RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1224
(81 letters)
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 52.8 bits (127), Expect = 6e-10
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 10 RVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRK 63
RV Y EK++ LQ QL+ L++E+ + K++ D+LHEE VR G +KY TLR+
Sbjct: 175 RVTYAEKNERLQTQLQALKSELAAARDESKETANDILHEENVRAGRDKYKTLRQ 228
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 30.9 bits (70), Expect = 0.035
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 15 EKSKHLQDQLRDLRTEIEVL---------KVGEKQSELDLLHEEQVRLGEN 56
+ +Q Q ++R E++VL ++ + + L E+ LG N
Sbjct: 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 26.6 bits (59), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 3 LPCFLFLRVEYLEKSKHLQDQLRDLRTEIEVLKVGEK 39
L CF L +K K L + L+ E+E +K+ EK
Sbjct: 224 LDCFKELEEYVAKKYKKLINILKSENIEVEKIKIDEK 260
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 25.9 bits (58), Expect = 2.5
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 10 RVEYLEKSKH-LQDQLRDLRTEIEVLKVGEKQSELDLLHEEQV 51
++E LEK + L+ + ++L + + L+ +K+ EL+ L EEQ+
Sbjct: 101 KLELLEKREEELEKKEKELEQKQQELE--KKEEELEELIEEQL 141
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 25.7 bits (57), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 12 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLL 46
E L K + L ++L++L E+E LK +EL L
Sbjct: 729 ELLPKVERLLEELKELEKELERLKKKLAAAELADL 763
>gnl|CDD|172156 PRK13587, PRK13587,
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase; Provisional.
Length = 234
Score = 25.6 bits (56), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 43 LDLLHEEQVRLGENKYST---LRKCIEASILYEYTQ 75
+DL+ VRL E KY + + + E SI Y Y+Q
Sbjct: 8 IDLIGSTSVRLTEGKYDSEEKMSRSAEESIAY-YSQ 42
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 25.0 bits (56), Expect = 4.2
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 14 LEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKY 58
E+ + L ++L++L E+E LK + L + + K
Sbjct: 718 PERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKV 762
>gnl|CDD|220389 pfam09767, DUF2053, Predicted membrane protein (DUF2053). This
entry is of the conserved N-terminal 150 residues of
proteins conserved from plants to humans. The function
is unknown although some annotation suggests it to be a
transmembrane protein.
Length = 159
Score = 25.1 bits (55), Expect = 4.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 53 LGENKYSTLRKCIEASILYEYTQ 75
G ++Y KC++A+ Y TQ
Sbjct: 23 SGLSEYGAFWKCVKAAGGYILTQ 45
>gnl|CDD|218307 pfam04880, NUDE_C, NUDE protein, C-terminal conserved region.
This family represents the C-terminal conserved region
of the NUDE proteins. NUDE proteins are involved in
nuclear migration.
Length = 166
Score = 24.8 bits (53), Expect = 5.3
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Query: 8 FLRVEY------LEKSKHLQDQLRDLRTEIEV 33
L +EY +++ L+D+LRDL+ E+ V
Sbjct: 18 LLEMEYDEKESLRIENQRLRDELRDLKQELIV 49
>gnl|CDD|222465 pfam13942, Lipoprotein_20, YfhG lipoprotein. This family includes
the YfhG protein from E. coli. Members of this family
have an N-terminal lipoprotein attachment site. The
members of this family are functionally uncharacterized.
Length = 180
Score = 24.6 bits (54), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 38 EKQSELDLLHEEQVRLGENKYSTLRK 63
SELD L E+Q RL +T RK
Sbjct: 127 SSDSELDRLREQQARLQYELETTTRK 152
>gnl|CDD|236745 PRK10722, PRK10722, hypothetical protein; Provisional.
Length = 247
Score = 24.6 bits (54), Expect = 6.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 40 QSELDLLHEEQVRLGENKYSTLRK 63
SELD L ++Q RL T RK
Sbjct: 175 DSELDALRQQQQRLQYQLELTTRK 198
>gnl|CDD|204135 pfam09104, BRCA-2_OB3, BRCA2,
oligonucleotide/oligosaccharide-binding, domain 3.
Members of this family assume an OB fold, which consists
of a highly curved five-stranded beta-sheet that closes
on itself to form a beta-barrel. OB3 has a pronounced
groove formed by one face of the curved sheet and is
demarcated by two loops, one between beta 1 and beta 2
and another between beta 4 and beta 5, which allows for
strong ssDNA binding.
Length = 143
Score = 24.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 16 KSKHLQDQLRDLRTEIEVLKVGEKQSELDLLH 47
K KH Q++ LR IE + K++E L H
Sbjct: 104 KEKHFQERFNSLRATIENIDTFYKEAEKKLAH 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.369
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,826,056
Number of extensions: 294682
Number of successful extensions: 512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 55
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)