Query psy1224
Match_columns 81
No_of_seqs 96 out of 98
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 22:22:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00769 ERM: Ezrin/radixin/mo 100.0 2.9E-34 6.2E-39 213.2 6.2 71 7-77 174-244 (246)
2 KOG3529|consensus 99.8 2E-19 4.4E-24 148.2 1.7 76 2-77 519-594 (596)
3 KOG3436|consensus 83.4 1.3 2.8E-05 31.1 2.8 23 16-38 13-35 (123)
4 PF15003 HAUS2: HAUS augmin-li 75.3 14 0.00031 29.0 6.5 57 3-64 39-98 (277)
5 smart00338 BRLZ basic region l 70.7 14 0.0003 21.8 4.5 22 16-37 41-62 (65)
6 PF14916 CCDC92: Coiled-coil d 70.1 7.3 0.00016 24.1 3.2 39 8-46 2-45 (60)
7 KOG0114|consensus 68.1 0.46 1E-05 33.3 -2.8 16 56-71 40-55 (124)
8 PF08172 CASP_C: CASP C termin 67.0 19 0.00042 27.3 5.5 45 3-52 81-125 (248)
9 PF00170 bZIP_1: bZIP transcri 66.8 21 0.00045 21.1 4.6 18 17-34 42-59 (64)
10 PF08826 DMPK_coil: DMPK coile 61.7 26 0.00055 21.6 4.4 27 9-35 32-59 (61)
11 PF14942 Muted: Organelle biog 61.5 50 0.0011 23.2 6.5 58 6-63 84-143 (145)
12 PF07061 Swi5: Swi5; InterPro 58.7 30 0.00065 22.3 4.5 34 19-52 18-51 (83)
13 PF06305 DUF1049: Protein of u 58.0 13 0.00027 21.8 2.6 20 16-35 49-68 (68)
14 PF04880 NUDE_C: NUDE protein, 56.1 6.8 0.00015 28.4 1.3 29 7-36 23-51 (166)
15 PF10224 DUF2205: Predicted co 55.8 53 0.0012 21.2 5.4 38 12-54 20-57 (80)
16 cd00890 Prefoldin Prefoldin is 55.0 37 0.0008 21.7 4.6 31 6-36 91-122 (129)
17 PRK10803 tol-pal system protei 54.2 44 0.00096 25.1 5.5 52 8-63 39-100 (263)
18 PF07710 P53_tetramer: P53 tet 53.6 9.2 0.0002 22.2 1.4 15 53-67 16-30 (42)
19 COG1382 GimC Prefoldin, chaper 53.5 33 0.00072 23.8 4.4 16 18-33 94-109 (119)
20 PF07334 IFP_35_N: Interferon- 52.6 28 0.00061 22.5 3.7 26 12-37 4-29 (76)
21 PF00816 Histone_HNS: H-NS his 51.5 40 0.00087 21.1 4.3 37 18-54 1-37 (93)
22 TIGR00984 3a0801s03tim44 mitoc 47.4 32 0.00069 28.0 4.0 39 12-61 5-43 (378)
23 KOG0996|consensus 47.3 1.1E+02 0.0023 29.0 7.5 59 18-77 861-920 (1293)
24 PF15082 DUF4549: Domain of un 45.7 35 0.00076 24.6 3.6 24 9-34 10-33 (144)
25 PF05837 CENP-H: Centromere pr 42.4 97 0.0021 20.3 6.2 52 15-67 31-83 (106)
26 KOG2580|consensus 40.5 63 0.0014 27.2 4.8 29 6-34 68-96 (459)
27 PF03962 Mnd1: Mnd1 family; I 40.1 61 0.0013 23.4 4.2 29 8-36 103-131 (188)
28 PF08172 CASP_C: CASP C termin 39.1 71 0.0015 24.2 4.6 34 6-39 90-124 (248)
29 PF14282 FlxA: FlxA-like prote 38.2 65 0.0014 21.2 3.8 19 18-36 22-40 (106)
30 cd00427 Ribosomal_L29_HIP Ribo 37.3 43 0.00093 19.7 2.6 30 17-46 8-37 (57)
31 KOG3433|consensus 36.0 1.2E+02 0.0026 23.0 5.3 43 6-48 113-156 (203)
32 KOG3119|consensus 35.8 79 0.0017 24.0 4.4 31 9-39 222-253 (269)
33 PRK13922 rod shape-determining 34.8 92 0.002 23.0 4.5 25 10-34 71-95 (276)
34 PF04977 DivIC: Septum formati 34.5 57 0.0012 19.1 2.8 20 18-37 20-39 (80)
35 cd00632 Prefoldin_beta Prefold 34.4 1.2E+02 0.0026 19.4 4.6 29 7-35 68-97 (105)
36 PF10422 LRS4: Monopolin compl 34.1 13 0.00029 28.8 0.0 48 19-76 62-109 (249)
37 PF11853 DUF3373: Protein of u 33.8 37 0.00081 28.6 2.5 15 23-37 32-46 (489)
38 KOG4196|consensus 33.4 1.1E+02 0.0025 21.8 4.6 22 42-63 89-116 (135)
39 TIGR02338 gimC_beta prefoldin, 33.2 1.3E+02 0.0028 19.5 4.6 30 6-35 71-101 (110)
40 PF11471 Sugarporin_N: Maltopo 32.6 83 0.0018 19.1 3.4 26 6-37 29-54 (60)
41 PRK00306 50S ribosomal protein 32.3 57 0.0012 19.7 2.6 23 17-39 11-33 (66)
42 PF10737 GerPC: Spore germinat 32.2 49 0.0011 24.3 2.7 21 18-38 2-22 (176)
43 COG4842 Uncharacterized protei 32.1 1.3E+02 0.0028 19.3 4.4 26 11-36 17-42 (97)
44 smart00340 HALZ homeobox assoc 32.1 51 0.0011 19.4 2.2 16 14-29 18-33 (44)
45 COG1422 Predicted membrane pro 32.1 2.1E+02 0.0047 21.5 6.1 51 9-59 66-116 (201)
46 TIGR00012 L29 ribosomal protei 31.9 61 0.0013 19.0 2.6 27 17-43 7-33 (55)
47 PRK14549 50S ribosomal protein 31.9 58 0.0013 20.1 2.6 31 17-47 14-45 (69)
48 TIGR03752 conj_TIGR03752 integ 31.7 1.3E+02 0.0029 25.3 5.4 12 23-34 67-78 (472)
49 PF00831 Ribosomal_L29: Riboso 31.5 46 0.00099 19.7 2.0 27 17-43 9-35 (58)
50 PF09730 BicD: Microtubule-ass 31.0 1.1E+02 0.0024 26.9 5.0 45 12-56 24-70 (717)
51 PRK10884 SH3 domain-containing 30.8 83 0.0018 23.2 3.7 8 43-50 155-162 (206)
52 COG0255 RpmC Ribosomal protein 28.8 66 0.0014 20.2 2.5 31 17-47 13-43 (69)
53 PF05615 THOC7: Tho complex su 28.8 1.4E+02 0.0031 19.9 4.3 30 8-37 74-103 (139)
54 PF06156 DUF972: Protein of un 28.2 1.9E+02 0.0041 19.3 5.2 19 19-37 12-30 (107)
55 TIGR02894 DNA_bind_RsfA transc 28.2 1.8E+02 0.0038 21.3 4.9 41 18-64 107-147 (161)
56 KOG4677|consensus 28.0 2.3E+02 0.0049 24.4 6.2 29 6-34 311-342 (554)
57 PRK14011 prefoldin subunit alp 27.8 1.6E+02 0.0035 20.6 4.6 32 6-37 92-124 (144)
58 PF04799 Fzo_mitofusin: fzo-li 27.6 1.8E+02 0.0039 21.3 4.9 22 56-78 144-165 (171)
59 PF11652 DUF3259: Protein of u 26.7 91 0.002 20.7 2.9 21 17-37 5-25 (84)
60 PRK13729 conjugal transfer pil 26.0 2E+02 0.0042 24.4 5.4 23 10-32 70-93 (475)
61 PF09304 Cortex-I_coil: Cortex 25.9 72 0.0016 21.9 2.5 29 9-37 3-31 (107)
62 COG1792 MreC Cell shape-determ 25.5 1.4E+02 0.0031 22.8 4.3 22 6-27 64-85 (284)
63 COG4913 Uncharacterized protei 25.2 2.3E+02 0.0049 26.2 5.9 73 1-77 224-308 (1104)
64 PF15372 DUF4600: Domain of un 25.1 1.2E+02 0.0025 21.4 3.5 27 13-39 13-39 (129)
65 PF11544 Spc42p: Spindle pole 25.0 1.1E+02 0.0024 19.8 3.1 23 14-36 4-26 (76)
66 PRK14127 cell division protein 24.9 1.9E+02 0.0041 19.6 4.4 24 13-36 42-65 (109)
67 PRK13922 rod shape-determining 24.8 2.9E+02 0.0062 20.3 6.0 43 8-52 62-104 (276)
68 PRK00461 rpmC 50S ribosomal pr 24.4 92 0.002 20.3 2.7 28 17-44 10-37 (87)
69 PF03195 DUF260: Protein of un 24.3 84 0.0018 20.8 2.5 19 18-36 81-99 (101)
70 PRK09343 prefoldin subunit bet 23.9 2E+02 0.0044 19.2 4.4 8 7-14 76-83 (121)
71 PF04363 DUF496: Protein of un 23.4 1.6E+02 0.0034 19.9 3.7 29 7-35 65-94 (95)
72 PF13234 rRNA_proc-arch: rRNA- 23.4 1.7E+02 0.0038 21.4 4.3 26 8-33 242-267 (268)
73 PF09789 DUF2353: Uncharacteri 23.2 1.1E+02 0.0024 24.4 3.4 20 8-27 161-180 (319)
74 PF13758 Prefoldin_3: Prefoldi 23.0 1.4E+02 0.003 20.1 3.4 24 6-29 72-96 (99)
75 PRK03947 prefoldin subunit alp 22.9 2.4E+02 0.0051 18.7 4.6 30 7-36 92-122 (140)
76 PF11853 DUF3373: Protein of u 22.7 82 0.0018 26.6 2.7 27 10-36 26-52 (489)
77 KOG4571|consensus 22.6 98 0.0021 24.6 3.0 21 16-36 263-283 (294)
78 KOG4253|consensus 22.6 2.5E+02 0.0055 20.8 4.9 23 12-34 41-63 (175)
79 PF09432 THP2: Tho complex sub 22.5 1.8E+02 0.0038 20.8 3.9 29 9-37 71-100 (132)
80 PTZ00269 variant surface glyco 22.3 1.6E+02 0.0034 24.5 4.2 30 7-36 337-366 (472)
81 cd04766 HTH_HspR Helix-Turn-He 22.3 1.1E+02 0.0024 18.9 2.7 17 20-36 70-86 (91)
82 PF06721 DUF1204: Protein of u 22.0 3.7E+02 0.008 20.6 6.8 22 50-73 114-143 (228)
83 COG4942 Membrane-bound metallo 22.0 2.3E+02 0.005 23.6 5.1 27 16-42 60-86 (420)
84 PRK13169 DNA replication intia 22.0 2.6E+02 0.0057 18.9 4.9 28 7-34 6-34 (110)
85 PRK00888 ftsB cell division pr 21.7 2.1E+02 0.0047 18.7 4.1 19 18-36 44-62 (105)
86 cd00584 Prefoldin_alpha Prefol 20.9 2.5E+02 0.0054 18.2 4.4 15 20-34 99-113 (129)
87 KOG4807|consensus 20.8 99 0.0021 26.4 2.8 34 23-62 520-553 (593)
88 PF15444 TMEM247: Transmembran 20.6 1.5E+02 0.0032 22.6 3.4 44 29-73 104-147 (218)
No 1
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=100.00 E-value=2.9e-34 Score=213.21 Aligned_cols=71 Identities=42% Similarity=0.605 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHHHhcchhhhHhhhh
Q psy1224 7 LFLRVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEYTQKA 77 (81)
Q Consensus 7 ~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~ir~GnTk~Ri~q~~ 77 (81)
.++|++|++||++||+||++|++||+++||++|+|++|+||++||++|+|||+|||+||+||||+|||+|-
T Consensus 174 EeeR~t~~EKnk~lq~QL~~L~~EL~~~kde~k~T~~D~~h~en~~~g~~ky~tl~~i~~g~tk~ri~~fe 244 (246)
T PF00769_consen 174 EEERVTYAEKNKRLQEQLKELKSELEQLKDEEKQTQLDIIHAENVRAGRDKYKTLRQIRQGNTKQRIDEFE 244 (246)
T ss_dssp GGC---HHHH-HHHHHHHHHHHHHHHTTB-CCG--HHHHHHHHHHHTT--HHHHHHHHT-S-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHhchhHHHHHHHHhcCCHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999994
No 2
>KOG3529|consensus
Probab=99.75 E-value=2e-19 Score=148.19 Aligned_cols=76 Identities=36% Similarity=0.441 Sum_probs=73.5
Q ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHHHhcchhhhHhhhh
Q psy1224 2 LLPCFLFLRVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEYTQKA 77 (81)
Q Consensus 2 ~~~~~~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~ir~GnTk~Ri~q~~ 77 (81)
.+|...++|++|++||.++++||.+|+.+|..+|++++++.+|++|++|+++|+|||+||++|++||||+||++|-
T Consensus 519 ~~~~~eker~te~ek~~~~k~qL~aL~~e~~~~k~~~~~t~~d~~h~~n~r~G~dk~~tLr~ir~GntKqRid~fE 594 (596)
T KOG3529|consen 519 GLPRLEKERVTEAEKNERVRDQLDALRSELAPAKDEERPTAHDILHAENVRAGRDKYKTLRQSRSGNTKQRIDQFE 594 (596)
T ss_pred cccchhHHHHHHHhhhHHHHHHHHhcccccccCCCcccccccchhhhhhcccCCCcceehhhhcCCCcchhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999994
No 3
>KOG3436|consensus
Probab=83.44 E-value=1.3 Score=31.12 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Q psy1224 16 KSKHLQDQLRDLRTEIEVLKVGE 38 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~lK~ee 38 (81)
+-+.|++||.+|+.||++|++..
T Consensus 13 ~ke~L~~ql~dLK~ELa~LRv~K 35 (123)
T KOG3436|consen 13 SKEQLLKQLDDLKVELAQLRVAK 35 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999864
No 4
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=75.27 E-value=14 Score=29.02 Aligned_cols=57 Identities=28% Similarity=0.448 Sum_probs=44.4
Q ss_pred cchHH---HHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHH
Q psy1224 3 LPCFL---FLRVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKC 64 (81)
Q Consensus 3 ~~~~~---~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~i 64 (81)
+|||. ...+..+.+--.+|..|..+.-||+-++++. ...|..|-.-+. .|+.+|..+
T Consensus 39 ~~~f~~~s~~l~s~L~QIt~iQaeI~q~nlEielLkleK--eTADltH~~~L~---~K~~~Lq~m 98 (277)
T PF15003_consen 39 APCFSEKSSDLFSRLRQITNIQAEIDQLNLEIELLKLEK--ETADLTHPDYLA---EKCEALQSM 98 (277)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc--chHhhhCHHHHH---HHHHHHHHH
Confidence 58998 2355566777788999999999999998874 468999988777 688887754
No 5
>smart00338 BRLZ basic region leucin zipper.
Probab=70.72 E-value=14 Score=21.84 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q psy1224 16 KSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~lK~e 37 (81)
.|..|+.++..|..|+..++..
T Consensus 41 en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 41 ENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555543
No 6
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=70.08 E-value=7.3 Score=24.15 Aligned_cols=39 Identities=36% Similarity=0.442 Sum_probs=29.6
Q ss_pred HHHHHHHHhhHHH-HHH----HHHHHHHHHHhhhhhhcchHHHh
Q psy1224 8 FLRVEYLEKSKHL-QDQ----LRDLRTEIEVLKVGEKQSELDLL 46 (81)
Q Consensus 8 ~~R~ey~eKsk~L-q~Q----Lk~Lk~ELe~lK~eek~t~~D~i 46 (81)
+.|+.++++|-.. |+| |..|-.||+.|+...+.-.++.+
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeee
Confidence 5688888888653 333 89999999999999887655544
No 7
>KOG0114|consensus
Probab=68.10 E-value=0.46 Score=33.29 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhcchhh
Q psy1224 56 NKYSTLRKCIEASILY 71 (81)
Q Consensus 56 dKYkTLr~ir~GnTk~ 71 (81)
-||.|+||||.|||+.
T Consensus 40 Gkyg~IrQIRiG~~k~ 55 (124)
T KOG0114|consen 40 GKYGTIRQIRIGNTKE 55 (124)
T ss_pred hcccceEEEEecCccC
Confidence 3899999999999974
No 8
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.02 E-value=19 Score=27.29 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHH
Q psy1224 3 LPCFLFLRVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVR 52 (81)
Q Consensus 3 ~~~~~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr 52 (81)
||.--.-|--.=.+|..|+++|..+..++..|+.+ ++.+.+.|+.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~E-----v~~L~~DN~k 125 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRRE-----VESLRADNVK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 45544445445566666777776666666666543 5556666665
No 9
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=66.78 E-value=21 Score=21.06 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy1224 17 SKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~l 34 (81)
|..|..++..|+.++..|
T Consensus 42 n~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 42 NEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344443333333
No 10
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=61.68 E-value=26 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=18.6
Q ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHhh
Q psy1224 9 LRVEYL-EKSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 9 ~R~ey~-eKsk~Lq~QLk~Lk~ELe~lK 35 (81)
.|+..+ .+|..|..++..|+.+++.+|
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444 367788888888888887765
No 11
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=61.48 E-value=50 Score=23.24 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh--hhhcchHHHhHHHHHHccchhHHHHHH
Q psy1224 6 FLFLRVEYLEKSKHLQDQLRDLRTEIEVLKV--GEKQSELDLLHEEQVRLGENKYSTLRK 63 (81)
Q Consensus 6 ~~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~--eek~t~~D~iH~eNvr~G~dKYkTLr~ 63 (81)
++..+-....++.+|+.--+..+.+++..-. ..+...+|.=|++-+..=+++|..|.+
T Consensus 84 ~l~~~e~~~~~~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~ 143 (145)
T PF14942_consen 84 RLQQKEQEKQKDDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEK 143 (145)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555556677888877788888877654 344468999999999888999998864
No 12
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=58.73 E-value=30 Score=22.26 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHH
Q psy1224 19 HLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVR 52 (81)
Q Consensus 19 ~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr 52 (81)
.+..++.++.+++..--.......++.||..|--
T Consensus 18 ~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNei 51 (83)
T PF07061_consen 18 QLEKEISELEAELIEDPEKIVKRHIKLLHEYNEI 51 (83)
T ss_pred HHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHH
Confidence 4555555555554222233445689999988853
No 13
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.01 E-value=13 Score=21.79 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q psy1224 16 KSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~lK 35 (81)
+.++++.+++.++.|++.+|
T Consensus 49 ~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45778888888888888764
No 14
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=56.14 E-value=6.8 Score=28.45 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q psy1224 7 LFLRVEYLEKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 7 ~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
|.||..-.+..++|.|.|.+|+.|| .+++
T Consensus 23 LdEKE~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 23 LDEKENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3455556678888889999999888 5544
No 15
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=55.79 E-value=53 Score=21.19 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=22.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHcc
Q psy1224 12 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLG 54 (81)
Q Consensus 12 ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G 54 (81)
+-...-+.||+.|.+|-..++..| ...|.|-.+|--.+
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk-----~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVK-----EENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 333444556666666665555554 45777777776655
No 16
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.96 E-value=37 Score=21.74 Aligned_cols=31 Identities=42% Similarity=0.573 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHHHHHhhh
Q psy1224 6 FLFLRVEYLEKS-KHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 6 ~~~~R~ey~eKs-k~Lq~QLk~Lk~ELe~lK~ 36 (81)
+++.|.++++++ +.|+.++..+..++..++.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666543 5666666666666666543
No 17
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.24 E-value=44 Score=25.11 Aligned_cols=52 Identities=33% Similarity=0.399 Sum_probs=33.3
Q ss_pred HHHHHHHH-----hh---HHHHHHHHHHHHHHHHhhh--hhhcchHHHhHHHHHHccchhHHHHHH
Q psy1224 8 FLRVEYLE-----KS---KHLQDQLRDLRTEIEVLKV--GEKQSELDLLHEEQVRLGENKYSTLRK 63 (81)
Q Consensus 8 ~~R~ey~e-----Ks---k~Lq~QLk~Lk~ELe~lK~--eek~t~~D~iH~eNvr~G~dKYkTLr~ 63 (81)
++|++.+| .+ -.|+.||..|+.||..||- |+-.-.++.+... -+|-|.-|..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r----q~~~y~dld~ 100 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER----QKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 56666554 22 2679999999999999986 3333455555542 3456666654
No 18
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=53.59 E-value=9.2 Score=22.19 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=13.2
Q ss_pred ccchhHHHHHHHHhc
Q psy1224 53 LGENKYSTLRKCIEA 67 (81)
Q Consensus 53 ~G~dKYkTLr~ir~G 67 (81)
.||..|..|++|..|
T Consensus 16 rGRe~yE~l~kine~ 30 (42)
T PF07710_consen 16 RGRERYEMLKKINEA 30 (42)
T ss_dssp ESHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHH
Confidence 599999999999765
No 19
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=53.52 E-value=33 Score=23.77 Aligned_cols=16 Identities=38% Similarity=0.717 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1224 18 KHLQDQLRDLRTEIEV 33 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~ 33 (81)
++++++|++|+++|-.
T Consensus 94 ~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 94 EKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555543
No 20
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=52.59 E-value=28 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhh
Q psy1224 12 EYLEKSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 12 ey~eKsk~Lq~QLk~Lk~ELe~lK~e 37 (81)
+..+.|.+|+..|+.|..||..++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999988766
No 21
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=51.54 E-value=40 Score=21.14 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHcc
Q psy1224 18 KHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLG 54 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G 54 (81)
+.|..++.+|..+|+..+..++...+..|..--...|
T Consensus 1 ~eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~G 37 (93)
T PF00816_consen 1 KELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYG 37 (93)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4688899999999999999998888888877766666
No 22
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=47.42 E-value=32 Score=27.96 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=29.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHH
Q psy1224 12 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTL 61 (81)
Q Consensus 12 ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTL 61 (81)
++++||+.||+-++.|+.|...|-+ .+.++.-|++|.+.
T Consensus 5 ~E~~kskE~~enik~l~~~~~~~~e-----------sea~k~ar~~y~~~ 43 (378)
T TIGR00984 5 DELQKSQELQESIKQLQDRSGKLNE-----------SDALKKARKAYEKA 43 (378)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHH
Confidence 5789999999999999988766533 34556667777774
No 23
>KOG0996|consensus
Probab=47.33 E-value=1.1e+02 Score=29.02 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhh-hhhhcchHHHhHHHHHHccchhHHHHHHHHhcchhhhHhhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLK-VGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEYTQKA 77 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK-~eek~t~~D~iH~eNvr~G~dKYkTLr~ir~GnTk~Ri~q~~ 77 (81)
+.++.|+.+|+.|++.+. -..|.+..+.|++.-...|..+++.-+ -.--...+|+++++
T Consensus 861 ~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk-~kv~~~~~~~~~l~ 920 (1293)
T KOG0996|consen 861 KELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQK-DKVEKINEQLDKLE 920 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhH-HHHHHHHHHHHHHH
Confidence 677889999999999984 222335677777777777777766643 34445566777764
No 24
>PF15082 DUF4549: Domain of unknown function (DUF4549)
Probab=45.73 E-value=35 Score=24.60 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=18.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy1224 9 LRVEYLEKSKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 9 ~R~ey~eKsk~Lq~QLk~Lk~ELe~l 34 (81)
+|+-.+|| .|..||.+|++||+.-
T Consensus 10 erv~~lEk--eLa~~L~eLK~eiEE~ 33 (144)
T PF15082_consen 10 ERVQQLEK--ELAKELYELKNEIEEN 33 (144)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 46666664 6888999999999763
No 25
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=42.37 E-value=97 Score=20.31 Aligned_cols=52 Identities=13% Similarity=0.353 Sum_probs=26.6
Q ss_pred HhhHHHHHHHHHHHHHHHHhhh-hhhcchHHHhHHHHHHccchhHHHHHHHHhc
Q psy1224 15 EKSKHLQDQLRDLRTEIEVLKV-GEKQSELDLLHEEQVRLGENKYSTLRKCIEA 67 (81)
Q Consensus 15 eKsk~Lq~QLk~Lk~ELe~lK~-eek~t~~D~iH~eNvr~G~dKYkTLr~ir~G 67 (81)
.+|..+-.++.+|..+...-+. .+....++.++. ++..-+.+..+++.|-+|
T Consensus 31 ~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~-~lk~~r~~~~v~k~v~q~ 83 (106)
T PF05837_consen 31 RRNQELAQELLELAEKQKSQREDEELSEKLEKLEK-ELKKSRQRWRVMKNVFQA 83 (106)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444444444445444443333 222234444443 455567788888876544
No 26
>KOG2580|consensus
Probab=40.47 E-value=63 Score=27.20 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy1224 6 FLFLRVEYLEKSKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 6 ~~~~R~ey~eKsk~Lq~QLk~Lk~ELe~l 34 (81)
|...=..+|.||+.||+-.+.|+.+-..|
T Consensus 68 f~dn~r~E~~knkElqe~iK~lkd~a~~L 96 (459)
T KOG2580|consen 68 FSDNVRAELDKNKELQESIKKLKDRAGEL 96 (459)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Confidence 44444468999999999999998776665
No 27
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.08 E-value=61 Score=23.38 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=24.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q psy1224 8 FLRVEYLEKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 8 ~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
++|...+++-+.|+.++..|+.||+....
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888889999999999999986544
No 28
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.09 E-value=71 Score=24.22 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHHHHHhhhhhh
Q psy1224 6 FLFLRVEYLEKS-KHLQDQLRDLRTEIEVLKVGEK 39 (81)
Q Consensus 6 ~~~~R~ey~eKs-k~Lq~QLk~Lk~ELe~lK~eek 39 (81)
|...|...+|.. ..++.++..|+.|++.||-++-
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888754 5567789999999999987643
No 29
>PF14282 FlxA: FlxA-like protein
Probab=38.18 E-value=65 Score=21.17 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~ 36 (81)
+.|+.|++.|..+|..+..
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4566666666666665555
No 30
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=37.33 E-value=43 Score=19.66 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchHHHh
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSELDLL 46 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~D~i 46 (81)
...|+++|.+|+.|+-.++-.-...+++.-
T Consensus 8 ~~eL~~~l~~l~~elf~Lr~q~~~~~~~~~ 37 (57)
T cd00427 8 DEELQEKLDELKKELFNLRFQKATGQLENP 37 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcCc
Confidence 367889999999999999866544444433
No 31
>KOG3433|consensus
Probab=35.98 E-value=1.2e+02 Score=23.02 Aligned_cols=43 Identities=23% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHH-HHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHH
Q psy1224 6 FLFLRV-EYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHE 48 (81)
Q Consensus 6 ~~~~R~-ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~ 48 (81)
--|+|. ++.-+.-+|+++|+.|+.|++..+.-+-+...-..|.
T Consensus 113 ~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~ 156 (203)
T KOG3433|consen 113 ETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHL 156 (203)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 345676 4556778888888899988888776665544333343
No 32
>KOG3119|consensus
Probab=35.79 E-value=79 Score=24.03 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHhhhhhh
Q psy1224 9 LRVEYLEK-SKHLQDQLRDLRTEIEVLKVGEK 39 (81)
Q Consensus 9 ~R~ey~eK-sk~Lq~QLk~Lk~ELe~lK~eek 39 (81)
.|+.+++| |..|..+...|+.||..+++-..
T Consensus 222 ~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 222 HRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566654 45555666666666666555433
No 33
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=34.81 E-value=92 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=14.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh
Q psy1224 10 RVEYLEKSKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 10 R~ey~eKsk~Lq~QLk~Lk~ELe~l 34 (81)
..+..+.|+.|++++..|+.++..+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666665543
No 34
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.50 E-value=57 Score=19.11 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~e 37 (81)
.+++.++.+|+++|+.++.+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e 39 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKE 39 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666554
No 35
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.43 E-value=1.2e+02 Score=19.38 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=13.4
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHhh
Q psy1224 7 LFLRVEYLEK-SKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 7 ~~~R~ey~eK-sk~Lq~QLk~Lk~ELe~lK 35 (81)
+++|.++++. -+.+..++..+..++..++
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555532 2344444444444444443
No 36
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=34.14 E-value=13 Score=28.77 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHHHhcchhhhHhhh
Q psy1224 19 HLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEYTQK 76 (81)
Q Consensus 19 ~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~ir~GnTk~Ri~q~ 76 (81)
-||.|+.-|.++|-.++.+ +|.++.-+.. +++|-+..-.|.+.+||-|
T Consensus 62 ~LQrQi~qLt~~lQ~~~~e-----neklk~~~K~-----~kalleSkl~~~kk~Idrl 109 (249)
T PF10422_consen 62 LLQRQITQLTSQLQSQKQE-----NEKLKELQKT-----QKALLESKLSNKKKEIDRL 109 (249)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhh-----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4788888888888776554 5555554433 4456666777777777744
No 37
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=33.81 E-value=37 Score=28.56 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhhh
Q psy1224 23 QLRDLRTEIEVLKVG 37 (81)
Q Consensus 23 QLk~Lk~ELe~lK~e 37 (81)
||.+|+.||+.||.+
T Consensus 32 kie~L~kql~~Lk~q 46 (489)
T PF11853_consen 32 KIEALKKQLEELKAQ 46 (489)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555443
No 38
>KOG4196|consensus
Probab=33.42 E-value=1.1e+02 Score=21.80 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=10.2
Q ss_pred hHHHhHHHHHHcc------chhHHHHHH
Q psy1224 42 ELDLLHEEQVRLG------ENKYSTLRK 63 (81)
Q Consensus 42 ~~D~iH~eNvr~G------~dKYkTLr~ 63 (81)
++|.|+.+|.+.- +.||.-|-.
T Consensus 89 qv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 89 QVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444333 245555544
No 39
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.20 E-value=1.3e+02 Score=19.54 Aligned_cols=30 Identities=37% Similarity=0.370 Sum_probs=18.2
Q ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHHhh
Q psy1224 6 FLFLRVEYLE-KSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 6 ~~~~R~ey~e-Ksk~Lq~QLk~Lk~ELe~lK 35 (81)
.+++|.++++ .-+.|..++..|...+..+.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777664 44566666666666665553
No 40
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.64 E-value=83 Score=19.10 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q psy1224 6 FLFLRVEYLEKSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 6 ~~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~e 37 (81)
-+|.|+..+|+ +|++...++...+.+
T Consensus 29 tiEqRLa~LE~------rL~~ae~ra~~ae~~ 54 (60)
T PF11471_consen 29 TIEQRLAALEQ------RLQAAEQRAQAAEAR 54 (60)
T ss_pred CHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 47888876665 666666666665544
No 41
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=32.25 E-value=57 Score=19.69 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEK 39 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek 39 (81)
...|++.|.+|+.||-.+|....
T Consensus 11 ~~eL~~~l~~lkkeL~~lR~~~~ 33 (66)
T PRK00306 11 VEELNEKLLELKKELFNLRFQKA 33 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999986543
No 42
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=32.20 E-value=49 Score=24.27 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKVGE 38 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~ee 38 (81)
.+|..+|++|+.||+.||..-
T Consensus 2 ~~LE~~~~~l~~e~~~Lk~~p 22 (176)
T PF10737_consen 2 QRLEQRLQELQQELEELKQQP 22 (176)
T ss_pred hHHHHHHHHHHHHHHHHHhCC
Confidence 368889999999999987653
No 43
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.14 E-value=1.3e+02 Score=19.25 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhh
Q psy1224 11 VEYLEKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 11 ~ey~eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
-.|-..+.+++..|.+|.+++..|..
T Consensus 17 ~~~~~~~~~i~~~l~~l~s~~~~l~~ 42 (97)
T COG4842 17 KDYAGSSGEIQALLQDLASEIAKLQS 42 (97)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999876
No 44
>smart00340 HALZ homeobox associated leucin zipper.
Probab=32.09 E-value=51 Score=19.42 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=12.8
Q ss_pred HHhhHHHHHHHHHHHH
Q psy1224 14 LEKSKHLQDQLRDLRT 29 (81)
Q Consensus 14 ~eKsk~Lq~QLk~Lk~ 29 (81)
.+-|++||..|.+|++
T Consensus 18 teeNrRL~ke~~eLra 33 (44)
T smart00340 18 TEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3678999999988863
No 45
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.09 E-value=2.1e+02 Score=21.53 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=36.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHH
Q psy1224 9 LRVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYS 59 (81)
Q Consensus 9 ~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYk 59 (81)
..+.-.||=+++|+..++++.|.+.++...-.-.+-+|-++....-+|-+.
T Consensus 66 ~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~e 116 (201)
T COG1422 66 KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRE 116 (201)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 455567889999999999999999988755455566666665555445444
No 46
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=31.94 E-value=61 Score=18.96 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSEL 43 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~ 43 (81)
...|++.|.+|+.||-.+|..-...+.
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~~ 33 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQL 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 367889999999999998865433333
No 47
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=31.86 E-value=58 Score=20.09 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcch-HHHhH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSE-LDLLH 47 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~-~D~iH 47 (81)
...|.+.|.+|+.|+-.||..-...+ ++..|
T Consensus 14 ~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~ 45 (69)
T PRK14549 14 PEEREEKLEELKLELLKERAQAAMGGAPENPG 45 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCccccH
Confidence 36789999999999999987554444 44443
No 48
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.71 E-value=1.3e+02 Score=25.34 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q psy1224 23 QLRDLRTEIEVL 34 (81)
Q Consensus 23 QLk~Lk~ELe~l 34 (81)
++++++.+++.+
T Consensus 67 ~~k~~r~~~~~l 78 (472)
T TIGR03752 67 EVKELRKRLAKL 78 (472)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 49
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=31.47 E-value=46 Score=19.67 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSEL 43 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~ 43 (81)
...|+++|.+|+.||-.+|-.-...++
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~~~~l 35 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKATGQL 35 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467889999999999988876544333
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.04 E-value=1.1e+02 Score=26.92 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=35.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhh--hhhcchHHHhHHHHHHccch
Q psy1224 12 EYLEKSKHLQDQLRDLRTEIEVLKV--GEKQSELDLLHEEQVRLGEN 56 (81)
Q Consensus 12 ey~eKsk~Lq~QLk~Lk~ELe~lK~--eek~t~~D~iH~eNvr~G~d 56 (81)
+.+.|-..+..++.+|.+||..+|. ...+..+|+|+..|...+.+
T Consensus 24 esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~ 70 (717)
T PF09730_consen 24 ESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKE 70 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888899999999988876 44457899999998887755
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.78 E-value=83 Score=23.22 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=3.0
Q ss_pred HHHhHHHH
Q psy1224 43 LDLLHEEQ 50 (81)
Q Consensus 43 ~D~iH~eN 50 (81)
+|.+-.+|
T Consensus 155 ~~~l~~~~ 162 (206)
T PRK10884 155 VDAANLQL 162 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 52
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=28.82 E-value=66 Score=20.20 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchHHHhH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSELDLLH 47 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH 47 (81)
.+.|.++|.+|+.|+-.+|-....-+++.-|
T Consensus 13 ~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~ 43 (69)
T COG0255 13 VEELEEELRELKKELFNLRFQLATGQLENPH 43 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcH
Confidence 4678899999999999998876554554433
No 53
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=28.75 E-value=1.4e+02 Score=19.89 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=21.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q psy1224 8 FLRVEYLEKSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 8 ~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~e 37 (81)
.++..|..-+..+...+...+.+|+.||.+
T Consensus 74 ~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~ 103 (139)
T PF05615_consen 74 RERENYEQLNEEIEQEIEQAKKEIEELKEE 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777653
No 54
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.21 E-value=1.9e+02 Score=19.34 Aligned_cols=19 Identities=42% Similarity=0.504 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy1224 19 HLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 19 ~Lq~QLk~Lk~ELe~lK~e 37 (81)
.|..||..|-.+|+.||..
T Consensus 12 ~le~~l~~l~~~~~~LK~~ 30 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQ 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666543
No 55
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.15 E-value=1.8e+02 Score=21.28 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHH
Q psy1224 18 KHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKC 64 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~i 64 (81)
+.|+.++..|+.+++.|.. .+..++..+. .=...|.||-.|
T Consensus 107 ~~l~~e~~~l~~~~e~Le~-----e~~~L~~~~~-~~~eDY~~L~~I 147 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEK-----ELEKLRQRLS-TIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444444444444432 2444444332 123679998776
No 56
>KOG4677|consensus
Probab=27.96 E-value=2.3e+02 Score=24.42 Aligned_cols=29 Identities=45% Similarity=0.476 Sum_probs=22.1
Q ss_pred HHHHHHH---HHHhhHHHHHHHHHHHHHHHHh
Q psy1224 6 FLFLRVE---YLEKSKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 6 ~~~~R~e---y~eKsk~Lq~QLk~Lk~ELe~l 34 (81)
|+|-|++ -.|-+.++|.|.-.|+++|..+
T Consensus 311 ~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~ 342 (554)
T KOG4677|consen 311 FEETRVELPFSAEDSAHIQDQYTLLRSQIIDI 342 (554)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666 2467899999999999998754
No 57
>PRK14011 prefoldin subunit alpha; Provisional
Probab=27.84 E-value=1.6e+02 Score=20.62 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=24.4
Q ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhh
Q psy1224 6 FLFLRVEYLEK-SKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 6 ~~~~R~ey~eK-sk~Lq~QLk~Lk~ELe~lK~e 37 (81)
|++.|++++++ .+.|...|.++..+++.+..+
T Consensus 92 ~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 92 DFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888876 467888888888888887643
No 58
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.56 E-value=1.8e+02 Score=21.33 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=16.9
Q ss_pred hhHHHHHHHHhcchhhhHhhhhc
Q psy1224 56 NKYSTLRKCIEASILYEYTQKAH 78 (81)
Q Consensus 56 dKYkTLr~ir~GnTk~Ri~q~~~ 78 (81)
.+.++||+ +.+.-..++|.|..
T Consensus 144 ~~~k~Lrn-Ka~~L~~eL~~F~~ 165 (171)
T PF04799_consen 144 SKSKTLRN-KANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH
Confidence 47788886 77888888888864
No 59
>PF11652 DUF3259: Protein of unknown function (DUF3259); InterPro: IPR024280 This entry describes a eukaryotic protein family of unknown function designated FAM167.
Probab=26.66 E-value=91 Score=20.65 Aligned_cols=21 Identities=48% Similarity=0.594 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~e 37 (81)
..+|..||-.|++||..+|++
T Consensus 5 D~qLArqLmrlR~~i~~lkve 25 (84)
T PF11652_consen 5 DQQLARQLMRLRSEIHRLKVE 25 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999987
No 60
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.99 E-value=2e+02 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=17.5
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHHH
Q psy1224 10 RVEYLE-KSKHLQDQLRDLRTEIE 32 (81)
Q Consensus 10 R~ey~e-Ksk~Lq~QLk~Lk~ELe 32 (81)
.++..+ |...|+.||..|++|++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554 88888888888888887
No 61
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.94 E-value=72 Score=21.88 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=14.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q psy1224 9 LRVEYLEKSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 9 ~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~e 37 (81)
+|.+.-...-.++.+|..|..+|+..|..
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S 31 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTS 31 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445567888888888888887654
No 62
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=25.51 E-value=1.4e+02 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q psy1224 6 FLFLRVEYLEKSKHLQDQLRDL 27 (81)
Q Consensus 6 ~~~~R~ey~eKsk~Lq~QLk~L 27 (81)
++.+.......|+.|..+|.++
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~ 85 (284)
T COG1792 64 FLKSLKDLALENEELKKELAEL 85 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHH
Confidence 3334444444555555555443
No 63
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.16 E-value=2.3e+02 Score=26.17 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHH-HHhcc
Q psy1224 1 MLLPCFLFLRVEYL-----------EKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRK-CIEAS 68 (81)
Q Consensus 1 ~~~~~~~~~R~ey~-----------eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~-ir~Gn 68 (81)
|++||-.++|.+.+ +.-..+..|++.| ..|-+....-.--.-......+|++-.-|.=+ |+.--
T Consensus 224 ML~~~D~~S~~~t~v~~F~DLe~A~e~V~~~K~Qi~~L----~PLV~~~~r~e~~~~S~~~~~A~k~aL~~~~~~iK~E~ 299 (1104)
T COG4913 224 MLVEPDTFSIAKTAVEQFQDLEGAYEQVEDIKRQIHTL----DPLVQLKNRREKAQQSKDHANALKKALPTVGNRIKKEE 299 (1104)
T ss_pred ccCCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHhHHH
Q ss_pred hhhhHhhhh
Q psy1224 69 ILYEYTQKA 77 (81)
Q Consensus 69 Tk~Ri~q~~ 77 (81)
-+.||+||+
T Consensus 300 ~~~~v~~~t 308 (1104)
T COG4913 300 QETLVRQFT 308 (1104)
T ss_pred HHHHHHHHH
No 64
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=25.15 E-value=1.2e+02 Score=21.39 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhh
Q psy1224 13 YLEKSKHLQDQLRDLRTEIEVLKVGEK 39 (81)
Q Consensus 13 y~eKsk~Lq~QLk~Lk~ELe~lK~eek 39 (81)
-+|.|.+|+.|+.-|+..|+.++...+
T Consensus 13 Q~E~N~QLekqi~~l~~kiek~r~n~~ 39 (129)
T PF15372_consen 13 QLELNDQLEKQIIILREKIEKIRGNPS 39 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 568999999999999999999877433
No 65
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=25.04 E-value=1.1e+02 Score=19.84 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=17.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhh
Q psy1224 14 LEKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 14 ~eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
++.|+.|...|..-..||+-+..
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~ 26 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNI 26 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 56789999999988888887643
No 66
>PRK14127 cell division protein GpsB; Provisional
Probab=24.91 E-value=1.9e+02 Score=19.57 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=16.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhh
Q psy1224 13 YLEKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 13 y~eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
+...+..|++++..|+.+|+.++.
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777766654
No 67
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.82 E-value=2.9e+02 Score=20.33 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=29.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHH
Q psy1224 8 FLRVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVR 52 (81)
Q Consensus 8 ~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr 52 (81)
.+-.+...--..+.++-+.|+.|++.++.+. ..++.+-+||.+
T Consensus 62 ~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~--~~~~~l~~en~~ 104 (276)
T PRK13922 62 SGVFESLASLFDLREENEELKKELLELESRL--QELEQLEAENAR 104 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3444555666788888888888888876654 345667777755
No 68
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=24.43 E-value=92 Score=20.31 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchHH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSELD 44 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~D 44 (81)
.+.|++.|.+|+.||-.||..-...+++
T Consensus 10 ~eEL~e~L~elkkELf~LR~q~atgql~ 37 (87)
T PRK00461 10 VEELEKLVIELKAELFTLRFKNATGSLD 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4678899999999999988654333333
No 69
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=24.28 E-value=84 Score=20.83 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~ 36 (81)
-.|+.||..++.||..++.
T Consensus 81 ~~L~~ql~~~~~el~~~~~ 99 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4688899999999888754
No 70
>PRK09343 prefoldin subunit beta; Provisional
Probab=23.95 E-value=2e+02 Score=19.17 Aligned_cols=8 Identities=50% Similarity=0.355 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q psy1224 7 LFLRVEYL 14 (81)
Q Consensus 7 ~~~R~ey~ 14 (81)
+++|.++.
T Consensus 76 l~~r~E~i 83 (121)
T PRK09343 76 LKERKELL 83 (121)
T ss_pred HHHHHHHH
Confidence 34444444
No 71
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=23.42 E-value=1.6e+02 Score=19.91 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=22.0
Q ss_pred HHHHHH-HHHhhHHHHHHHHHHHHHHHHhh
Q psy1224 7 LFLRVE-YLEKSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 7 ~~~R~e-y~eKsk~Lq~QLk~Lk~ELe~lK 35 (81)
-|+||+ |.-||-.|..+=.++...|..++
T Consensus 65 YEdRVDDyiIknAElsKeRReis~k~k~~k 94 (95)
T PF04363_consen 65 YEDRVDDYIIKNAELSKERREISKKIKELK 94 (95)
T ss_pred HHHhHHHHHHhhHHHhHHHHHHHHHHHHhc
Confidence 467876 77888888888888887776653
No 72
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=23.40 E-value=1.7e+02 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=20.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy1224 8 FLRVEYLEKSKHLQDQLRDLRTEIEV 33 (81)
Q Consensus 8 ~~R~ey~eKsk~Lq~QLk~Lk~ELe~ 33 (81)
++..+..++-..|+++++.|+.+|..
T Consensus 242 ~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 242 EEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666667778899999999988875
No 73
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.21 E-value=1.1e+02 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=12.6
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q psy1224 8 FLRVEYLEKSKHLQDQLRDL 27 (81)
Q Consensus 8 ~~R~ey~eKsk~Lq~QLk~L 27 (81)
-||-.|-.|-.+|..+|+-+
T Consensus 161 ~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 161 TERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666766666666544
No 74
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=22.97 E-value=1.4e+02 Score=20.13 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhh-HHHHHHHHHHHH
Q psy1224 6 FLFLRVEYLEKS-KHLQDQLRDLRT 29 (81)
Q Consensus 6 ~~~~R~ey~eKs-k~Lq~QLk~Lk~ 29 (81)
++.-|++|..+| ..|+.||..--.
T Consensus 72 ~l~RRiDYV~~Ni~tleKql~~aE~ 96 (99)
T PF13758_consen 72 VLSRRIDYVQQNIETLEKQLEAAEN 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456699999887 567777765543
No 75
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.93 E-value=2.4e+02 Score=18.70 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=16.2
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHhhh
Q psy1224 7 LFLRVEYLE-KSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 7 ~~~R~ey~e-Ksk~Lq~QLk~Lk~ELe~lK~ 36 (81)
+.+..++++ +-+.|..++..|..+|..++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~ 122 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLAS 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 335556666666666655543
No 76
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.67 E-value=82 Score=26.56 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=21.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhh
Q psy1224 10 RVEYLEKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 10 R~ey~eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
.++.++|=+.|+.||.+|+.+++.+.+
T Consensus 26 ~~~~~qkie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 26 DIDLLQKIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccccc
Confidence 455566788999999999999887554
No 77
>KOG4571|consensus
Probab=22.61 E-value=98 Score=24.63 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q psy1224 16 KSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~lK~ 36 (81)
+|+.|.+|+.+|-.||.-||+
T Consensus 263 rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 263 RNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888777765
No 78
>KOG4253|consensus
Probab=22.57 E-value=2.5e+02 Score=20.80 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=18.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHh
Q psy1224 12 EYLEKSKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 12 ey~eKsk~Lq~QLk~Lk~ELe~l 34 (81)
..++|+.+.-.++.++|.|+.+.
T Consensus 41 kdakk~~q~~~ei~dmKqelnav 63 (175)
T KOG4253|consen 41 KDAKKESQKVAEIQDMKQELNAV 63 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhh
Confidence 35678888888999999998764
No 79
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=22.51 E-value=1.8e+02 Score=20.76 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=22.6
Q ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHhhhh
Q psy1224 9 LRVEYLEKSKH-LQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 9 ~R~ey~eKsk~-Lq~QLk~Lk~ELe~lK~e 37 (81)
+|..|.-.||+ ||+.|++|..|+..=|.+
T Consensus 71 ~RAkY~lENky~L~~tL~~LtkEVn~Wr~e 100 (132)
T PF09432_consen 71 ERAKYSLENKYSLQDTLNQLTKEVNYWRKE 100 (132)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 57788766765 799999999998776653
No 80
>PTZ00269 variant surface glycoprotein; Provisional
Probab=22.30 E-value=1.6e+02 Score=24.54 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q psy1224 7 LFLRVEYLEKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 7 ~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
++.|..+..+-+.|..+|+.|+.+++.+--
T Consensus 337 L~~~eqA~~~~~~l~~qLk~L~~eaeaL~~ 366 (472)
T PTZ00269 337 MEVLLQDKQDKSAKLERIKELSQEIESLIK 366 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777889999999999999998753
No 81
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.30 E-value=1.1e+02 Score=18.87 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy1224 20 LQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 20 Lq~QLk~Lk~ELe~lK~ 36 (81)
|.+|+..|+.+|+.++.
T Consensus 70 l~~~~~~l~~~l~~l~~ 86 (91)
T cd04766 70 LEEELAELRAELDELRA 86 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777766654
No 82
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=22.02 E-value=3.7e+02 Score=20.63 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=13.3
Q ss_pred HHHccchhHHHHHHH--------HhcchhhhH
Q psy1224 50 QVRLGENKYSTLRKC--------IEASILYEY 73 (81)
Q Consensus 50 Nvr~G~dKYkTLr~i--------r~GnTk~Ri 73 (81)
|.-.|.-| +|.+. .+|+++.|+
T Consensus 114 nQV~GniK--lLd~lIe~G~~E~KSte~M~rL 143 (228)
T PF06721_consen 114 NQVKGNIK--LLDNLIENGEMEMKSTERMCRL 143 (228)
T ss_pred HHhhchHH--HHHHHhhcCceeecccchHHHH
Confidence 66677655 77763 555555654
No 83
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.00 E-value=2.3e+02 Score=23.55 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcch
Q psy1224 16 KSKHLQDQLRDLRTEIEVLKVGEKQSE 42 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~lK~eek~t~ 42 (81)
+...|+.+|+.+.+||.++...=+++.
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888776655554
No 84
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.95 E-value=2.6e+02 Score=18.88 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHHHHHHhh-HHHHHHHHHHHHHHHHh
Q psy1224 7 LFLRVEYLEKS-KHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 7 ~~~R~ey~eKs-k~Lq~QLk~Lk~ELe~l 34 (81)
+++++..+|.+ ..+..++.+|+..+..+
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555432 33344444444444333
No 85
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.69 E-value=2.1e+02 Score=18.75 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~ 36 (81)
..|+.+-..|+.||+.|++
T Consensus 44 ~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3344444444444444433
No 86
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.88 E-value=2.5e+02 Score=18.21 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHh
Q psy1224 20 LQDQLRDLRTEIEVL 34 (81)
Q Consensus 20 Lq~QLk~Lk~ELe~l 34 (81)
|++++..|..+|..+
T Consensus 99 l~~~~~~l~~~l~~l 113 (129)
T cd00584 99 LTKQIEKLQKELAKL 113 (129)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 87
>KOG4807|consensus
Probab=20.80 E-value=99 Score=26.37 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHH
Q psy1224 23 QLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLR 62 (81)
Q Consensus 23 QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr 62 (81)
.|+-|+.||.+|||+=....-|.-+. .|||+.+.
T Consensus 520 EiQYLKqEissLkDELQtalrDKkya------SdKYkDiY 553 (593)
T KOG4807|consen 520 EIQYLKQEISSLKDELQTALRDKKYA------SDKYKDIY 553 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc------ccchhHHH
Confidence 57789999999999977766776654 35666543
No 88
>PF15444 TMEM247: Transmembrane protein 247
Probab=20.59 E-value=1.5e+02 Score=22.61 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHHHhcchhhhH
Q psy1224 29 TEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEY 73 (81)
Q Consensus 29 ~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~ir~GnTk~Ri 73 (81)
.|||-+|.+=--|.+--+|+||.|+--+--.+ -++++..+-+|+
T Consensus 104 mELEKvRMEFELTrLKyLHeENERQRQHEevM-eQLqqQa~prr~ 147 (218)
T PF15444_consen 104 MELEKVRMEFELTRLKYLHEENERQRQHEEVM-EQLQQQAAPRRL 147 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHhhhchhhh
Confidence 45666666655688889999999977544433 445566666554
Done!