Query psy12239
Match_columns 785
No_of_seqs 154 out of 171
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 22:21:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 38.2 47 0.0016 31.7 6.1 52 91-156 4-55 (252)
2 4db8_A Armadillo-repeat protei 38.0 47 0.0016 32.1 6.1 54 89-156 54-107 (252)
3 4db6_A Armadillo repeat protei 37.8 55 0.0019 30.6 6.4 52 90-155 55-106 (210)
4 1vdy_A Hypothetical protein (R 36.2 79 0.0027 30.0 7.1 49 90-144 50-98 (140)
5 3ul1_B Importin subunit alpha- 32.5 1.6E+02 0.0055 32.4 10.0 74 91-195 360-433 (510)
6 3tt9_A Plakophilin-2; cell adh 32.2 81 0.0028 32.0 6.9 53 90-156 53-105 (233)
7 1xqr_A HSPBP1 protein; armadil 31.6 50 0.0017 34.5 5.4 52 91-156 169-220 (296)
8 4db8_A Armadillo-repeat protei 31.5 76 0.0026 30.5 6.4 52 90-155 139-190 (252)
9 3tpo_A Importin subunit alpha- 31.2 84 0.0029 34.8 7.5 74 90-194 378-451 (529)
10 3ul1_B Importin subunit alpha- 30.2 58 0.002 36.0 5.9 54 88-155 99-153 (510)
11 1xqr_A HSPBP1 protein; armadil 28.6 89 0.003 32.6 6.7 52 91-156 83-135 (296)
12 4db6_A Armadillo repeat protei 28.1 89 0.0031 29.2 6.1 52 90-155 139-190 (210)
13 4hxt_A De novo protein OR329; 26.8 95 0.0032 29.5 6.1 53 89-155 44-96 (252)
14 3tpo_A Importin subunit alpha- 21.2 1.2E+02 0.0041 33.6 6.3 55 87-155 117-172 (529)
15 3tt9_A Plakophilin-2; cell adh 21.0 92 0.0032 31.5 4.9 52 91-156 10-63 (233)
16 1xm9_A Plakophilin 1; armadill 21.0 1.5E+02 0.0051 32.3 6.9 53 89-155 44-96 (457)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=38.20 E-value=47 Score=31.66 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=43.5
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
|..|++.|.+.+.+.|..|+++|..++.+.- +|...+.+.|+++.++++|+.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~--------------~~~~~~~~~g~i~~L~~ll~~ 55 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPA--------------SAIKAIVDAGGVEVLVKLLTS 55 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH--------------HHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--------------HHHHHHHHCCCHHHHHHHHhC
Confidence 6778888889999999999999999988741 355677788999999999863
No 2
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=37.97 E-value=47 Score=32.08 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 89 SVIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 89 ~~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
..|..|+.-|.+.+.+.|..|+.+|..++.|.- .|...+.+.|+++.++++|+.
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~i~~~g~i~~L~~lL~~ 107 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGN--------------EQIQAVIDAGALPALVQLLSS 107 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--------------HHHHHHHHTTHHHHHHHGGGC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH--------------HHHHHHHHcCCHHHHHHHHcC
Confidence 356788888999999999999999999987641 245667788999999999864
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=37.77 E-value=55 Score=30.65 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=42.3
Q ss_pred HHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 90 VIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 90 ~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
.|..|++-|.+.+.+.|..|+++|..++.|. ..+...+.+.|+++.++++|.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--------------~~~~~~i~~~g~i~~L~~lL~ 106 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGG--------------NEQIQAVIDAGALPALVQLLS 106 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTCHHHHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--------------cHHHHHHHHCCCHHHHHHHHc
Confidence 4678888888889999999999999998764 124456778899999999985
No 4
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=36.23 E-value=79 Score=30.00 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=38.8
Q ss_pred HHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhc
Q psy12239 90 VIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKF 144 (785)
Q Consensus 90 ~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~ 144 (785)
.+..|+..|.......-++|++.|-|+.. .+.+.-+.++++|+..+..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~------~Gs~~f~~~~r~~~~~Ik~l 98 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVG------KSGSEFRREMQRNSVAVRNL 98 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTT------TSCHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHH------hCCHHHHHHHHHhHHHHHHH
Confidence 35667778888888899999999999873 23467899999999766554
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=32.46 E-value=1.6e+02 Score=32.42 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=51.6
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhhhhccCCCccchhcc
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNLEIDSSSNTTTVRKL 170 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ei~~~~~~~~~~~~ 170 (785)
+..|++-+...+...|.+|+.+|.-++.|. ..+ ++..|.++|++++|+++|...
T Consensus 360 i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~------~~~-------~~~~L~~~g~i~~L~~LL~~~------------- 413 (510)
T 3ul1_B 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGG------TVE-------QIVYLVHCGIIEPLMNLLSAK------------- 413 (510)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHC------CHH-------HHHHHHHTTCHHHHHHGGGCS-------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHccC------CHH-------HHHHHHHCCCHHHHHHHhcCC-------------
Confidence 455777777888888888888888877653 122 345678999999999998422
Q ss_pred ccCccchHHHHHHHHHHHhhhhhhc
Q psy12239 171 AVSLHDSTDLRIILSVLCTIVEVVR 195 (785)
Q Consensus 171 ~~sl~~s~el~~~LtilY~~Ve~~r 195 (785)
|..-..++|..++-|.....
T Consensus 414 -----d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 414 -----DTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHhH
Confidence 23334567777777776554
No 6
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=32.22 E-value=81 Score=31.97 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=43.7
Q ss_pred HHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 90 VIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 90 ~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
-|..|++-|.+.+.+.+..|+.+|.-++.|. .+|-..+.++|++++|+++|+.
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~--------------~~nk~~I~~~GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFED--------------NDNKLEVAELNGVPRLLQVLKQ 105 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--------------HHHHHHHHHcCCHHHHHHHHcc
Confidence 3678888888989999999999999888763 2355677889999999999974
No 7
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=31.63 E-value=50 Score=34.49 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=41.3
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
+..|+.-|.+.+...+.+|+.+|.|++.|. .++...+.+.|++++++++|..
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--------------~~~~~~vv~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--------------PEHKGTLCSMGMVQQLVALVRT 220 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------------GGGHHHHHHTTHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--------------hHHHHHHHHcCCHHHHHHHHcC
Confidence 446666667788899999999999999882 1245677899999999999963
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=31.51 E-value=76 Score=30.53 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=41.6
Q ss_pred HHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 90 VIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 90 ~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
.+..|++-|...+...|..|+.+|..++.+. ..+...+.+.|+++.++++|.
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--------------~~~~~~~~~~~~i~~L~~ll~ 190 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGG--------------NEQIQAVIDAGALPALVQLLS 190 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTCHHHHHHGGG
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--------------hHHHHHHHHCCCHHHHHHHHC
Confidence 5677888888888889999999999998764 123456778999999999986
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=31.17 E-value=84 Score=34.77 Aligned_cols=74 Identities=16% Similarity=0.322 Sum_probs=51.1
Q ss_pred HHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhhhhccCCCccchhc
Q psy12239 90 VIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNLEIDSSSNTTTVRK 169 (785)
Q Consensus 90 ~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ei~~~~~~~~~~~ 169 (785)
.+..|+..+...+...|..|+.+|.-++.|. .. +++..|.+.|++++|+++|...
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~------~~-------~~~~~l~~~g~i~~L~~LL~~~------------ 432 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGG------TV-------EQIVYLVHCGIIEPLMNLLSAK------------ 432 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS------CH-------HHHHHHHHTTCHHHHHHGGGCS------------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC------CH-------HHHHHHHHCcCHHHHHHHhcCC------------
Confidence 3456777777888888999999998887653 12 2455678999999999998421
Q ss_pred cccCccchHHHHHHHHHHHhhhhhh
Q psy12239 170 LAVSLHDSTDLRIILSVLCTIVEVV 194 (785)
Q Consensus 170 ~~~sl~~s~el~~~LtilY~~Ve~~ 194 (785)
|..-..++|..|+-|....
T Consensus 433 ------d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 433 ------DTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHHHh
Confidence 2233446666666666543
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=30.24 E-value=58 Score=36.00 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhccc-ChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 88 NSVIAKLLDQLEVS-NKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 88 ~~~i~~Ll~~le~~-~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
...|-.|++-|..+ +.+.+..|+++|.++|-|.- +|...+.+.|+++.|+.+|+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~--------------e~~~~vv~~GaIp~Lv~lL~ 153 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS--------------EQTKAVVDGGAIPAFISLLA 153 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH--------------HHHHHHHHTTHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH--------------HHHHHHHHCCCHHHHHHHHc
Confidence 34577788888755 47889999999999998852 34567788999999999996
No 11
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=28.57 E-value=89 Score=32.57 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHHHH-hhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 91 IAKLLD-QLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 91 i~~Ll~-~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
+..|+. -|.+.+.+.|-.|+++|-.++++. +. +. ..+.++|++++|+.+|+.
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n------~~-~~-------~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV------AA-IQ-------EQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC------HH-HH-------HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC------HH-HH-------HHHHHCCCHHHHHHHHcc
Confidence 456777 778889999999999999999873 11 11 235678999999999974
No 12
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=28.10 E-value=89 Score=29.17 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 90 VIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 90 ~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
.+..|++-+...+...|..|+.+|..++.+. ..+...+.+.|+++.++++|.
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--------------~~~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGG--------------NEQKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC--------------HHHHHHHHHTTHHHHHHHGGG
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--------------cHHHHHHHHCCCHHHHHHHHh
Confidence 4677888888888888999999999887653 134467889999999999886
No 13
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=26.83 E-value=95 Score=29.46 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 89 SVIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 89 ~~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
..|..|++-|.+.+.+.|..|+++|..++.+. ..+...+.+.|+++.++++|+
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--------------~~~~~~~~~~~~i~~l~~ll~ 96 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGP--------------DEAIKAIVDAGGVEVLVKLLT 96 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTHHHHHHHHTT
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--------------hHHHHHHHHCCCHHHHHHHHc
Confidence 35778888888999999999999999888753 234556778899999999987
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=21.16 E-value=1.2e+02 Score=33.55 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhccc-ChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 87 KNSVIAKLLDQLEVS-NKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 87 r~~~i~~Ll~~le~~-~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
+...|..|++-|..+ +...+..|+.+|..++.|.- ++...+.+.|+++.|+.+|.
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~--------------~~~~~vv~~Gaip~Lv~LL~ 172 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS--------------EQTKAVVDGGAIPAFISLLA 172 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH--------------HHHHHHHHTTHHHHHHHHTT
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH--------------HHHHHHHHCCCHHHHHHHHc
Confidence 345677888888655 57889999999999998852 23556789999999999885
No 15
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=21.01 E-value=92 Score=31.55 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=39.9
Q ss_pred HHHHHHhhcccCh--HHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 91 IAKLLDQLEVSNK--VVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 91 i~~Ll~~le~~~~--~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
+..|++.|.+.+. .....|+.+|..++.|.- .|-..+.+.|++++|+++|+.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~--------------~~r~~I~~~G~Ip~LV~lL~s 63 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKS--------------EARKRVNQLRGILKLLQLLKV 63 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH--------------HHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc--------------HHHHHHHHcCCHHHHHHHHcC
Confidence 5678888888887 777888898887776531 234456789999999999964
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=20.99 E-value=1.5e+02 Score=32.28 Aligned_cols=53 Identities=23% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 89 SVIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 89 ~~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
..|..|++-|.+.+...+..|+.+|.-++.|. -+|-..+.++|++++++++|+
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~--------------~~~k~~i~~~G~i~~Lv~lL~ 96 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRS--------------TTNKLETRRQNGIREAVSLLR 96 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC--------------HHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHcCCHHHHHHHHh
Confidence 34678888888888889999999999888762 135566789999999999996
Done!