0.059 Sum_probs=54.5
Q ss_pred cceEeeCCCCCChHHHHHHH-HHHhcCCcceeecccccccchhhh----hhhc--cCCccccccCCCcchhHHHHHhhcc
Q psy12232 88 KYLIQVNPPGDILPEVIRAI-ILMQNITDAGILFDDSFIFDHKYK----SLLQ--NIPTRHIIAPVEDSRSVKRQLFRFK 160 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~-~~~~nit~Agi~~d~~f~~~~ky~----~ll~--~~p~rh~~~~~~~~~~~~~~~~~~~ 160 (202)
+|.+.+.|+....-..+... ....+....++++.+. ...+.+. +.++ .+.......--.+..++..++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~ 187 (334)
T cd06342 109 KNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKT-AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIK 187 (334)
T ss_pred ceEEeccCCcHHHHHHHHHHHHHhcCCCEEEEEeCCc-chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHH
Confidence 45666555433222233333 3344566667776654 4344443 3333 2222211111113467888888888
Q ss_pred cCceeeeeeecchhhHHHHHhhhhhhhc
Q psy12232 161 DLDIVNYFILGRLQTIKMILDSANVNKF 188 (202)
Q Consensus 161 ~~d~~n~f~~g~~~~~~~~l~~~~~~~~ 188 (202)
+...--.++.|.......++..++..++
T Consensus 188 ~~~~~~vi~~~~~~~~~~~~~~~~~~g~ 215 (334)
T cd06342 188 AANPDAVFFGGYYPEAGPLVRQMRQLGL 215 (334)
T ss_pred hcCCCEEEEcCcchhHHHHHHHHHHcCC
Confidence 8766556777777777778888877655
No 132
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.61 E-value=3.1e+02 Score=23.53 Aligned_cols=102 Identities=9% Similarity=0.081 Sum_probs=60.7
Q ss_pred ccceEeeCCCCCChHHHHHHHHHHhcCCcceeeccc-ccccc--hhhhhhhccCCccccc-cCCC-cchhHHHHHhhccc
Q psy12232 87 MKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDD-SFIFD--HKYKSLLQNIPTRHII-APVE-DSRSVKRQLFRFKD 161 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~-~f~~~--~ky~~ll~~~p~rh~~-~~~~-~~~~~~~~~~~~~~ 161 (202)
.+|.+...|+.......+...+...+.+..++++.+ .|..+ -.++..++..-.+=+- .... ...++..++.++++
T Consensus 111 ~~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~ 190 (312)
T cd06346 111 NGLFFRTAPSDALQGQALAQLAAERGYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA 190 (312)
T ss_pred CceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh
Confidence 457777777655554555566777788887777643 33322 1234444422111110 0111 35788889999988
Q ss_pred CceeeeeeecchhhHHHHHhhhhhhhc
Q psy12232 162 LDIVNYFILGRLQTIKMILDSANVNKF 188 (202)
Q Consensus 162 ~d~~n~f~~g~~~~~~~~l~~~~~~~~ 188 (202)
.+.-=.|+.+.....-.++..+....+
T Consensus 191 ~~pd~v~~~~~~~~~~~~~~~~~~~G~ 217 (312)
T cd06346 191 GGPDALVVIGYPETGSGILRSAYEQGL 217 (312)
T ss_pred cCCCEEEEecccchHHHHHHHHHHcCC
Confidence 776666777777777777777776655
No 133
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=23.99 E-value=2.4e+02 Score=23.85 Aligned_cols=102 Identities=9% Similarity=0.040 Sum_probs=56.3
Q ss_pred ccceEeeCCCCCChHHHHHHHHHHhcCCcceeecccc-cccc--hhhhhhhccCCccccccCCCcchhHHHHHhhcccCc
Q psy12232 87 MKYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDS-FIFD--HKYKSLLQNIPTRHIIAPVEDSRSVKRQLFRFKDLD 163 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~-f~~~--~ky~~ll~~~p~rh~~~~~~~~~~~~~~~~~~~~~d 163 (202)
.+|...+.|........+...+...+....++++.++ |..+ -.++..++.....+..-.. ...++..++.++++.+
T Consensus 108 ~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~i~~l~~~~ 186 (333)
T cd06332 108 SPNFFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPDYAAGKDAVAGFKRTFKGEVVEEVYTPL-GQLDFSAELAQIRAAK 186 (333)
T ss_pred CCcEEEeeCChHHhHHHHHHHHHHhCCceEEEEecCcchhHHHHHHHHHhhcEEEeeEEecCC-CCcchHHHHHHHHhcC
Confidence 4677777766555555566667777877778777543 2211 1223333300001111111 2456778888888776
Q ss_pred eeeeeeecchhhHHHHHhhhhhhhcc
Q psy12232 164 IVNYFILGRLQTIKMILDSANVNKFF 189 (202)
Q Consensus 164 ~~n~f~~g~~~~~~~~l~~~~~~~~~ 189 (202)
.-=.|+.+.....-.++..+....+-
T Consensus 187 ~d~i~~~~~~~~~~~~~~~~~~~g~~ 212 (333)
T cd06332 187 PDAVFVFLPGGMAVNFVKQYDQAGLK 212 (333)
T ss_pred CCEEEEecccchHHHHHHHHHHcCcc
Confidence 55456655545555677777765553
No 134
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=21.83 E-value=48 Score=28.47 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=18.0
Q ss_pred hHHHHHHHhchhcCCCCCCHH
Q psy12232 2 SSYELMRDCWSYVASERPEFI 22 (202)
Q Consensus 2 ~LY~LM~~CW~~dP~~RPtF~ 22 (202)
.+.+++.+|++.+|.+||+..
T Consensus 222 ~~~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 222 AACDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred HHHHHHHHHccCCHhhcCCCC
Confidence 367899999999999999753
No 135
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=20.88 E-value=2.6e+02 Score=23.85 Aligned_cols=102 Identities=7% Similarity=-0.054 Sum_probs=57.9
Q ss_pred cceEeeCCCCCChHHHHHHHHHHhcCCcceeecccc-ccc--chhhhhhhc--cCCccccccCCC-cchhHHHHHhhccc
Q psy12232 88 KYLIQVNPPGDILPEVIRAIILMQNITDAGILFDDS-FIF--DHKYKSLLQ--NIPTRHIIAPVE-DSRSVKRQLFRFKD 161 (202)
Q Consensus 88 ~YLlqv~pp~~~~pe~vr~~~~~~nit~Agi~~d~~-f~~--~~ky~~ll~--~~p~rh~~~~~~-~~~~~~~~~~~~~~ 161 (202)
+|...+.+........+...+...+....++++.++ |.- -..|+..|+ .++..-.. ..+ ...++..|+.++++
T Consensus 109 ~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~-~~~~~~~d~~~~v~~~~~ 187 (336)
T cd06360 109 PNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKEL-WVPFGTSDFASYLAQIPD 187 (336)
T ss_pred CcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEE-ecCCCCcchHHHHHHHHh
Confidence 677777766554444445556666777777776543 321 134555554 33322111 112 35788888888887
Q ss_pred CceeeeeeecchhhHHHHHhhhhhhhccc
Q psy12232 162 LDIVNYFILGRLQTIKMILDSANVNKFFG 190 (202)
Q Consensus 162 ~d~~n~f~~g~~~~~~~~l~~~~~~~~~~ 190 (202)
...-=-++.+.......++..+....+-+
T Consensus 188 ~~pd~v~~~~~~~~~~~~~~~~~~~g~~~ 216 (336)
T cd06360 188 DVPDAVFVFFAGGDAIKFVKQYDAAGLKA 216 (336)
T ss_pred cCCCEEEEecccccHHHHHHHHHHcCCcc
Confidence 75322355566666777777777666643
No 136
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=20.61 E-value=17 Score=18.04 Aligned_cols=8 Identities=38% Similarity=0.978 Sum_probs=5.4
Q ss_pred HHHhchhc
Q psy12232 7 MRDCWSYV 14 (202)
Q Consensus 7 M~~CW~~d 14 (202)
|+-||+..
T Consensus 1 m~l~wqks 8 (12)
T PF08247_consen 1 MELCWQKS 8 (12)
T ss_pred CceeEeee
Confidence 56688754
No 137
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.24 E-value=3.4e+02 Score=23.40 Aligned_cols=107 Identities=7% Similarity=0.066 Sum_probs=59.9
Q ss_pred ccceEeeCCCCCChHHHHHHH-HHHhcCCcceeecccc-c--ccchhhhhhhccCCccccc-cCCC-cchhHHHHHhhcc
Q psy12232 87 MKYLIQVNPPGDILPEVIRAI-ILMQNITDAGILFDDS-F--IFDHKYKSLLQNIPTRHII-APVE-DSRSVKRQLFRFK 160 (202)
Q Consensus 87 ~~YLlqv~pp~~~~pe~vr~~-~~~~nit~Agi~~d~~-f--~~~~ky~~ll~~~p~rh~~-~~~~-~~~~~~~~~~~~~ 160 (202)
.+|.+...|+.......+... ..+.+....++++.++ | ..-..++..|+..-..-+. .... ...++..++.+++
T Consensus 108 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~ 187 (340)
T cd06349 108 GDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLR 187 (340)
T ss_pred CCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHH
Confidence 456655554433333323333 3445666666766543 2 1223455555521111110 0011 2467888888888
Q ss_pred cCceeeeeeecchhhHHHHHhhhhhhhcccccc
Q psy12232 161 DLDIVNYFILGRLQTIKMILDSANVNKFFGRKF 193 (202)
Q Consensus 161 ~~d~~n~f~~g~~~~~~~~l~~~~~~~~~~~~~ 193 (202)
.-+.-=.++.|....+..++.++...++..+-+
T Consensus 188 ~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (340)
T cd06349 188 DANPDAIILISYYNDGAPIARQARAVGLDIPVV 220 (340)
T ss_pred hcCCCEEEEccccchHHHHHHHHHHcCCCCcEE
Confidence 876666788888888899999988877765433
Done!