RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1224
(81 letters)
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein;
1.90A {Homo sapiens} SCOP: a.137.5.1
Length = 90
Score = 66.6 bits (162), Expect = 2e-16
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 10 RVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRK 63
R EK++ +Q L+ L +E+ + K++ D++H E +RLG +KY TLR+
Sbjct: 21 RTTEAEKNERVQKHLKALTSELANARDESKKTANDMIHAENMRLGRDKYKTLRQ 74
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 58.4 bits (140), Expect = 6e-12
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 10 RVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRK 63
R E+++ L +QL+ L+ ++ K++ +D +H E VR G +KY TLR+
Sbjct: 506 RRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLRE 559
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L
structural genomics, center for structural genomics of
INFE diseases; 2.70A {Salmonella enterica subsp}
Length = 175
Score = 29.0 bits (64), Expect = 0.13
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 9 LRVEYLEKSKHLQDQLRDLRTEIEVLKVGEK--QSELDLLHEEQVRL 53
+ +Y ++ L+ QL R E L ++++ + +E L
Sbjct: 79 IYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESL 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 0.99
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 2 LLPCFLFLRVEYLEKSKHLQDQLRDLRTEIEV---LKVGEKQSELDLLHEEQVRLGENKY 58
+L F V+ + K +QD + + ++ E+ + + S L + E
Sbjct: 21 ILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 59 -----STLRK---CIEASILYEYTQKA 77
LR + + I E Q +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPS 106
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 26.1 bits (58), Expect = 1.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 12 EYLEKSKHLQDQLRDLRTEIEVLK 35
+ + + ++ +D R EIE LK
Sbjct: 29 KLPKTVERFFEEWKDQRKEIERLK 52
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 25.6 bits (57), Expect = 1.8
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 22/63 (34%)
Query: 30 EIEVLKVGEKQSELDLLH---------EEQV--------RLG-----ENKYSTLRKCIEA 67
E + K G + ++ EQ+ RLG + Y TL+ EA
Sbjct: 102 EQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEA 161
Query: 68 SIL 70
+ +
Sbjct: 162 AQI 164
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 24.1 bits (53), Expect = 5.3
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 20 LQDQLRDLRTEIE-----VLKVGEKQ----SELDLLHEEQVRLGENKYSTLR 62
L D + +TE + +LK Q L+ L+ ++ E + +
Sbjct: 250 LVDVIGGRQTEADAIIGYLLKEASLQGLDAVHLEFLY-GSIKALERNTNKVE 300
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 23.7 bits (52), Expect = 7.7
Identities = 2/18 (11%), Positives = 9/18 (50%)
Query: 20 LQDQLRDLRTEIEVLKVG 37
++ L+++R ++
Sbjct: 510 IRMHLQEIRKILKNPSAQ 527
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein,
structural genomics, PSI-biology, protei structure
initiative; 3.10A {Escherichia coli}
Length = 666
Score = 23.7 bits (51), Expect = 9.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 31 IEVLKVGEKQSELDLLHEEQVRLG 54
+V V EK SE+ ++ +E RL
Sbjct: 191 HKVYLVIEKMSEIAIVLDEAERLN 214
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 23.5 bits (50), Expect = 9.2
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 28 RTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKCIEASILYEYTQKAHSEA 81
R VLK G+K+ LD ++ + ++ S +RK I+ ++ + + HS +
Sbjct: 9 RLAASVLKCGQKRLWLDPNESSEISMANSRAS-IRKLIKDGLVMKRSTVIHSRS 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.369
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,084,009
Number of extensions: 48186
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 38
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)