Query psy1224
Match_columns 81
No_of_seqs 96 out of 98
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:22:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ef1_C Moesin; membrane, FERM 100.0 1.3E-35 4.5E-40 195.0 5.6 74 4-77 15-88 (90)
2 2i1j_A Moesin; FERM, coiled-co 100.0 2.8E-32 9.5E-37 219.2 5.6 73 5-77 501-573 (575)
3 3m91_A Proteasome-associated A 79.2 3.3 0.00011 23.9 4.1 36 2-37 2-45 (51)
4 1t2k_D Cyclic-AMP-dependent tr 78.6 4.2 0.00014 23.4 4.4 28 8-35 28-56 (61)
5 1jnm_A Proto-oncogene C-JUN; B 75.5 4.4 0.00015 23.4 3.9 28 8-35 28-56 (62)
6 1gu4_A CAAT/enhancer binding p 75.2 5.2 0.00018 24.7 4.4 30 7-36 41-71 (78)
7 1hjb_A Ccaat/enhancer binding 75.0 5.2 0.00018 25.3 4.4 30 7-36 41-71 (87)
8 3viq_B Mating-type switching p 74.7 4.7 0.00016 25.6 4.2 37 16-52 9-53 (85)
9 2xdj_A Uncharacterized protein 71.8 9.2 0.00032 23.8 5.0 53 7-63 4-66 (83)
10 1ci6_A Transcription factor AT 70.7 10 0.00034 22.1 4.8 20 16-35 38-57 (63)
11 2wt7_A Proto-oncogene protein 65.7 13 0.00043 21.6 4.4 19 16-34 38-56 (63)
12 3v86_A De novo design helix; c 65.0 7.4 0.00025 19.9 2.9 21 19-39 4-24 (27)
13 2zxx_A Geminin; coiled-coil, c 59.7 13 0.00044 23.3 3.9 29 12-40 31-59 (79)
14 1aie_A P53; oligomer, DNA; 1.5 57.6 4.9 0.00017 21.3 1.4 15 53-67 8-22 (31)
15 3ra3_A P1C; coiled coil domain 55.1 14 0.00048 18.9 2.9 20 16-35 8-27 (28)
16 3cve_A Homer protein homolog 1 52.1 30 0.001 21.2 4.6 30 8-37 6-36 (72)
17 3s9g_A Protein hexim1; cyclin 51.6 48 0.0017 21.8 5.8 40 7-51 42-89 (104)
18 1wlq_A Geminin; coiled-coil; 2 51.2 20 0.00067 22.7 3.7 29 12-40 35-63 (83)
19 2wg5_A General control protein 50.8 13 0.00046 23.6 3.0 20 18-37 10-29 (109)
20 1uii_A Geminin; human, DNA rep 50.4 21 0.0007 22.6 3.7 28 13-40 44-71 (83)
21 3zy0_A Tumor protein P63; tran 46.4 9.3 0.00032 20.3 1.4 15 53-67 11-25 (32)
22 3iz5_c 60S ribosomal protein L 45.8 24 0.00083 23.5 3.7 32 17-48 16-47 (124)
23 3c3g_A Alpha/beta peptide with 45.3 35 0.0012 18.2 3.7 23 7-29 5-28 (33)
24 4dzn_A Coiled-coil peptide CC- 44.4 21 0.00073 18.8 2.6 16 21-36 8-23 (33)
25 1r73_A TM1492, 50S ribosomal p 44.3 15 0.00051 21.7 2.3 29 18-46 12-40 (66)
26 3ra3_B P2F; coiled coil domain 43.9 30 0.001 17.7 3.1 20 15-34 7-26 (28)
27 4a17_U RPL35, 60S ribosomal pr 43.7 27 0.00092 23.3 3.7 32 17-48 15-47 (124)
28 1hlo_A Protein (transcription 43.4 18 0.00063 21.5 2.6 20 18-37 60-79 (80)
29 3ljc_A ATP-dependent protease 43.3 31 0.0011 24.0 4.1 27 6-32 223-249 (252)
30 1gd2_E Transcription factor PA 43.0 25 0.00087 21.2 3.2 14 19-32 33-46 (70)
31 3m9b_A Proteasome-associated A 42.9 17 0.00059 27.0 2.9 24 15-38 68-91 (251)
32 3cvf_A Homer-3, homer protein 42.9 54 0.0019 20.3 4.8 28 9-36 13-41 (79)
33 3r8s_Y 50S ribosomal protein L 41.8 13 0.00045 21.8 1.7 27 17-43 11-37 (63)
34 3v2d_2 50S ribosomal protein L 41.7 15 0.00052 22.1 2.0 28 17-44 18-45 (72)
35 3j21_W 50S ribosomal protein L 41.4 23 0.0008 21.2 2.9 31 17-47 11-42 (72)
36 3qh9_A Liprin-beta-2; coiled-c 41.1 65 0.0022 20.2 5.6 43 8-51 32-78 (81)
37 2bni_A General control protein 40.2 44 0.0015 18.0 3.7 23 7-29 6-29 (34)
38 1vq8_V 50S ribosomal protein L 40.1 25 0.00087 21.0 2.9 23 17-39 14-36 (71)
39 1t3j_A Mitofusin 1; coiled coi 38.2 77 0.0026 20.3 5.1 22 56-78 71-92 (96)
40 2aze_B Transcription factor E2 37.7 18 0.00062 23.2 2.0 22 19-40 3-24 (106)
41 3s4r_A Vimentin; alpha-helix, 37.3 73 0.0025 19.7 5.9 32 6-37 13-45 (93)
42 1uo4_A General control protein 37.2 50 0.0017 17.7 3.7 23 7-29 6-29 (34)
43 1t6f_A Geminin; coiled-coil, c 36.5 53 0.0018 17.9 3.7 28 13-40 5-32 (37)
44 2zjr_V 50S ribosomal protein L 35.8 18 0.00063 21.3 1.7 28 18-45 12-39 (67)
45 1olg_A Tumor suppressor P53 (o 34.9 17 0.00059 20.3 1.4 15 53-67 15-29 (42)
46 2wqi_A Tumor protein P73; tumo 34.0 18 0.00061 21.0 1.4 15 53-67 12-26 (51)
47 1wt6_A Myotonin-protein kinase 33.9 48 0.0016 20.8 3.5 25 13-37 50-74 (81)
48 4fz4_A 0197-18KD, uncharacteri 33.8 21 0.00073 24.9 2.0 51 14-64 3-59 (154)
49 2l5g_A GPS2 protein, G protein 33.6 53 0.0018 18.0 3.2 23 18-40 11-33 (38)
50 1kd8_B GABH BLL, GCN4 acid bas 33.4 60 0.0021 17.6 4.4 27 7-33 6-33 (36)
51 1kil_E Complexin I snare-compl 33.0 14 0.00048 21.4 0.8 12 48-59 36-48 (49)
52 3zy1_A Tumor protein 63; trans 32.2 20 0.00069 20.4 1.4 15 53-67 11-25 (46)
53 2pnv_A Small conductance calci 30.4 50 0.0017 18.3 2.9 15 18-32 19-33 (43)
54 3u5e_h 60S ribosomal protein L 30.3 41 0.0014 22.3 2.9 27 17-43 14-40 (120)
55 2zvf_A Alanyl-tRNA synthetase; 30.3 50 0.0017 21.4 3.3 19 18-36 35-53 (171)
56 1fxk_A Prefoldin; archaeal pro 30.1 91 0.0031 18.6 4.6 30 7-36 70-100 (107)
57 3jyw_X 60S ribosomal protein L 29.7 21 0.00072 22.4 1.3 27 17-43 13-39 (86)
58 2zqm_A Prefoldin beta subunit 29.6 96 0.0033 18.7 4.7 30 7-36 75-105 (117)
59 2wvr_A Geminin; DNA replicatio 29.1 58 0.002 23.7 3.7 29 12-40 112-140 (209)
60 1nkp_B MAX protein, MYC proto- 27.8 54 0.0018 19.4 2.9 20 18-37 50-69 (83)
61 2zkr_v 60S ribosomal protein L 27.6 48 0.0016 22.0 2.9 23 17-39 14-36 (123)
62 1am9_A Srebp-1A, protein (ster 27.3 56 0.0019 19.5 2.9 21 18-38 53-73 (82)
63 3qh6_A CT296; iron, modeling; 26.9 22 0.00074 24.9 1.1 49 19-78 34-82 (157)
64 2zdi_C Prefoldin subunit alpha 26.8 1E+02 0.0035 19.9 4.4 27 6-32 102-129 (151)
65 3trt_A Vimentin; cytoskeleton, 26.7 52 0.0018 19.1 2.6 12 24-35 51-62 (77)
66 1fxk_C Protein (prefoldin); ar 26.3 1.2E+02 0.0042 18.9 4.7 28 6-33 92-120 (133)
67 4a9z_A Tumor protein 63; trans 25.9 29 0.00099 20.8 1.4 15 53-67 12-26 (61)
68 3bbo_Z Ribosomal protein L29; 25.9 25 0.00086 24.9 1.3 31 17-47 75-105 (173)
69 1gk7_A Vimentin; intermediate 23.7 93 0.0032 16.6 3.9 27 7-33 11-38 (39)
70 2oxj_A Hybrid alpha/beta pepti 23.7 94 0.0032 16.6 3.7 22 7-28 6-28 (34)
71 3kin_B Kinesin heavy chain; mo 22.6 1.5E+02 0.0052 18.8 4.5 22 14-35 95-116 (117)
72 1kd8_A GABH AIV, GCN4 acid bas 22.1 1.1E+02 0.0036 16.6 4.3 27 7-33 6-33 (36)
73 3h6p_C ESAT-6-like protein ESX 22.0 88 0.003 18.2 3.1 22 15-36 20-41 (96)
74 2v4h_A NF-kappa-B essential mo 21.2 1E+02 0.0035 20.3 3.4 22 13-34 88-109 (110)
75 3rk3_E Complexin-1; snare prot 21.2 31 0.001 20.8 0.8 15 48-62 39-54 (63)
76 2er8_A Regulatory protein Leu3 20.8 62 0.0021 18.0 2.1 19 17-35 51-69 (72)
77 3m48_A General control protein 20.8 1.1E+02 0.0037 16.3 3.7 22 7-28 5-27 (33)
78 1zme_C Proline utilization tra 20.7 91 0.0031 17.0 2.8 19 18-36 47-65 (70)
79 1l4a_E Synaphin A; snare, snar 20.4 32 0.0011 21.6 0.8 15 47-61 42-57 (79)
80 2wt7_B Transcription factor MA 20.1 1.7E+02 0.0059 18.3 4.7 9 26-34 59-67 (90)
No 1
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=100.00 E-value=1.3e-35 Score=195.01 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHHHhcchhhhHhhhh
Q psy1224 4 PCFLFLRVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEYTQKA 77 (81)
Q Consensus 4 ~~~~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~ir~GnTk~Ri~q~~ 77 (81)
+...++|++|++||++||+||++|++||+++|+++|+|++|+||++|+++|+|||+|||+||+||||+||++|-
T Consensus 15 ~~~E~eR~~~~eKsk~lq~QL~~Lk~ELe~lk~~~k~t~~D~lh~eN~~~G~dKykTLr~ir~GnTk~Ri~~FE 88 (90)
T 1ef1_C 15 DRSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDMIHAENMRLGRDKYKTLRQIRQGNTKQRIDEFE 88 (90)
T ss_dssp TTGGGGCCCHHHHCHHHHHHHHHHHHHHHTTBCTTCCCHHHHHHHHHHHTTCCHHHHHHHHTCSCHHHHHHHHH
T ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHhcchhHHHHHHHHHccCHHHHHHHhh
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999994
No 2
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=99.97 E-value=2.8e-32 Score=219.18 Aligned_cols=73 Identities=26% Similarity=0.342 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHHHhcchhhhHhhhh
Q psy1224 5 CFLFLRVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEYTQKA 77 (81)
Q Consensus 5 ~~~~~R~ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~ir~GnTk~Ri~q~~ 77 (81)
.++++|++|++||++||+||++|++||+++||++|+|++|+||++||++|+|||+|||+||+||||+|||+|-
T Consensus 501 ~~~~eR~~~~ekn~~lq~qL~~L~~el~~~r~~~k~t~~D~lh~en~~~GrdKykTLr~ir~Gntk~Rid~FE 573 (575)
T 2i1j_A 501 DPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLREIRKGNTKRRVDQFE 573 (575)
T ss_dssp CGGGGCCCHHHHCHHHHHHHHHHHHHHHTTBCGGGCCHHHHHHHHHHHTTCCHHHHHHHHTCSCHHHHHHHHH
T ss_pred cchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCchHHHHHHHHhcCCchHHHHhhc
Confidence 3448999999999999999999999999999999999999999999999999999999999999999999993
No 3
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=79.21 E-value=3.3 Score=23.94 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=23.1
Q ss_pred CcchHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHhhhh
Q psy1224 2 LLPCFLFLRVEY--------LEKSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 2 ~~~~~~~~R~ey--------~eKsk~Lq~QLk~Lk~ELe~lK~e 37 (81)
|.|.+.++|... ..+|..|-+-|+.-+.+|..|+.+
T Consensus 2 ~~~~~~~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 2 HAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777666443 368888888888888888888643
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.58 E-value=4.2 Score=23.39 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=16.5
Q ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHHhh
Q psy1224 8 FLRVEYL-EKSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 8 ~~R~ey~-eKsk~Lq~QLk~Lk~ELe~lK 35 (81)
+.+++.+ ..|..|+.++..|+.|+..|+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 356666666666666666664
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.54 E-value=4.4 Score=23.42 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=16.1
Q ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHHhh
Q psy1224 8 FLRVEYL-EKSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 8 ~~R~ey~-eKsk~Lq~QLk~Lk~ELe~lK 35 (81)
+.+++.+ ..|..|..++..|+.|+..|+
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 255666666666666666654
No 6
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.24 E-value=5.2 Score=24.73 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=22.9
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHhhh
Q psy1224 7 LFLRVEYLE-KSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 7 ~~~R~ey~e-Ksk~Lq~QLk~Lk~ELe~lK~ 36 (81)
++.|+++++ .|..|..++..|+.|+..||.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667664 688888888889888888764
No 7
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=74.97 E-value=5.2 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=22.4
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHhhh
Q psy1224 7 LFLRVEYLE-KSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 7 ~~~R~ey~e-Ksk~Lq~QLk~Lk~ELe~lK~ 36 (81)
++.|++.++ .|..|..++..|+.|+..|+.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666664 678888888888888888765
No 8
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=74.67 E-value=4.7 Score=25.64 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh------h--hcchHHHhHHHHHH
Q psy1224 16 KSKHLQDQLRDLRTEIEVLKVG------E--KQSELDLLHEEQVR 52 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~lK~e------e--k~t~~D~iH~eNvr 52 (81)
+-+.|+.+...|..+|+.++.+ + -+..++.||..|--
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNei 53 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEI 53 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHH
Confidence 3456777777788877776532 2 24689999998854
No 9
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=71.83 E-value=9.2 Score=23.80 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=33.8
Q ss_pred HHHHHHHHHh--------hHHHHHHHHHHHHHHHHhhhhhhcc--hHHHhHHHHHHccchhHHHHHH
Q psy1224 7 LFLRVEYLEK--------SKHLQDQLRDLRTEIEVLKVGEKQS--ELDLLHEEQVRLGENKYSTLRK 63 (81)
Q Consensus 7 ~~~R~ey~eK--------sk~Lq~QLk~Lk~ELe~lK~eek~t--~~D~iH~eNvr~G~dKYkTLr~ 63 (81)
+++|++-+|. .-.|+.||..|+.||..||-.--+. .+..+ ...-+|-|.-|..
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql----~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV----VERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4567776664 2568899999999999998643332 23322 2333577777754
No 10
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=70.70 E-value=10 Score=22.12 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q psy1224 16 KSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~lK 35 (81)
.|..|..++..|+.|+..||
T Consensus 38 ~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 38 KNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666665554
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.68 E-value=13 Score=21.56 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q psy1224 16 KSKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~l 34 (81)
.|..|+.++..|+.|+..|
T Consensus 38 ~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 38 EKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444
No 12
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=64.99 E-value=7.4 Score=19.85 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q psy1224 19 HLQDQLRDLRTEIEVLKVGEK 39 (81)
Q Consensus 19 ~Lq~QLk~Lk~ELe~lK~eek 39 (81)
+|.+...+|+-|..++||+-|
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 567788899999999998865
No 13
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=59.65 E-value=13 Score=23.31 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=24.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q psy1224 12 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 40 (81)
Q Consensus 12 ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~ 40 (81)
+.++-|++|..++..++.||..||.+++.
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~ 59 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRKENKD 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999888764
No 14
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=57.57 E-value=4.9 Score=21.31 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.2
Q ss_pred ccchhHHHHHHHHhc
Q psy1224 53 LGENKYSTLRKCIEA 67 (81)
Q Consensus 53 ~G~dKYkTLr~ir~G 67 (81)
.||..|..|++|+.|
T Consensus 8 rGRe~yEml~ki~d~ 22 (31)
T 1aie_A 8 RGRERFEMFRELNEA 22 (31)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 699999999999865
No 15
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.05 E-value=14 Score=18.94 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q psy1224 16 KSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 16 Ksk~Lq~QLk~Lk~ELe~lK 35 (81)
-|..|.+.+..|+..|+++|
T Consensus 8 endaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 35678888999999999986
No 16
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.13 E-value=30 Score=21.18 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=23.2
Q ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHHhhhh
Q psy1224 8 FLRVEYL-EKSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 8 ~~R~ey~-eKsk~Lq~QLk~Lk~ELe~lK~e 37 (81)
..|+..+ .+|..|+.++..|...|+..+.+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555 37899999999999999988743
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.65 E-value=48 Score=21.75 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=22.1
Q ss_pred HHHHHHHHH-hhHHHHH-------HHHHHHHHHHHhhhhhhcchHHHhHHHHH
Q psy1224 7 LFLRVEYLE-KSKHLQD-------QLRDLRTEIEVLKVGEKQSELDLLHEEQV 51 (81)
Q Consensus 7 ~~~R~ey~e-Ksk~Lq~-------QLk~Lk~ELe~lK~eek~t~~D~iH~eNv 51 (81)
++.|++.++ -+.+|+. ++.+|..||+.|+.+ +..|..+|.
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E-----Nq~L~~e~~ 89 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE-----NLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 455666663 4555655 556666666666544 344455544
No 18
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=51.19 E-value=20 Score=22.74 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=24.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q psy1224 12 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 40 (81)
Q Consensus 12 ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~ 40 (81)
+.++-|+.|.+++..+..||..+|-+.+.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999887654
No 19
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=50.82 E-value=13 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~e 37 (81)
++|+.++++|+.++..++.+
T Consensus 10 ~~l~~~~~~l~~~i~~lkee 29 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENE 29 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777666654
No 20
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=50.39 E-value=21 Score=22.63 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q psy1224 13 YLEKSKHLQDQLRDLRTEIEVLKVGEKQ 40 (81)
Q Consensus 13 y~eKsk~Lq~QLk~Lk~ELe~lK~eek~ 40 (81)
.++-|+.|.+++..|..||..+|-+...
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999876543
No 21
>3zy0_A Tumor protein P63; transcription, transcription factor, tetramerization domain, cycle control; HET: MSE; 1.90A {Homo sapiens}
Probab=46.37 E-value=9.3 Score=20.30 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.9
Q ss_pred ccchhHHHHHHHHhc
Q psy1224 53 LGENKYSTLRKCIEA 67 (81)
Q Consensus 53 ~G~dKYkTLr~ir~G 67 (81)
.||..|..|++|+.+
T Consensus 11 rGRe~ye~l~ki~e~ 25 (32)
T 3zy0_A 11 RGRETYEMLLKIKES 25 (32)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHH
Confidence 599999999998754
No 22
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=45.76 E-value=24 Score=23.55 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchHHHhHH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSELDLLHE 48 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~ 48 (81)
.+.|.++|.+|+.||-.|+..-.-.+++..|.
T Consensus 16 ~eEL~~~L~eLK~ELf~LRfq~atgqlen~~r 47 (124)
T 3iz5_c 16 KDDLTKQLAELKTELGQLRIQKVASSGSKLNR 47 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccchHH
Confidence 46799999999999999998765555555443
No 23
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=45.31 E-value=35 Score=18.25 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=16.1
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHHH
Q psy1224 7 LFLRVEYL-EKSKHLQDQLRDLRT 29 (81)
Q Consensus 7 ~~~R~ey~-eKsk~Lq~QLk~Lk~ 29 (81)
+|++++.+ .++..|+++..-|+.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67777754 677778877766654
No 24
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.37 E-value=21 Score=18.83 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhh
Q psy1224 21 QDQLRDLRTEIEVLKV 36 (81)
Q Consensus 21 q~QLk~Lk~ELe~lK~ 36 (81)
.+.+..|+.||+.+|-
T Consensus 8 kqeiaalkkeiaalkf 23 (33)
T 4dzn_A 8 KQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555443
No 25
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=44.32 E-value=15 Score=21.68 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchHHHh
Q psy1224 18 KHLQDQLRDLRTEIEVLKVGEKQSELDLL 46 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~eek~t~~D~i 46 (81)
..|.++|.+|+.|+-.||..-.-.+++..
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql~n~ 40 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLAMGQLKNT 40 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCccCc
Confidence 77999999999999999875443334333
No 26
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.93 E-value=30 Score=17.66 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=15.1
Q ss_pred HhhHHHHHHHHHHHHHHHHh
Q psy1224 15 EKSKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 15 eKsk~Lq~QLk~Lk~ELe~l 34 (81)
.||-+|.+.+..|.-||+.+
T Consensus 7 qknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 57777888888887777765
No 27
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=43.74 E-value=27 Score=23.31 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcc-hHHHhHH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQS-ELDLLHE 48 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t-~~D~iH~ 48 (81)
.+.|.++|.+|+.||-.|+..-... +++..|.
T Consensus 15 ~eEL~~~L~eLK~ELf~LRfq~atggqlen~~r 47 (124)
T 4a17_U 15 EEQLVGELGKLQTELSQLRIAKIAGGTANKLGR 47 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHH
Confidence 4679999999999999999876554 5555443
No 28
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.45 E-value=18 Score=21.48 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~e 37 (81)
+.|+.++..|..+++.|+.+
T Consensus 60 ~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 60 QYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 57888888888888888754
No 29
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=43.28 E-value=31 Score=24.03 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy1224 6 FLFLRVEYLEKSKHLQDQLRDLRTEIE 32 (81)
Q Consensus 6 ~~~~R~ey~eKsk~Lq~QLk~Lk~ELe 32 (81)
.+.++++...|.=-|++||+.++.||-
T Consensus 223 ~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 223 RVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566666666678999999999885
No 30
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.03 E-value=25 Score=21.16 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy1224 19 HLQDQLRDLRTEIE 32 (81)
Q Consensus 19 ~Lq~QLk~Lk~ELe 32 (81)
.|+.++.+|..+.+
T Consensus 33 ~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 33 ALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 31
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=42.93 E-value=17 Score=27.02 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.2
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhh
Q psy1224 15 EKSKHLQDQLRDLRTEIEVLKVGE 38 (81)
Q Consensus 15 eKsk~Lq~QLk~Lk~ELe~lK~ee 38 (81)
.+|+.|.+.|++++.||..||.+-
T Consensus 68 arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 68 ARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999998888764
No 32
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.91 E-value=54 Score=20.27 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=22.2
Q ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHhhh
Q psy1224 9 LRVEYL-EKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 9 ~R~ey~-eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
.|+..+ .+|..|+.++..|...|+..+.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345444 3889999999999999998874
No 33
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=41.80 E-value=13 Score=21.76 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSEL 43 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~ 43 (81)
...|.++|.+|+.|+-.||..-...++
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~atgql 37 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAASGQL 37 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 367999999999999999886443333
No 34
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=41.66 E-value=15 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchHH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSELD 44 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~D 44 (81)
...|.++|.+|+.|+-.||..-.-.+++
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~atgql~ 45 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQASIGQLS 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4789999999999999998875444443
No 35
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.45 E-value=23 Score=21.23 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcch-HHHhH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSE-LDLLH 47 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~-~D~iH 47 (81)
...|.++|.+|+.||-.||..-.-.+ ++..|
T Consensus 11 ~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~ 42 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERGLLTMGTSLENPM 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcH
Confidence 46799999999999999988755444 44443
No 36
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.10 E-value=65 Score=20.23 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=30.1
Q ss_pred HHHHHHHHhhHHH--HHHHHHHHHHHHHhhh--hhhcchHHHhHHHHH
Q psy1224 8 FLRVEYLEKSKHL--QDQLRDLRTEIEVLKV--GEKQSELDLLHEEQV 51 (81)
Q Consensus 8 ~~R~ey~eKsk~L--q~QLk~Lk~ELe~lK~--eek~t~~D~iH~eNv 51 (81)
..||+.||- +++ ..+|+.-+.||.+|+. +.|...+-.+|.+-+
T Consensus 32 r~kv~elEn-ErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 32 KIKVEELEN-ERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 447777763 333 4568888889988875 677777877877644
No 37
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=40.21 E-value=44 Score=17.95 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=15.5
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHHH
Q psy1224 7 LFLRVEYL-EKSKHLQDQLRDLRT 29 (81)
Q Consensus 7 ~~~R~ey~-eKsk~Lq~QLk~Lk~ 29 (81)
+|++++.+ .++.+|+++..-|+.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 57777754 677777777666653
No 38
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=40.13 E-value=25 Score=20.97 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEK 39 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek 39 (81)
...|.++|.+|+.||-.||..-.
T Consensus 14 ~~EL~~~l~elk~ELf~LR~q~a 36 (71)
T 1vq8_V 14 PAEREAELDDLKTELLNARAVQA 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999987643
No 39
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.24 E-value=77 Score=20.31 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=16.2
Q ss_pred hhHHHHHHHHhcchhhhHhhhhc
Q psy1224 56 NKYSTLRKCIEASILYEYTQKAH 78 (81)
Q Consensus 56 dKYkTLr~ir~GnTk~Ri~q~~~ 78 (81)
..+++||+ +.+.-...++.|..
T Consensus 71 s~aK~LRn-KA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 71 NNSKLLRN-KAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHhHHHHH-HHHHHHHHHHHHHH
Confidence 46778886 77777777887764
No 40
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=37.69 E-value=18 Score=23.20 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q psy1224 19 HLQDQLRDLRTEIEVLKVGEKQ 40 (81)
Q Consensus 19 ~Lq~QLk~Lk~ELe~lK~eek~ 40 (81)
++..++..|+.||+.|..+|+.
T Consensus 3 ~~~~~~~~Lk~El~~L~~~E~~ 24 (106)
T 2aze_B 3 HMGGRLEGLTQDLRQLQESEQQ 24 (106)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888777653
No 41
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.33 E-value=73 Score=19.71 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=26.1
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHhhhh
Q psy1224 6 FLFLRVE-YLEKSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 6 ~~~~R~e-y~eKsk~Lq~QLk~Lk~ELe~lK~e 37 (81)
.+-+|.. |++|=..|+.|=+.|.++|..++..
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456655 8999999999999999999888754
No 42
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.16 E-value=50 Score=17.72 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=14.6
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHHH
Q psy1224 7 LFLRVEYL-EKSKHLQDQLRDLRT 29 (81)
Q Consensus 7 ~~~R~ey~-eKsk~Lq~QLk~Lk~ 29 (81)
+|++++.+ .++.+|++...-|+.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57777744 566777766655553
No 43
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.53 E-value=53 Score=17.89 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q psy1224 13 YLEKSKHLQDQLRDLRTEIEVLKVGEKQ 40 (81)
Q Consensus 13 y~eKsk~Lq~QLk~Lk~ELe~lK~eek~ 40 (81)
.+.-|+.|..-|..-..||+.||.++.+
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4556788888888888888888877654
No 44
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=35.82 E-value=18 Score=21.33 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchHHH
Q psy1224 18 KHLQDQLRDLRTEIEVLKVGEKQSELDL 45 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~eek~t~~D~ 45 (81)
..|.++|.+|+.||-.||..-.-.+++.
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql~n 39 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELRFQAAAGQLAQ 39 (67)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 6799999999999999987544333433
No 45
>1olg_A Tumor suppressor P53 (oligomerization domain); anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 PDB: 1olh_A 1sae_A 1saf_A 1sag_A 1sah_A 1sai_A 1saj_A 1sak_A 1sal_A 3sak_A
Probab=34.90 E-value=17 Score=20.34 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.0
Q ss_pred ccchhHHHHHHHHhc
Q psy1224 53 LGENKYSTLRKCIEA 67 (81)
Q Consensus 53 ~G~dKYkTLr~ir~G 67 (81)
.||..|..|++|+-+
T Consensus 15 rGRe~yEml~ki~es 29 (42)
T 1olg_A 15 RGRERFEMFRELNEA 29 (42)
T ss_dssp ESHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHH
Confidence 699999999999754
No 46
>2wqi_A Tumor protein P73; tumor suppression, transcription factor, tetramer, oligomerization domain, DNA-binding, cooperativity, transcription; 1.70A {Homo sapiens} PDB: 2wtt_A 2kby_A 2wqj_A
Probab=33.96 E-value=18 Score=21.04 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.9
Q ss_pred ccchhHHHHHHHHhc
Q psy1224 53 LGENKYSTLRKCIEA 67 (81)
Q Consensus 53 ~G~dKYkTLr~ir~G 67 (81)
.||..|..|++|+-+
T Consensus 12 RGRe~yEml~ki~es 26 (51)
T 2wqi_A 12 RGRENFEILMKLKES 26 (51)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHH
Confidence 599999999998754
No 47
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.91 E-value=48 Score=20.84 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=16.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhh
Q psy1224 13 YLEKSKHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 13 y~eKsk~Lq~QLk~Lk~ELe~lK~e 37 (81)
+-.+|+.|...+..|+.+++.++.+
T Consensus 50 ae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3346777777777777777776543
No 48
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=33.76 E-value=21 Score=24.93 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=35.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhh----c--chHHHhHHHHHHccchhHHHHHHH
Q psy1224 14 LEKSKHLQDQLRDLRTEIEVLKVGEK----Q--SELDLLHEEQVRLGENKYSTLRKC 64 (81)
Q Consensus 14 ~eKsk~Lq~QLk~Lk~ELe~lK~eek----~--t~~D~iH~eNvr~G~dKYkTLr~i 64 (81)
|.|=.+||+=|++|..||+.|..-.. . .--|-||.+-.+-|.+.-+-.+++
T Consensus 3 ~~~l~~~q~l~kele~eL~eLek~p~y~~~s~Y~~Qk~lWee~~~i~~~~m~~~~~l 59 (154)
T 4fz4_A 3 MAKVEEVQKVVKELEKELGELDKVPSYGDAQDYSYQKALWEEFLRIGKDNMDYASKM 59 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCCSCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55678999999999999999865222 1 134788998888886554443333
No 49
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.63 E-value=53 Score=17.99 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc
Q psy1224 18 KHLQDQLRDLRTEIEVLKVGEKQ 40 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~eek~ 40 (81)
....+|+..|..+|++|+.+.-+
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999887554
No 50
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.41 E-value=60 Score=17.58 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=15.5
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHH
Q psy1224 7 LFLRVEYL-EKSKHLQDQLRDLRTEIEV 33 (81)
Q Consensus 7 ~~~R~ey~-eKsk~Lq~QLk~Lk~ELe~ 33 (81)
++++|+.+ .++.+|+++..-|+.=+.+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 56666644 5566666666655554433
No 51
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=33.02 E-value=14 Score=21.40 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=9.3
Q ss_pred HHHHHcc-chhHH
Q psy1224 48 EEQVRLG-ENKYS 59 (81)
Q Consensus 48 ~eNvr~G-~dKYk 59 (81)
.+++++| ||||.
T Consensus 36 RE~mRq~IRdKY~ 48 (49)
T 1kil_E 36 REVMRQGIRDKYG 48 (49)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 5778888 78884
No 52
>3zy1_A Tumor protein 63; transcription, transcription factor, tetramerization domain, cycle control; 2.15A {Homo sapiens}
Probab=32.17 E-value=20 Score=20.37 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.0
Q ss_pred ccchhHHHHHHHHhc
Q psy1224 53 LGENKYSTLRKCIEA 67 (81)
Q Consensus 53 ~G~dKYkTLr~ir~G 67 (81)
.||..|..|++|+.+
T Consensus 11 rGRe~yE~l~ki~e~ 25 (46)
T 3zy1_A 11 RGRETYEMLLKIKES 25 (46)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHH
Confidence 599999999998764
No 53
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.45 E-value=50 Score=18.25 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy1224 18 KHLQDQLRDLRTEIE 32 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe 32 (81)
+.|.+++..|...|+
T Consensus 19 e~LE~Ri~~LE~KLd 33 (43)
T 2pnv_A 19 EDFEKRIVTLETKLE 33 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 54
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=30.31 E-value=41 Score=22.27 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSEL 43 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~ 43 (81)
.+.|.++|.+|+.||-.|+..-...++
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~atgql 40 (120)
T 3u5e_h 14 KEQLASQLVDLKKELAELKVQKLSRPS 40 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 467999999999999999887554333
No 55
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.28 E-value=50 Score=21.37 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~ 36 (81)
+.|++++++|+.||+.++.
T Consensus 35 ~~l~~e~k~l~ke~~~l~~ 53 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKS 53 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.06 E-value=91 Score=18.58 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=17.1
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHhhh
Q psy1224 7 LFLRVEYLE-KSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 7 ~~~R~ey~e-Ksk~Lq~QLk~Lk~ELe~lK~ 36 (81)
++.|.++++ .-+.|..++..+..+++.++.
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 345566666666666666543
No 57
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=29.73 E-value=21 Score=22.43 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSEL 43 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~ 43 (81)
.+.|.++|.+|+.||-.||..-...++
T Consensus 13 ~eEL~~~L~eLK~ELf~LRfq~atgql 39 (86)
T 3jyw_X 13 KEQLASQLVDLKKELAELKVQKLSRPS 39 (86)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 467999999999999999887554444
No 58
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.63 E-value=96 Score=18.72 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=16.4
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHhhh
Q psy1224 7 LFLRVEYLE-KSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 7 ~~~R~ey~e-Ksk~Lq~QLk~Lk~ELe~lK~ 36 (81)
++.|.++++ .-+.|..++..+..++..++.
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 335556666666666655543
No 59
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.12 E-value=58 Score=23.72 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q psy1224 12 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 40 (81)
Q Consensus 12 ey~eKsk~Lq~QLk~Lk~ELe~lK~eek~ 40 (81)
+.++-|+.|.+++..|..||+.||-+...
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~e 140 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKE 140 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999887664
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.78 E-value=54 Score=19.36 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKVG 37 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~e 37 (81)
+.|+.+...|..|++.|+.+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666554
No 61
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.64 E-value=48 Score=22.00 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEK 39 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek 39 (81)
...|.++|.+|+.||-.|+..-.
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~a 36 (123)
T 2zkr_v 14 KEELLKQLDDLKVELSQLRVAKV 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999987543
No 62
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.28 E-value=56 Score=19.52 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKVGE 38 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~ee 38 (81)
+.||.+...|..|.+.|+..-
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888877643
No 63
>3qh6_A CT296; iron, modeling; HET: PG4; 1.80A {Chlamydia trachomatis} PDB: 3qh7_A
Probab=26.85 E-value=22 Score=24.85 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchHHHhHHHHHHccchhHHHHHHHHhcchhhhHhhhhc
Q psy1224 19 HLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEYTQKAH 78 (81)
Q Consensus 19 ~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH~eNvr~G~dKYkTLr~ir~GnTk~Ri~q~~~ 78 (81)
.|...|+..-.+++.+|+ ..|.-+.||+-....--.|+=+ |.|+|.||.
T Consensus 34 ~Le~~l~~Fv~~vsv~K~-----~~~~RWRenifRSlPev~~iVk------krRLd~fAA 82 (157)
T 3qh6_A 34 QLEAELKLFLKEVAVVKD-----RHLQRWRENVHRTLPGVQMIVK------RVRLDHLAA 82 (157)
T ss_dssp HHHHHHHHHC------------------CCBCGGGTCHHHHHHHH------HHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcc-----hHHHHHHHHHHhcchhHHHHHH------HHHHHHHHH
Confidence 344455555555555443 3788888888766666556543 889999984
No 64
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.81 E-value=1e+02 Score=19.92 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHHHH
Q psy1224 6 FLFLRVEYLEKS-KHLQDQLRDLRTEIE 32 (81)
Q Consensus 6 ~~~~R~ey~eKs-k~Lq~QLk~Lk~ELe 32 (81)
+++.|+++++++ +.|+.++..++..+.
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~ 129 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIG 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544332 334444444444433
No 65
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.73 E-value=52 Score=19.07 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhh
Q psy1224 24 LRDLRTEIEVLK 35 (81)
Q Consensus 24 Lk~Lk~ELe~lK 35 (81)
|...++||..++
T Consensus 51 l~~~k~Ei~elr 62 (77)
T 3trt_A 51 LRQAKQESTEYR 62 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 66
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.30 E-value=1.2e+02 Score=18.90 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=11.7
Q ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Q psy1224 6 FLFLRVEYLEK-SKHLQDQLRDLRTEIEV 33 (81)
Q Consensus 6 ~~~~R~ey~eK-sk~Lq~QLk~Lk~ELe~ 33 (81)
|++.|++.+++ -+.|+.++..++..|..
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~ 120 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMK 120 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544432 23344444444444433
No 67
>4a9z_A Tumor protein 63; transcription; HET: PE4; 2.29A {Homo sapiens}
Probab=25.91 E-value=29 Score=20.82 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.9
Q ss_pred ccchhHHHHHHHHhc
Q psy1224 53 LGENKYSTLRKCIEA 67 (81)
Q Consensus 53 ~G~dKYkTLr~ir~G 67 (81)
.||..|..|++|+.+
T Consensus 12 rGRe~yE~L~kinEs 26 (61)
T 4a9z_A 12 RGRETYEMLLKIKES 26 (61)
T ss_dssp ESHHHHHHHHHHHHH
T ss_pred echhHHHHHHHHHHH
Confidence 599999999998764
No 68
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.86 E-value=25 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchHHHhH
Q psy1224 17 SKHLQDQLRDLRTEIEVLKVGEKQSELDLLH 47 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK~eek~t~~D~iH 47 (81)
.+.|+++|.+|+.||-.||..-.-.+++..|
T Consensus 75 ~eEL~ekL~eLKkELFnLRfQkATGQLeNps 105 (173)
T 3bbo_Z 75 TEQLQEEVVDLKGELFMLRLQKSARNEFKSS 105 (173)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHCCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 3789999999999999998865544444443
No 69
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=23.74 E-value=93 Score=16.60 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=18.5
Q ss_pred HHHHH-HHHHhhHHHHHHHHHHHHHHHH
Q psy1224 7 LFLRV-EYLEKSKHLQDQLRDLRTEIEV 33 (81)
Q Consensus 7 ~~~R~-ey~eKsk~Lq~QLk~Lk~ELe~ 33 (81)
+-+|. .|++|=..|+.+=+.|.++|..
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44554 3777877777777777777654
No 70
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.69 E-value=94 Score=16.61 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=13.6
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHH
Q psy1224 7 LFLRVEYL-EKSKHLQDQLRDLR 28 (81)
Q Consensus 7 ~~~R~ey~-eKsk~Lq~QLk~Lk 28 (81)
+|+||+.+ .++..|+++..-|+
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 57777754 56666666655554
No 71
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.65 E-value=1.5e+02 Score=18.80 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=14.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHhh
Q psy1224 14 LEKSKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 14 ~eKsk~Lq~QLk~Lk~ELe~lK 35 (81)
.++.+.|+.++..|..||+..|
T Consensus 95 ~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 95 KEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456667777777777776554
No 72
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.07 E-value=1.1e+02 Score=16.60 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=19.0
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHH
Q psy1224 7 LFLRVEYL-EKSKHLQDQLRDLRTEIEV 33 (81)
Q Consensus 7 ~~~R~ey~-eKsk~Lq~QLk~Lk~ELe~ 33 (81)
++++|+.+ .++.+|+++..-|+..+.+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 57777755 5677888887777766654
No 73
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=21.96 E-value=88 Score=18.20 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=18.8
Q ss_pred HhhHHHHHHHHHHHHHHHHhhh
Q psy1224 15 EKSKHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 15 eKsk~Lq~QLk~Lk~ELe~lK~ 36 (81)
.-+..|+..|.+|++.|..|..
T Consensus 20 ~~~~~i~~~l~~l~~~v~~L~~ 41 (96)
T 3h6p_C 20 GYAGTLQSLGADIASEQAVLSS 41 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999998865
No 74
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.20 E-value=1e+02 Score=20.31 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=13.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHh
Q psy1224 13 YLEKSKHLQDQLRDLRTEIEVL 34 (81)
Q Consensus 13 y~eKsk~Lq~QLk~Lk~ELe~l 34 (81)
..+....|+.||..|+.++..|
T Consensus 88 l~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 4455566666776666665543
No 75
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=21.17 E-value=31 Score=20.84 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=11.0
Q ss_pred HHHHHcc-chhHHHHH
Q psy1224 48 EEQVRLG-ENKYSTLR 62 (81)
Q Consensus 48 ~eNvr~G-~dKYkTLr 62 (81)
.+++|+| ||||..-+
T Consensus 39 RE~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 39 REAVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhccch
Confidence 5788888 89997533
No 76
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.80 E-value=62 Score=17.98 Aligned_cols=19 Identities=11% Similarity=0.410 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy1224 17 SKHLQDQLRDLRTEIEVLK 35 (81)
Q Consensus 17 sk~Lq~QLk~Lk~ELe~lK 35 (81)
-..|+.++..|...|+.+.
T Consensus 51 ~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 51 NEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456677777777776654
No 77
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.78 E-value=1.1e+02 Score=16.25 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=12.5
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHH
Q psy1224 7 LFLRVEYL-EKSKHLQDQLRDLR 28 (81)
Q Consensus 7 ~~~R~ey~-eKsk~Lq~QLk~Lk 28 (81)
+|++|+.+ ..|..|++...-|+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 56777754 45555555544443
No 78
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.70 E-value=91 Score=17.02 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1224 18 KHLQDQLRDLRTEIEVLKV 36 (81)
Q Consensus 18 k~Lq~QLk~Lk~ELe~lK~ 36 (81)
..|++++..|...|+.|+.
T Consensus 47 ~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666543
No 79
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=20.40 E-value=32 Score=21.59 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.5
Q ss_pred HHHHHHcc-chhHHHH
Q psy1224 47 HEEQVRLG-ENKYSTL 61 (81)
Q Consensus 47 H~eNvr~G-~dKYkTL 61 (81)
-.+++|+| ||||..=
T Consensus 42 ERE~mRq~IRdKY~ik 57 (79)
T 1l4a_E 42 EREEMRQTIRDKYGLK 57 (79)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 35788999 8999753
No 80
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.10 E-value=1.7e+02 Score=18.32 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q psy1224 26 DLRTEIEVL 34 (81)
Q Consensus 26 ~Lk~ELe~l 34 (81)
.|..+++.|
T Consensus 59 ~L~~e~~~L 67 (90)
T 2wt7_B 59 QLIQQVEQL 67 (90)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
Done!