RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12232
(202 letters)
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 39.8 bits (92), Expect = 9e-05
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILTVTANEYLGQEYLELEAPLLD 53
YE+M CW A RP F +LVS++ I + ++G+ Y+ + A ++
Sbjct: 264 YEVMLKCWHPKAEMRPSFSELVSRISAIF----STFIGEHYVHVNATYVN 309
>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 38.3 bits (88), Expect = 3e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILTVTA 36
Y +MRDCW V S+RP F QLV LDRI+ +T+
Sbjct: 267 YMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 299
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 35.5 bits (81), Expect = 0.002
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILTVTANEYLGQEYLELEAPLLDTPPSSEDESN 63
Y +M CW A RP+F +L+ + ++ Q YL ++ PS D +
Sbjct: 243 YMIMVKCWMIDADSRPKFRELIIEFSKMARDP------QRYLVIQGDERMHLPSPTDSNF 296
Query: 64 DDEETCAYLLESVI 77
++ V+
Sbjct: 297 YRALMDEEDMDDVV 310
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 35.0 bits (80), Expect = 0.003
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILTVT 35
Y+LMR CW +RP F L S L+ T T
Sbjct: 240 YQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 34.7 bits (79), Expect = 0.004
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILTVTANEYLGQEYL 45
++LM CW ERP F L + L+ T T +Y E L
Sbjct: 244 HDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQPGENL 285
>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 262
Score = 34.2 bits (78), Expect = 0.006
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILT 33
YE+M++CW A+ RP F+QL +L+ I T
Sbjct: 230 YEVMKNCWHLDAAMRPSFLQLREQLEHIKT 259
>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 311
Score = 34.0 bits (77), Expect = 0.009
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILTVTAN 37
Y++M+ CW +RP F Q+V +++ ++ + N
Sbjct: 278 YDIMKTCWDADPLKRPTFKQIVQLIEKQISESTN 311
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 283
Score = 33.7 bits (76), Expect = 0.010
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
Y+LM CW + RP+F +VS LD+++
Sbjct: 243 YQLMMQCWQQERARRPKFADIVSILDKLI 271
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 301
Score = 33.7 bits (76), Expect = 0.010
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
Y LMR CWS + ++RP F + L R+
Sbjct: 272 YNLMRLCWSKLPADRPSFCSIHRILQRMC 300
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 33.7 bits (76), Expect = 0.010
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
Y+ M DCW S+RP F +LV L +L
Sbjct: 267 YQTMLDCWHGEPSQRPTFSELVEHLGNLL 295
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 299
Score = 33.6 bits (76), Expect = 0.013
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
++LM DCW + RP+F Q+V+ LD+++
Sbjct: 263 HQLMLDCWQKDRNHRPKFGQIVNTLDKMI 291
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 33.2 bits (75), Expect = 0.014
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
Y+LMR CW ERP F Q++ L+R+L
Sbjct: 256 YDLMRQCWREKPYERPSFAQILVSLNRML 284
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 303
Score = 33.3 bits (75), Expect = 0.014
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
++MR+CW + R +++ L ++
Sbjct: 268 AKIMRECWYANGAARLTALRIKKTLSQLS 296
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 33.2 bits (75), Expect = 0.016
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILTVTANEYLGQEY 44
Y LM DCW Y +RP+F+ + ++ A++ G +
Sbjct: 242 YALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGHHH 282
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 33.2 bits (75), Expect = 0.016
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
Y LM CW+Y S RP F +L ++L IL
Sbjct: 239 YSLMTKCWAYDPSRRPRFTELKAQLSTIL 267
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
sapiens) [TaxId: 9606]}
Length = 263
Score = 32.0 bits (72), Expect = 0.032
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
Y++M CW +RP F +L+ +L I
Sbjct: 232 YQIMNHCWKERPEDRPAFSRLLRQLAEIA 260
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 287
Score = 32.0 bits (72), Expect = 0.037
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
YELMR CW + S+RP F ++ + +
Sbjct: 246 YELMRACWQWNPSDRPSFAEIHQAFETMF 274
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 276
Score = 31.9 bits (72), Expect = 0.040
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
LM +C ERP F Q+++ ++ +
Sbjct: 243 KRLMAECLKKKRDERPLFPQILASIELLA 271
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 31.2 bits (70), Expect = 0.062
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRILTVTANE 38
Y+LM CW+Y RP F + +L NE
Sbjct: 240 YDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNE 274
>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 308
Score = 30.6 bits (68), Expect = 0.10
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
+ELMR CW Y RP F++++S + +
Sbjct: 265 FELMRMCWQYNPKMRPSFLEIISSIKEEM 293
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 29.3 bits (65), Expect = 0.24
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRI 31
Y +M CW A ERP F L+S + +
Sbjct: 231 YTIMYSCWHEKADERPTFKILLSNILDV 258
>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 293
Score = 29.4 bits (65), Expect = 0.30
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
Y+ M + P++ L ++L
Sbjct: 249 YKYMHYARNLAFDATPDYDYLQGLFSKVL 277
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 29.0 bits (64), Expect = 0.32
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRIL 32
+ C S ++P++ L +
Sbjct: 249 ATYLNFCRSLRFDDKPDYSYLRQLFRNLF 277
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 325
Score = 29.0 bits (64), Expect = 0.34
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLD 29
Y +M+ CW++ + +RP F L S L
Sbjct: 297 YIIMQSCWAFDSRKRPSFPNLTSFLG 322
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 29.0 bits (64), Expect = 0.34
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 4 YELMRDCWSYVASERPEFIQLVSKLDRI 31
Y +M CW++ +RP F+ L L
Sbjct: 245 YNVMVQCWAHKPEDRPTFVALRDFLLEA 272
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 26.3 bits (58), Expect = 2.5
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 110 MQNITDAGILFDDSFIFDHKYKSLLQNIPTRHIIA----PVEDSRSV----KRQLFRFKD 161
M+N D + D K+K L+Q ++ P +D+R + +F F
Sbjct: 119 MRNALD-----GNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFP- 172
Query: 162 LDIVNYFILGRLQTIKMILDSANVNKFFGR 191
N F + ++ N FF R
Sbjct: 173 ----NAFPFDKNGNPVYEINDKNWKCFFER 198
>d2nvna1 d.18.1.3 (A:1-121) Hypothetical protein syc2379_c
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 121
Score = 25.1 bits (55), Expect = 3.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 15 ASERPEFIQLVSKLDRILTVTANEYLGQEYLELEA 49
A+E +F +LV +L + A E + +E L++EA
Sbjct: 37 AAEMADFCRLVQQLAETIAAIAPELMPEERLQIEA 71
>d2it9a1 d.18.1.3 (A:1-122) Hypothetical protein PMN2A_0962
{Prochlorococcus marinus [TaxId: 1219]}
Length = 122
Score = 25.1 bits (55), Expect = 4.4
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 15 ASERPEFIQLVSKLDRILTVTANEYLGQEYLELEA 49
SE +++V +L + + +G E + LE
Sbjct: 35 KSEWKILVEVVMELCDQYKLVKEQLMGDEDITLEL 69
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 24.9 bits (54), Expect = 7.2
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 6 LMRDCWSYVASERPEFIQLVSKLDRILTVTANEYLGQEYLELEAP 50
+RD + EF +LV ++ ++ L E +E+E P
Sbjct: 17 YIRD----KNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETP 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.401
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 757,088
Number of extensions: 34757
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 33
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)