BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12243
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D0J|A Chain A, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|B Chain B, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|C Chain C, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|D Chain D, Crystal Structure Of Human Glcat-S Apo Form
Length = 246
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 132/222 (59%), Gaps = 11/222 (4%)
Query: 32 DLPIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPY 91
LP IY ITPTY R Q AELTRL T + LHWI+ +D S ++S L + G+P
Sbjct: 1 QLPTIYAITPTYSRPVQKAELTRLANTFRQVAQLHWILVEDAAARSELVSRFLARAGLPS 60
Query: 92 THIASPMPPVYRTNNAVPPRGVANRRAALAWIRSY-----VKSGVVYFGDDDNTFDLKLF 146
TH+ P P Y+ PR R A LAW+R + GV++F DDDNT+ L+LF
Sbjct: 61 THLHVPTPRRYKRPGL--PRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELF 118
Query: 147 DEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPAKRKFPVDMAGFAVNVDLIL 206
E+R T+K+S++PVGL+G P++ G V+G++ W A R F +DMAGFAV++ +IL
Sbjct: 119 QEMRTTRKVSVWPVGLVGGRRYERPLVENGKVVGWYTGWRADRPFAIDMAGFAVSLQVIL 178
Query: 207 KHPNATMPYKA---GYEEDRFISSLGVKLSDIEPKANNCSEV 245
+P A + G +E F+ + + ++EPKANNC++V
Sbjct: 179 SNPKAVFKRRGSQPGMQESDFLKQI-TTVEELEPKANNCTKV 219
>pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1FGG|B Chain B, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
pdb|1KWS|B Chain B, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
Length = 261
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 129/229 (56%), Gaps = 20/229 (8%)
Query: 36 IYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIA 95
IY +TPTY R Q AEL RL QTL +P LHW++ +D +P++S LL G+ +TH+
Sbjct: 3 IYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLV 62
Query: 96 SPMPPVYRTNNAVP----PRGVANRRAALAWIRSYVKS-------------GVVYFGDDD 138
P R P PRGV R AL W+R + GVVYF DDD
Sbjct: 63 VLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDD 122
Query: 139 NTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPAKRKFPVDMAGF 198
NT+ +LF+E+R T+ +S++PVGL+G P ++ G V+GF +W R FPVDMAGF
Sbjct: 123 NTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGF 182
Query: 199 AVNVDLILKHPNATMPYKA--GYEEDRFISSLGVKLSDIEPKANNCSEV 245
AV + L+L PNA A G+ E +S L V D+EP+A NC+ V
Sbjct: 183 AVALPLLLDKPNAQFDSTAPRGHLESSLLSHL-VDPKDLEPRAANCTRV 230
>pdb|3CU0|A Chain A, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
pdb|3CU0|B Chain B, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
Length = 281
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 129/229 (56%), Gaps = 20/229 (8%)
Query: 36 IYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIA 95
IY +TPTY R Q AEL RL QTL +P LHW++ +D +P++S LL G+ +TH+
Sbjct: 23 IYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLV 82
Query: 96 SPMPPVYRTNNAVP----PRGVANRRAALAWIRSYVKS-------------GVVYFGDDD 138
P R P PRGV R AL W+R + GVVYF DDD
Sbjct: 83 VLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDD 142
Query: 139 NTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPAKRKFPVDMAGF 198
NT+ +LF+E+R T+ +S++PVGL+G P ++ G V+GF +W R FPVDMAGF
Sbjct: 143 NTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGF 202
Query: 199 AVNVDLILKHPNATMPYKA--GYEEDRFISSLGVKLSDIEPKANNCSEV 245
AV + L+L PNA A G+ E +S L V D+EP+A NC+ V
Sbjct: 203 AVALPLLLDKPNAQFDSTAPRGHLESSLLSHL-VDPKDLEPRAANCTRV 250
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 133/226 (58%), Gaps = 14/226 (6%)
Query: 33 LPIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYT 92
LP I+ +TPTY R Q AELTR+ TL+H+PNLHW+V +D + +P+ + LL G+ YT
Sbjct: 2 LPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYT 61
Query: 93 HIASPMPPVYRTNNAVP----PRGVANRRAALAWIRSYV-----KSGVVYFGDDDNTFDL 143
H+ P Y+ PRG R AL W+R + GVVYF DDDNT+ L
Sbjct: 62 HLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSL 121
Query: 144 KLFDEIRDTKKISMFPVGLIGSYGISSP-VLRKGNVIGFFDSWPAKRKFPVDMAGFAVNV 202
+LF+E+R T+++S++PV +G +P V G V+ + + R F +DMAGFAVN+
Sbjct: 122 ELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVRWKTVFDPHRPFAIDMAGFAVNL 181
Query: 203 DLILKHPNATMPY---KAGYEEDRFISSLGVKLSDIEPKANNCSEV 245
LIL+ A K GY+E + L V L+D+EPKA NC+++
Sbjct: 182 RLILQRSQAYFKLRGVKGGYQESSLLREL-VTLNDLEPKAANCTKI 226
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 149 IRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPAKRKFPVDMAGFAVNVDLILKH 208
+ + + S F G +G + +R GNVIG D W R P + F + +I+++
Sbjct: 167 VTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGD-WALDRIVPDILRAFEQSQPVIIRN 225
Query: 209 PNATMPYKAGYEEDRFISSLGVKL-SDIEPKANNCSEVSENIFKVPSSNVMSQMVTH 264
P+A P++ E L KL +D A + + P N++ QMV +
Sbjct: 226 PHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKY 282
>pdb|1I78|A Chain A, Crystal Structure Of Outer Membrane Protease Ompt From
Escherichia Coli
pdb|1I78|B Chain B, Crystal Structure Of Outer Membrane Protease Ompt From
Escherichia Coli
Length = 297
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 149 IRDTKKISMFPVGLIGSYGISSPVLRKGNVIG--FFDS-----WPAKRKFPVDMAGFAVN 201
I+ + P IG+ G ++ R GN++ + DS W + + P +A
Sbjct: 52 IKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDEARHPDTQLNYANE 111
Query: 202 VDL-----ILKHPNATMPYKAGYEEDRF 224
DL +L PN + AGY+E R+
Sbjct: 112 FDLNIKGWLLNEPNYRLGLMAGYQESRY 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,567,779
Number of Sequences: 62578
Number of extensions: 360745
Number of successful extensions: 708
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 7
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)