RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12242
         (498 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 71.6 bits (174), Expect = 5e-14
 Identities = 50/405 (12%), Positives = 118/405 (29%), Gaps = 26/405 (6%)

Query: 89  FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAF-SSYEMII 147
              A+S             G V++R   +  L    +      L  GF     SS  ++ 
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 148 LGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA 207
           +  FL G   G+        +        RG + +V+     +   I  +L L G+    
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180

Query: 208 DGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDE 267
           D    L        +  +       ++P+   L   +E +      +     +       
Sbjct: 181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ------- 233

Query: 268 MRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQ- 326
                       +++ +++F    L   L   + +           ++ +S       + 
Sbjct: 234 ------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH 281

Query: 327 LSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI 386
            +   + WA        +  TL+   + +   R      G   + +VT+   +       
Sbjct: 282 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--- 338

Query: 387 FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLG 446
              +    ++ ++ + F   GP  +      EL  + A   A        +    +    
Sbjct: 339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 447 FLPIESIIHGY--VFTIFAVLQAMFVLFIYKKVPETKNKTQEEIA 489
            +       G+   F +      + V+ +   +   K + ++ + 
Sbjct: 399 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ 443


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 33/388 (8%), Positives = 81/388 (20%), Gaps = 37/388 (9%)

Query: 89  FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL 148
             +  +      ++     G ++++ G +  LL     +++              +  IL
Sbjct: 45  TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104

Query: 149 GRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD 208
              ++G         A     E     +       +        V   +      +    
Sbjct: 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164

Query: 209 GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEM 268
               +        +   + L F                    A S               
Sbjct: 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL-------------- 210

Query: 269 RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLS 328
                                              ++  + G++       + F     S
Sbjct: 211 ---------------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249

Query: 329 DTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFV 388
             A       +      M  +    +       +  IG     ++   +  V      F 
Sbjct: 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309

Query: 389 MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVG--LG 446
            S   ++++    +F         +  ++  F          +          I    L 
Sbjct: 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369

Query: 447 FLPIESIIHGYVFTIFAVLQAMFVLFIY 474
               ESI     + +  ++   F L   
Sbjct: 370 GNMYESIGFQGAYLVLGLVALGFTLISV 397


>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 233

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query: 95  IFCAGGIIGGAATGYVAERFGR 116
           I+ AG   G      VA   GR
Sbjct: 197 IYAAGDCTGLLPLASVAAMQGR 218


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,749,959
Number of extensions: 80183
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 19
Length of query: 498
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,185,626
Effective search space: 484921034
Effective search space used: 484921034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)