Query psy12239
Match_columns 785
No_of_seqs 154 out of 171
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 22:21:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12239.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12239hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xm9a1 a.118.1.24 (A:244-700) 50.7 6 0.00044 37.7 4.5 51 91-155 4-54 (457)
2 d1q1sc_ a.118.1.1 (C:) Importi 21.6 2.1E+02 0.016 26.8 10.6 52 91-155 316-367 (434)
3 d1f44a1 a.60.9.1 (A:20-129) Cr 21.2 1.3E+02 0.0096 24.3 7.6 84 41-127 2-92 (110)
4 d1xqra1 a.118.1.21 (A:87-350) 17.5 68 0.005 29.3 5.4 51 91-155 146-196 (264)
5 d1xm9a1 a.118.1.24 (A:244-700) 15.8 1.1E+02 0.0082 28.1 6.6 52 91-156 46-97 (457)
6 d1q1sc_ a.118.1.1 (C:) Importi 12.4 1.8E+02 0.013 27.2 7.3 56 86-155 185-240 (434)
7 d1wa5b_ a.118.1.1 (B:) Karyoph 11.0 1.8E+02 0.013 28.4 6.8 56 87-156 117-173 (503)
8 d1xqra1 a.118.1.21 (A:87-350) 9.8 2.3E+02 0.017 25.4 6.7 52 91-156 60-112 (264)
9 d1a0pa1 a.60.9.1 (A:3-100) Rec 7.5 1.2E+02 0.0087 23.9 3.0 70 45-114 4-81 (98)
10 d1jdha_ a.118.1.1 (A:) beta-Ca 6.0 3.7E+02 0.027 26.1 6.6 54 90-157 267-320 (529)
No 1
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.66 E-value=6 Score=37.69 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=43.5
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
|..|++-|.+++.+.+..|+++|-.++.|. .+|...+++.||+++++++|+
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~--------------~~~~~~i~~~g~i~~Lv~lL~ 54 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD--------------ESAKQQVYQLGGICKLVDLLR 54 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC--------------SSHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHCCcHHHHHHHHC
Confidence 567888888999999999999999998774 235667889999999999985
No 2
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.64 E-value=2.1e+02 Score=26.75 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=35.2
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
+..+++.++..+...|..|+.+|..++.+. .. +.+..+.+.|++++++++|.
T Consensus 316 i~~li~~l~~~~~~v~~~a~~~l~nl~~~~------~~-------~~~~~l~~~~~i~~L~~ll~ 367 (434)
T d1q1sc_ 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGG------TV-------EQIVYLVHCGIIEPLMNLLS 367 (434)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHS------CH-------HHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHhcC------CH-------HHHHHHHHCCcHHHHHHHhc
Confidence 455666666777777777777777666542 11 23455678899999999884
No 3
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=21.17 E-value=1.3e+02 Score=24.30 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=54.8
Q ss_pred CChhHHHhhhcccCchhhhhhh-HHHHHHHHHhc-----cCCCccccCChHHHHHHHHHHHH-hhcccChHHhHHHHHHH
Q psy12239 41 DYHQNEISEIYSYTEQPEFQLN-VKNFEDQMEAY-----GLIPCWQKLTPVEKNSVIAKLLD-QLEVSNKVVRMRSARCF 113 (785)
Q Consensus 41 d~~~~Ei~EwysY~e~~~~~ln-~~~fe~~~~~~-----~~~~~W~~~~~~~r~~~i~~Ll~-~le~~~~~~Rl~a~r~l 113 (785)
|.+.+.+.+++. +...+.-| .+++..+|..+ ..+.+|..++.+.=..|+.+|-+ ++..+-...++.+++.
T Consensus 2 ~~~~~~~~~~l~--~~~~~S~nT~~aY~~dl~~f~~w~~~~~~~~l~~~~~~v~~yl~~l~~~g~s~sTi~R~lsair~- 78 (110)
T d1f44a1 2 DEVRKNLMDMFR--DRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNM- 78 (110)
T ss_dssp TTTHHHHHSCCS--CGGGSCHHHHHHHHHHHHHHHHHHHHTTCCTTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHH--HHhccCHHHHHHHHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHhcCCCccHHHHHHHHHHH-
Confidence 344445555543 23445666 77777777654 23567888998888999988776 4455555667778876
Q ss_pred HHHhcccccccCCh
Q psy12239 114 LYLAQGCWGECQSD 127 (785)
Q Consensus 114 lYlaqG~~~e~~s~ 127 (785)
+|-..|.-..+.+.
T Consensus 79 f~r~~g~~~p~~~~ 92 (110)
T d1f44a1 79 LHRRSGLPRPSDSN 92 (110)
T ss_dssp HHHHTTCCCGGGSH
T ss_pred HHHHcCCCCCcCCH
Confidence 57777877666543
No 4
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.46 E-value=68 Score=29.33 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
+..|+..+.+.+...+.+++.+|.+++.|.- .+...+.+.|+++.++++|.
T Consensus 146 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~--------------~~~~~~~~~~~v~~L~~lL~ 196 (264)
T d1xqra1 146 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP--------------EHKGTLCSMGMVQQLVALVR 196 (264)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--------------GGHHHHHHTTHHHHHHHHHT
T ss_pred hhHHHHHHhcCchHHHHHHHHHHHHHHhccH--------------HHHHHHHHhhhHHHHHHHHc
Confidence 4666677778888899999999999887631 23455678899999999985
No 5
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.84 E-value=1.1e+02 Score=28.13 Aligned_cols=52 Identities=23% Similarity=0.196 Sum_probs=40.6
Q ss_pred HHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 91 IAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 91 i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
|..|++-|++.+.+.|..|+++|.-++.+.- +|-..+.+.|+++.++.++..
T Consensus 46 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~--------------~~~~~i~~~g~v~~li~~l~~ 97 (457)
T d1xm9a1 46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRST--------------TNKLETRRQNGIREAVSLLRR 97 (457)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--------------HHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--------------HHHHHHHHCCChHHHHHHHhc
Confidence 4568888889999999999999998875431 234567789999999988753
No 6
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.37 E-value=1.8e+02 Score=27.23 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHh
Q psy12239 86 EKNSVIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLN 155 (785)
Q Consensus 86 ~r~~~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~ 155 (785)
.....+..+..-+...+.+.+..++.+|.+++++.. .+...+.+.|+++.++++++
T Consensus 185 ~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~--------------~~~~~~~~~~~~~~Lv~ll~ 240 (434)
T d1q1sc_ 185 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--------------ERIEMVVKKGVVPQLVKLLG 240 (434)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--------------HHHHHHHTTTCHHHHHHHHT
T ss_pred hhhhHHHHHHHHHhccccchhhhHHhhhcccchhhh--------------hhHHHHhhcccchhcccccc
Confidence 344556666666778888999999999999986531 23455778899999999875
No 7
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.01 E-value=1.8e+02 Score=28.43 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhcc-cChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 87 KNSVIAKLLDQLEV-SNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 87 r~~~i~~Ll~~le~-~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
+...+..|++.+.. .+.+.+..|+++|.+++.|.- .....+.+.|+++.++.+|..
T Consensus 117 ~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~--------------~~~~~~~~~g~i~~l~~lL~s 173 (503)
T d1wa5b_ 117 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS--------------AQTKVVVDADAVPLFIQLLYT 173 (503)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH--------------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH--------------HHHHHHHhCCChHHHHHHhcC
Confidence 34456778888874 467789999999999998751 223456788999999999964
No 8
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.82 E-value=2.3e+02 Score=25.39 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHH-hhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhh
Q psy12239 91 IAKLLD-QLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNL 156 (785)
Q Consensus 91 i~~Ll~-~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~ 156 (785)
+..++. -+.+.+.+.|..|+..|-.++++. +. +-..+.+.|+++.++.+|..
T Consensus 60 ~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~------~~--------~~~~~~~~~~i~~Lv~lL~~ 112 (264)
T d1xqra1 60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV------AA--------IQEQVLGLGALRKLLRLLDR 112 (264)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC------HH--------HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH------HH--------HHHHHHHcCchHHHHHHhhc
Confidence 344555 455678888888888888887653 11 22355678999999998864
No 9
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=7.53 E-value=1.2e+02 Score=23.92 Aligned_cols=70 Identities=7% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHhhhcccCch-hhhhhh-HHHHHHHHHhc-----cCCCccccCChHHHHHHHHHHHH-hhcccChHHhHHHHHHHH
Q psy12239 45 NEISEIYSYTEQ-PEFQLN-VKNFEDQMEAY-----GLIPCWQKLTPVEKNSVIAKLLD-QLEVSNKVVRMRSARCFL 114 (785)
Q Consensus 45 ~Ei~EwysY~e~-~~~~ln-~~~fe~~~~~~-----~~~~~W~~~~~~~r~~~i~~Ll~-~le~~~~~~Rl~a~r~ll 114 (785)
..|++|..|-.. ..+.-| .+++..+...+ ..+.+|.+++.+.=++|+..+.+ ++..+....++.|+|...
T Consensus 4 ~~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~~~~~~i~~~~i~~yl~~l~~~g~s~~Ti~r~lsalr~ff 81 (98)
T d1a0pa1 4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLF 81 (98)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 347777776543 234444 55555444332 12346888888777777766544 244445556777777665
No 10
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.01 E-value=3.7e+02 Score=26.07 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=33.5
Q ss_pred HHHHHHHhhcccChHHhHHHHHHHHHHhcccccccCChHHHHHHHHHhHHHHHhcCcHHHHHHHHhhh
Q psy12239 90 VIAKLLDQLEVSNKVVRMRSARCFLYLAQGCWGECQSDDEQYDTAVKNCIMLYKFGVFHAFIDLLNLE 157 (785)
Q Consensus 90 ~i~~Ll~~le~~~~~~Rl~a~r~llYlaqG~~~e~~s~~~Ql~~i~~N~~lL~~~g~~~~l~~lL~~e 157 (785)
.+..|+.-++..+...+..|+++|..++.+. ..|...+.+.|+++.++.++...
T Consensus 267 ~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~--------------~~~~~~i~~~~~i~~Li~~l~~~ 320 (529)
T d1jdha_ 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNN--------------YKNKMMVCQVGGIEALVRTVLRA 320 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cchhhhhhcccccHHHHHHHHHHHHhhccch--------------hHHHHHHHHhhhHHHHHHHHHhh
Confidence 4455555555566666666666665554331 12455677889999999888654
Done!