RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12242
(498 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 337 bits (866), Expect = e-111
Identities = 176/454 (38%), Positives = 259/454 (57%), Gaps = 15/454 (3%)
Query: 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGG 100
F GY+TGV A LI + A +I VSIF G
Sbjct: 9 GFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAAST-----VLSGLI----VSIFSVGC 59
Query: 101 IIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLN 160
+IG G + +RFGRK LLI NV V+ ALLQGF+K S + M+I+GR ++G+ G
Sbjct: 60 LIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKS-FYMLIVGRVIVGLGVGGI 118
Query: 161 AGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA-DGWPLLLAFTLV 219
+ L PMY++EI+P LRGA+G++YQL IT I+++ I+GLG + DGW + L V
Sbjct: 119 SVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFV 178
Query: 220 PGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIP 279
P I +I L F PESP++ L+ KG+ EA+ L+ LRG +V E+ E + E
Sbjct: 179 PAILLLIGLLFLPESPRW-LVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAE 237
Query: 280 KVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGM 339
K S E+F +R L + + + + QQL+GINA+ Y+S IF LSD+ T+ +
Sbjct: 238 KASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--LVTIIV 295
Query: 340 GTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIV-MQFVEIFVMSIFCIILVI 398
G +N V T +++ LV+ GR+ LLL+G G+ + ++L + + + I I+ ++
Sbjct: 296 GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFIL 355
Query: 399 MFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYV 458
+F+ FFA+G G +PW +VSELF RP A ++A + NW ANF++G F I I GYV
Sbjct: 356 LFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYV 415
Query: 459 FTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMF 492
F +FA L +F+LF++ VPETK +T EEI +F
Sbjct: 416 FLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 295 bits (756), Expect = 1e-94
Identities = 172/488 (35%), Positives = 258/488 (52%), Gaps = 23/488 (4%)
Query: 11 KPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRS 70
AS P G +S A GY+TGV K S
Sbjct: 7 ADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGG----ALALPAFEFKFTS 62
Query: 71 IADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLA 130
+ + + VSIF GG IG G++++RFGRK LLI + V+
Sbjct: 63 ANSDSYSSS--LWGLV------VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIG 114
Query: 131 ALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITI 190
A+L G + S EM+I+GR L+GI G+ + L PMYL+EI+P LRGA+ ++YQL IT
Sbjct: 115 AILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITF 174
Query: 191 SIVISQILGLG-GLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQ 249
I+++ G G L GW + L L+P + L F PESP++ L+ KG+ EA+
Sbjct: 175 GILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRW-LVGKGRVEEAR 233
Query: 250 RALSWLRGT----IEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQ-LRIPLFISMTVMV 304
++L+ LRGT E+ DE++ + + K + S +F++ + +R LF+ + +
Sbjct: 234 KSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQW 293
Query: 305 AQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL 364
QQ +GINA++Y+S IF A +S A ++ +G +N T V++ LV+ GR+ LLL
Sbjct: 294 FQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLL 353
Query: 365 IGFMGVFVVTVLLTIV-MQFV--EIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS 421
IG G+ + +L I+ FV I+ +++F+ FFA+G G +PW +VSE+F
Sbjct: 354 IGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP 413
Query: 422 QSARPLATSLAVSINWTANFIVGLGFLPI-ESIIHGYVFTIFAVLQAMFVLFIYKKVPET 480
S RP S+AV+ NW ANFIVG F + ESI G VF F L + ++F+Y +PET
Sbjct: 414 LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET 473
Query: 481 KNKTQEEI 488
K +T EEI
Sbjct: 474 KGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 174 bits (442), Expect = 9e-49
Identities = 113/417 (27%), Positives = 201/417 (48%), Gaps = 32/417 (7%)
Query: 99 GGIIGGAATGYVAERFGRKGGLLINNVFVVLAAL------LQGFSKAFSSYEMII---LG 149
G IIGGA GY + RFGR+ L I V ++AL S + + +
Sbjct: 67 GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD- 208
R + GI GL + L+PMY+AEI+P H+RG + + Q I ++ +
Sbjct: 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186
Query: 209 -----GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHD 263
GW + A +P + ++ L F PE+P+Y L+S+G++ +A+ L + G
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRY-LMSRGKQEQAEGILRKIMGNTLATQ 245
Query: 264 EMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT 323
+ E++ + + + ++ I I + + V QQ GIN V+Y++ +IF
Sbjct: 246 ALQEIKHSLDHGR----KTGGKLLMFGVGVI--VIGVMLSVFQQFVGINVVLYYAPEIFK 299
Query: 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQF 383
S A T+ +G +N+ T+++++ V+ GRK L +IG +G+ + L
Sbjct: 300 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 359
Query: 384 VEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIV 443
++++ ++ +V FA+ G + W L+SE+F + R A ++AV+ W AN+ V
Sbjct: 360 QAPGIVALLSMLF---YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFV 416
Query: 444 GLGF-------LPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFR 493
F + +G+ + I+ + + LF++K VPETK KT EE+ A++
Sbjct: 417 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 80.1 bits (198), Expect = 6e-16
Identities = 86/410 (20%), Positives = 160/410 (39%), Gaps = 47/410 (11%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILG 149
+ S F G ++G GY+++RFGRK LL++ + ++ +L FS +Y + ++
Sbjct: 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP---NYTVFLVF 186
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG 209
R L+G+ G A + E P R VGT+ Q+ ++ +V+ L +
Sbjct: 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-----LPLVAYFIPD 241
Query: 210 WPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGT--IEVHDEMDE 267
W L +P + F PESP++ L+S+G+ EA + L + ++ E+
Sbjct: 242 WRWLQLAVSLPTFLFFLLSWFVPESPRW-LISQGRIEEALKILQRIAKINGKKLPAEVLS 300
Query: 268 MRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQL 327
+ E + + S ++F LR M + A Y+ +
Sbjct: 301 LSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT------TAFSYYGLVLDL--GN 352
Query: 328 SDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF 387
G + + L++L+L++ GR+ ++ + +++ FV
Sbjct: 353 LGGNIYLDLFISGLVELPAKLITLLLIDRLGRR----YTMAASLLLAGVALLLLLFVP-- 406
Query: 388 VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT------ANF 441
V F + + F + + +EL+ R + V + F
Sbjct: 407 VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVR--NLGVGVCSTMARVGSIISPF 464
Query: 442 IVGLG----FLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEE 487
+V LG FLP+ +F A+L + LF+ PETK E
Sbjct: 465 LVYLGEKWLFLPL------VLFGGLALLAGILTLFL----PETKGVPLPE 504
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 56.6 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILG 149
+ VS F G +G GY+++RFGR+ LL+ + L +LL F+ SS ++++G
Sbjct: 37 GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA---SSLWLLLVG 93
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG 209
RFL+G+ G A +AE P RG ++ + ++ + LGGLL + G
Sbjct: 94 RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPL--LGGLLAESLG 151
Query: 210 WPLLLAFTLVPGIYQMITLPFCP 232
W L + G+ + L F
Sbjct: 152 WRWLFLILAILGLLLALLLLFLL 174
Score = 45.0 bits (107), Expect = 5e-05
Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 9/183 (4%)
Query: 294 IPLFISMTVMVAQQLSGINAVIYFSTKIFT-MAQLSDTAAQWATLGMGTMNVVMTLVSLV 352
+ L + + + G ++ + + LS A G ++ L+ +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 353 LVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIP 412
L + GR+ LLL+ + LL + + S+ +++ ++ + F
Sbjct: 234 LSDRLGRRRLLLLIGL-------LLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 413 WFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPI-ESIIHGYVFTIFAVLQAMFVL 471
L SEL AR A+ L + + L + ++ +G VF I A L + L
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346
Query: 472 FIY 474
+
Sbjct: 347 LLL 349
Score = 39.6 bits (93), Expect = 0.003
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILG 149
+ +S+F GGI+G G +++R GR+ LL+ + ++LAAL S ++++
Sbjct: 214 GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL--IGLLLAALGLLLLALAPSLALLLVA 271
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG 209
L+G G +E++P RG ++ ++ + + L GLL G
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPL--LAGLLLDTGG 329
Query: 210 WPLLLAFTLVPGIYQMITLPFCP 232
+ + + + L P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352
Score = 28.8 bits (65), Expect = 7.1
Identities = 25/157 (15%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Query: 326 QLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVE 385
LS + A + +L++ L + GR+ +LL+G ++ L ++++ F
Sbjct: 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLG----LLLFALGSLLLAFAS 85
Query: 386 IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGL 445
+ + L+ + ++ ++E F R A L + + ++G
Sbjct: 86 SLWLLLVGRFLLGLGGGALYPAAAAL----IAEWFPPKERGRALGLFSAG-FGLGALLGP 140
Query: 446 GFLPIESIIHG-----YVFTIFAVLQAMFVLFIYKKV 477
+ + G + I +L A+ +LF+ + +
Sbjct: 141 LLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLL 177
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 54.5 bits (132), Expect = 6e-08
Identities = 64/355 (18%), Positives = 115/355 (32%), Gaps = 69/355 (19%)
Query: 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL 148
++ + G +G + R R+ LL +++ LL + S+ +++L
Sbjct: 50 AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA---PSFAVLLL 106
Query: 149 GRFLIGINSGLNAGLAPMYLAEISPVHLRG-AVGTVYQLVITISIVISQILG--LGGLLG 205
R L G+ G+ +A A + P RG A+ ++ + ++ +LG LG LG
Sbjct: 107 ARALAGLAHGVFWSIAAALAARLVPPGKRGRALA-----LVFTGLTLATVLGVPLGTFLG 161
Query: 206 TADGWP----LLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEV 261
GW + L+ + LP P I S L L
Sbjct: 162 QLFGWRATFLAIAVLALLALLLLWKLLP-----PSEISGSLPGPLRTLLRL--------- 207
Query: 262 HDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVI-YFSTK 320
+ + L + M +G A+ Y
Sbjct: 208 -------------------------LRRPGVLLGLLATFLFM-----TGHFALYTYIRPF 237
Query: 321 IFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIV 380
+ ++A S +A L G + L+ L + R+ L+ +LL +
Sbjct: 238 LESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAA---------LLLLAL 288
Query: 381 MQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSI 435
F + + L ++F+ FA P + A LA SL V+
Sbjct: 289 ALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA 343
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 53.2 bits (128), Expect = 2e-07
Identities = 108/463 (23%), Positives = 174/463 (37%), Gaps = 85/463 (18%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRK---GGLLINNVFVVLAALLQGFSKAFSSYEMI 146
AV S G + G G++A++ GRK G LI + +A+ L S S +
Sbjct: 60 AVNGSASI-GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATL 118
Query: 147 ILGRFLIGINSGLNAGLAPMYLAEISPVHLRGA-VGTVY------QLV-----ITISIVI 194
RF +G+ G + L+ + +E + RGA + V+ L + +
Sbjct: 119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGF 178
Query: 195 SQILGLGGLLGTADG---------WPLLLAFTLVPGIYQMITLPF---CPESPKYILLSK 242
L + G W +L+ F VP ++ L F PE+P+Y
Sbjct: 179 KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA---LLALYFRLTIPETPRYTADVA 235
Query: 243 GQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLR----IPLFI 298
+A +S + +++ E DE+ + + +PK S + FT+ L
Sbjct: 236 KDVEQAASDMSAV-LQVKIEAEPDEVE-KASTAVEVPKASWSDFFTHFFKWRHGKHLLGT 293
Query: 299 SMT------VMVAQQL--SGINAVIYFSTKIFTMAQ---LSDTA-AQWATLGMGTMNVVM 346
+ + L I + I +S T L TA GT V
Sbjct: 294 AGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGT--VPG 351
Query: 347 TLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI---------FCIILV 397
V++ LV+I GRK I MG F++TVL FV+ F I V
Sbjct: 352 YWVTVFLVDIIGRKP---IQLMGFFILTVLF---------FVLGFAYNHLSTHGFLAIYV 399
Query: 398 IMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPI------- 450
+ F GP + + + E+F R A ++ + I GFL +
Sbjct: 400 LAQF-FANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT 458
Query: 451 ----ESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIA 489
I G+V IFA+ + +LF +PETK K+ EE++
Sbjct: 459 KGYPTGIWMGHVLEIFALFMFLGILFTLL-IPETKGKSLEELS 500
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 51.4 bits (123), Expect = 5e-07
Identities = 61/328 (18%), Positives = 108/328 (32%), Gaps = 27/328 (8%)
Query: 102 IGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNA 161
G G +R+GR+ ++ + V L GF+ Y + + R +IGI G
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA---PGYITMFIARLVIGIGMGGEY 118
Query: 162 GLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPG 221
G + Y+ E P HLR + + V++ + + DGW L +++P
Sbjct: 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPI 178
Query: 222 IYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKV 281
I+ + PE+ + G+ L G I I
Sbjct: 179 IFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE--------------HRIANIVMT 224
Query: 282 SLREMFTNAQLRIPLFIS-MTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMG 340
M +A R P F+ + +++ L T + LS +
Sbjct: 225 LAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSN 284
Query: 341 TMNVVMTLVSLVLVEISG-RKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIM 399
+V V L + G RK + G L I+ F +++ + L
Sbjct: 285 IGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQ------LLIIPVFAIGANVAVLGLGLFFQ 338
Query: 400 FVVFFAVGPGSIPWFLVSELFSQSARPL 427
++ + G +P + E F R
Sbjct: 339 QMLVQGIW-GILP-KHLGEYFPTDQRAA 364
Score = 36.8 bits (85), Expect = 0.026
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLI----NNVFVVLAALLQGFSKAFSSYEM 145
A V G I+GG G++ + GR+ + + ++ + ++ +
Sbjct: 277 ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG------ANVAV 330
Query: 146 IILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAV-GTVYQL 186
+ LG F + G+ P +L E P R A G YQL
Sbjct: 331 LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQL 372
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 49.6 bits (119), Expect = 2e-06
Identities = 72/390 (18%), Positives = 141/390 (36%), Gaps = 44/390 (11%)
Query: 93 VSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFL 152
S F G ++G G++ +RFG + L + V + LQ F+ A+ S + + R L
Sbjct: 35 FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS---LYILRVL 91
Query: 153 IGI-NSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWP 211
+G + G+ + +A P R +++ + +I L G + W
Sbjct: 92 LGAAEAPFFPGI-ILIVASWFPASERATAVSIFNSAQGLGGIIGG--PLVGWILIHFSWQ 148
Query: 212 LLLAFTLVPGI-YQMITLPFCPESPKYILLSKGQE--LEAQRALSWLRGTIEVHDEMDEM 268
V GI + ++ L F P+ P+ +E + L+ +G +
Sbjct: 149 WAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPK---- 204
Query: 269 RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLS 328
K ++E+ + ++ L + +V L +F T + LS
Sbjct: 205 -----------KYQIKELLKDRRV-WGLALG-QFLVNIGLGFFL--TWFPTYLVQERGLS 249
Query: 329 DTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL------IGFMGVFVVTVLLTIVMQ 382
L G M + +V + + + GR + LL + F + L + +
Sbjct: 250 -------ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL 302
Query: 383 FVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFI 442
++I L ++ + FF +G G+I W L+S+ + L L S+ +
Sbjct: 303 MFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV 362
Query: 443 VGLGFLPIESIIHGYVFTIFAVLQAMFVLF 472
+ I + F ++ A L
Sbjct: 363 GPIVIGAIAATT--GSFAGALMVVAALALI 390
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 48.6 bits (116), Expect = 4e-06
Identities = 57/352 (16%), Positives = 114/352 (32%), Gaps = 45/352 (12%)
Query: 92 AVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRF 151
++ F G + G +++RFGR+ LLI ++L AL SS ++++ R
Sbjct: 37 LLTAFSLGYALAQPLAGRLSDRFGRRRVLLI---GLLLFALGLLLLLFASSLWLLLVLRV 93
Query: 152 LIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWP 211
L G+ G A +A+ P RG + + + + LGGLL + GW
Sbjct: 94 LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPL--LGGLLASLFGWR 151
Query: 212 LLLAFTLVPG-IYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRA 270
+ + ++ P P K E + +
Sbjct: 152 AAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK-------------- 197
Query: 271 EYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDT 330
L + + + + A++ + + LS
Sbjct: 198 --------------------LLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSAL 237
Query: 331 AAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390
A G + + L+ L + GR+ LL+ + + + + L ++ +
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297
Query: 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFI 442
+ ++L + F LVS+L + R A+ L + +
Sbjct: 298 VALLLLGFGAGLVF-----PALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
Score = 41.6 bits (98), Expect = 6e-04
Identities = 22/110 (20%), Positives = 49/110 (44%)
Query: 86 TMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEM 145
++ + + + G IG G +++R GR+ LL+ + ++LAAL S
Sbjct: 236 ALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLW 295
Query: 146 IILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195
+++ L+G +GL +++++P RG +Y ++ +
Sbjct: 296 LLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 48.4 bits (115), Expect = 7e-06
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 94 SIFCAGGIIGGAATGYVAERFGRKGGLLI----NNVFVVLAALLQGFSKAFSSYEMIILG 149
I G ++G G +A++ GRK LLI N F ++ +QG Y +
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQG-------YGFFLFC 261
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGA----------VGTVYQLVITISIVISQILG 199
R L G G + Y AE RG +G +Y + +I+ G
Sbjct: 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH--YG 319
Query: 200 LGGLLGTA---DGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLR 256
+G+A W + + P ++ + L F PESP++ L G+ EA L
Sbjct: 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF-FLENGKHDEAWMILK--- 375
Query: 257 GTIEVHDEMDEMRAE 271
+HD MRA+
Sbjct: 376 ---LIHDT--NMRAK 385
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 44.6 bits (106), Expect = 1e-05
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 93 VSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFL 152
++ + G +I +G + +RFGRK LL+ VL+ + S S+ ++I+ RFL
Sbjct: 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFL 60
Query: 153 IGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPL 212
G + +A+I P RG + I + ++ LGG+L GW
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLG--PPLGGVLAQFLGWRA 118
Query: 213 LLAFTLVPGIYQMITLPF 230
F + + I L F
Sbjct: 119 PFLFLAILALAAFILLAF 136
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 46.2 bits (110), Expect = 2e-05
Identities = 69/366 (18%), Positives = 133/366 (36%), Gaps = 42/366 (11%)
Query: 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRK----GGLLINNVFVVLAALLQG 135
++ Q+ +F+ + G G G +A+R GR+ +L+ +VF +L AL
Sbjct: 49 LDPVQLGFLFSAGL----IGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATN 104
Query: 136 FSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195
+ +++IL RFL G+ G ++E +P RG + I +
Sbjct: 105 VT------QLLIL-RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG 157
Query: 196 QILGLGGLLGTADGWPLLLAF-TLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSW 254
L G L GW L + P + ++ + F PES + L+SK E +
Sbjct: 158 GF--LAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDF-LVSKRPETVRRIV--- 211
Query: 255 LRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAV 314
++ E E ++ + + + +F RI + + + + V
Sbjct: 212 NAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLL-------V 264
Query: 315 IYFSTKIFTMAQLSDTAAQW--ATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFV 372
+ + + + A G N + S+ I G L +G V
Sbjct: 265 GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSI----IFGW----LADRLGPRV 316
Query: 373 VTV--LLTIVMQFVEIFVMSIFCIILVIMFVV-FFAVGPGSIPWFLVSELFSQSARPLAT 429
+ LL V + + ++L++ + FF G S + L++ + + R
Sbjct: 317 TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGV 376
Query: 430 SLAVSI 435
A+ I
Sbjct: 377 GWAIGI 382
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 44.6 bits (106), Expect = 7e-05
Identities = 78/353 (22%), Positives = 130/353 (36%), Gaps = 63/353 (17%)
Query: 101 IIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMI--------ILGRFL 152
+G G+ +R GRK L+I + + + LL G SY I +L R +
Sbjct: 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL---LPSYATIGIWAPILLLLARLI 105
Query: 153 IGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIV--------ISQILGLGGLL 204
G + G G A +YLAE +P RG G+ Q+ + ++ +S +LG LL
Sbjct: 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALL 165
Query: 205 GTADGW--PLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262
GW P L++ LV +LR +E
Sbjct: 166 --EWGWRIPFLVSAVLVLIGL------------------------------YLRRNLE-- 191
Query: 263 DEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF 322
E E K + E T R P + + +++A + Y T +
Sbjct: 192 -ETPVFEKAQEKHKKKR-GPIAETLTKH--RKPFLLGLGLVIATTTTFYLITTYLPTYLT 247
Query: 323 TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQ 382
LS +A + + + +S L + GR+ +L+I + ++ V L + +
Sbjct: 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL 307
Query: 383 FVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSI 435
F + F LV+ + + G + FL ELF R SLA ++
Sbjct: 308 DSGSFTLFFF---LVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLAYNL 356
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 39.9 bits (94), Expect = 0.003
Identities = 32/150 (21%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 273 ESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAA 332
+KL K S +F N L + L +++ + +A + G ++Y+ T + + A
Sbjct: 219 TGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGS-IMVYYVTYVL---GDPELFA 274
Query: 333 QWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392
L G ++ ++ LV+ G+K L LIG + + V +LL +
Sbjct: 275 YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL---------YFTPAG 325
Query: 393 CIILVIMFVVFFAVG---PGSIPWFLVSEL 419
++L+++ ++ VG +PW +V++
Sbjct: 326 SVVLIVVALIIAGVGTGIANPLPWAMVADT 355
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 37.2 bits (87), Expect = 0.018
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 35/161 (21%)
Query: 279 PKVSLREM----FTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQW 334
KVSLR+M F N L I L + + +A + ++Y+ T + A L
Sbjct: 207 EKVSLRDMFKALFKNRPLLILLLLYLLNALAMAVRN-GLLLYYFTYVLGNAGL----FSV 261
Query: 335 ATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCI 394
L ++ + L + G+K L+G +
Sbjct: 262 LLLIGTIAAILGAPLWPWLAKRFGKKRTFLLG--------------------------ML 295
Query: 395 ILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSI 435
+ I V+ F + PGS+ FLV + + LAT L ++
Sbjct: 296 LAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAM 336
Score = 29.5 bits (67), Expect = 4.4
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL 148
F+V + I I+G ++A+RFG+K L+ + + +L F S + ++
Sbjct: 259 FSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL-PPGSLWLFLV 317
Query: 149 GRFLIGINSGLNAGLAPMYLAEI 171
L GI GL L LA++
Sbjct: 318 LVVLAGIGLGLATLLPWAMLADV 340
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 35.7 bits (83), Expect = 0.055
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 45/174 (25%)
Query: 89 FAVAVS----IFCAG--GIIGGAATG-YVAERFGRKGGLLINNVFVVLAALLQGFSKA-- 139
F + V+ F AG G++ GA G +A+R GRK + +V AL FS A
Sbjct: 45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK------RILIVSVALFGLFSLATA 98
Query: 140 -FSSYEMIILGRFLIGINSGLNAGLAPMYLA---EISPVHLRG-AVGTVYQLVITISIVI 194
+ +++ R L G+ GL L P +A E LRG AV +Y + +
Sbjct: 99 QAWDFPSLLVARLLTGV--GLGGAL-PNLIALTSEAVGPRLRGTAVSLMY-CGVPFGGAL 154
Query: 195 SQILGLGGLLGTADGW----------PLLLAFTLVPGIYQMITLPFCPESPKYI 238
+ ++G+ L W PLLL L + + PES +
Sbjct: 155 ASVIGV--LAAGDAAWRHIFYVGGVGPLLLVPLL---------MRWLPESRAFA 197
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 33.9 bits (78), Expect = 0.18
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 103 GGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAG 162
GG G + +R+GR+ ++I+ V + L GF+ + + + + R +IG+ G
Sbjct: 71 GGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWT---LFIARLVIGMGMAGEYG 127
Query: 163 LAPMYLAEISPVHLRG 178
+ Y+ E P HLR
Sbjct: 128 SSATYVIESWPKHLRN 143
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 33.1 bits (76), Expect = 0.32
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 107 TGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPM 166
TG++A+RFG + LI+ L +LL G + + E++I+ R + G G L+
Sbjct: 57 TGWLAKRFGTRRLFLISTFAFTLGSLLCGVA---PNLELMIIFRVIQGFGGGPLIPLSFS 113
Query: 167 YLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGI 222
L I P RG ++ L + ++ + LGG + W + + GI
Sbjct: 114 TLLNIYPPEKRGRAMAIWGLTVLVAPALGPT--LGGWIIENYHWRWIFLINVPIGI 167
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 33.0 bits (76), Expect = 0.43
Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 19/162 (11%)
Query: 240 LSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMF--TNAQLRIPLF 297
L K Q LS + DE + E +S K P L++ L P F
Sbjct: 251 LPKAQGRLESLDLSRPKAK----DETRKQAEEPKSGKSAPD-FLKDFPKTLKRLLTNPTF 305
Query: 298 ISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEIS 357
+ + + + S I F K + Q +A+ A +G +N+ V ++ +
Sbjct: 306 MLVVLAQVFESSVIAGYSTFLPK-YLETQYGLSASY-ANFLIGVVNLPAAAVGIL---LG 360
Query: 358 GRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIM 399
G + F +T I V F + +
Sbjct: 361 GL-------IIKKFKLTARGMAKFAIFVILVSLAFYLPYFFI 395
>gnl|CDD|149126 pfam07884, VKOR, Vitamin K epoxide reductase family. Vitamin K
epoxide reductase (VKOR) recycles reduced vitamin K,
which is used subsequently as a co-factor in the
gamma-carboxylation of glutamic acid residues in blood
coagulation enzymes. VKORC1 is a member of a large
family of predicted enzymes that are present in
vertebrates, Drosophila, plants, bacteria and archaea.
Four cysteine residues and one residue, which is either
serine or threonine, are identified as likely
active-site residues. In some plant and bacterial
homologues the VKORC1 homologous domain is fused with
domains of the thioredoxin family of oxidoreductases.
Length = 138
Score = 31.1 bits (71), Expect = 0.55
Identities = 10/70 (14%), Positives = 29/70 (41%)
Query: 345 VMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFF 404
V+ L+ ++ + +G +V V+ ++ + ++ +FV+ C+ ++ V
Sbjct: 69 VVLLLGVLGLAGVTLSRWTWLGLFLGSLVGVVFSVYLIYISVFVIGALCLYCILSAAVSI 128
Query: 405 AVGPGSIPWF 414
+ S
Sbjct: 129 VLFILSTIGV 138
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 32.2 bits (73), Expect = 0.61
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 102 IGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNA 161
GGA G +A++FGRK ++ + +V ++ G S S M+ L RF++G+
Sbjct: 68 FGGALFGLLADKFGRKPLMMWS---IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEY 124
Query: 162 GLAPMYLAEISPVHLR 177
A Y E P HL+
Sbjct: 125 ACASTYAVESWPKHLK 140
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 31.0 bits (71), Expect = 1.6
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 339 MGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVT------VLLTIVMQFVEIFVMSIF 392
+ + V+ V T+L++G + + V++T V+QFV + SI
Sbjct: 134 GAWLYLAAIKVAAVFGPWDITLTILILGLITLIYSVIGGLWAVVVTDVVQFVILMAASIA 193
Query: 393 CIILVIMFV 401
+L + V
Sbjct: 194 VAVLALNAV 202
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 30.5 bits (69), Expect = 2.2
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 95 IFCAGGI---IGGAATGYVAERFGRKGGLLINNVFVVLAAL----LQGFSKAFS-SYEMI 146
+F AG + IGG G +A++ GRK +LI+ + +L L G+ + + ++
Sbjct: 68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALL 127
Query: 147 ILGRFLIGINSGLNAGLAPMYLAEIS 172
+L R G++ G G + Y++E++
Sbjct: 128 LLARLFQGLSVGGEYGTSATYMSEVA 153
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 30.4 bits (69), Expect = 2.4
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 91 VAVSIFCAGGIIGGAATGYVAERF--GRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL 148
A +++ GG++G G+++++ GR+G L + + +++ +LL + ++ M ++
Sbjct: 256 WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLI 315
Query: 149 GRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG-GLLGTA 207
F +G L + +E++P + A GT V + + + GL G L
Sbjct: 316 CLFALGFLVYGPQMLIGVIASELAP---KKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372
Query: 208 DGW 210
GW
Sbjct: 373 FGW 375
>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791). This
family consists of several eukaryotic proteins of
unknown function.
Length = 354
Score = 29.9 bits (67), Expect = 3.2
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 95 IFCAG---GIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRF 151
+F AG ++ G G +A++ GRK L + +L+ + +K +Y+++++GRF
Sbjct: 74 LFIAGFGSSMLFGTIVGSLADKQGRKRACLTYCILYILSCI----TKHSPNYKVLMIGRF 129
Query: 152 LIGINSGL 159
L GI + L
Sbjct: 130 LGGIATSL 137
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 29.6 bits (67), Expect = 3.9
Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 17/166 (10%)
Query: 81 EQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAF 140
+Q+ + AV V G + G++ ++FG + ++ + + + L G A
Sbjct: 35 STAQLGNLVAVPV----LAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL--AV 88
Query: 141 SSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGA----------VGTVYQLVITI 190
SY +++L R IGI G A P ++ P ++G +G +
Sbjct: 89 QSYSVLLLLRLFIGIAGGSFASCMPW-ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147
Query: 191 SIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPK 236
I+ S I G G A GW ++ + + ++ ++P
Sbjct: 148 PIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP 193
>gnl|CDD|218853 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
This family of proteins are transient receptor potential
(TRP) ion channels. They are essential for cellular
viability and are involved in cell growth and cell wall
synthesis. The genes for these proteins are homologous
to polycystic kidney disease related ion channel genes.
Length = 531
Score = 29.5 bits (67), Expect = 4.1
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 341 TMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMF 400
N + +++V ++ LL + F +F + ++ VM V + + + L+I+
Sbjct: 444 RTNALNIAIAVVRF-LN---ALLFLFFSPLFGQSEIVRGVMGVVIFVINAAVALFLLILI 499
Query: 401 VVFFAVG 407
+ +
Sbjct: 500 AINTIIA 506
>gnl|CDD|218842 pfam05987, DUF898, Bacterial protein of unknown function (DUF898).
This family consists of several bacterial proteins of
unknown function. Some of the family members are
described as putative membrane proteins.
Length = 339
Score = 29.5 bits (67), Expect = 4.4
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 363 LLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVS 417
+L GF+ V+ V I +Q + +++ ++F A+ +PW +V
Sbjct: 65 ILKGFLIALVLLVAYYIAVQLSPLLG--------LVLLLLFLAL----LPWLIVR 107
>gnl|CDD|182554 PRK10565, PRK10565, putative carbohydrate kinase; Provisional.
Length = 508
Score = 29.6 bits (67), Expect = 4.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 97 CAGGIIGGAATGYVAERFGRKGGLLINNVFVVL 129
CAG + GAA +A RFG + G+L ++F L
Sbjct: 463 CAGCVAHGAAADVLAARFGTR-GMLATDLFSTL 494
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 29.4 bits (67), Expect = 4.5
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 340 GTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVV---------TVLLTIVMQFVEIFVMS 390
G M +V+ L +L L ++G ++I MG+ + V+ T V+Q + + +
Sbjct: 129 GRMGIVLYLPALALSAVTGINIYIIILLMGIITIIYTVLGGIEAVIWTDVIQGIVLLGGA 188
Query: 391 IFCIILVIM 399
+ C+I++I
Sbjct: 189 LLCLIIIIF 197
>gnl|CDD|147197 pfam04906, Tweety, Tweety. The tweety (tty) gene has not been
characterized at the protein level. However, it is
thought to form a membrane protein with five potential
membrane-spanning regions. A number of potential
functions have been suggested in.
Length = 406
Score = 29.2 bits (66), Expect = 5.2
Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 299 SMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQW------ATLGMGTMNVVMTLVSLV 352
QQL+GI ++ ++ +L++ + L + +++V+ LV L+
Sbjct: 149 GNVGNAVQQLTGI---PFWKGVGLSLTELAEQGDFYEYYRWLGYLLLLLLDLVICLVLLL 205
Query: 353 LVEISGRKTLLLIGFMGVFVVT 374
+ R L+++ G+ +
Sbjct: 206 GLARQSRCLLIVMSVCGLLALI 227
>gnl|CDD|237216 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit
C-like protein; Provisional.
Length = 477
Score = 29.1 bits (65), Expect = 5.4
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Query: 79 VIEQSQVTMIFAVAVSIF-----CAGGIIGGAATGYVAERFG------RKGGLLINNVFV 127
VI + + MI AVAVSI AGG+ GY R + GLL +
Sbjct: 55 VINITTIAMIIAVAVSIVLVLMALAGGLAAALFRGYPGFRVTLELILVKISGLLFGPIIG 114
Query: 128 VLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187
+ +A F S + G L I +G+ AG+ L + R Y LV
Sbjct: 115 IFSAATIDFLTVIFSGGVFNYGYVLGAILTGMIAGILREVLISTKYLKNRNLSDFAY-LV 173
Query: 188 ITISIVISQIL 198
+++ +VI+ L
Sbjct: 174 LSVGMVIASFL 184
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 28.3 bits (64), Expect = 5.9
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 332 AQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTV--LLTIVMQFVEIFVM 389
A A LG+G N ++ L+ +++ L+L ++ V+ + L+ +V F
Sbjct: 81 AILAVLGLGLFNFIIILIPFIIL-----ILLVLSLWIIGLVLLLSPLILLVKGIFGGFFF 135
Query: 390 SIFCIILVIMFV 401
IF + I
Sbjct: 136 IIFNVFFSIGLF 147
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 29.2 bits (66), Expect = 5.9
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 345 VMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVE 385
++ + VL+ I + + +I + + +VT++ + F E
Sbjct: 45 LVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTTTYFRE 85
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 29.3 bits (66), Expect = 6.3
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 345 VMTLVSLVLVEISGRKTLLLIGFM-GVFVVTVLLTIVMQFV-EIFVMSIFCIILVIMFVV 402
+ +++L L+ I G G + + +LL +++ IF S+ I L+ +F
Sbjct: 314 SLAILTLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIAIFSSSMIAIALLYLFGG 373
Query: 403 FFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIF 462
+ + FS S I + F+ + L + S+I + + +
Sbjct: 374 SYNSEIAL---IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWY 430
Query: 463 AVLQAMFVLFIY 474
LQ F+
Sbjct: 431 DALQDAIFAFLS 442
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 29.1 bits (66), Expect = 6.4
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 36/174 (20%)
Query: 255 LRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAV 314
GT E + E+ + + S+K I + +F N QL I + +A + V
Sbjct: 191 FFGTKERYSEIPKNIEKKLSLKQI----FKALFKNDQLLILCLAYLFYNLAFNIKNGVQV 246
Query: 315 IYFS-----TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLV----LVEISGRKTLLLI 365
YF+ ++F+ MG++ + L+ ++ LV+ GRK L
Sbjct: 247 YYFTYVLGDPELFSY--------------MGSIAIGAGLIGVLLFPRLVKKFGRKILFAG 292
Query: 366 GFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGS-IPWFLVSE 418
G LL ++ + F S +ILV++ + F + + W LV++
Sbjct: 293 GI--------LLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVAD 338
>gnl|CDD|214805 smart00756, VKc, Family of likely enzymes that includes the
catalytic subunit of vitamin K epoxide reductase.
Bacterial homologues are fused to members of the
thioredoxin family of oxidoreductases.
Length = 142
Score = 28.1 bits (63), Expect = 6.8
Identities = 6/58 (10%), Positives = 24/58 (41%)
Query: 345 VMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVV 402
V+ ++++ + + + ++ + ++ +FV+ C+ ++ VV
Sbjct: 73 VVLALAVLGLLGVTLPRWTWRLLFLGSLAGAVFSVYLIYLLVFVIKALCLYCILSAVV 130
>gnl|CDD|222919 PHA02688, PHA02688, ORF059 IMV protein VP55; Provisional.
Length = 323
Score = 28.5 bits (64), Expect = 8.6
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 17/59 (28%)
Query: 364 LIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGS-IPWFLVSELFS 421
L F G+F + V+ + I+ +I+ ++F S + WFL LF+
Sbjct: 278 LFSFFGLFDIN-------------VIGVIIILFIIVLLIF---DVNSKLLWFLAGTLFT 320
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 28.8 bits (65), Expect = 8.7
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 99 GGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEM-----IILGRFLI 153
G I+ GA Y+ +R GR+ GL++ + LL F +++ + ++LGR L
Sbjct: 72 GAIVLGA---YI-DRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQ 127
Query: 154 GINSGLNAGLAPMYLAEISPVHLRG 178
G ++G+ G +YLAEI+ +G
Sbjct: 128 GFSAGVELGGVSVYLAEIATPGRKG 152
>gnl|CDD|223419 COG0342, SecD, Preprotein translocase subunit SecD [Intracellular
trafficking and secretion].
Length = 506
Score = 28.5 bits (64), Expect = 8.8
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 304 VAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLV-------SLVLVEI 356
+ + ++G + I T FT + D A L G + + +V +L I
Sbjct: 289 INEAITGGSGQI---TGNFTAEEARDLALL---LRSGALPAPLEIVEERTVGPTLGADSI 342
Query: 357 SGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVF 403
LIG V V +L + + + + ++++ + +
Sbjct: 343 KAGLIAGLIGLALVAVFMLLYYRLAGVIAAIALGLNGVLILAVLSLL 389
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 28.4 bits (64), Expect = 8.9
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 96 FCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGI 155
F I+ A G + ++ G K G+++ + + A L + + SY ++ F++
Sbjct: 58 FGGYFIMSLPA-GLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILAS 116
Query: 156 NSGL 159
GL
Sbjct: 117 GIGL 120
>gnl|CDD|225851 COG3314, COG3314, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 427
Score = 28.5 bits (64), Expect = 8.9
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 361 TLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCII-LVIMFVVFFAVGPGSI 411
+++LIG F L + V I ++ LV + + F +GP
Sbjct: 55 SIILIGAGLPFFKGTFLKPFL----SIVWLILRVLGLVFVGMYVFQMGPEVA 102
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 28.7 bits (64), Expect = 9.0
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 210 WPLLLA-FTLVPGIYQMITLPF-----CPESPKYILLSKGQELEAQRALSWLRGTIEVH 262
WP++LA + L+ I +++ CP + I + Q L + L WL GT +
Sbjct: 131 WPVMLAAYRLIQAIPELVRTGLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKAR 189
>gnl|CDD|221410 pfam12077, DUF3556, Transmembrane protein of unknown function
(DUF3556). This family of transmembrane proteins is
functionally uncharacterized. This protein is found in
bacteria. Proteins in this family are typically between
576 to 592 amino acids in length.
Length = 574
Score = 28.5 bits (64), Expect = 9.3
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 344 VVMTLVSLVLVEISGR-KTLLLIGFMGVFVVTVLLTIVMQF-VEIFVMSIFCIILVIMFV 401
+ LV LVL G T L M F + +L M +E V IF ++ + FV
Sbjct: 295 AIEFLVPLVLFFSHGGWPTWLAAAVMVCFHLFILSAFPMGVPLEWNVFFIFGVLFL--FV 352
Query: 402 VFFAVGPGSI--PWFLV 416
VG + PW L
Sbjct: 353 GHAGVGLADLSSPWLLA 369
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 28.5 bits (64), Expect = 9.3
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 93 VSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFL 152
+S + G ++G + R+ K LL V+ + S SSY M+ +GR +
Sbjct: 44 ISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS---SSYLMLAIGRLV 100
Query: 153 IGINSGLNAGLAPMYLAEISP 173
G G G+ + L++I
Sbjct: 101 SGFPHGAFFGVGAIVLSKIIK 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.402
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,841,333
Number of extensions: 2676440
Number of successful extensions: 5989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5666
Number of HSP's successfully gapped: 496
Length of query: 498
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 397
Effective length of database: 6,457,848
Effective search space: 2563765656
Effective search space used: 2563765656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)