Query psy12239
Match_columns 785
No_of_seqs 154 out of 171
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 22:20:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3680|consensus 100.0 2E-180 5E-185 1506.6 45.1 779 4-782 11-830 (830)
2 PF11882 DUF3402: Domain of un 100.0 7E-110 2E-114 920.6 24.3 385 366-764 7-409 (409)
3 PF07923 N1221: N1221-like pro 100.0 1.6E-64 3.5E-69 539.7 25.0 272 30-305 1-290 (293)
4 PF11882 DUF3402: Domain of un 96.5 0.0012 2.5E-08 75.1 1.7 31 406-436 1-31 (409)
5 KOG1924|consensus 68.5 7.7 0.00017 47.5 5.4 18 106-123 209-226 (1102)
6 cd03572 ENTH_epsin_related ENT 62.0 18 0.00038 35.1 5.6 53 85-143 34-86 (122)
7 KOG0166|consensus 44.2 2.2E+02 0.0048 34.0 11.8 93 43-155 68-162 (514)
8 KOG1924|consensus 34.2 41 0.00088 41.6 3.9 17 618-634 863-879 (1102)
9 PF02985 HEAT: HEAT repeat; I 32.9 82 0.0018 22.6 4.0 29 91-119 2-30 (31)
10 PF00514 Arm: Armadillo/beta-c 27.4 46 0.001 25.2 2.0 20 136-155 3-22 (41)
11 cd00020 ARM Armadillo/beta-cat 22.7 2.8E+02 0.0062 24.3 6.5 53 90-156 8-60 (120)
12 KOG0166|consensus 22.3 5.1E+02 0.011 31.1 10.0 77 91-198 366-442 (514)
13 cd00020 ARM Armadillo/beta-cat 20.6 2.9E+02 0.0062 24.3 6.1 54 89-156 49-102 (120)
No 1
>KOG3680|consensus
Probab=100.00 E-value=2.1e-180 Score=1506.62 Aligned_cols=779 Identities=53% Similarity=0.848 Sum_probs=726.2
Q ss_pred CCCCCCCCcchhhhcCCCCCCCCCCCCCccceEeCCCCChhHHHhhhcccCchhhhhhhHHHHHHHHHhccCCCccccCC
Q psy12239 4 GNGSKGVPKFREFYRKPRLDSEDGRDSPEVRYIYDDTDYHQNEISEIYSYTEQPEFQLNVKNFEDQMEAYGLIPCWQKLT 83 (785)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~~F~Y~D~d~~~~Ei~EwysY~e~~~~~ln~~~fe~~~~~~~~~~~W~~~~ 83 (785)
+.+...+.|++|....+.+..++....|+++|.|+|.+-...|++|.|+|++..+|..|+++||++++++..+..|.+.+
T Consensus 11 ~s~~~~~~k~~d~~~s~~~~~e~~~s~~dl~~~~~d~~~~~~~~~e~~~~~~~~~f~~~~~~~e~d~r~~~~~q~wse~~ 90 (830)
T KOG3680|consen 11 NSSFQRLLKYKDSFTSDKEPQEGSLSSPDLLFDLDDMLGGQLEMAELYFYTANREFSMNRRCFEEDFRHIDLPQNWSELS 90 (830)
T ss_pred ccchhcchhhcccccccCccccccCCChHHHhhhhhhhhhhhhhcchhhhhhhhhHHHhhHHhhccceeeecCcchhhhh
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhhhhccCCC
Q psy12239 84 PVEKNSVIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNLEIDSSSN 163 (785)
Q Consensus 84 ~~~r~~~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ei~~~~~ 163 (785)
.+++|.+|+++++++|+++++.|++|+|+|+|+|||+||+|++.+++.+|+++||++|+|.|+|.+++++|+++|+++.+
T Consensus 91 ~~q~r~~i~~l~d~lE~~e~e~R~ksar~ILylaqG~~~e~~s~~e~~~~~r~N~~ll~e~gvf~sl~~LL~~ei~ss~~ 170 (830)
T KOG3680|consen 91 VNQKRNNIMELLDRLESAERENRLKSARAILYLAQGTFGECDSEEEVRSSARENVFLLYELGVFYSLEDLLNEEIDSSDA 170 (830)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhccchhccCcchhhhhhhhhhhHHHHhcCcHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ----ccchhccccCccchHHHHHHHHHHHhhhhhhccCCC--CcchhhhHHHHHHHhcCC-CCCchHHHHHHHHHHhhcC
Q psy12239 164 ----TTTVRKLAVSLHDSTDLRIILSVLCTIVEVVRHLEP--NVRHSSVFEMLKNEISNP-IGDELLAVKLFKMVTRFCS 236 (785)
Q Consensus 164 ----~~~~~~~~~sl~~s~el~~~LtilY~~Ve~~r~~~~--~~~~~~~r~~f~~eL~~p-~~~~~L~~~L~~~v~~lr~ 236 (785)
.++.++++++++|+++++++|++||+|+++++...+ +..|.+.|.+|+.|+..| ++.++|+..+++|+.+||.
T Consensus 171 ~~~~~~~~rk~~~s~~D~s~~rvlLallY~~m~~~~~e~e~~~~~~r~~~~sf~~ev~~~l~~~e~~ai~l~~m~~~f~~ 250 (830)
T KOG3680|consen 171 CSPGKSAVRKPNVSFADSSDLRVLLALLYIMMETFLDENEEDTKIWRENRLSFRPEVQEPLHNGEPLAISLFDMVTKFCS 250 (830)
T ss_pred cCcchhhhcccccccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHhhhhhccccccCCeeEEEeeccchhhhc
Confidence 367799999999999999999999999999987653 788999999999999888 8889999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCCCCCchhHHHhhcccC--CCCCCChhhhHHHhhh-ccC
Q psy12239 237 GATPHFPMKKVLILLWKVILVSLGGMKDLQELKKEKRKQNGLKVLDEDTIEIAKTMRP--SSPPASAVDIIEAQNQ-KRN 313 (785)
Q Consensus 237 ~~a~~~P~kkvlLLlWK~lL~~fGG~~~L~~~K~~~r~~~gl~~~~ed~i~i~~~~~a--~sPp~~~~dL~~~~~~-~~~ 313 (785)
|.++|||||||+||+||+.++++||+++|++.|+.+|...||++..+|+|+|+.+|+| .+||.++.++.+.+-+ .+.
T Consensus 251 g~aphFp~KKillLiwKv~i~~lGg~e~Lq~~K~e~R~~lgL~~~~ed~itv~~~~~af~~~~~s~~~~l~~~~yp~p~~ 330 (830)
T KOG3680|consen 251 GTAPHFPIKKILLLIWKVCILTLGGFEELQKLKAEKRWNLGLPPIIEDTITVAKSMRAFYASPPSSASNLAESQYPSPRK 330 (830)
T ss_pred CccccccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhCChHHHHHHHhhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999877632 223
Q ss_pred CCccccccccCCCCCCCCCC-----CC--------C------CCCCCCCCCC-------ccccCCCCCCC-CCCccccCC
Q psy12239 314 SRPLKRLALMKQSSLDEPAG-----AE--------F------EPEEDYEDPQ-------VMEVTMPRPPS-PTPIVVEKK 366 (785)
Q Consensus 314 ~~p~~~~p~~~~~~l~~~~~-----~~--------~------~~~~s~~~~~-------~~~~~~~p~~p-psp~v~~~k 366 (785)
++...+--.++|++.+.|.. .+ . ++..++.+.+ ++++||++.|| ..++|+.+|
T Consensus 331 R~~s~~~~~~~~d~~D~f~~~~~~ss~~~~~e~~s~s~g~~~~~~~s~~~e~~~~~q~~p~~~tP~~~~P~~~~~v~~~~ 410 (830)
T KOG3680|consen 331 RRGSLHQQAFKQDNTDEFNESDMPSSGLPKDENKSESLGQFLDGPRSLSGEPFNLEQIDPHIQTPALQPPSSPQPVTLPK 410 (830)
T ss_pred cchhHHHHhhhccccccccccccccCCCCCccCcccccccccCCCCCcccCccchhccCCCCCCCCCCCCCCCccccccC
Confidence 33111125677877776531 00 0 1122222222 23567766666 345689999
Q ss_pred CCCCCccchhHHHHHHHHHhhhhccccccC-CCCccccccCcchhHHHHHHHhccccChhhhhhhhhHhhhcCCCCCCcc
Q psy12239 367 VLPWSPKVRQKELDMFLEAIRMKFVGFALR-GDRDSLIGLPHPIHESVKVLKQHIYTSLSEVHIQKEEEINRSPMSLGEE 445 (785)
Q Consensus 367 ~~pw~~Kvr~~~~~~fl~~~r~~f~~~~~~-~~~~~~~~vP~sI~Ea~~il~~~~y~sls~~Ql~~E~e~~~~p~~~~e~ 445 (785)
|+||+||+|.+|+++|++.+|++|+||.+. +|.++++|||.||+||.++|+.|+|+|++++|+|.|++++++|++++++
T Consensus 411 ~lPw~~k~r~~die~fl~~~R~k~l~~~l~~~d~~t~~glP~p~hea~ktL~~~ly~sla~~Q~~~eeel~~~~~s~~e~ 490 (830)
T KOG3680|consen 411 GLPWASKVRQKDIEQFLESSRNKTLGYRLDLGDHETLVGLPRPIHEAFKTLKQHLYISLAEVQIKKEEELNRIPLSGGED 490 (830)
T ss_pred CCCCCcchhhhhHHHHHhhhhhhhhhccccCCCCcccccCCcchHHHHHHhhhhheeehhHHhhhhHHHHhhcccccchh
Confidence 999999999999999999999999999998 8999999999999999999999999999999999999999999999998
Q ss_pred ccCCCcHHHHHHhhCCCchhHHHHHHHHHHHhCCCCcccCCCcccccCCCCCCCChhhhhhhccchhHHHHHHHHHHHHH
Q psy12239 446 IIGSSPTEMLYQKMLPNLPQYMIALLKILLAAAPTSKAKTDSINILSDVLPEEMPMTILQSMKLGTDVNRHKEIIVKAIS 525 (785)
Q Consensus 446 ~i~~~~vE~fY~~~Lp~L~s~vivLLk~lla~~~~~~~~~~~~n~~~d~~p~~~~~~~~~~~~~~ld~~R~kEI~~KAvs 525 (785)
+++.+++|.+|+.+||+|++++++|+|++++++|+++++++++|+++|++|++|+.+..++++.++||+|||||++||+|
T Consensus 491 ~i~~~p~e~LY~~~l~nl~qym~allkim~~~~Pt~Kar~~s~NvlidvL~~~M~~s~~~s~kl~idInRhKEiivKSlS 570 (830)
T KOG3680|consen 491 EIEETPAETLYQGILPNLSQYMIALLKIMVAASPTSKARTESINVLIDVLPEEMESSAIQSMKLGIDINRHKEIIVKSLS 570 (830)
T ss_pred hhccchHHHHHHHhccCccHHHHHHHHHHHhcCcchhhhccccchhHHhccccchhhhhcccceeeeeccchhhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHhhcccchhhhccCCCCCCCCCCccccCCCCCCCcccccCCCCCC
Q psy12239 526 SILLLLLKHFKLNHVYQFEFMSQHLVFANCIPLVLKFFNQNISMYISAKSVIPILDFPACVIGDQPELTSESFEIGEGQT 605 (785)
Q Consensus 526 ~iLlLLLKwFK~sHilkFEylsqlL~dsN~~pliLK~fnq~i~~~v~~k~~~~~~~f~~c~~~~~p~~~~~~~~~~~~~~ 605 (785)
|||||||||||+|||||||||||+|+++||||+|||||||++.+||++||+++..+|+.|.+++.|.++.++++.+-...
T Consensus 571 ailLllLKhFKLnHIyqFE~l~q~lvy~N~ipliLkffnq~~~e~i~nkn~i~v~~~p~C~~~e~p~lt~dsve~p~~~~ 650 (830)
T KOG3680|consen 571 AILLLLLKHFKLNHIYQFEYLAQHLVYANCIPLILKFFNQNITEYITNKNEIPVLDYPECVISELPELTSDSVEAPGDSG 650 (830)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhcccccccccCCcccccCCccccccceeccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998743278
Q ss_pred CCcchhHHHHHHHHHHHHHHhcccccceeeeecccchHHHHhhhhccchhhhHHHHHHHhhhccCcchhhhhcccchhhH
Q psy12239 606 PHSWRNLVSCINLLRILNKLTKWKHSRIMMLVIFKSAPILKRTLKVRHAMMQLYVLKLLKMQTKYLGRQWRKSNMKTISA 685 (785)
Q Consensus 606 ~fs~Rn~fS~in~LrIlqKitK~K~~R~~~Lv~~Kss~ILKk~Lkv~~~~l~ly~LKl~K~qvPy~gRKWRqsNM~vIS~ 685 (785)
.|||||+|||||+||||+|+||||++|.+|||++||++||||+|||+|.+|||||||++|.||||+||||||+||++|||
T Consensus 651 ~~~wRNlfs~iNLLRiLnKl~K~K~~R~~mL~vfksapiLKr~lkv~~~~lqLYvLKllK~qt~yLGrqWrksNM~~iSa 730 (830)
T KOG3680|consen 651 QFSWRNLFSCINLLRILNKLTKWKNSRVKMLVVFKSAPILKRLLKVRHAMLQLYVLKLLKLQTPYLGRQWRKSNMKIISA 730 (830)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccccceeehhhhcchHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCccCCCCCCCCCccchHHHHHHHHHHHhhccccCCCCCCCCCccccc---ccccccccCcccCChhhHH
Q psy12239 686 IYAKVRHRLNDDWAYGNDLDARPWDFQAEECALRASVDRFNSRRYNSTCFDPDYESSD---NSIGSVLSHPIELTEDFKQ 762 (785)
Q Consensus 686 IYl~~R~~L~DdWl~g~Did~e~~d~~~~E~aLR~li~~yN~r~Y~~~~~~~~~~~~d---~~~~s~l~~~~~l~~~f~~ 762 (785)
||++|||+|+|||++|+|+++++||||+|||||||+|+|||.|||+..|.+.+....| +|.+||+|+.+.|++.|+.
T Consensus 731 IY~~vrhrL~DdWafg~Dis~r~~D~Q~eE~~LrA~Ie~fn~RrY~~~~~~~~~~~~~a~~~~~~svlG~~~~l~eyf~~ 810 (830)
T KOG3680|consen 731 IYLKVRHRLTDDWAFGNDISARPWDAQAEECALRALIEFFNSRRYDRAMESLYQFVIDAEMNCLQSVLGQRLSLPEYFHR 810 (830)
T ss_pred HHHHHhhhcccccccccCCCCCcchhhHHHHHHHHHHHHHHHhhcchhcccccccchHHHHhhHHhhhccccchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999888777776 9999999999999999999
Q ss_pred HHHHHHHhhhccCCCChhhh
Q psy12239 763 HYEIWLEREVFQLSINWDDL 782 (785)
Q Consensus 763 ~ye~wl~~ev~~~~~~w~~l 782 (785)
||+.|||+|||+.+|+||.|
T Consensus 811 ny~~wle~ev~n~e~ew~~l 830 (830)
T KOG3680|consen 811 NYESWLEREVFNKEIEWDAL 830 (830)
T ss_pred hHHHHHHHHHhcccchhhhC
Confidence 99999999999999999975
No 2
>PF11882 DUF3402: Domain of unknown function (DUF3402); InterPro: IPR021819 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 350 to 473 amino acids in length. This domain is found associated with PF07923 from PFAM.
Probab=100.00 E-value=7.1e-110 Score=920.60 Aligned_cols=385 Identities=48% Similarity=0.689 Sum_probs=349.7
Q ss_pred CCCCCCccchhHHHHHHHHHhhhhccccccC-CCCccccccCcchhHHHHHHHhccccChhhhhhhhhHhhhcCCCCCCc
Q psy12239 366 KVLPWSPKVRQKELDMFLEAIRMKFVGFALR-GDRDSLIGLPHPIHESVKVLKQHIYTSLSEVHIQKEEEINRSPMSLGE 444 (785)
Q Consensus 366 k~~pw~~Kvr~~~~~~fl~~~r~~f~~~~~~-~~~~~~~~vP~sI~Ea~~il~~~~y~sls~~Ql~~E~e~~~~p~~~~e 444 (785)
.|.+|++|||+++...|||.+|.+|++|.+| ++.++..+.|..+.|+++.+++|+|.+.++.|...|++.. ..+
T Consensus 7 Ag~lfs~~vr~t~a~~QLW~ERe~Fmk~erGw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~-----~~~ 81 (409)
T PF11882_consen 7 AGELFSSRVRMTRAMKQLWEEREKFMKYERGWDDDDSDDGDPLDISESVEELKKELYTSLAEDQIKKEEEIE-----SKS 81 (409)
T ss_pred hhhhhhhcccccHHHHHHHHHHHHHHhhhcCCCCCccccCCCcchHHHHHHHHHhhccccccccccchhhcc-----cch
Confidence 4569999999999999999999999999999 8889999999999999999999999999999988877655 222
Q ss_pred cccC-CCcHHHHHHhhCCCchhHHHHHHHHHHHhCC---CCcccCCCcccccCCCCCCCChhhhhhhccchhHHHHHHHH
Q psy12239 445 EIIG-SSPTEMLYQKMLPNLPQYMIALLKILLAAAP---TSKAKTDSINILSDVLPEEMPMTILQSMKLGTDVNRHKEII 520 (785)
Q Consensus 445 ~~i~-~~~vE~fY~~~Lp~L~s~vivLLk~lla~~~---~~~~~~~~~n~~~d~~p~~~~~~~~~~~~~~ld~~R~kEI~ 520 (785)
++|+ ++|||+||++|||+|+|+||||||+|+|++| ++.++++++|+.++..+++++.+..+++++++|++|||||+
T Consensus 82 ~ei~rl~rVE~fY~~~LP~L~s~ViVLLkiilan~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ld~~R~kEI~ 161 (409)
T PF11882_consen 82 EEIQRLDRVESFYRQCLPSLQSLVIVLLKIILANVPDLNNNEAKTNSINIFADVSPDEMPSSVIESLLEQLDILRHKEIT 161 (409)
T ss_pred hhhhcccHHHHHHHHHhhhHHHHHHHHHHHHHHhCccccccccccccccccccCCCCCCccchhhhhHHHHHHHHHHHHH
Confidence 3455 8999999999999999999999999999999 56667777888888888888877778888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHhhc-ccchhhhccCCCCCCCCC-CccccCC-------CC
Q psy12239 521 VKAISSILLLLLKHFKLNHVYQFEFMSQHLVFANCIPLVLKFFN-QNISMYISAKSVIPILDF-PACVIGD-------QP 591 (785)
Q Consensus 521 ~KAvs~iLlLLLKwFK~sHilkFEylsqlL~dsN~~pliLK~fn-q~i~~~v~~k~~~~~~~f-~~c~~~~-------~p 591 (785)
+||+||||||||||||+|||||||||||+|+|+||+|++||||| ||+.++|.+|++++.++| .+|..+. .|
T Consensus 162 ~KA~s~iLlLLLKwFK~sHvlkFEylsqlL~dsn~~~lilk~l~~q~~~~~v~~k~~~~~~~Ff~~c~~~~~~~~~~~~~ 241 (409)
T PF11882_consen 162 LKAVSGILLLLLKWFKLSHVLKFEYLSQLLLDSNYIPLILKFLNHQNVNQYVNSKNDIPDLSFFNFCSGHSSQYQFPNRP 241 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHhhhhHHHHHHhhhcCccccccHHHhhccccccccCCC
Confidence 99999999999999999999999999999999999999999998 999999999999999996 6665542 34
Q ss_pred CCCcccccCCC----CCCCCcchhHHHHHHHHHHHHHHhcccccceeeeecccchHHHHhhhhccchhhhHHHHHHHhhh
Q psy12239 592 ELTSESFEIGE----GQTPHSWRNLVSCINLLRILNKLTKWKHSRIMMLVIFKSAPILKRTLKVRHAMMQLYVLKLLKMQ 667 (785)
Q Consensus 592 ~~~~~~~~~~~----~~~~fs~Rn~fS~in~LrIlqKitK~K~~R~~~Lv~~Kss~ILKk~Lkv~~~~l~ly~LKl~K~q 667 (785)
+.++.+.+.++ +++.||||||||+||+|||||||||||+||+++||+||||+||||+|+|+||+||+|||||||+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~s~Rn~fs~in~LrIlqKitK~k~~R~~~Lv~~Kss~iLKk~l~v~~~~l~ly~LKl~K~q 321 (409)
T PF11882_consen 242 EVDELSYPTGENPKEPITEYSWRNFFSLINLLRILQKITKNKPHRIKMLVQYKSSNILKKILKVPNPMLQLYILKLLKSQ 321 (409)
T ss_pred ccccccCCCCCCCcccchhhchhHHHHHHHHHHHHHHHHcCcHHHHHHHHccCcHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 55544444333 25569999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhcccchhhHhhhcccCCCCCCccCCCCCCCCCccchHHHHHHHHHHHhhccccCCCCCCCCCccccccccc
Q psy12239 668 TKYLGRQWRKSNMKTISAIYAKVRHRLNDDWAYGNDLDARPWDFQAEECALRASVDRFNSRRYNSTCFDPDYESSDNSIG 747 (785)
Q Consensus 668 vPy~gRKWRqsNM~vIS~IYl~~R~~L~DdWl~g~Did~e~~d~~~~E~aLR~li~~yN~r~Y~~~~~~~~~~~~d~~~~ 747 (785)
||||||||||+||+|||+|||||||+|+|||++|+|+|+|++||++||+|||+||||||.|||+++| ++|++++
T Consensus 322 vPy~GRKWr~~NM~vIS~IYL~~r~~L~DdWl~g~D~d~e~~~~~~~E~aLR~l~~~yn~r~Y~~~m------~~~~~~~ 395 (409)
T PF11882_consen 322 VPYCGRKWRQSNMRVISAIYLYCRPELRDDWLAGKDVDAEVEDAQPQEQALRALVQFYNFRRYPDQM------GVDNQLQ 395 (409)
T ss_pred cccccchhhhhhHHHHHHHHHhcCCCCccccccCCCCCCCchhhHHHHHHHHHHHHHHHHhhccccc------cchhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 6678899
Q ss_pred ccccCcccCChhhHHHH
Q psy12239 748 SVLSHPIELTEDFKQHY 764 (785)
Q Consensus 748 s~l~~~~~l~~~f~~~y 764 (785)
++++ +..|-|.+.|
T Consensus 396 ~~~~---e~~d~f~~e~ 409 (409)
T PF11882_consen 396 SLLN---EERDFFVREL 409 (409)
T ss_pred HHHH---HHHHHHhhcC
Confidence 9998 4566666543
No 3
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=100.00 E-value=1.6e-64 Score=539.69 Aligned_cols=272 Identities=36% Similarity=0.608 Sum_probs=248.9
Q ss_pred CCccceEeCCCCChhHHHhhhcccCchhhhhhhHHHHHHHHHhccCCCccccCChHHHHHHHHHHHHhhcccChHHhHHH
Q psy12239 30 SPEVRYIYDDTDYHQNEISEIYSYTEQPEFQLNVKNFEDQMEAYGLIPCWQKLTPVEKNSVIAKLLDQLEVSNKVVRMRS 109 (785)
Q Consensus 30 ~p~~~F~Y~D~d~~~~Ei~EwysY~e~~~~~ln~~~fe~~~~~~~~~~~W~~~~~~~r~~~i~~Ll~~le~~~~~~Rl~a 109 (785)
+|+|+|+|+|+|+|++||+|||||+|...++.|+++||+.|..++.+.+|++++.++|++||++++++|++++...|++|
T Consensus 1 qp~~~f~Y~D~dsl~~El~EwFsY~d~~~l~~~k~~Fe~~~~~~~~~~~W~~~~~~~~~~~i~~ll~~L~~~~~~~R~~a 80 (293)
T PF07923_consen 1 QPDYDFEYDDSDSLEEELSEWFSYSDYPELLGNKKAFEQDWRSFCQDPSWDELSFDQRKDFIEKLLDQLESSDSEDRLEA 80 (293)
T ss_pred CCceeEEecCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhccccccccchhhHHHHHHHHHHhccccchhhHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhhhhccCCC--ccchhccccCccchHHHHHHHHHH
Q psy12239 110 ARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNLEIDSSSN--TTTVRKLAVSLHDSTDLRIILSVL 187 (785)
Q Consensus 110 ~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ei~~~~~--~~~~~~~~~sl~~s~el~~~Ltil 187 (785)
+|+|||+|||+||+|++.++|++|||+||++|++|||+++|+++|+++++++++ ....+.++.+.+++++|+++||||
T Consensus 81 l~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~LTil 160 (293)
T PF07923_consen 81 LRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQDSNLPAVSLADSTELRVLLTIL 160 (293)
T ss_pred HHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876 223445556678999999999999
Q ss_pred HhhhhhhccCCCCcchhhhHHHHHHHhcCCCCCchHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHcCChhHHHH
Q psy12239 188 CTIVEVVRHLEPNVRHSSVFEMLKNEISNPIGDELLAVKLFKMVTRFCSGATPHFPMKKVLILLWKVILVSLGGMKDLQE 267 (785)
Q Consensus 188 Y~~Ve~~r~~~~~~~~~~~r~~f~~eL~~p~~~~~L~~~L~~~v~~lr~~~a~~~P~kkvlLLlWK~lL~~fGG~~~L~~ 267 (785)
|+||||+|++++.+++...+..|+.+| .+|+|+++|++||++|||++++|||||||||||||+||++|||+++|++
T Consensus 161 Y~~vev~r~~~~~~~~~~~~~~~~~~L----~~p~ll~~L~~~i~~~rw~~~~~~pikkvlLLlwK~lLl~fGg~~~l~~ 236 (293)
T PF07923_consen 161 YFMVEVARRDRDSPEWMAIVREFIMEL----EEPNLLVFLFKMIEKLRWDSAPHFPIKKVLLLLWKLLLLQFGGSKELKE 236 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999877777888889999989 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCc----hhHH------------HhhcccCCCCCCChhhhH
Q psy12239 268 LKKEKRKQNGLKVLDE----DTIE------------IAKTMRPSSPPASAVDII 305 (785)
Q Consensus 268 ~K~~~r~~~gl~~~~e----d~i~------------i~~~~~a~sPp~~~~dL~ 305 (785)
+|+..|+.+|++.... ..++ |++|||+|.||.+.+|++
T Consensus 237 ~K~~~r~~~~l~~~~~~~~~~~lt~SPLDy~~FRqei~sKyP~y~pp~~~~p~e 290 (293)
T PF07923_consen 237 TKKFLREKHGLPKDMRDSSPPKLTASPLDYHAFRQEITSKYPAYNPPPPLIPLE 290 (293)
T ss_pred HHHHHHHHcCCCcCCCCCCCCccccChHhHHHhhHHHHhhCcCCCCCCCCCCCC
Confidence 9999999999982221 1222 778888888888766654
No 4
>PF11882 DUF3402: Domain of unknown function (DUF3402); InterPro: IPR021819 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 350 to 473 amino acids in length. This domain is found associated with PF07923 from PFAM.
Probab=96.47 E-value=0.0012 Score=75.06 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=29.8
Q ss_pred CcchhHHHHHHHhccccChhhhhhhhhHhhh
Q psy12239 406 PHPIHESVKVLKQHIYTSLSEVHIQKEEEIN 436 (785)
Q Consensus 406 P~sI~Ea~~il~~~~y~sls~~Ql~~E~e~~ 436 (785)
|+||.||+++|++|||+++|++|+|+|||.+
T Consensus 1 P~si~EAg~lfs~~vr~t~a~~QLW~ERe~F 31 (409)
T PF11882_consen 1 PYSIQEAGELFSSRVRMTRAMKQLWEEREKF 31 (409)
T ss_pred CcchhhhhhhhhhcccccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999955
No 5
>KOG1924|consensus
Probab=68.46 E-value=7.7 Score=47.45 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhcccccc
Q psy12239 106 RMRSARCFLYLAQGCWGE 123 (785)
Q Consensus 106 Rl~a~r~llYlaqG~~~e 123 (785)
-.+++||+=-+....||-
T Consensus 209 ~~eiIrClka~mNn~~Gl 226 (1102)
T KOG1924|consen 209 LQEIIRCLKAFMNNKFGL 226 (1102)
T ss_pred HHHHHHHHHHHhccccce
Confidence 346778887777777774
No 6
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=61.96 E-value=18 Score=35.12 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHh
Q psy12239 85 VEKNSVIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYK 143 (785)
Q Consensus 85 ~~r~~~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~ 143 (785)
+....++..|+..|+.+++-+.+++++.|-|+++.- .++-..|+++|+....+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G------~~~f~~~~~~~~~~Ik~ 86 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG------NSDFKRELQRNSAQIRE 86 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC------CHHHHHHHHHhHHHHHH
Confidence 334456788899999999999999999999998762 46678899999865544
No 7
>KOG0166|consensus
Probab=44.15 E-value=2.2e+02 Score=34.03 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=57.0
Q ss_pred hhHHHhhhcccCchhhhhhh-HHHHHHHHHhccCCCccccCChHHHHHHHHHHHHhhccc-ChHHhHHHHHHHHHHhccc
Q psy12239 43 HQNEISEIYSYTEQPEFQLN-VKNFEDQMEAYGLIPCWQKLTPVEKNSVIAKLLDQLEVS-NKVVRMRSARCFLYLAQGC 120 (785)
Q Consensus 43 ~~~Ei~EwysY~e~~~~~ln-~~~fe~~~~~~~~~~~W~~~~~~~r~~~i~~Ll~~le~~-~~~~Rl~a~r~llYlaqG~ 120 (785)
...++.-.||=.... ++- ..+|........ ..| +....+...|.++++.++.. ....+++|+.+|.+||-|+
T Consensus 68 ~~~~~~~~~S~~~~~--q~~a~~~~rkllS~~~--~pp--i~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt 141 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQ--QLTATQAFRKLLSKER--NPP--IDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT 141 (514)
T ss_pred hHHHHHHHhCCCHHH--HHHHHHHHHHHHccCC--CCC--HHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc
Confidence 555666666633322 322 555555443321 133 33566668889999999855 4888999999999999997
Q ss_pred ccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 121 WGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 121 ~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
-..| .++.++|+++.++.+|.
T Consensus 142 se~T--------------~~vv~agavp~fi~Ll~ 162 (514)
T KOG0166|consen 142 SEQT--------------KVVVDAGAVPIFIQLLS 162 (514)
T ss_pred hhhc--------------cccccCCchHHHHHHhc
Confidence 5332 23445555555555554
No 8
>KOG1924|consensus
Probab=34.20 E-value=41 Score=41.61 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=7.6
Q ss_pred HHHHHHHHhccccccee
Q psy12239 618 LLRILNKLTKWKHSRIM 634 (785)
Q Consensus 618 ~LrIlqKitK~K~~R~~ 634 (785)
+|+-|--||+.|--+++
T Consensus 863 LLHfLae~~e~kypd~l 879 (1102)
T KOG1924|consen 863 LLHFLAEICEEKYPDIL 879 (1102)
T ss_pred HHHHHHHHHHHhChhhh
Confidence 34444445544444443
No 9
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=32.86 E-value=82 Score=22.63 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=23.4
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcc
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQG 119 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG 119 (785)
+..+++.+++.+.+.|..|+.+|-=++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45677888899999999999999877765
No 10
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=27.44 E-value=46 Score=25.18 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.5
Q ss_pred HhHHHHHhcCcHHHHHHHHh
Q psy12239 136 KNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 136 ~N~~lL~~~g~~~~l~~lL~ 155 (785)
+|...+.++|++++|+++|+
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~ 22 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLK 22 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHc
Confidence 57889999999999999997
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=22.66 E-value=2.8e+02 Score=24.33 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=40.8
Q ss_pred HHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 90 VIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 90 ~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
.+..+++-+...+...|..++.+|..++.+. ..+...+.+.|+++.+.++|+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--------------~~~~~~~~~~~~i~~l~~~l~~ 60 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN--------------NDNIQAVVEAGGLPALVQLLKS 60 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHCCChHHHHHHHhC
Confidence 4677778777888889999999999888773 2233444567999999999864
No 12
>KOG0166|consensus
Probab=22.33 E-value=5.1e+02 Score=31.14 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=58.2
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhhhhccCCCccchhcc
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNLEIDSSSNTTTVRKL 170 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ei~~~~~~~~~~~~ 170 (785)
+-.|+..++.++-..|-+|+-+|.=++.|. ..+| ...|+++|++++++++| ..-
T Consensus 366 ~p~Li~~l~~~ef~~rKEAawaIsN~ts~g------~~~q-------i~yLv~~giI~plcdlL-~~~------------ 419 (514)
T KOG0166|consen 366 IPVLINLLQTAEFDIRKEAAWAISNLTSSG------TPEQ-------IKYLVEQGIIKPLCDLL-TCP------------ 419 (514)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhhcccC------CHHH-------HHHHHHcCCchhhhhcc-cCC------------
Confidence 356778888899889999999999777663 2444 46789999999999999 221
Q ss_pred ccCccchHHHHHHHHHHHhhhhhhccCC
Q psy12239 171 AVSLHDSTDLRIILSVLCTIVEVVRHLE 198 (785)
Q Consensus 171 ~~sl~~s~el~~~LtilY~~Ve~~r~~~ 198 (785)
|..-+.++|..+|.|..+.....
T Consensus 420 -----D~~ii~v~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 420 -----DVKIILVALDGLENILKVGEAEK 442 (514)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHhc
Confidence 23347799999999988766543
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=20.65 E-value=2.9e+02 Score=24.31 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 89 SVIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 89 ~~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
..+..+++-+...+...|..|+.++..++++.. .+...+.+.|+++.+.++|..
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--------------DNKLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--------------HHHHHHHHCCChHHHHHHHhc
Confidence 456777777778888999999999999987642 344556678999999998863
Done!