Query psy12238
Match_columns 166
No_of_seqs 124 out of 204
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 22:19:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4070|consensus 100.0 3.2E-63 6.9E-68 395.6 11.0 150 17-166 11-178 (180)
2 PF05517 p25-alpha: p25-alpha 100.0 2.6E-53 5.6E-58 335.8 7.9 141 20-166 1-154 (154)
3 cd05025 S-100A1 S-100A1: S-100 96.4 0.0065 1.4E-07 43.3 4.9 75 13-92 4-84 (92)
4 cd05027 S-100B S-100B: S-100B 96.4 0.0064 1.4E-07 43.9 4.6 76 13-92 3-83 (88)
5 cd05026 S-100Z S-100Z: S-100Z 95.6 0.035 7.6E-07 40.1 5.4 74 13-91 5-84 (93)
6 cd05030 calgranulins Calgranul 95.5 0.028 6.1E-07 40.2 4.6 74 13-92 3-83 (88)
7 cd00213 S-100 S-100: S-100 dom 95.4 0.05 1.1E-06 38.1 5.5 73 15-92 5-83 (88)
8 cd05031 S-100A10_like S-100A10 95.2 0.035 7.5E-07 39.8 4.4 73 13-90 3-81 (94)
9 cd05029 S-100A6 S-100A6: S-100 95.1 0.055 1.2E-06 39.0 5.2 74 13-92 5-83 (88)
10 cd05022 S-100A13 S-100A13: S-1 95.1 0.048 1E-06 39.7 4.8 71 13-92 3-79 (89)
11 smart00027 EH Eps15 homology d 94.5 0.071 1.5E-06 38.2 4.3 66 17-93 9-77 (96)
12 cd05023 S-100A11 S-100A11: S-1 93.6 0.21 4.6E-06 36.1 5.4 75 13-92 4-84 (89)
13 KOG0030|consensus 93.1 0.35 7.6E-06 39.0 6.3 81 17-106 10-95 (152)
14 cd05024 S-100A10 S-100A10: A s 92.9 0.22 4.8E-06 36.9 4.6 72 13-91 3-79 (91)
15 cd00052 EH Eps15 homology doma 89.6 0.62 1.3E-05 30.0 3.8 61 21-92 2-65 (67)
16 PTZ00183 centrin; Provisional 89.5 0.48 1E-05 35.3 3.6 60 19-87 91-153 (158)
17 COG5126 FRQ1 Ca2+-binding prot 88.5 0.97 2.1E-05 36.6 4.9 88 6-104 8-97 (160)
18 PTZ00184 calmodulin; Provision 86.9 0.82 1.8E-05 33.3 3.4 59 19-86 85-146 (149)
19 PF13833 EF-hand_8: EF-hand do 85.0 0.59 1.3E-05 29.6 1.6 47 39-88 4-53 (54)
20 cd00051 EFh EF-hand, calcium b 83.9 1.3 2.9E-05 26.6 2.8 58 20-86 2-62 (63)
21 PF09279 EF-hand_like: Phospho 83.6 0.82 1.8E-05 31.7 1.9 60 19-86 1-67 (83)
22 PLN02964 phosphatidylserine de 83.4 2.1 4.5E-05 41.6 5.2 70 9-90 134-209 (644)
23 PTZ00183 centrin; Provisional 81.6 2.5 5.4E-05 31.3 4.1 64 17-89 16-82 (158)
24 KOG0037|consensus 75.9 5.6 0.00012 34.0 4.9 69 12-89 118-189 (221)
25 KOG0027|consensus 75.6 4.5 9.8E-05 31.0 3.9 66 17-91 7-75 (151)
26 PF13499 EF-hand_7: EF-hand do 74.7 1 2.2E-05 29.4 0.1 61 20-85 2-65 (66)
27 PF13467 RHH_4: Ribbon-helix-h 63.9 11 0.00025 26.3 3.5 26 80-106 20-45 (67)
28 PTZ00184 calmodulin; Provision 57.2 24 0.00052 25.4 4.5 63 18-89 11-76 (149)
29 KOG0027|consensus 48.8 25 0.00053 26.9 3.5 60 18-86 85-147 (151)
30 PF02671 PAH: Paired amphipath 48.4 31 0.00068 21.5 3.4 27 79-107 4-30 (47)
31 PF13405 EF-hand_6: EF-hand do 45.1 33 0.00072 19.4 2.9 30 19-53 1-31 (31)
32 KOG0751|consensus 42.1 56 0.0012 31.7 5.4 80 9-93 99-180 (694)
33 PF01023 S_100: S-100/ICaBP ty 37.6 1E+02 0.0022 19.5 4.5 35 14-51 2-36 (44)
34 PF10723 RepB-RCR_reg: Replica 32.5 71 0.0015 23.1 3.6 26 81-107 51-76 (84)
35 PF07406 NICE-3: NICE-3 protei 30.0 68 0.0015 26.5 3.5 75 14-91 101-185 (186)
36 KOG4426|consensus 27.8 63 0.0014 31.1 3.2 21 8-28 589-609 (656)
37 COG5126 FRQ1 Ca2+-binding prot 26.8 71 0.0015 25.9 3.0 60 18-86 92-154 (160)
38 COG3753 Uncharacterized protei 26.5 57 0.0012 26.2 2.3 42 76-119 78-124 (143)
39 PF12668 DUF3791: Protein of u 25.9 94 0.002 20.7 3.1 21 85-106 7-27 (62)
40 PF04844 Ovate: Transcriptiona 25.7 1.2E+02 0.0026 20.7 3.6 29 78-106 4-32 (59)
41 PF05746 DALR_1: DALR anticodo 25.1 82 0.0018 22.5 2.9 19 10-28 58-76 (119)
42 KOG0044|consensus 24.3 1E+02 0.0022 25.7 3.5 67 19-92 27-96 (193)
43 PF13124 DUF3963: Protein of u 23.3 56 0.0012 20.8 1.4 20 5-24 1-20 (40)
44 PF07335 Glyco_hydro_75: Funga 22.2 1.7E+02 0.0038 23.5 4.4 63 27-91 79-150 (156)
45 PF14666 RICTOR_M: Rapamycin-i 22.0 61 0.0013 27.4 1.9 36 40-75 1-36 (226)
46 PF01402 RHH_1: Ribbon-helix-h 21.9 1.6E+02 0.0035 17.2 3.3 24 82-106 10-33 (39)
47 KOG0034|consensus 20.6 1.4E+02 0.003 24.6 3.7 66 19-89 31-96 (187)
48 PF10429 Mtr2: Nuclear pore RN 20.4 34 0.00074 28.1 0.0 12 128-139 89-101 (166)
49 PLN02222 phosphoinositide phos 20.2 1.1E+02 0.0025 29.5 3.5 61 18-87 25-89 (581)
No 1
>KOG4070|consensus
Probab=100.00 E-value=3.2e-63 Score=395.62 Aligned_cols=150 Identities=44% Similarity=0.704 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeecccC---ccCHHHHHHHHHHHHHhc
Q psy12238 17 FLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSL---KIGLSDYQKFIESLAKHK 93 (166)
Q Consensus 17 ~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~k---~I~f~qF~~aL~~lA~kk 93 (166)
++.|++.|++|+.||+++++|+||+++||+||||||+|||||.||.|||||+|+|||++ .|+|+||.++|++||+++
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R 90 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKR 90 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhh
Confidence 46799999999999999999999999999999999999999999999999999999984 899999999999999887
Q ss_pred CCC-----hHHHHHHHhhh----------hccccccccccCCCCCccccccccCCCCCCCCcCCccccccCccccccCCC
Q psy12238 94 SVP-----EYDVWASKNSE----------AQIQNTISRLTDPSRYTGSHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQN 158 (166)
Q Consensus 94 ~~~-----~~~ei~~kl~~----------~t~~~~v~rltD~S~YTGsHKerfd~~g~gkg~~gr~~~~d~sGyv~gyk~ 158 (166)
... ++++|.++|+. +.++++|+||||+|+||||||||||+||+||||+||.+++|+||||+||||
T Consensus 91 ~k~Ks~ee~l~~I~~llagkaP~~~gvtka~t~gavdRLTDtskyTGsHKErFD~sGKGKGiaGR~d~~d~sGYVs~Yk~ 170 (180)
T KOG4070|consen 91 FKGKSKEEALDAICQLLAGKAPAVVGVTKAKTAGAVDRLTDTSKYTGSHKERFDESGKGKGIAGRQDITDNSGYVSAYKN 170 (180)
T ss_pred hcCCCHHHHHHHHHHHHhccCCcccchhhccccccccccccccccccchhhhcCcccCcCCcccccccccCCcceeeccC
Confidence 532 57889988862 567789999999999999999999999999999999999999999999999
Q ss_pred CCccccCC
Q psy12238 159 RNSYDKTH 166 (166)
Q Consensus 159 ~~tyd~~~ 166 (166)
+||||++|
T Consensus 171 ~gTYD~k~ 178 (180)
T KOG4070|consen 171 AGTYDKKV 178 (180)
T ss_pred CCchhhhc
Confidence 99999986
No 2
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=100.00 E-value=2.6e-53 Score=335.76 Aligned_cols=141 Identities=40% Similarity=0.632 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeecccC---ccCHHHHHHHHHHHHHhcCCC
Q psy12238 20 FSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSL---KIGLSDYQKFIESLAKHKSVP 96 (166)
Q Consensus 20 L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~k---~I~f~qF~~aL~~lA~kk~~~ 96 (166)
|+++|++||+|| +..+.+|++++|+||||||+|||+ +||+|||||||+|||++ +|+|+||++||++||+++++.
T Consensus 1 L~~~F~~f~~fG--~~~~~~m~~~~F~Kl~kD~~i~d~-k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~ 77 (154)
T PF05517_consen 1 LEAVFKAFASFG--KKNGTEMDSKNFAKLCKDCGIIDK-KLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKD 77 (154)
T ss_dssp HHHHHHHHHCSS--TSTSSEEEHHHHHHHHHHTSS--S-SS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHhc--CCccccccHHHHHHHHHHcCCCCC-CCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcc
Confidence 789999999999 556899999999999999999994 59999999999999974 799999999999999999874
Q ss_pred --hHHHHHHHhhh-------h-ccccccccccCCCCCccccccccCCCCCCCCcCCccccccCccccccCCCCCccccCC
Q psy12238 97 --EYDVWASKNSE-------A-QIQNTISRLTDPSRYTGSHKLRFDEAGKGKGLAGRKDSVEAAGYVQGYQNRNSYDKTH 166 (166)
Q Consensus 97 --~~~ei~~kl~~-------~-t~~~~v~rltD~S~YTGsHKerfd~~g~gkg~~gr~~~~d~sGyv~gyk~~~tyd~~~ 166 (166)
++++|.++|++ + +++++|+||||+|+||||||||||++|+|+||+||++++|++ +|||++||||++|
T Consensus 78 ~~~~~~~~~kl~~~~~P~~~g~~~~~~v~rltD~s~YTG~hk~rf~~~g~g~g~~gr~~~~d~s---~~y~~~~~~~~~~ 154 (154)
T PF05517_consen 78 KSSAEELKEKLTAGGGPSASGATKAGAVDRLTDKSTYTGSHKERFDETGDGKGLAGREDLVDRS---SGYKGAGTYDKKH 154 (154)
T ss_dssp CTHHHHHHHHHHTT--SSSSS-TTS------SSSS-STTS---SS-SSS--TTTTT-------S----TTS-BTTB--T-
T ss_pred cccHHHHHHHHHccCccccccccccccccccCCCCccchhhhhcCCCCCCCCCccchhhhccCC---CCCCCCCccCCCC
Confidence 68999999953 4 788999999999999999999999999999999999999999 9999999999997
No 3
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.44 E-value=0.0065 Score=43.31 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHH-hcCCCCCCCccccchhHHHHhhh-cCc-cCCCCCCccccceeeeeccc---CccCHHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFS-KFGDTKSDGKLLTLSQSDKWMKQ-AKV-IDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa-~fG~~~~~g~eM~~k~F~Kl~KD-~~l-iDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
|-+.+..|.++|+.|. +-|++ ..|+...+..+++. .|. +. ...+..+++-+|..+.. ..|+|++|...+
T Consensus 4 ~e~~~~~l~~~F~~fDd~dg~G----~~Is~~El~~~l~~~lg~~~~-~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 4 LETAMETLINVFHAHSGKEGDK----YKLSKKELKDLLQTELSDFLD-AQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHHHHHhcccCCC----CeECHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 5567888999999996 54443 24999999999985 665 42 45678889999998865 379999999999
Q ss_pred HHHHHh
Q psy12238 87 ESLAKH 92 (166)
Q Consensus 87 ~~lA~k 92 (166)
..+|..
T Consensus 79 ~~~~~~ 84 (92)
T cd05025 79 AALTVA 84 (92)
T ss_pred HHHHHH
Confidence 888754
No 4
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.38 E-value=0.0064 Score=43.94 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHH-hcCCCCCCCccccchhHHHHhhh-cCccCCCCCCccccceeeeeccc---CccCHHHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFS-KFGDTKSDGKLLTLSQSDKWMKQ-AKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIE 87 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa-~fG~~~~~g~eM~~k~F~Kl~KD-~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~ 87 (166)
|-+.+.+|.++|+.|. +=|++ ..|+...+..+++. ++-+=|...|..+|+-++..+.. .+|+|++|...+.
T Consensus 3 le~~~~~l~~aF~~fD~~dgdG----~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 3 LEKAMVALIDVFHQYSGREGDK----HKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHHHhcccCCCc----CEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4567788999999996 33333 25999999999986 22222355688889999998875 3899999999998
Q ss_pred HHHHh
Q psy12238 88 SLAKH 92 (166)
Q Consensus 88 ~lA~k 92 (166)
.+|..
T Consensus 79 ~~~~~ 83 (88)
T cd05027 79 MVTTA 83 (88)
T ss_pred HHHHH
Confidence 88764
No 5
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.57 E-value=0.035 Score=40.11 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCCCCCccccchhHHHHhhhc--CccCCCCCCccccceeeeeccc---CccCHHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFSK-FGDTKSDGKLLTLSQSDKWMKQA--KVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa~-fG~~~~~g~eM~~k~F~Kl~KD~--~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
|-+-+.++.++|+.|+. =|+ |..|+-..+..+++.. ..+. ...+..+++-++..+-. -.|+|++|...+
T Consensus 5 le~a~~~~~~~F~~~dd~dgd----g~~Is~~EL~~ll~~~~~~~~~-~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGD----RYKLSKGELKELLQRELTDFLS-SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCC----CCEECHHHHHHHHHHHhHHhcc-cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 45667889999999983 233 2359999999999763 2333 23366788989998864 389999999999
Q ss_pred HHHHH
Q psy12238 87 ESLAK 91 (166)
Q Consensus 87 ~~lA~ 91 (166)
..||-
T Consensus 80 ~~l~~ 84 (93)
T cd05026 80 AALTV 84 (93)
T ss_pred HHHHH
Confidence 87764
No 6
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.50 E-value=0.028 Score=40.22 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCC----ccccceeeeeccc---CccCHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVT----TTDTGIHFKKFKS---LKIGLSDYQKF 85 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT----~TDvDiiF~KvK~---k~I~f~qF~~a 85 (166)
|-+.+..|-.+|++|+. .......|+...+..+++. .+ |..++ ..+++-+|..+.. ..|+|++|+..
T Consensus 3 ~e~~i~~~~~~f~~y~~---~~~~~~~Is~~El~~ll~~--~~-g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~ 76 (88)
T cd05030 3 LEKAIETIINVFHQYSV---RKGHPDTLYKKEFKQLVEK--EL-PNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVL 76 (88)
T ss_pred HHHHHHHHHHHHHHHhc---cCCCcccCCHHHHHHHHHH--Hh-hHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHH
Confidence 45677888899999984 1111236999999999974 22 24455 7889999999864 38999999999
Q ss_pred HHHHHHh
Q psy12238 86 IESLAKH 92 (166)
Q Consensus 86 L~~lA~k 92 (166)
+..++..
T Consensus 77 ~~~~~~~ 83 (88)
T cd05030 77 VIKVGVA 83 (88)
T ss_pred HHHHHHH
Confidence 9887653
No 7
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.36 E-value=0.05 Score=38.07 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHh--cCCCCCCCccccchhHHHHhhh-cCccCCCCCCccccceeeeeccc---CccCHHHHHHHHHH
Q psy12238 15 KYFLGFSSNFKLFSK--FGDTKSDGKLLTLSQSDKWMKQ-AKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIES 88 (166)
Q Consensus 15 ~~~~~L~~~F~~Fa~--fG~~~~~g~eM~~k~F~Kl~KD-~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~~ 88 (166)
+-+..|.++|..|.. =|++ .|+...+..+++. .+..-+...+..+++-+|..+.. ..|+|++|...+..
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G-----~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKD-----TLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCC-----cCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 446678889999965 2333 3899999999985 44322233567888889888765 38999999999988
Q ss_pred HHHh
Q psy12238 89 LAKH 92 (166)
Q Consensus 89 lA~k 92 (166)
+++.
T Consensus 80 ~~~~ 83 (88)
T cd00213 80 LAVA 83 (88)
T ss_pred HHHH
Confidence 8764
No 8
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.23 E-value=0.035 Score=39.78 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHh-cC-CCCCCCccccchhHHHHhhh-cCccCCCCCCccccceeeeeccc---CccCHHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFSK-FG-DTKSDGKLLTLSQSDKWMKQ-AKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa~-fG-~~~~~g~eM~~k~F~Kl~KD-~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
|-+.++.|.++|..|.. =| ++ .|+...+..+++. .+-.-|..++..+++-+|..+.. ..|+|++|+..+
T Consensus 3 ~~~~~~~l~~~F~~~D~~dg~dG-----~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 3 LEHAMESLILTFHRYAGKDGDKN-----TLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHHHHHhccCCCCC-----eECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 34557788888988864 43 23 3999999999985 43211345778899999988865 389999999887
Q ss_pred HHHH
Q psy12238 87 ESLA 90 (166)
Q Consensus 87 ~~lA 90 (166)
..++
T Consensus 78 ~~~~ 81 (94)
T cd05031 78 AGLS 81 (94)
T ss_pred HHHH
Confidence 6553
No 9
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=95.15 E-value=0.055 Score=39.02 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCCCCCccccchhHHHHhhh-cCccCCCCCCccccceeeeeccc---CccCHHHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFSK-FGDTKSDGKLLTLSQSDKWMKQ-AKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIE 87 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa~-fG~~~~~g~eM~~k~F~Kl~KD-~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~ 87 (166)
|-+.+.+|-++|++|+. =| ..-.|+...|.++++. .. + |.++|..+++-+|..+-. .+|+|++|...+.
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~----~~g~Is~~EL~~~l~~~~~-l-g~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREG----DKNTLSKKELKELIQKELT-I-GSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHHccCC----CCCEECHHHHHHHHHHHHh-c-CCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 45677788899999985 22 1125999999999975 22 3 467899999999988764 3899999999998
Q ss_pred HHHHh
Q psy12238 88 SLAKH 92 (166)
Q Consensus 88 ~lA~k 92 (166)
.+|.-
T Consensus 79 ~l~~~ 83 (88)
T cd05029 79 ALALI 83 (88)
T ss_pred HHHHH
Confidence 88753
No 10
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=95.11 E-value=0.048 Score=39.71 Aligned_cols=71 Identities=24% Similarity=0.243 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCCCCCccccchhHHHHhhh-cCccCCCCCCc-cccceeeeeccc---CccCHHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFSK-FGDTKSDGKLLTLSQSDKWMKQ-AKVIDGKKVTT-TDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa~-fG~~~~~g~eM~~k~F~Kl~KD-~~liDgKkvT~-TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
|-+.+..|.++|+.|.+ =|++ .|+...+-.+++. .| ..+|. .++|-++..+-. ..|+|++|...+
T Consensus 3 lE~ai~~l~~~F~~fd~~~~~g-----~i~~~ELk~ll~~elg----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 3 LEKAIETLVSNFHKASVKGGKE-----SLTASEFQELLTQQLP----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-----eECHHHHHHHHHHHhh----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 45667889999999975 2222 5999999999997 43 34666 788888877654 499999999999
Q ss_pred HHHHHh
Q psy12238 87 ESLAKH 92 (166)
Q Consensus 87 ~~lA~k 92 (166)
..+|..
T Consensus 74 ~~l~~~ 79 (89)
T cd05022 74 GELAKA 79 (89)
T ss_pred HHHHHH
Confidence 887754
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=94.45 E-value=0.071 Score=38.22 Aligned_cols=66 Identities=9% Similarity=0.061 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHHHHHHHhc
Q psy12238 17 FLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIESLAKHK 93 (166)
Q Consensus 17 ~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~~lA~kk 93 (166)
+..+.++|..|..-+++ .|+...+..+++..+ ++..+++-+|..+-. ..|+|++|+.++..+++-.
T Consensus 9 ~~~l~~~F~~~D~d~~G-----~Is~~el~~~l~~~~------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 9 KAKYEQIFRSLDKNQDG-----TVTGAQAKPILLKSG------LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHhCCCCCC-----eEeHHHHHHHHHHcC------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 45688899988654433 389999999998743 566788888888764 4899999999999888764
No 12
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=93.62 E-value=0.21 Score=36.09 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCCCCCccccchhHHHHhhhc--CccCCCCCCccccceeeeeccc---CccCHHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFSK-FGDTKSDGKLLTLSQSDKWMKQA--KVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa~-fG~~~~~g~eM~~k~F~Kl~KD~--~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
|-+-+..|..+|+.|+. -|+ +..|+-.-|..+++.- +++. .+.....++-++..+-. ..|+|++|...+
T Consensus 4 le~~i~~l~~~F~~y~~~dg~----~~~Ls~~Elk~ll~~e~~~~~~-~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGD----SYQLSKTEFLSFMNTELASFTK-NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCC----cCeECHHHHHHHHHHhhhHhhc-CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 45667788999999662 232 2358888999998874 3452 55667778888887644 389999999999
Q ss_pred HHHHHh
Q psy12238 87 ESLAKH 92 (166)
Q Consensus 87 ~~lA~k 92 (166)
..||..
T Consensus 79 ~~l~~~ 84 (89)
T cd05023 79 GGLAVA 84 (89)
T ss_pred HHHHHH
Confidence 888754
No 13
>KOG0030|consensus
Probab=93.09 E-value=0.35 Score=39.04 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc-----CccCHHHHHHHHHHHHH
Q psy12238 17 FLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS-----LKIGLSDYQKFIESLAK 91 (166)
Q Consensus 17 ~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~-----k~I~f~qF~~aL~~lA~ 91 (166)
.++++++|.-|-+=||++ |+..+-.-.+|-.|.- -|..+|=-+-.+.++ ++|+|++|+--++.||+
T Consensus 10 ~~e~ke~F~lfD~~gD~k-----i~~~q~gdvlRalG~n----PT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGK-----ISGSQVGDVLRALGQN----PTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred HHHHHHHHHHHhccCccc-----ccHHHHHHHHHHhcCC----CcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 478999999998877776 7788877777765543 244444334444444 48999999999999999
Q ss_pred hcCCChHHHHHHHhh
Q psy12238 92 HKSVPEYDVWASKNS 106 (166)
Q Consensus 92 kk~~~~~~ei~~kl~ 106 (166)
.|..-++++.++-|.
T Consensus 81 nk~q~t~edfvegLr 95 (152)
T KOG0030|consen 81 NKDQGTYEDFVEGLR 95 (152)
T ss_pred ccccCcHHHHHHHHH
Confidence 987557888887774
No 14
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=92.88 E-value=0.22 Score=36.87 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhh--cCccCCCCCCccccceeeeeccc---CccCHHHHHHHHH
Q psy12238 13 LCKYFLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQ--AKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIE 87 (166)
Q Consensus 13 ~~~~~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD--~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~ 87 (166)
|-+.+.+|-.+|++|| |+.. .|+-+.|-.|++. ..++- .+-.+..||-+|..+-. ..|+|++|...+.
T Consensus 3 LE~ai~~lI~~FhkYa--G~~~----tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 3 LEHSMEKMMLTFHKFA--GEKN----YLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHHHHc--CCCC----cCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3456778889999999 5432 5888888888853 23453 44467789999988765 4899999998887
Q ss_pred HHHH
Q psy12238 88 SLAK 91 (166)
Q Consensus 88 ~lA~ 91 (166)
.|+.
T Consensus 76 ~l~~ 79 (91)
T cd05024 76 GLLI 79 (91)
T ss_pred HHHH
Confidence 7754
No 15
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=89.59 E-value=0.62 Score=30.00 Aligned_cols=61 Identities=8% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHHHHHHHh
Q psy12238 21 SSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIESLAKH 92 (166)
Q Consensus 21 ~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~~lA~k 92 (166)
+++|..|.. ..+ ..|+...+.++++..|+ +..+++-+|..+.. ..|+|++|...+..+..+
T Consensus 2 ~~~F~~~D~----~~~-G~i~~~el~~~l~~~g~------~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 2 DQIFRSLDP----DGD-GLISGDEARPFLGKSGL------PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred hHHHHHhCC----CCC-CcCcHHHHHHHHHHcCC------CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 456777643 222 23888899999988654 55667778877764 489999999988766543
No 16
>PTZ00183 centrin; Provisional
Probab=89.54 E-value=0.48 Score=35.27 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHHH
Q psy12238 19 GFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIE 87 (166)
Q Consensus 19 ~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~ 87 (166)
.++.+|+.|-.-+++. |+...|..+|+.+| ..++..++.-+|..+-. -.|+|++|..++.
T Consensus 91 ~l~~~F~~~D~~~~G~-----i~~~e~~~~l~~~~----~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 91 EILKAFRLFDDDKTGK-----ISLKNLKRVAKELG----ETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHhCCCCCCc-----CcHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 5667777664322222 67777777777664 34667777777777653 2578888877664
No 17
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=88.46 E-value=0.97 Score=36.65 Aligned_cols=88 Identities=9% Similarity=0.179 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc--CccCHHHHH
Q psy12238 6 LVILAHFLCKYFLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS--LKIGLSDYQ 83 (166)
Q Consensus 6 ~~~~~~~~~~~~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~--k~I~f~qF~ 83 (166)
+..-.+|--..++.|.++|..|+.=+++. |+-.-+.+++|-+|.. .|..-+.=+|+.+-+ -.|+|++|+
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~-----I~~~el~~ilr~lg~~----~s~~ei~~l~~~~d~~~~~idf~~Fl 78 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGL-----IDRNELGKILRSLGFN----PSEAEINKLFEEIDAGNETVDFPEFL 78 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCC-----CcHHHHHHHHHHcCCC----CcHHHHHHHHHhccCCCCccCHHHHH
Confidence 34455677788999999999998766555 9999999999976654 566666666777664 589999999
Q ss_pred HHHHHHHHhcCCChHHHHHHH
Q psy12238 84 KFIESLAKHKSVPEYDVWASK 104 (166)
Q Consensus 84 ~aL~~lA~kk~~~~~~ei~~k 104 (166)
.+|...-+.... .++|...
T Consensus 79 ~~ms~~~~~~~~--~Eel~~a 97 (160)
T COG5126 79 TVMSVKLKRGDK--EEELREA 97 (160)
T ss_pred HHHHHHhccCCc--HHHHHHH
Confidence 999877664443 3444443
No 18
>PTZ00184 calmodulin; Provisional
Probab=86.87 E-value=0.82 Score=33.35 Aligned_cols=59 Identities=15% Similarity=0.292 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHH
Q psy12238 19 GFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 19 ~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
.++.+|..|-.-|++. |+-..|.++|+..+ ..++..++.-+|..+-. ..|+|++|..++
T Consensus 85 ~~~~~F~~~D~~~~g~-----i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGF-----ISAAELRHVMTNLG----EKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhhCCCCCCe-----EeHHHHHHHHHHHC----CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 4566666664333222 77777888877753 34566667777766532 368888876655
No 19
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=85.04 E-value=0.59 Score=29.58 Aligned_cols=47 Identities=11% Similarity=0.290 Sum_probs=37.3
Q ss_pred cccchhHHHHhhhcCccCCCCCCccccceeeeecccC---ccCHHHHHHHHHH
Q psy12238 39 LLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSL---KIGLSDYQKFIES 88 (166)
Q Consensus 39 eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~k---~I~f~qF~~aL~~ 88 (166)
.|+-..|-.+|+-.|+-+ ++..+++.+|+.+-.. .|+|++|..++..
T Consensus 4 ~i~~~~~~~~l~~~g~~~---~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 4 KITREEFRRALSKLGIKD---LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEEHHHHHHHHHHTTSSS---SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred EECHHHHHHHHHHhCCCC---CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 478888888885444332 8999999999998763 8999999998864
No 20
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=83.89 E-value=1.3 Score=26.56 Aligned_cols=58 Identities=14% Similarity=0.328 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHH
Q psy12238 20 FSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 20 L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
+..+|..+.. ..+ ..|+-..|..+++..+ ...+...+.-+|.++.. ..|+|++|..++
T Consensus 2 ~~~~f~~~d~----~~~-g~l~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDK----DGD-GTISADELKAALKSLG----EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCC----CCC-CcCcHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4566776642 211 2488899999998865 33456666778888753 489999998765
No 21
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=83.58 E-value=0.82 Score=31.70 Aligned_cols=60 Identities=13% Similarity=0.344 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc-------CccCHHHHHHHH
Q psy12238 19 GFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS-------LKIGLSDYQKFI 86 (166)
Q Consensus 19 ~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~-------k~I~f~qF~~aL 86 (166)
+++.+|..|+. + +..|+...|.+.+++..=- ..+|..++.-++.++.+ ..++++.|..+|
T Consensus 1 ei~~if~~ys~-~-----~~~mt~~~f~~FL~~eQ~~--~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-D-----KEYMTAEEFRRFLREEQGE--PRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-T-----SSSEEHHHHHHHHHHTSS---TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-C-----CCcCCHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 47889999964 2 4569999999999877644 24688888888998753 378999998888
No 22
>PLN02964 phosphatidylserine decarboxylase
Probab=83.36 E-value=2.1 Score=41.57 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccc---cceeeeeccc---CccCHHHH
Q psy12238 9 LAHFLCKYFLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTD---TGIHFKKFKS---LKIGLSDY 82 (166)
Q Consensus 9 ~~~~~~~~~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TD---vDiiF~KvK~---k~I~f~qF 82 (166)
|.||+++=++++.++|..|.. ..+|. ....+++.+|.++ .|..+ ++-+|..+-. -.|+|++|
T Consensus 134 ~t~f~~kqi~elkeaF~lfD~----dgdG~-----iLg~ilrslG~~~---pte~e~~fi~~mf~~~D~DgdG~IdfdEF 201 (644)
T PLN02964 134 LFDFVTQEPESACESFDLLDP----SSSNK-----VVGSIFVSCSIED---PVETERSFARRILAIVDYDEDGQLSFSEF 201 (644)
T ss_pred HhhccHHHHHHHHHHHHHHCC----CCCCc-----CHHHHHHHhCCCC---CCHHHHHHHHHHHHHhCCCCCCeEcHHHH
Confidence 479999999999999999964 33333 2777788888643 34444 5677776643 37999999
Q ss_pred HHHHHHHH
Q psy12238 83 QKFIESLA 90 (166)
Q Consensus 83 ~~aL~~lA 90 (166)
+..|..+.
T Consensus 202 l~lL~~lg 209 (644)
T PLN02964 202 SDLIKAFG 209 (644)
T ss_pred HHHHHHhc
Confidence 99888664
No 23
>PTZ00183 centrin; Provisional
Probab=81.65 E-value=2.5 Score=31.34 Aligned_cols=64 Identities=11% Similarity=0.174 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHHHHH
Q psy12238 17 FLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIESL 89 (166)
Q Consensus 17 ~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~~l 89 (166)
...++.+|..|-. ..+| .|+...|..+++..|. .++...+.-+|..+-. ..|+|++|..++...
T Consensus 16 ~~~~~~~F~~~D~----~~~G-~i~~~e~~~~l~~~g~----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 16 KKEIREAFDLFDT----DGSG-TIDPKELKVAMRSLGF----EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHHHHhCC----CCCC-cccHHHHHHHHHHhCC----CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 4568888888743 3323 5999999999997754 3445567777776543 379999999887654
No 24
>KOG0037|consensus
Probab=75.93 E-value=5.6 Score=34.03 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHHHH
Q psy12238 12 FLCKYFLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIES 88 (166)
Q Consensus 12 ~~~~~~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~~ 88 (166)
-|-+++..-+++|+.|-. -.+| .|+...+-.-+...|- .|.+.=.+++++|+-. .+|.|++|.+++..
T Consensus 118 ~Lw~~i~~Wr~vF~~~D~----D~SG-~I~~sEL~~Al~~~Gy----~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 118 ALWKYINQWRNVFRTYDR----DRSG-TIDSSELRQALTQLGY----RLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHHHHHHHHhccc----CCCC-cccHHHHHHHHHHcCc----CCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 377899999999999943 3333 3888888888887764 4778889999999984 48999999988865
Q ss_pred H
Q psy12238 89 L 89 (166)
Q Consensus 89 l 89 (166)
|
T Consensus 189 L 189 (221)
T KOG0037|consen 189 L 189 (221)
T ss_pred H
Confidence 4
No 25
>KOG0027|consensus
Probab=75.56 E-value=4.5 Score=31.00 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeecccC---ccCHHHHHHHHHHHHH
Q psy12238 17 FLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSL---KIGLSDYQKFIESLAK 91 (166)
Q Consensus 17 ~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~k---~I~f~qF~~aL~~lA~ 91 (166)
..+|.++|..|-.-|++. |+...+...++-.|.- .|...+.-++..+... .|+|++|+..+...-.
T Consensus 7 ~~el~~~F~~fD~d~~G~-----i~~~el~~~lr~lg~~----~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGK-----ISVEELGAVLRSLGQN----PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHCCCCCCc-----ccHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 567899999998877755 7888888888887665 6888888889888863 8999999888875543
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=74.73 E-value=1 Score=29.39 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHH
Q psy12238 20 FSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKF 85 (166)
Q Consensus 20 L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~a 85 (166)
|+++|+.|=. ..+| .++-..|.++++..+.--........++-+|..+-. ..|+|++|+.+
T Consensus 2 l~~~F~~~D~----d~~G-~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDK----DGDG-YISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHST----TSSS-EEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcC----CccC-CCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 6788998843 3333 388999999999887642222334456666776654 38999999876
No 27
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=63.93 E-value=11 Score=26.35 Aligned_cols=26 Identities=8% Similarity=0.221 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhh
Q psy12238 80 SDYQKFIESLAKHKSVPEYDVWASKNS 106 (166)
Q Consensus 80 ~qF~~aL~~lA~kk~~~~~~ei~~kl~ 106 (166)
+.|-++|++||+..++ ++.+++..|-
T Consensus 20 ~~FW~~L~eiA~~~g~-s~~~li~~id 45 (67)
T PF13467_consen 20 PAFWDALEEIAAREGL-SLNALIAEID 45 (67)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3589999999999999 8899888874
No 28
>PTZ00184 calmodulin; Provisional
Probab=57.22 E-value=24 Score=25.45 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHHHHH
Q psy12238 18 LGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIESL 89 (166)
Q Consensus 18 ~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~~l 89 (166)
..+...|..| |...+| .++-..|..++..-+ ...+..++.-+|..+-. ..|+|++|..+|...
T Consensus 11 ~~~~~~F~~~----D~~~~G-~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 11 AEFKEAFSLF----DKDGDG-TITTKELGTVMRSLG----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHH----cCCCCC-cCCHHHHHHHHHHhC----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 4566777766 344344 499999999997654 33445677777877653 379999999888754
No 29
>KOG0027|consensus
Probab=48.85 E-value=25 Score=26.87 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHH
Q psy12238 18 LGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 18 ~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
.+|.++|+.|-.=|++. |+-..+.++++..| .++|...++-.+..+-. -.|+|++|.+.+
T Consensus 85 ~el~eaF~~fD~d~~G~-----Is~~el~~~l~~lg----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGF-----ISASELKKVLTSLG----EKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHccCCCCc-----CcHHHHHHHHHHhC----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 38999999997666555 78888888888764 45677777777777664 378998887655
No 30
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=48.41 E-value=31 Score=21.53 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHhhh
Q psy12238 79 LSDYQKFIESLAKHKSVPEYDVWASKNSE 107 (166)
Q Consensus 79 f~qF~~aL~~lA~kk~~~~~~ei~~kl~~ 107 (166)
|++|++.|.+..+..- +..++++++..
T Consensus 4 Y~~FL~il~~y~~~~~--~~~~v~~~v~~ 30 (47)
T PF02671_consen 4 YNEFLKILNDYKKGRI--SRSEVIEEVSE 30 (47)
T ss_dssp HHHHHHHHHHHHCTCS--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHH
Confidence 8899999999888444 56777777653
No 31
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=45.06 E-value=33 Score=19.37 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCCCCCccccchhHHHHhh-hcC
Q psy12238 19 GFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMK-QAK 53 (166)
Q Consensus 19 ~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~K-D~~ 53 (166)
+|+++|+.|-.=+++ .|+-..|..+++ ..|
T Consensus 1 ~l~~~F~~~D~d~dG-----~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDG-----FIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSS-----EEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCC-----cCcHHHHHHHHHHhcC
Confidence 478899999543333 499999999988 444
No 32
>KOG0751|consensus
Probab=42.10 E-value=56 Score=31.73 Aligned_cols=80 Identities=14% Similarity=0.328 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCC--CCCCccccceeeeecccCccCHHHHHHHH
Q psy12238 9 LAHFLCKYFLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDG--KKVTTTDTGIHFKKFKSLKIGLSDYQKFI 86 (166)
Q Consensus 9 ~~~~~~~~~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDg--KkvT~TDvDiiF~KvK~k~I~f~qF~~aL 86 (166)
+--.||---+-.+.+|+-|-+-|+. +.+=..|.-.+.+..|..- -+....-+-+.|-..+.|-+||.+|.+.|
T Consensus 99 fe~~lC~pDal~~~aFqlFDr~~~~-----~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~l 173 (694)
T KOG0751|consen 99 FESVLCAPDALFEVAFQLFDRLGNG-----EVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFL 173 (694)
T ss_pred HHhhccCchHHHHHHHHHhcccCCC-----ceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHH
Confidence 3445666555678899999765543 3788899999999888742 22444556667777777899999999999
Q ss_pred HHHHHhc
Q psy12238 87 ESLAKHK 93 (166)
Q Consensus 87 ~~lA~kk 93 (166)
.++-.+.
T Consensus 174 h~~~~E~ 180 (694)
T KOG0751|consen 174 HEFQLEH 180 (694)
T ss_pred HHHHHHH
Confidence 9885554
No 33
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=37.63 E-value=1e+02 Score=19.52 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhh
Q psy12238 14 CKYFLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQ 51 (166)
Q Consensus 14 ~~~~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD 51 (166)
-+-+..+-.+|++||.- ..+...|+-+.|-+|+++
T Consensus 2 E~ai~~iI~vFhkYa~~---~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 2 EKAIETIIDVFHKYAGK---EGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHTS---SSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCCCeEcHHHHHHHHHH
Confidence 34566788999999842 122346888888887764
No 34
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=32.52 E-value=71 Score=23.11 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHhhh
Q psy12238 81 DYQKFIESLAKHKSVPEYDVWASKNSE 107 (166)
Q Consensus 81 qF~~aL~~lA~kk~~~~~~ei~~kl~~ 107 (166)
+..+.|.++|+..|+ +..|++++|+.
T Consensus 51 ~~K~~L~~lc~~~Gl-TQae~IE~LI~ 76 (84)
T PF10723_consen 51 ELKERLEELCKEQGL-TQAEMIERLIK 76 (84)
T ss_dssp HHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 367899999999999 88888888764
No 35
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=30.00 E-value=68 Score=26.52 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccC--CCCCCccccceeeeecc-----cC---ccCHHHHH
Q psy12238 14 CKYFLGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVID--GKKVTTTDTGIHFKKFK-----SL---KIGLSDYQ 83 (166)
Q Consensus 14 ~~~~~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liD--gKkvT~TDvDiiF~KvK-----~k---~I~f~qF~ 83 (166)
-|.++++.++-..|+..+... ..+.|++|-.|+.|-.-.- -+......+|-+=.-+- .+ ...|.+|+
T Consensus 101 MkAlD~i~~~e~~l~~~~~~~---~r~~G~~~R~~L~~Lr~~~~p~k~~~~~Li~~l~D~Ye~AR~g~~~FGe~Ey~ky~ 177 (186)
T PF07406_consen 101 MKALDAIRELEIPLHKLDRSL---ARLPGENFRSYLLDLRNSSTPLKGSRSALIDQLLDGYEHARHGPGPFGEAEYLKYQ 177 (186)
T ss_pred HHHHHHHHHHhhHHHhhCCCc---cccccccHHHHHHHHHhccCCccCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 367788888888888888775 3578888888875533331 12233444444333222 22 57888888
Q ss_pred HHHHHHHH
Q psy12238 84 KFIESLAK 91 (166)
Q Consensus 84 ~aL~~lA~ 91 (166)
++|.+|+.
T Consensus 178 ~~l~eL~~ 185 (186)
T PF07406_consen 178 ELLTELAD 185 (186)
T ss_pred HHHHHHhc
Confidence 88888864
No 36
>KOG4426|consensus
Probab=27.76 E-value=63 Score=31.08 Aligned_cols=21 Identities=29% Similarity=0.725 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12238 8 ILAHFLCKYFLGFSSNFKLFS 28 (166)
Q Consensus 8 ~~~~~~~~~~~~L~~~F~~Fa 28 (166)
++.|+||+|+=+|...|..|-
T Consensus 589 L~lh~lC~y~y~l~t~Ft~FY 609 (656)
T KOG4426|consen 589 LFLHVLCDYLYELATLFTEFY 609 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999995
No 37
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=26.77 E-value=71 Score=25.88 Aligned_cols=60 Identities=22% Similarity=0.517 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHH
Q psy12238 18 LGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFI 86 (166)
Q Consensus 18 ~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL 86 (166)
.+|..+|+.|-. .. +| -|......-+++ -+ |-+++...|+-++.-+-. -.|+|++|.+..
T Consensus 92 Eel~~aF~~fD~---d~-dG-~Is~~eL~~vl~---~l-ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 92 EELREAFKLFDK---DH-DG-YISIGELRRVLK---SL-GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHHHhCC---CC-Cc-eecHHHHHHHHH---hh-cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 345666666643 32 22 277788888888 34 377889999998888773 389999998765
No 38
>COG3753 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.50 E-value=57 Score=26.23 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=28.3
Q ss_pred ccCHHHHH-----HHHHHHHHhcCCChHHHHHHHhhhhccccccccccC
Q psy12238 76 KIGLSDYQ-----KFIESLAKHKSVPEYDVWASKNSEAQIQNTISRLTD 119 (166)
Q Consensus 76 ~I~f~qF~-----~aL~~lA~kk~~~~~~ei~~kl~~~t~~~~v~rltD 119 (166)
-|+=+|-. .+|++||.+-++ +.+|+.++|++ .=|+.|+.||-
T Consensus 78 pIs~~ql~~aiG~~~l~~la~~~Gl-d~~El~~~Ls~-~LP~~VdkLTP 124 (143)
T COG3753 78 PISAEQLESAIGTDTLSQLAQKTGL-DEQELLKQLSE-QLPGIVDKLTP 124 (143)
T ss_pred CCCHHHHHHHhchhHHHHHHHHhCC-CHHHHHHHHHH-HhHHHHHhcCC
Confidence 45555544 357899999999 67888888763 33555666553
No 39
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=25.87 E-value=94 Score=20.71 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCChHHHHHHHhh
Q psy12238 85 FIESLAKHKSVPEYDVWASKNS 106 (166)
Q Consensus 85 aL~~lA~kk~~~~~~ei~~kl~ 106 (166)
+++.+|++.++ +.+|+.+.+.
T Consensus 7 ~Ie~~A~~~~~-s~~ea~~~~~ 27 (62)
T PF12668_consen 7 CIEEFAKKLNI-SGEEAYNYFK 27 (62)
T ss_pred HHHHHHHHHCc-CHHHHHHHHH
Confidence 78999999999 7788887764
No 40
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=25.66 E-value=1.2e+02 Score=20.75 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHhh
Q psy12238 78 GLSDYQKFIESLAKHKSVPEYDVWASKNS 106 (166)
Q Consensus 78 ~f~qF~~aL~~lA~kk~~~~~~ei~~kl~ 106 (166)
.|..|.+.+.|+-..+++.+.+++.+.|.
T Consensus 4 P~~DFr~SM~EMI~~~~i~~~~~LeeLL~ 32 (59)
T PF04844_consen 4 PYEDFRESMVEMIEENGIRDWDDLEELLA 32 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 58899999999988888766677777664
No 41
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=25.13 E-value=82 Score=22.52 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12238 10 AHFLCKYFLGFSSNFKLFS 28 (166)
Q Consensus 10 ~~~~~~~~~~L~~~F~~Fa 28 (166)
.|.+|.|+-+|...|.+|=
T Consensus 58 p~~l~~yL~~La~~f~~fy 76 (119)
T PF05746_consen 58 PHKLCDYLYELAQAFNSFY 76 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999984
No 42
>KOG0044|consensus
Probab=24.26 E-value=1e+02 Score=25.67 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc---CccCHHHHHHHHHHHHHh
Q psy12238 19 GFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS---LKIGLSDYQKFIESLAKH 92 (166)
Q Consensus 19 ~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~---k~I~f~qF~~aL~~lA~k 92 (166)
+++..++.| ..-..+| .|++..|-++.+.-.- +|- .+.=++.+|+-+.. ..|+|.+|+.+|..+..-
T Consensus 27 ei~~~Yr~F---k~~cP~G-~~~~~~F~~i~~~~fp-~gd--~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG 96 (193)
T KOG0044|consen 27 EIQQWYRGF---KNECPSG-RLTLEEFREIYASFFP-DGD--ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG 96 (193)
T ss_pred HHHHHHHHh---cccCCCC-ccCHHHHHHHHHHHCC-CCC--HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC
Confidence 455555555 3444444 4999999999998775 221 23335566665554 589999999999877543
No 43
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=23.34 E-value=56 Score=20.76 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12238 5 MLVILAHFLCKYFLGFSSNF 24 (166)
Q Consensus 5 ~~~~~~~~~~~~~~~L~~~F 24 (166)
|+.|-+-|+.+|++++++=-
T Consensus 1 m~~i~~~fieryfddiqkwi 20 (40)
T PF13124_consen 1 MLYIYTAFIERYFDDIQKWI 20 (40)
T ss_pred CceehHHHHHHHHHHHHHHH
Confidence 67788999999999987643
No 44
>PF07335 Glyco_hydro_75: Fungal chitosanase of glycosyl hydrolase group 75; InterPro: IPR009939 This family consists of chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase [].
Probab=22.18 E-value=1.7e+02 Score=23.50 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=43.3
Q ss_pred HHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeecccCc---------cCHHHHHHHHHHHHH
Q psy12238 27 FSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLK---------IGLSDYQKFIESLAK 91 (166)
Q Consensus 27 Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~k~---------I~f~qF~~aL~~lA~ 91 (166)
|+.+||+. +..|.|.-+..|.+-||.=-..+---.+-|+.|-=+.... -+|++|.+.|+.+..
T Consensus 79 y~I~GDtg--~~~~iGEaSiala~~~g~~~~g~~g~~~~dVlYi~F~gs~av~P~~~~a~~~~~~~~sl~~~Gd 150 (156)
T PF07335_consen 79 YAIVGDTG--PDPKIGEASIALARACGINPNGNNGHDDSDVLYIVFPGSDAVSPGPDGAKSYETFEKSLKALGD 150 (156)
T ss_pred EEEEeccC--CCCcccHHHHHHHHHhCCCCCCCCCcCCCCEEEEEECCCcccCCCchhHHHHHHHHHHHHHHHH
Confidence 56788887 3589999999999999664212233566677776666531 378888888865543
No 45
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=21.99 E-value=61 Score=27.41 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=31.6
Q ss_pred ccchhHHHHhhhcCccCCCCCCccccceeeeecccC
Q psy12238 40 LTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSL 75 (166)
Q Consensus 40 M~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~k 75 (166)
||-.+|.++++|++|+-.|..+.=+-|+|..=+.+.
T Consensus 1 ~Dd~~F~~~l~ds~VL~~Kd~~~WnW~~I~~ll~gp 36 (226)
T PF14666_consen 1 MDDATFRQMLRDSKVLTTKDFTKWNWDLILELLEGP 36 (226)
T ss_pred CCHHHHHHHHHhcCccccCCCCccCHHHHHHHHhCC
Confidence 678899999999999988888888888888888764
No 46
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=21.89 E-value=1.6e+02 Score=17.17 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhh
Q psy12238 82 YQKFIESLAKHKSVPEYDVWASKNS 106 (166)
Q Consensus 82 F~~aL~~lA~kk~~~~~~ei~~kl~ 106 (166)
=.+.|+++|++.+. +..+++..+.
T Consensus 10 ~~~~l~~~a~~~g~-s~s~~ir~ai 33 (39)
T PF01402_consen 10 LYERLDELAKELGR-SRSELIREAI 33 (39)
T ss_dssp HHHHHHHHHHHHTS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc-CHHHHHHHHH
Confidence 35689999999998 7777665543
No 47
>KOG0034|consensus
Probab=20.64 E-value=1.4e+02 Score=24.59 Aligned_cols=66 Identities=6% Similarity=0.047 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeecccCccCHHHHHHHHHHH
Q psy12238 19 GFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIGLSDYQKFIESL 89 (166)
Q Consensus 19 ~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~k~I~f~qF~~aL~~l 89 (166)
+++.+...|+++.... ....|+-.+|.-+. .+.=.++-..=+|+.|.+-.+-.|+|++|...|...
T Consensus 31 EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~----~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f 96 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNN-GDGYLTKEEFLSIP----ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVF 96 (187)
T ss_pred HHHHHHHHHHHhcccc-ccCccCHHHHHHHH----HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhh
Confidence 4555555555555443 23468888888877 111122323334444443333348888888877644
No 48
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=20.37 E-value=34 Score=28.15 Aligned_cols=12 Identities=67% Similarity=1.257 Sum_probs=7.9
Q ss_pred ccccCCCCCCC-C
Q psy12238 128 KLRFDEAGKGK-G 139 (166)
Q Consensus 128 Kerfd~~g~gk-g 139 (166)
|=||||||+.| |
T Consensus 89 KVRFDEsGrdk~G 101 (166)
T PF10429_consen 89 KVRFDESGRDKLG 101 (166)
T ss_dssp EEEEB-SSB-TTS
T ss_pred EEEecCCCCCCCC
Confidence 56899999886 5
No 49
>PLN02222 phosphoinositide phospholipase C 2
Probab=20.21 E-value=1.1e+02 Score=29.55 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccchhHHHHhhhcCccCCCCCCccccceeeeeccc----CccCHHHHHHHHH
Q psy12238 18 LGFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKS----LKIGLSDYQKFIE 87 (166)
Q Consensus 18 ~~L~~~F~~Fa~fG~~~~~g~eM~~k~F~Kl~KD~~liDgKkvT~TDvDiiF~KvK~----k~I~f~qF~~aL~ 87 (166)
.++..+|.+|+. ...|+-.+|.+.+.+..=.+ ..+..++.-||.+++. +.++++.|..+|-
T Consensus 25 ~ei~~if~~~~~-------~~~mt~~~l~~FL~~~Q~~~--~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 25 REIKTIFEKYSE-------NGVMTVDHLHRFLIDVQKQD--KATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHHhcC-------CCCcCHHHHHHHHHHhcCCc--cCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 478999999873 13699999999999988653 3566677777887543 3699999999884
Done!