RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12238
         (166 letters)



>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 138

 Score = 83.0 bits (205), Expect = 1e-21
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)

Query: 19  GFSSNFKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIG 78
           G   +F+ F+  GD K+ G+ +      K  K  KV DGK VT TD  I F K K+    
Sbjct: 9   GLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKSAR 68

Query: 79  LSDYQKFIESLA-----KHKSVPEYDVWASKNSE-------------AQIQNTISRLTDP 120
           + +Y++F ++L      + K   + + + +                 A+    + RLTD 
Sbjct: 69  VINYEEFKKALEELATKRFKGKSKEEAFDAICQLIAGKEPANIGVTKAKTGGAVDRLTDT 128

Query: 121 SRYTGSHKLR 130
           S+YTGSHK R
Sbjct: 129 SKYTGSHKER 138


>d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3
          {Caenorhabditis elegans [TaxId: 6239]}
          Length = 103

 Score = 62.5 bits (152), Expect = 4e-14
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSL--KIGLSD 81
          +  F+KFG   +    +T    DKW+K A V+D K +T T TGI F K      K    +
Sbjct: 11 WDAFTKFG--AATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDE 68

Query: 82 YQKFIESLAKHK 93
           +K +  +A+ +
Sbjct: 69 TKKVLAFVAEDR 80


>d2hxja1 a.136.1.1 (A:3-118) Hypothetical protein NMB1681 {Neisseria
           meningitidis [TaxId: 487]}
          Length = 116

 Score = 25.2 bits (55), Expect = 3.0
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 18/75 (24%)

Query: 69  FKKFKSLKIGLSDYQKFIESLAKHKSVPEYDVWASKNSEAQIQNTISRLTDPSRYTGS-- 126
           FK+FK L +G+   Q  I +L ++               A I   ++      RY  +  
Sbjct: 36  FKRFKPLALGI--DQDLIAALPQY-------------DAALIARVLANHCRRPRYLKALA 80

Query: 127 -HKLRFDEAGKGKGL 140
               RFD   + KG 
Sbjct: 81  RGGKRFDLNNRFKGE 95


>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide),
           N-terminal domain {Bacillus thuringiensis, CRYIA (A)
           [TaxId: 1428]}
          Length = 223

 Score = 24.8 bits (54), Expect = 4.9
 Identities = 9/82 (10%), Positives = 26/82 (31%), Gaps = 3/82 (3%)

Query: 43  SQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIGLSDYQKFIESLAKHKSVPEY--DV 100
           SQ D ++ Q + +  +++          + + L      Y +         + P    ++
Sbjct: 39  SQWDAFLVQIEQLINQRIEEFARNQAISRLEGLSNLYQIYAESFREWEADPTNPALREEM 98

Query: 101 WAS-KNSEAQIQNTISRLTDPS 121
                +  + +   I  L   +
Sbjct: 99  RIQFNDMNSALTTAIPLLAVQN 120


>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 61

 Score = 23.1 bits (49), Expect = 6.5
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 24 FKLFSKFGDTKSDGKLLTLSQSDKWMKQAKVIDGKKVTTTDTGIHFKKFKSLKIGLSDYQ 83
          F++F    D +S GK+         ++      G+K+T  +     K  +    G  DY+
Sbjct: 7  FQVF----DKESTGKVSV-----GDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYK 57

Query: 84 KFIE 87
          KFIE
Sbjct: 58 KFIE 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,300
Number of extensions: 24669
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 9
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)