BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12238
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VV43|Y4893_DROME TPPP family protein CG4893 OS=Drosophila melanogaster GN=CG4893
PE=2 SV=1
Length = 192
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 95/159 (59%), Positives = 118/159 (74%), Gaps = 11/159 (6%)
Query: 18 LGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKI 77
+ FS FK FSKFGD+KSDGKL+TLSQSDKWMKQAKVID KK+TTTDTGIHFKKFK++KI
Sbjct: 35 VSFSDQFKAFSKFGDSKSDGKLITLSQSDKWMKQAKVID-KKITTTDTGIHFKKFKAMKI 93
Query: 78 GLSDYQKFIESLAKHKSVPEYDV---WAS-------KNSEAQIQNTISRLTDPSRYTGSH 127
LSDY KF++ LAK K V ++ AS S + + RLTD S+YTGSH
Sbjct: 94 SLSDYNKFLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYTGSH 153
Query: 128 KLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDKTH 166
K RFD +GKGKG+AGR++ V+ +GYV GYQ++++YD H
Sbjct: 154 KERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAH 192
>sp|Q9BW30|TPPP3_HUMAN Tubulin polymerization-promoting protein family member 3 OS=Homo
sapiens GN=TPPP3 PE=1 SV=1
Length = 176
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 18/165 (10%)
Query: 17 FLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLK 76
G +F+ F+ GD K+ G+ + K K KV DGK VT TD I F K K
Sbjct: 7 MAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKS 66
Query: 77 IGLSDYQKF---IESLA----KHKSVPE-YD----VWASKN------SEAQIQNTISRLT 118
+ +Y++F +E LA K KS E +D + A K ++A+ + RLT
Sbjct: 67 ARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRLT 126
Query: 119 DPSRYTGSHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYD 163
D SRYTGSHK RFDE+GKGKG+AGR+D ++ +GYV Y+N +YD
Sbjct: 127 DTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYD 171
>sp|Q9CRB6|TPPP3_MOUSE Tubulin polymerization-promoting protein family member 3 OS=Mus
musculus GN=Tppp3 PE=1 SV=1
Length = 176
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 93/165 (56%), Gaps = 18/165 (10%)
Query: 17 FLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLK 76
G +F+ F+ GD K+ G+ + K K KV DGK VT TD I F K K+
Sbjct: 7 IAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKS 66
Query: 77 IGLSDYQKF---IESLA----KHKSVPE-YD----VWASKN------SEAQIQNTISRLT 118
+ +Y++F +E LA K KS E +D + A K ++A+ + RLT
Sbjct: 67 ARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLIAGKEPANIGVTKAKTGGAVDRLT 126
Query: 119 DPSRYTGSHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYD 163
D S+YTGSHK RFDE+GKGKG+AGR+D ++ +GYV Y+N +YD
Sbjct: 127 DTSKYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYD 171
>sp|Q7TQD2|TPPP_MOUSE Tubulin polymerization-promoting protein OS=Mus musculus GN=Tppp
PE=1 SV=1
Length = 218
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLS 80
F+ F+ GDT++ GK + K K VIDGK VT TD I F K K I
Sbjct: 54 FRRFAVHGDTRATGKEMHGKNWSKLCKDCHVIDGKNVTVTDVDIVFSKIKGKSCRTITFE 113
Query: 81 DYQKFIESLAK---------------HKSVPEYDVWASKNSEAQIQNTISRLTDPSRYTG 125
+Q+ +E LAK H+ + S ++A T+SRLTD S++TG
Sbjct: 114 QFQEALEELAKKRFKDKSSEEAVREVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTG 173
Query: 126 SHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDK 164
SHK RFD++GKGKG AGR D V+ +GYV GY++ +YD+
Sbjct: 174 SHKERFDQSGKGKGKAGRVDLVDESGYVPGYKHAGTYDQ 212
>sp|Q3ZCC8|TPPP3_BOVIN Tubulin polymerization-promoting protein family member 3 OS=Bos
taurus GN=TPPP3 PE=1 SV=1
Length = 176
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 92/163 (56%), Gaps = 18/163 (11%)
Query: 19 GFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIG 78
G +F+ F+ GD K+ G + K K KV DGK VT TD I F K K+
Sbjct: 9 GLEESFRKFAIHGDPKASGHEMNGKNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKSAR 68
Query: 79 LSDYQKF---IESLA----KHKSVPE-YD----VWASKN------SEAQIQNTISRLTDP 120
+ +Y++F +E LA K KS E +D + A K ++A+ + RLTD
Sbjct: 69 VINYEEFKKALEELAPKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGAVERLTDT 128
Query: 121 SRYTGSHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYD 163
S+YTGSHK RFDE+GKGKG+AGR+D ++ +GYV Y+N +YD
Sbjct: 129 SKYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYD 171
>sp|Q5PPN5|TPPP3_RAT Tubulin polymerization-promoting protein family member 3 OS=Rattus
norvegicus GN=Tppp3 PE=2 SV=1
Length = 176
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 93/165 (56%), Gaps = 18/165 (10%)
Query: 17 FLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLK 76
G +F+ F+ GD K+ G+ + K K KV DGK VT TD I F K K+
Sbjct: 7 IAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKS 66
Query: 77 IGLSDYQKF---IESLA----KHKSVPE-YD----VWASKN------SEAQIQNTISRLT 118
+ +Y++F +E LA K K+ E +D + A K ++A+ + RLT
Sbjct: 67 ARVINYEEFKKALEELATKRFKGKTKEEAFDAICQLIAGKEPANIGVTKAKTGGAVDRLT 126
Query: 119 DPSRYTGSHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYD 163
D S+YTGSHK RFDE+GKGKG+AGR+D ++ +GYV Y+N +YD
Sbjct: 127 DTSKYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYD 171
>sp|Q3T077|TPPP2_BOVIN Tubulin polymerization-promoting protein family member 2 OS=Bos
taurus GN=TPPP2 PE=2 SV=1
Length = 171
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 18/159 (11%)
Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIGLSDYQ 83
F+ F+ FG++ S G + K K ++DGK VT+TD I F K K+ +Q
Sbjct: 9 FQRFAVFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQ 68
Query: 84 KFIESLA-------KHKSVPE-----YDVWASKN------SEAQIQNTISRLTDPSRYTG 125
+F E++ K KS E Y + K+ ++A +SRLTD S+YTG
Sbjct: 69 QFQEAMKELGQKRFKGKSPDEALENIYKLMEGKDPATTGVTKATTVGGVSRLTDTSKYTG 128
Query: 126 SHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDK 164
+HK RFDE+GKGKG+AGR+D + +GYV GY+ +YDK
Sbjct: 129 THKERFDESGKGKGIAGREDVTDNSGYVSGYKGAGTYDK 167
>sp|O94811|TPPP_HUMAN Tubulin polymerization-promoting protein OS=Homo sapiens GN=TPPP
PE=1 SV=1
Length = 219
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 18/159 (11%)
Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLS 80
F+ F+ GD ++ G+ + K K +VIDG+ VT TD I F K K I
Sbjct: 55 FRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFE 114
Query: 81 DYQKFIESLAK---------------HKSVPEYDVWASKNSEAQIQNTISRLTDPSRYTG 125
+Q+ +E LAK H+ + S ++A T+SRLTD +++TG
Sbjct: 115 QFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTG 174
Query: 126 SHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDK 164
SHK RFD +GKGKG AGR D V+ +GYV GY++ +YD+
Sbjct: 175 SHKERFDPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQ 213
>sp|Q27957|TPPP_BOVIN Tubulin polymerization-promoting protein OS=Bos taurus GN=TPPP PE=1
SV=1
Length = 218
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 18/159 (11%)
Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLS 80
F+ F+ GD ++ G+ + K + +VIDG+ VT TD I F K K I
Sbjct: 54 FRKFAVHGDARASGREMHGKNWSKLCRDCQVIDGRSVTVTDVDIVFSKIKGKSCRTITFE 113
Query: 81 DYQKFIESLAK---------------HKSVPEYDVWASKNSEAQIQNTISRLTDPSRYTG 125
+++ +E LAK HK + S ++A T+SRLTD S++TG
Sbjct: 114 QFKEALEELAKKRFKDKSAEEAVREVHKLIEGKAPIISGVTKAISSPTVSRLTDTSKFTG 173
Query: 126 SHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDK 164
SHK RFD +G+GKG AGR D V+ +GYV GY++ +YD+
Sbjct: 174 SHKERFDPSGRGKGRAGRVDLVDESGYVPGYKHAGTYDQ 212
>sp|Q0P5Y3|TPPP2_MOUSE Tubulin polymerization-promoting protein family member 2 OS=Mus
musculus GN=Tppp2 PE=2 SV=1
Length = 170
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIGLSDYQ 83
F F+ FG++ S K +T K K ++DGK VT+TD I F K K+ ++Q
Sbjct: 9 FHRFAVFGESSSSSKEITNKNFSKLCKDCDIMDGKAVTSTDVDIVFSKVKAKNARTINFQ 68
Query: 84 KFIESLA-------KHKSVPEY-----------DVWASKNSEAQIQNTISRLTDPSRYTG 125
+F E++ K K+ E D + +++ + RLTD S+YTG
Sbjct: 69 QFQEAMKELGQKRFKGKNPDEALQGVFKLMEGKDPATTGVTKSTTVGGVDRLTDTSKYTG 128
Query: 126 SHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDK 164
+HK RFDE+GKGKG+ GR+++ + +GYV GY+ +YDK
Sbjct: 129 THKERFDESGKGKGIEGREETTDNSGYVSGYKGAGTYDK 167
>sp|P59282|TPPP2_HUMAN Tubulin polymerization-promoting protein family member 2 OS=Homo
sapiens GN=TPPP2 PE=2 SV=2
Length = 170
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 18/159 (11%)
Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIGLSDYQ 83
F F+ FG++ S G + K K ++DGK VT+TD I F K K+ +Q
Sbjct: 9 FHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQ 68
Query: 84 KFIESLA-------KHKSVPE-----YDVWASKNSEAQIQ------NTISRLTDPSRYTG 125
+F E++ K KS E Y + K+ + RLTD S+YTG
Sbjct: 69 QFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTG 128
Query: 126 SHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDK 164
+HK RFDE+GKGKG+AGR++ + GYV GY+ +YDK
Sbjct: 129 THKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDK 167
>sp|Q2VPM9|TPPP3_XENLA Tubulin polymerization-promoting protein family member 3 OS=Xenopus
laevis GN=tppp3 PE=2 SV=1
Length = 176
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 18/159 (11%)
Query: 23 NFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIGLSDY 82
+F+ F+ +GDTK+ G+ +T K K KV DGK VT TD I F K K+ + Y
Sbjct: 13 SFRKFAIYGDTKATGQEMTGKNWSKLCKDCKVNDGKAVTGTDVDIVFSKVKAKSARVITY 72
Query: 83 QKFIESL------------------AKHKSVPEYDVWASKNSEAQIQNTISRLTDPSRYT 124
++F ++L A K V + ++ ++A + RLTD S+YT
Sbjct: 73 EEFTKALEELSAKRFKGKSKEEAYEAICKLVAGKEPVSAGITKAAATGAVDRLTDTSKYT 132
Query: 125 GSHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYD 163
GSHK RFD+ GKGKG +GR+ VE GYV Y+ +YD
Sbjct: 133 GSHKERFDQTGKGKGKSGRETIVENTGYVGSYKLAGTYD 171
>sp|Q4R3A0|TPPP2_MACFA Tubulin polymerization-promoting protein family member 2 OS=Macaca
fascicularis GN=TPPP2 PE=2 SV=1
Length = 170
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIGLSDYQ 83
F F+ FG++ S G + K K ++DGK VT+TD I F K K+ +Q
Sbjct: 9 FNRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQ 68
Query: 84 KFIESLA-------KHKSVPE-----YDVWASKNSEAQIQ------NTISRLTDPSRYTG 125
+F E++ K KS E Y + K+ + RLTD S+YTG
Sbjct: 69 QFKEAVKELGQKRFKGKSPDEVLESIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTG 128
Query: 126 SHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDK 164
+HK RFDE+GKGKG+AGR+ + GYV GY+ +YDK
Sbjct: 129 THKERFDESGKGKGIAGREVMNDNTGYVSGYKGAGTYDK 167
>sp|P91127|YBYK_CAEEL TPPP family protein C32E8.3 OS=Caenorhabditis elegans GN=C32E8.3
PE=1 SV=1
Length = 180
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 22/160 (13%)
Query: 27 FSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLK--IGLSDYQK 84
F+KFG + +T DKW+K A V+D K +T T TGI F K K + +K
Sbjct: 21 FTKFG--AATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDETKK 78
Query: 85 FI----ESLAKHKSVP---EYDVWASKNSEAQIQNTI-----------SRLTDPSRYTGS 126
+ E A+ P E D K ++ + + SRLTD ++YTG+
Sbjct: 79 VLAFVAEDRARQSKKPIQDELDAITEKLAKLEAPSVGGAAKANAAGVYSRLTDHTKYTGA 138
Query: 127 HKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDKTH 166
HK RFD GKGKG +GR D+ E GYV Y+N++SYDKTH
Sbjct: 139 HKERFDAEGKGKGKSGRADTTENTGYVGAYKNKDSYDKTH 178
>sp|A4IIY2|TPPP3_XENTR Tubulin polymerization-promoting protein family member 3 OS=Xenopus
tropicalis GN=tppp3 PE=2 SV=1
Length = 176
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 20 FSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFK---SLK 76
+F+ F+ +GDTK+ G+ +T K K KVIDGK VT TD I F K K +
Sbjct: 10 LEESFRKFAIYGDTKATGQEMTGKNWAKLCKDCKVIDGKSVTGTDVDIVFSKVKGKSARV 69
Query: 77 IGLSDYQKFIESLA----KHKSVPE-YD-----VWASKNSEAQIQ-----NTISRLTDPS 121
I +++K +E L+ K KS E Y+ V + A I + RLTD S
Sbjct: 70 ITCEEFKKALEELSGKRFKGKSKEEAYEAICKLVVGKEPVSAGITKPAATGAVDRLTDTS 129
Query: 122 RYTGSHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYD 163
+YTGSHK RFDE+GKGKG GR+ VE GYV Y+ +YD
Sbjct: 130 KYTGSHKERFDESGKGKGKGGRETIVENTGYVSSYKLAGTYD 171
>sp|A4R017|M28P2_MAGO7 Probable zinc metalloprotease MGG_02107 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MGG_02107
PE=3 SV=1
Length = 502
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 111 QNTISRLTDPSRYTGSHKLRFDEAGKG-KGLAGRKDSVEAAGYVQGYQNRNSY 162
++T+S TDP+R G+ + E +G AG + V GYVQG +R S+
Sbjct: 104 RHTLSTQTDPTRGIGAARDWIAEEMRGYAATAGGRMEVTVPGYVQGVASRISF 156
>sp|Q3JAF0|LPTD_NITOC LPS-assembly protein LptD OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=lptD PE=3 SV=1
Length = 738
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 60 VTTTDTGIHFKKFKSLKIGLSDYQKFIESLAKHKSVPEYDVWA-SKNSEAQIQNTISRLT 118
+ + DTG F++ SL + SD ++ +E A + VP D A A + SRL
Sbjct: 465 IVSMDTGAIFER--SLTLWGSDLRQTLEPRAYYLYVPFEDQSAFPVFDSAPLDFYFSRLF 522
Query: 119 DPSRYTGSHKL 129
P+R+TG+ +L
Sbjct: 523 QPNRFTGADRL 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,791,272
Number of Sequences: 539616
Number of extensions: 2287095
Number of successful extensions: 5689
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5656
Number of HSP's gapped (non-prelim): 22
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)