Query psy12243
Match_columns 278
No_of_seqs 115 out of 269
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 22:26:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00218 GlcAT-I Beta1,3-glucur 100.0 1E-101 2E-106 696.9 21.1 218 34-254 1-223 (223)
2 KOG1476|consensus 100.0 2E-95 4E-100 679.8 20.0 220 33-257 86-314 (330)
3 PF03360 Glyco_transf_43: Glyc 100.0 4E-91 8.8E-96 623.2 9.3 200 55-254 1-207 (207)
4 PLN02458 transferase, transfer 100.0 2.2E-87 4.7E-92 629.6 20.8 222 29-256 107-342 (346)
5 PF00535 Glycos_transf_2: Glyc 97.8 2.1E-05 4.6E-10 62.2 4.5 91 38-148 2-98 (169)
6 PRK10018 putative glycosyl tra 97.3 0.0021 4.6E-08 59.8 11.0 97 32-148 3-105 (279)
7 cd04186 GT_2_like_c Subfamily 97.3 0.0024 5.3E-08 51.0 10.0 94 38-151 1-97 (166)
8 cd04184 GT2_RfbC_Mx_like Myxoc 97.2 0.0053 1.1E-07 51.5 10.9 98 34-150 1-105 (202)
9 cd02526 GT2_RfbF_like RfbF is 97.2 0.0044 9.4E-08 53.4 10.4 95 38-149 1-96 (237)
10 cd04185 GT_2_like_b Subfamily 97.1 0.0025 5.4E-08 53.9 8.4 171 38-253 1-176 (202)
11 cd06421 CESA_CelA_like CESA_Ce 97.1 0.0031 6.7E-08 54.0 9.0 101 34-151 1-107 (234)
12 PLN02726 dolichyl-phosphate be 97.1 0.0025 5.4E-08 56.4 8.7 104 31-150 6-115 (243)
13 PRK10073 putative glycosyl tra 96.9 0.011 2.3E-07 56.0 10.9 98 33-151 5-108 (328)
14 cd02522 GT_2_like_a GT_2_like_ 96.8 0.007 1.5E-07 51.5 8.4 92 36-149 1-93 (221)
15 cd02511 Beta4Glucosyltransfera 96.8 0.0066 1.4E-07 53.5 8.2 93 36-152 2-95 (229)
16 PRK10063 putative glycosyl tra 96.7 0.013 2.8E-07 53.2 10.1 101 34-152 1-106 (248)
17 cd06423 CESA_like CESA_like is 96.7 0.006 1.3E-07 47.8 6.6 93 38-149 1-99 (180)
18 COG0463 WcaA Glycosyltransfera 96.7 0.008 1.7E-07 46.1 7.1 95 33-148 2-102 (291)
19 cd06433 GT_2_WfgS_like WfgS an 96.6 0.014 3E-07 48.0 8.6 91 38-148 2-95 (202)
20 cd04196 GT_2_like_d Subfamily 96.6 0.0095 2.1E-07 50.0 7.6 96 38-152 2-103 (214)
21 cd04192 GT_2_like_e Subfamily 96.4 0.022 4.7E-07 48.3 8.7 96 38-151 1-105 (229)
22 cd06913 beta3GnTL1_like Beta 1 96.3 0.025 5.5E-07 48.7 8.9 93 38-148 1-104 (219)
23 cd04195 GT2_AmsE_like GT2_AmsE 96.3 0.044 9.6E-07 46.0 9.8 95 38-149 2-101 (201)
24 cd06435 CESA_NdvC_like NdvC_li 96.0 0.062 1.3E-06 46.5 9.4 100 38-150 2-106 (236)
25 cd06439 CESA_like_1 CESA_like_ 95.9 0.065 1.4E-06 46.8 9.5 106 27-150 22-131 (251)
26 cd00761 Glyco_tranf_GTA_type G 95.7 0.067 1.5E-06 40.8 7.8 93 38-149 1-98 (156)
27 cd06434 GT2_HAS Hyaluronan syn 95.7 0.13 2.8E-06 44.2 10.4 96 36-151 2-100 (235)
28 cd06436 GlcNAc-1-P_transferase 95.5 0.096 2.1E-06 44.7 8.9 99 38-151 1-112 (191)
29 cd02525 Succinoglycan_BP_ExoA 95.4 0.12 2.6E-06 44.4 8.9 96 36-150 2-103 (249)
30 TIGR01556 rhamnosyltran L-rham 95.4 0.093 2E-06 47.3 8.6 73 64-150 21-95 (281)
31 cd06442 DPM1_like DPM1_like re 95.2 0.21 4.7E-06 42.4 10.1 95 38-151 1-101 (224)
32 cd06427 CESA_like_2 CESA_like_ 95.2 0.17 3.7E-06 44.5 9.6 98 34-148 1-104 (241)
33 TIGR03469 HonB hopene-associat 94.6 0.22 4.9E-06 47.8 9.4 107 31-149 37-154 (384)
34 cd06438 EpsO_like EpsO protein 94.5 0.4 8.7E-06 40.2 9.7 100 38-150 1-103 (183)
35 cd06437 CESA_CaSu_A2 Cellulose 94.5 0.6 1.3E-05 40.5 11.0 100 34-151 1-110 (232)
36 cd06420 GT2_Chondriotin_Pol_N 94.4 0.41 9E-06 39.3 9.3 97 38-152 1-103 (182)
37 cd02520 Glucosylceramide_synth 94.1 0.17 3.7E-06 43.1 6.6 114 34-166 1-122 (196)
38 PRK13915 putative glucosyl-3-p 94.1 0.36 7.8E-06 45.5 9.3 108 30-149 27-137 (306)
39 PRK11204 N-glycosyltransferase 94.0 0.25 5.5E-06 47.3 8.4 98 31-150 51-156 (420)
40 cd04188 DPG_synthase DPG_synth 94.0 0.16 3.4E-06 43.5 6.3 98 38-152 1-106 (211)
41 TIGR03111 glyc2_xrt_Gpos1 puta 93.7 0.71 1.5E-05 45.3 11.0 98 31-150 46-153 (439)
42 PRK10714 undecaprenyl phosphat 93.6 1.1 2.5E-05 42.4 11.9 101 32-149 4-111 (325)
43 cd04179 DPM_DPG-synthase_like 93.6 0.14 3.1E-06 42.1 5.1 94 38-151 1-102 (185)
44 cd04187 DPM1_like_bac Bacteria 93.5 0.73 1.6E-05 38.2 9.3 97 38-151 1-103 (181)
45 PF13641 Glyco_tranf_2_3: Glyc 92.7 0.38 8.1E-06 41.2 6.5 102 34-150 1-108 (228)
46 PF10111 Glyco_tranf_2_2: Glyc 92.3 1.2 2.6E-05 40.9 9.9 100 38-151 2-111 (281)
47 PTZ00260 dolichyl-phosphate be 91.4 2.4 5.2E-05 40.4 11.0 103 30-149 66-183 (333)
48 cd02510 pp-GalNAc-T pp-GalNAc- 89.9 2.9 6.4E-05 38.1 9.8 94 38-149 2-104 (299)
49 TIGR03030 CelA cellulose synth 89.4 4.5 9.8E-05 42.6 11.9 102 31-148 128-248 (713)
50 TIGR03472 HpnI hopanoid biosyn 87.2 2.3 5E-05 40.7 7.5 104 31-150 38-148 (373)
51 PRK14583 hmsR N-glycosyltransf 86.5 3.5 7.6E-05 40.5 8.5 96 32-149 73-176 (444)
52 PRK11498 bcsA cellulose syntha 78.5 25 0.00053 38.5 11.7 101 30-148 256-359 (852)
53 PRK05799 coproporphyrinogen II 71.6 32 0.0007 33.0 9.6 97 32-129 51-150 (374)
54 PRK08207 coproporphyrinogen II 65.3 47 0.001 33.8 9.6 97 33-129 219-320 (488)
55 PF14773 VIGSSK: Helicase-asso 62.1 5.2 0.00011 30.2 1.6 22 76-97 24-45 (61)
56 PF06858 NOG1: Nucleolar GTP-b 59.0 4.8 0.0001 30.0 1.0 33 116-152 6-44 (58)
57 PRK05628 coproporphyrinogen II 55.4 65 0.0014 31.0 8.3 98 31-129 58-159 (375)
58 PRK10187 trehalose-6-phosphate 52.8 20 0.00043 33.0 4.2 41 110-153 170-213 (266)
59 PRK08446 coproporphyrinogen II 50.0 1.2E+02 0.0026 29.0 9.2 97 31-129 50-149 (350)
60 cd02514 GT13_GLCNAC-TI GT13_GL 46.5 1.1E+02 0.0024 29.9 8.4 109 38-152 4-121 (334)
61 COG1216 Predicted glycosyltran 46.3 88 0.0019 28.9 7.5 102 33-151 2-107 (305)
62 KOG1490|consensus 45.4 21 0.00045 37.3 3.3 39 110-152 227-278 (620)
63 PRK08208 coproporphyrinogen II 42.6 1.1E+02 0.0024 30.2 7.9 97 33-129 92-192 (430)
64 cd04191 Glucan_BSP_ModH Glucan 42.6 2.7E+02 0.0059 25.5 10.0 108 38-156 3-127 (254)
65 PRK08599 coproporphyrinogen II 40.8 1.3E+02 0.0028 28.9 7.9 97 31-130 50-152 (377)
66 COG0683 LivK ABC-type branched 40.0 1.9E+02 0.0042 27.4 8.9 97 55-152 69-171 (366)
67 PF02390 Methyltransf_4: Putat 39.4 34 0.00073 30.3 3.4 108 34-152 42-149 (195)
68 PF14620 YPEB: YpeB sporulatio 38.7 45 0.00098 32.7 4.4 99 79-192 256-361 (361)
69 PRK13347 coproporphyrinogen II 35.4 1.4E+02 0.0029 29.8 7.3 96 33-129 104-203 (453)
70 PRK14716 bacteriophage N4 adso 35.2 4E+02 0.0087 27.4 10.7 110 31-149 63-179 (504)
71 PRK09249 coproporphyrinogen II 34.8 1.9E+02 0.0041 28.8 8.1 97 32-129 102-202 (453)
72 cd00571 UreE UreE urease acces 34.2 1.1E+02 0.0025 25.6 5.7 52 36-96 78-134 (136)
73 PF05679 CHGN: Chondroitin N-a 33.0 2.9E+02 0.0064 28.1 9.3 204 32-259 245-479 (499)
74 cd01462 VWA_YIEM_type VWA YIEM 32.2 1.1E+02 0.0023 24.9 5.1 46 119-164 84-134 (152)
75 PF05116 S6PP: Sucrose-6F-phos 31.7 66 0.0014 29.3 4.1 74 65-146 120-197 (247)
76 TIGR01210 conserved hypothetic 31.4 2.4E+02 0.0053 26.8 8.0 87 49-135 87-176 (313)
77 COG1215 Glycosyltransferases, 31.2 2.3E+02 0.0051 26.7 7.9 99 33-149 53-158 (439)
78 PRK07379 coproporphyrinogen II 31.1 2.3E+02 0.005 27.8 8.0 95 32-129 66-166 (400)
79 TIGR03693 ocin_ThiF_like putat 30.9 44 0.00096 35.5 3.1 134 46-185 107-262 (637)
80 TIGR02471 sucr_syn_bact_C sucr 28.9 41 0.00089 29.7 2.2 31 116-148 160-193 (236)
81 PF11316 Rhamno_transf: Putati 28.8 2.9E+02 0.0062 25.5 7.8 79 62-153 56-139 (234)
82 PRK05904 coproporphyrinogen II 28.4 2E+02 0.0042 27.9 6.9 97 31-129 55-154 (353)
83 TIGR00539 hemN_rel putative ox 28.4 4E+02 0.0086 25.5 9.0 96 31-129 50-151 (360)
84 PLN02580 trehalose-phosphatase 28.1 70 0.0015 31.9 3.9 36 115-152 301-342 (384)
85 TIGR00538 hemN oxygen-independ 28.1 2.7E+02 0.0058 27.7 8.0 98 32-129 102-202 (455)
86 KOG4779|consensus 28.0 23 0.00051 27.7 0.4 33 127-160 35-67 (82)
87 cd00532 MGS-like MGS-like doma 27.9 56 0.0012 26.1 2.6 69 49-139 11-80 (112)
88 PF13768 VWA_3: von Willebrand 26.6 2E+02 0.0044 23.3 5.9 36 127-162 96-133 (155)
89 PRK06256 biotin synthase; Vali 26.5 3.8E+02 0.0083 25.2 8.4 90 34-127 109-200 (336)
90 TIGR01212 radical SAM protein, 26.5 2.9E+02 0.0062 26.1 7.5 87 39-128 86-177 (302)
91 TIGR02026 BchE magnesium-proto 26.1 2.6E+02 0.0055 28.3 7.5 91 33-128 240-337 (497)
92 PF00583 Acetyltransf_1: Acety 25.8 77 0.0017 22.3 2.8 40 110-149 39-80 (83)
93 COG4859 Uncharacterized protei 24.7 13 0.00027 30.5 -1.7 29 112-140 20-53 (105)
94 PF05194 UreE_C: UreE urease a 23.6 2.5E+02 0.0053 21.6 5.5 53 36-97 4-61 (87)
95 PF00072 Response_reg: Respons 23.4 1.4E+02 0.003 22.1 4.0 77 68-164 2-78 (112)
96 PF01762 Galactosyl_T: Galacto 23.3 66 0.0014 27.8 2.4 114 116-237 67-191 (195)
97 TIGR03471 HpnJ hopanoid biosyn 22.6 6.3E+02 0.014 25.1 9.5 94 32-129 245-338 (472)
98 TIGR01485 SPP_plant-cyano sucr 22.5 89 0.0019 27.9 3.2 30 117-148 169-201 (249)
99 TIGR01574 miaB-methiolase tRNA 22.0 3.1E+02 0.0068 27.1 7.1 74 51-126 215-294 (438)
100 COG4092 Predicted glycosyltran 21.9 4.3E+02 0.0094 25.9 7.7 150 64-229 38-214 (346)
101 PRK06582 coproporphyrinogen II 21.5 3.3E+02 0.007 26.8 7.1 95 32-126 62-159 (390)
102 COG1084 Predicted GTPase [Gene 21.0 1.4E+02 0.0031 29.6 4.3 49 107-159 224-285 (346)
103 PF08534 Redoxin: Redoxin; In 20.9 1.7E+02 0.0037 23.4 4.3 63 29-95 25-91 (146)
104 PRK01544 bifunctional N5-gluta 20.6 2.7E+02 0.006 28.4 6.5 71 80-153 409-479 (506)
105 KOG3715|consensus 20.6 77 0.0017 31.1 2.5 42 116-157 122-172 (344)
106 COG1942 Uncharacterized protei 20.5 2.5E+02 0.0054 21.3 4.7 25 51-75 24-49 (69)
107 PF03478 DUF295: Protein of un 20.0 41 0.00089 23.6 0.4 17 130-146 33-52 (54)
No 1
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=100.00 E-value=1.1e-101 Score=696.88 Aligned_cols=218 Identities=45% Similarity=0.852 Sum_probs=210.4
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcch
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGV 113 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~ 113 (278)
|+||+|||||+|++|+||||||||||||||+||||||||++.+|++|+++|++|||+|+||++++|..+ ...++||+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lVp~l~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~~~~~---~~~~~rg~ 77 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLVPPLHWIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDP---TWLKPRGV 77 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcCCceEEEEEeCCCCCCHHHHHHHHHcCCceEEeccCCCCCc---ccCCcccH
Confidence 789999999999999999999999999999999999999998999999999999999999999988532 23469999
Q ss_pred HHHHHHHHHHHHh---CCCcEEEEecCCCccchhhhHHhhccceeeeeeeeeeeccccccceeeCCeeeeeeccCCCCCC
Q psy12243 114 ANRRAALAWIRSY---VKSGVVYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPAKRK 190 (278)
Q Consensus 114 ~qRN~AL~~Ir~~---~~~GVVyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg~~~~EgPv~~~gkVvgw~~~w~~~R~ 190 (278)
+|||.||+|||+| +++||||||||||+||++||||||+||+||+||||++|++.+|||+|++|||+|||+.|.++||
T Consensus 78 ~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~i~~vg~WPVglvg~~~vegP~c~~gkV~gw~~~w~~~R~ 157 (223)
T cd00218 78 EQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRKIKRVGVWPVGLVGGLRVEGPVCENGKVVGWHTAWKPERP 157 (223)
T ss_pred HHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhccCeeeEEEeeeecCceeeccEeeCCeEeEEecCCCCCCC
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcccCCCccCCC--CCCcchhhhhHhhcCCCCCCcccCCCCCEEEEeecCCCC
Q psy12243 191 FPVDMAGFAVNVDLILKHPNATMPY--KAGYEEDRFISSLGVKLSDIEPKANNCSEVSENIFKVPS 254 (278)
Q Consensus 191 fpiDMAGFAvN~~lL~~~p~~~~~~--~~G~~Es~fL~~L~~~~~~lEp~a~~c~~VlVWHtrte~ 254 (278)
|||||||||||+++||++|+|.|+. ++|+||++||+||+.++++|||+|+||++|||||||||+
T Consensus 158 f~idmAGFA~n~~ll~~~~~~~~~~~~~~g~~es~fl~~L~~~~~~~Epl~~~c~~VlvWhtrte~ 223 (223)
T cd00218 158 FPIDMAGFAFNSKLLWDPPRAVFPYSAKRGYQESSFLEQLVLDRKELEPLANNCSKVLVWHTRTEK 223 (223)
T ss_pred CcceeeeEEEehhhhccCccccCCCCCCCcchhHHhHHHHcccHHhcccccCCCCEEEEEeeecCC
Confidence 9999999999999999999999986 799999999999999999999999999999999999986
No 2
>KOG1476|consensus
Probab=100.00 E-value=2e-95 Score=679.83 Aligned_cols=220 Identities=46% Similarity=0.818 Sum_probs=211.7
Q ss_pred CCeEEEEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcc
Q psy12243 33 LPIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 33 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
.|+||||||||.|++|+||||||||||+||||||||||||++..+|+|+++|++|||+|+||++++|..|+. .||
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~V~nLhWIVVEd~~~~~p~v~~~L~rtgl~ythl~~~t~~~~~~-----~rg 160 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRLVPNLHWIVVEDGEGTTPEVSGILRRTGLPYTHLVHKTPMGYKA-----RRG 160 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhhcCCeeEEEEecCCCCCHHHHHHHHHcCCceEEEeccCCCCCcc-----ccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999887765 489
Q ss_pred hHHHHHHHHHHH-----HhCCCcEEEEecCCCccchhhhHHhhccceeeeeeeeeeeccccccceeeCCeeeeeeccCCC
Q psy12243 113 VANRRAALAWIR-----SYVKSGVVYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPA 187 (278)
Q Consensus 113 ~~qRN~AL~~Ir-----~~~~~GVVyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg~~~~EgPv~~~gkVvgw~~~w~~ 187 (278)
|+|||.||+||| +++++||||||||||+||+|||+|||+|+++|+||||++||+.||||+|++|||+|||+.|.+
T Consensus 161 ~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~eiR~v~~~gvWpVg~vgg~~vE~P~v~~~kvvg~~~~w~~ 240 (330)
T KOG1476|consen 161 WEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEEIRNVKKFGVWPVGLVGGARVEGPVVNNGKVVGWHTRWEP 240 (330)
T ss_pred hhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHHHhccceeeeEeeeecCCeeeecceeccCeeEEEEecccc
Confidence 999999999999 669999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchhhhhhhcccCCCccCC----CCCCcchhhhhHhhcCCCCCCcccCCCCCEEEEeecCCCCccc
Q psy12243 188 KRKFPVDMAGFAVNVDLILKHPNATMP----YKAGYEEDRFISSLGVKLSDIEPKANNCSEVSENIFKVPSSNV 257 (278)
Q Consensus 188 ~R~fpiDMAGFAvN~~lL~~~p~~~~~----~~~G~~Es~fL~~L~~~~~~lEp~a~~c~~VlVWHtrte~p~~ 257 (278)
.|||||||||||||+++||+++++.|. .++||+|++||+||+.|.++|||+|+||++|||||||||+|.+
T Consensus 241 ~r~f~vdmaGFAvNl~lll~~~~a~f~~~~~~~~G~~E~~~l~~l~~d~~~iEp~~~~c~kILvWhtrte~~~~ 314 (330)
T KOG1476|consen 241 ERPFAVDMAGFAVNLKLLLDPSNAVFKPLCPRGEGYQETCLLEQLGLDLSDIEPLAYECTKILVWHTRTEKPAD 314 (330)
T ss_pred CCCCccchhhheehhhhhccCccccccccCcCCCCCcchhHHHHhcCCHHHccccccccceEEEEEecccCccc
Confidence 999999999999999999998887763 3569999999999999999999999999999999999999975
No 3
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=100.00 E-value=4e-91 Score=623.22 Aligned_cols=200 Identities=46% Similarity=0.881 Sum_probs=157.7
Q ss_pred HhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHH---HhCCCcE
Q psy12243 55 LGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIR---SYVKSGV 131 (278)
Q Consensus 55 La~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir---~~~~~GV 131 (278)
|||||||||+|||||||||+.++++|+++|++|||+|+||+++||.+|+.+...++||++|||+||+||| +++.+||
T Consensus 1 La~TL~~V~~l~WIVVEd~~~~~~~v~~lL~~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GV 80 (207)
T PF03360_consen 1 LAHTLRHVPPLHWIVVEDSEETTPLVARLLRRSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGV 80 (207)
T ss_dssp HHHHHTTSSSEEEEEEESSSS--HHHHHHHHHHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EE
T ss_pred CchhhhcCCceEEEEEeCCCCCCHHHHHHHHHcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcE
Confidence 7999999999999999999999999999999999999999999999998666667999999999999999 8899999
Q ss_pred EEEecCCCccchhhhHHhhccceeeeeeeeeeeccccccceeeCCeeeeeeccCCCCCCCCccccchhhhhhhcccCCCc
Q psy12243 132 VYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPAKRKFPVDMAGFAVNVDLILKHPNA 211 (278)
Q Consensus 132 VyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg~~~~EgPv~~~gkVvgw~~~w~~~R~fpiDMAGFAvN~~lL~~~p~~ 211 (278)
|||||||||||+|||||||+||+|||||||++|++.+|||+|++|+|+|||+.|.++|||||||||||||+++||++|+|
T Consensus 81 VyFaDDdNtYdl~LF~emR~~k~vgvWPVG~vg~~~~EgP~~~~~~Vvgw~~~~~~~R~fpiDmAGFAvn~~ll~~~~~~ 160 (207)
T PF03360_consen 81 VYFADDDNTYDLRLFDEMRKTKRVGVWPVGLVGGLRVEGPVCNNGKVVGWHTSWKPDRPFPIDMAGFAVNSRLLWDRPEA 160 (207)
T ss_dssp EEE--TTSEE-HHHHHHHCT-SSEEE--EEEETTEEEEEEEEETTEEEEEE-SSSTTSTT---GGGEEEEHHHHHHSTT-
T ss_pred EEECCCCCeeeHHHHHHHHhhhcccceeeceeccceeeccEEeCCEEEEEEcccCCCCCccccceeeeeehHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CC--CcchhhhhHhhcCCCCCCcccCCCCCEEEEeecCCCC
Q psy12243 212 TMPY--KA--GYEEDRFISSLGVKLSDIEPKANNCSEVSENIFKVPS 254 (278)
Q Consensus 212 ~~~~--~~--G~~Es~fL~~L~~~~~~lEp~a~~c~~VlVWHtrte~ 254 (278)
.|++ +. |++|++||++|++++++|||+|+||++||||||||||
T Consensus 161 ~~~~~~~~~~G~~Es~fL~~l~~~~~~lEp~a~~c~~VlVWHtrtek 207 (207)
T PF03360_consen 161 IFDYSAPRGEGYQESSFLSQLVLDREDLEPLADNCSKVLVWHTRTEK 207 (207)
T ss_dssp ---TTSSTT-TGHHHHHHHTT---GGGEEE-HHHHTS--EE---B--
T ss_pred cccccCCCCCCcchhHHHHHhccChhhcccccCCCCEEEEeeeeccC
Confidence 9976 33 9999999999999999999999999999999999997
No 4
>PLN02458 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.2e-87 Score=629.63 Aligned_cols=222 Identities=25% Similarity=0.396 Sum_probs=203.2
Q ss_pred CCCCCCeEEEEccCCC-cccchHHHHHHhhhhcCCC-CeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCC
Q psy12243 29 VVKDLPIIYFITPTYP-RREQVAELTRLGQTLMHIP-NLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNN 106 (278)
Q Consensus 29 ~~~~~p~I~vVTPTy~-R~~Q~a~LtRLa~TL~~Vp-~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~ 106 (278)
+..+.++||||||||. |++|+||||||||||+||| +||||||||++ .+++|+++|++|||+|+||++++ +++.
T Consensus 107 ~~~~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIVVEd~~-~t~~va~lLrrsGl~y~HL~~k~--~~~~-- 181 (346)
T PLN02458 107 KLAPRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIVVEGQS-DSEEVSEMLRKTGIMYRHLVFKE--NFTD-- 181 (346)
T ss_pred CCCCCceEEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEEEeCCC-CCHHHHHHHHHcCCceEEeccCC--CCCC--
Confidence 4567899999999998 7999999999999999998 89999999998 58889999999999999999975 3432
Q ss_pred CCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhccceeeeeeeeeee----ccccccceeeCCeeeeee
Q psy12243 107 AVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIG----SYGISSPVLRKGNVIGFF 182 (278)
Q Consensus 107 ~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg----~~~~EgPv~~~gkVvgw~ 182 (278)
...|+++|||+||+|||+|+++||||||||||+||++||||||+||+||+||||++| ++.+|||+|++|||+|||
T Consensus 182 -~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ik~vG~WPVGlvg~~~~~~~vEGPvc~~gkVvGWh 260 (346)
T PLN02458 182 -PEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRDIEVFGTWPMALLSANRNKVIIEGPVCDSSQVIGWH 260 (346)
T ss_pred -ccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhcCceeeecceEEeecccccceeECceecCCeEeEEe
Confidence 225689999999999999999999999999999999999999999999999999999 588999999999999999
Q ss_pred ccC---CCCCCCCccccchhhhhhhcccCCCccCC--CCCCcchh-hhhHhh-cCCCCCCcccC-CCCCEEEEeecCCCC
Q psy12243 183 DSW---PAKRKFPVDMAGFAVNVDLILKHPNATMP--YKAGYEED-RFISSL-GVKLSDIEPKA-NNCSEVSENIFKVPS 254 (278)
Q Consensus 183 ~~w---~~~R~fpiDMAGFAvN~~lL~~~p~~~~~--~~~G~~Es-~fL~~L-~~~~~~lEp~a-~~c~~VlVWHtrte~ 254 (278)
+.| .++|+|||||||||||+++||++.+|..+ .++|+||| .|++|| +.|+.++|+++ +||++|||||++.+.
T Consensus 261 t~w~~~~~~RrfpIDMAGFAfNs~lLwdP~rw~Rp~~~~~~~qeS~~Fv~ql~~~de~q~egipa~~CskVmvWhl~~~~ 340 (346)
T PLN02458 261 LKKMNNETETRPPIHISSFAFNSSILWDPERWGRPSSVQGTSQNSIKFVKQVALEDETKLKGIPPEDCSKIMLWRLNFPT 340 (346)
T ss_pred ccccccCCCCCCCcceeeeeeehhhhcChhhhCCCCCCCccchHHHHHHHHHhhccccccccCCcCCCCEEEEEEeccCC
Confidence 999 48899999999999999999998887754 47999999 999999 46788899885 799999999999876
Q ss_pred cc
Q psy12243 255 SN 256 (278)
Q Consensus 255 p~ 256 (278)
..
T Consensus 341 ~~ 342 (346)
T PLN02458 341 RT 342 (346)
T ss_pred cc
Confidence 64
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.84 E-value=2.1e-05 Score=62.19 Aligned_cols=91 Identities=25% Similarity=0.392 Sum_probs=58.9
Q ss_pred EEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccC---CCceEeeccCCCccccCCCCCCCcc
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKF---GIPYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~s---gl~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
||+|||.++. .|.++-++|+. -++...|||+|+. ++.+.++|++. +..++.+..+. ..|
T Consensus 2 vvip~~n~~~---~l~~~l~sl~~q~~~~~eiivvdd~s--~d~~~~~~~~~~~~~~~i~~i~~~~-----------n~g 65 (169)
T PF00535_consen 2 VVIPTYNEAE---YLERTLESLLKQTDPDFEIIVVDDGS--TDETEEILEEYAESDPNIRYIRNPE-----------NLG 65 (169)
T ss_dssp EEEEESS-TT---THHHHHHHHHHHSGCEEEEEEEECS---SSSHHHHHHHHHCCSTTEEEEEHCC-----------CSH
T ss_pred EEEEeeCCHH---HHHHHHHHHhhccCCCEEEEEecccc--ccccccccccccccccccccccccc-----------ccc
Confidence 7999999944 44555555554 3689999999998 33455555554 55555554331 113
Q ss_pred -hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 113 -VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 113 -~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
-.++|.|++..+.. .|.|.|||..++...+++
T Consensus 66 ~~~~~n~~~~~a~~~----~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 66 FSAARNRGIKHAKGE----YILFLDDDDIISPDWLEE 98 (169)
T ss_dssp HHHHHHHHHHH--SS----EEEEEETTEEE-TTHHHH
T ss_pred cccccccccccccee----EEEEeCCCceEcHHHHHH
Confidence 37799999886543 999999999999886665
No 6
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.34 E-value=0.0021 Score=59.80 Aligned_cols=97 Identities=23% Similarity=0.320 Sum_probs=63.9
Q ss_pred CCCeEEEEccCCCcccchHH-HHH-HhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccC---CCceEeeccCCCccccCCC
Q psy12243 32 DLPIIYFITPTYPRREQVAE-LTR-LGQTLMHIPNLHWIVADDTLQCSPMISALLPKF---GIPYTHIASPMPPVYRTNN 106 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~-LtR-La~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~s---gl~y~HL~~~~p~~~~~~~ 106 (278)
..|.|-||+|||.+..-... |.. ++|| .+++.+|||+|+.+....+.+++++. .+.+.+..
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~Qt---~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~----------- 68 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLRQD---YSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND----------- 68 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCC---CCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC-----------
Confidence 47899999999999764322 111 3343 47899999999986324455665542 23222221
Q ss_pred CCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 107 AVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 107 ~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
...|. ..||.|++. ...-.|.|.|+|..+..+.+++
T Consensus 69 --~n~G~~~a~N~gi~~----a~g~~I~~lDaDD~~~p~~l~~ 105 (279)
T PRK10018 69 --INSGACAVRNQAIML----AQGEYITGIDDDDEWTPNRLSV 105 (279)
T ss_pred --CCCCHHHHHHHHHHH----cCCCEEEEECCCCCCCccHHHH
Confidence 13465 569999876 2345888999999999887665
No 7
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.34 E-value=0.0024 Score=50.96 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=60.7
Q ss_pred EEccCCCcccchHHHHHHhhhhcCC--CCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcch-H
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMHI--PNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGV-A 114 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~V--p~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~-~ 114 (278)
||.|||.|+ ..|.++-++|... ++..-|||+|+.+ +.+.+.+++..-..+.+..+ . ..|. .
T Consensus 1 vii~~~~~~---~~l~~~l~sl~~~~~~~~~iiivdd~s~--~~~~~~~~~~~~~~~~~~~~--~---------~~g~~~ 64 (166)
T cd04186 1 IIIVNYNSL---EYLKACLDSLLAQTYPDFEVIVVDNAST--DGSVELLRELFPEVRLIRNG--E---------NLGFGA 64 (166)
T ss_pred CEEEecCCH---HHHHHHHHHHHhccCCCeEEEEEECCCC--chHHHHHHHhCCCeEEEecC--C---------CcChHH
Confidence 578999884 3345555555433 5788899999875 33555555543222222111 1 2233 6
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 115 NRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 115 qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
.||.|++.. ....|.|.|||..++...+++|-+
T Consensus 65 a~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 65 GNNQGIREA----KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred HhhHHHhhC----CCCEEEEECCCcEECccHHHHHHH
Confidence 799999886 456889999999999998887654
No 8
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.19 E-value=0.0053 Score=51.46 Aligned_cols=98 Identities=20% Similarity=0.298 Sum_probs=60.9
Q ss_pred CeEEEEccCCCcc-cchHHHHHHhhhhc--CCCCeEEEEEeCCCCCCHHHHHhhcc---CCCceEeeccCCCccccCCCC
Q psy12243 34 PIIYFITPTYPRR-EQVAELTRLGQTLM--HIPNLHWIVADDTLQCSPMISALLPK---FGIPYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 34 p~I~vVTPTy~R~-~Q~a~LtRLa~TL~--~Vp~l~WIVVEd~~~~s~~v~~lL~~---sgl~y~HL~~~~p~~~~~~~~ 107 (278)
|.|.||.|||.+. ... .+.-+.|. ..+++..|||+|+.. .+.+..+++. ..-..+.+..+
T Consensus 1 p~vsiii~~~n~~~~~l---~~~l~sl~~q~~~~~eiivvd~gs~-d~~~~~~~~~~~~~~~~~~~~~~~---------- 66 (202)
T cd04184 1 PLISIVMPVYNTPEKYL---REAIESVRAQTYPNWELCIADDAST-DPEVKRVLKKYAAQDPRIKVVFRE---------- 66 (202)
T ss_pred CeEEEEEecccCcHHHH---HHHHHHHHhCcCCCeEEEEEeCCCC-ChHHHHHHHHHHhcCCCEEEEEcc----------
Confidence 5789999999998 333 33222332 246789999999975 3334444442 11111111111
Q ss_pred CCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 108 VPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 108 ~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
...|. ..||.|++..+ .=.|.|.|+|..++...++++.
T Consensus 67 -~~~g~~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 67 -ENGGISAATNSALELAT----GEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred -cCCCHHHHHHHHHHhhc----CCEEEEECCCCcCChHHHHHHH
Confidence 12343 67999998742 3477899999999998888744
No 9
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.17 E-value=0.0044 Score=53.42 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=58.3
Q ss_pred EEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcc-hHHH
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRG-VANR 116 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg-~~qR 116 (278)
+|.|||.+.. ..|.+.-+.|..- ....|||+|+...+..........++.+.+.. . .+| ...|
T Consensus 1 ~vI~~yn~~~--~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~----~---------n~G~~~a~ 64 (237)
T cd02526 1 AVVVTYNPDL--SKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRLNSEKIELIHLG----E---------NLGIAKAL 64 (237)
T ss_pred CEEEEecCCH--HHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhccCCcEEEEECC----C---------ceehHHhh
Confidence 4678898762 2233333333321 46789999987644333222223444433321 1 224 3679
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 117 RAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 117 N~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
|.|++..+..+ .=.|.|.|+|...+...+++|
T Consensus 65 N~g~~~a~~~~-~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 65 NIGIKAALENG-ADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred hHHHHHHHhCC-CCEEEEECCCCCcCHhHHHHH
Confidence 99999876542 347889999999999999998
No 10
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.14 E-value=0.0025 Score=53.85 Aligned_cols=171 Identities=12% Similarity=0.080 Sum_probs=94.5
Q ss_pred EEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccCCCce--EeeccCCCccccCCCCCCCcch
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKFGIPY--THIASPMPPVYRTNNAVPPRGV 113 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y--~HL~~~~p~~~~~~~~~~~rg~ 113 (278)
||+|||.+.....+ +-+.|.. .|+...|||+|+.+ +.+.+++++.+-.+ +++..+ ...|.
T Consensus 1 viI~~~n~~~~l~~---~l~sl~~q~~~~~eiiivD~~s~--d~t~~~~~~~~~~~~i~~~~~~-----------~n~g~ 64 (202)
T cd04185 1 AVVVTYNRLDLLKE---CLDALLAQTRPPDHIIVIDNAST--DGTAEWLTSLGDLDNIVYLRLP-----------ENLGG 64 (202)
T ss_pred CEEEeeCCHHHHHH---HHHHHHhccCCCceEEEEECCCC--cchHHHHHHhcCCCceEEEECc-----------cccch
Confidence 68899998854443 3333322 34678899999874 34666776655443 333322 12343
Q ss_pred -HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhccceeeeeeeeeeeccccccceeeCCeeeeeeccCCCCCCCC
Q psy12243 114 -ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPAKRKFP 192 (278)
Q Consensus 114 -~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg~~~~EgPv~~~gkVvgw~~~w~~~R~fp 192 (278)
..+|.|+++.. ....-.|.|.|+|..++...++++-+.-. -=-++++++..+.. +|
T Consensus 65 ~~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~----~~---------------- 121 (202)
T cd04185 65 AGGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYAD--KDNPQFLAPLVLDP----DG---------------- 121 (202)
T ss_pred hhHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHh--cCCceEecceeEcC----CC----------------
Confidence 56899998876 32233778889999999999998664321 00123333322111 11
Q ss_pred ccccchhhhhhhcccCCCccCCCCCCcchhhhhHhhcCCCCCCcccCCCCCEEEEeecCCC
Q psy12243 193 VDMAGFAVNVDLILKHPNATMPYKAGYEEDRFISSLGVKLSDIEPKANNCSEVSENIFKVP 253 (278)
Q Consensus 193 iDMAGFAvN~~lL~~~p~~~~~~~~G~~Es~fL~~L~~~~~~lEp~a~~c~~VlVWHtrte 253 (278)
-..|+.+..+++.+-.-....+....++.+|-..+...-.. . .|..+.+-|..-.
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~----i-~~~~~~~~h~~~~ 176 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPG----I-YVPDAVVVHKTAI 176 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCc----E-EecceEEEEcccc
Confidence 23567777777754321111122233455666655422111 2 4677777777543
No 11
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=97.13 E-value=0.0031 Score=53.97 Aligned_cols=101 Identities=22% Similarity=0.294 Sum_probs=64.8
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcC--CCC--eEEEEEeCCCCCCHHHHHhhccCCCce--EeeccCCCccccCCCC
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMH--IPN--LHWIVADDTLQCSPMISALLPKFGIPY--THIASPMPPVYRTNNA 107 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~--l~WIVVEd~~~~s~~v~~lL~~sgl~y--~HL~~~~p~~~~~~~~ 107 (278)
|.|-||.|||.+.. ..|.+.-+.|.. .|+ +..|||+|+. ++.+.+++++.+..+ ..+... . +
T Consensus 1 p~vsviip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~--~------~ 68 (234)
T cd06421 1 PTVDVFIPTYNEPL--EIVRKTLRAALAIDYPHDKLRVYVLDDGR--RPELRALAAELGVEYGYRYLTRP--D------N 68 (234)
T ss_pred CceEEEEecCCCcH--HHHHHHHHHHHhcCCCcccEEEEEEcCCC--chhHHHHHHHhhcccCceEEEeC--C------C
Confidence 67899999999842 123333333332 355 8999999986 467888888876543 112111 0 1
Q ss_pred CCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 108 VPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 108 ~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
. .-...++|.|++.. ..=+|.|.|+|...+...+++|-+
T Consensus 69 ~-~~~~~~~n~~~~~a----~~d~i~~lD~D~~~~~~~l~~l~~ 107 (234)
T cd06421 69 R-HAKAGNLNNALAHT----TGDFVAILDADHVPTPDFLRRTLG 107 (234)
T ss_pred C-CCcHHHHHHHHHhC----CCCEEEEEccccCcCccHHHHHHH
Confidence 0 01235689998764 234889999999999888887543
No 12
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=97.13 E-value=0.0025 Score=56.41 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=68.3
Q ss_pred CCCCeEEEEccCCCcccchHHHH-HHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCC----CceEeeccCCCccccCC
Q psy12243 31 KDLPIIYFITPTYPRREQVAELT-RLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFG----IPYTHIASPMPPVYRTN 105 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~Lt-RLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sg----l~y~HL~~~~p~~~~~~ 105 (278)
...|.|.||.|+|......+.+. .+.+.+...+++..|||+|+++ +.+.+++++.. ....++... +
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~--D~t~~i~~~~~~~~~~~~v~~~~~-~------ 76 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVYGEDRILLRPR-P------ 76 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC--CCHHHHHHHHHHhcCCCcEEEEec-C------
Confidence 45788999999999887766544 3555555566899999999874 34556665532 112222111 1
Q ss_pred CCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 106 NAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 106 ~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
...|. ..+|.|++.. ..-.|.|.|+|..++.+.+++|-
T Consensus 77 ---~n~G~~~a~n~g~~~a----~g~~i~~lD~D~~~~~~~l~~l~ 115 (243)
T PLN02726 77 ---GKLGLGTAYIHGLKHA----SGDFVVIMDADLSHHPKYLPSFI 115 (243)
T ss_pred ---CCCCHHHHHHHHHHHc----CCCEEEEEcCCCCCCHHHHHHHH
Confidence 12243 4588888753 23488899999999998888743
No 13
>PRK10073 putative glycosyl transferase; Provisional
Probab=96.86 E-value=0.011 Score=55.99 Aligned_cols=98 Identities=17% Similarity=0.282 Sum_probs=63.9
Q ss_pred CCeEEEEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccCC--C-ceEeeccCCCccccCCCC
Q psy12243 33 LPIIYFITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKFG--I-PYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 33 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~sg--l-~y~HL~~~~p~~~~~~~~ 107 (278)
.|.|-||.|+|.+. ..|.+.-++|.. .+++-.|||+|+.+ +.+.+++++.. - ....+. .
T Consensus 5 ~p~vSVIIP~yN~~---~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt--D~t~~i~~~~~~~~~~i~vi~-~---------- 68 (328)
T PRK10073 5 TPKLSIIIPLYNAG---KDFRAFMESLIAQTWTALEIIIVNDGST--DNSVEIAKHYAENYPHVRLLH-Q---------- 68 (328)
T ss_pred CCeEEEEEeccCCH---HHHHHHHHHHHhCCCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEE-C----------
Confidence 58899999999986 345554444332 36899999999975 33444554321 1 112221 1
Q ss_pred CCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 108 VPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 108 ~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
.+.|. ..||.||+.. ..-.|.|.|+|..++...+++|-.
T Consensus 69 -~n~G~~~arN~gl~~a----~g~yi~flD~DD~~~p~~l~~l~~ 108 (328)
T PRK10073 69 -ANAGVSVARNTGLAVA----TGKYVAFPDADDVVYPTMYETLMT 108 (328)
T ss_pred -CCCChHHHHHHHHHhC----CCCEEEEECCCCccChhHHHHHHH
Confidence 02354 5699998763 335889999999999998887543
No 14
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.81 E-value=0.007 Score=51.46 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=60.6
Q ss_pred EEEEccCCCcccchHH-HHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchH
Q psy12243 36 IYFITPTYPRREQVAE-LTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVA 114 (278)
Q Consensus 36 I~vVTPTy~R~~Q~a~-LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~ 114 (278)
|-||.|||.++....+ |-.|.+-. -+++..|||+|+.+ +.+.+++++.++ .++... .+ .| .
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~--~~~~evivvdd~s~--d~~~~~~~~~~~--~~~~~~--------~g---~~-~ 62 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLN--PLPLEIIVVDGGST--DGTVAIARSAGV--VVISSP--------KG---RA-R 62 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhcc--CCCcEEEEEeCCCC--ccHHHHHhcCCe--EEEeCC--------cC---HH-H
Confidence 3588999999764433 22332211 16788999999874 456677777333 333211 01 12 5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 115 NRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 115 qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
.+|.|++..+ .-+|.|.|+|..++...+++|
T Consensus 63 a~n~g~~~a~----~~~i~~~D~D~~~~~~~l~~l 93 (221)
T cd02522 63 QMNAGAAAAR----GDWLLFLHADTRLPPDWDAAI 93 (221)
T ss_pred HHHHHHHhcc----CCEEEEEcCCCCCChhHHHHH
Confidence 6899987743 468899999999999999985
No 15
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.77 E-value=0.0066 Score=53.46 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=65.0
Q ss_pred EEEEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcch-H
Q psy12243 36 IYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGV-A 114 (278)
Q Consensus 36 I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~-~ 114 (278)
|-+|.|||.... .|.+.-++|.... -.-|||+|+.+ +.+.+++++.|+...|. + ..|. .
T Consensus 2 isvii~~~Ne~~---~l~~~l~sl~~~~-~eiivvD~gSt--D~t~~i~~~~~~~v~~~--~------------~~g~~~ 61 (229)
T cd02511 2 LSVVIITKNEER---NIERCLESVKWAV-DEIIVVDSGST--DRTVEIAKEYGAKVYQR--W------------WDGFGA 61 (229)
T ss_pred EEEEEEeCCcHH---HHHHHHHHHhccc-CEEEEEeCCCC--ccHHHHHHHcCCEEEEC--C------------CCChHH
Confidence 678999999764 3333333333221 36789999864 55788898888876665 2 1133 7
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhcc
Q psy12243 115 NRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 115 qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
+||.|++..+ .+ .|.|.|.|..++.++.+++.+.
T Consensus 62 ~~n~~~~~a~---~d-~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 62 QRNFALELAT---ND-WVLSLDADERLTPELADEILAL 95 (229)
T ss_pred HHHHHHHhCC---CC-EEEEEeCCcCcCHHHHHHHHHH
Confidence 8999987632 23 8899999999999999987653
No 16
>PRK10063 putative glycosyl transferase; Provisional
Probab=96.74 E-value=0.013 Score=53.21 Aligned_cols=101 Identities=15% Similarity=0.238 Sum_probs=61.2
Q ss_pred CeEEEEccCCCcccchHH-HHHHhhhhc-CCCCeEEEEEeCCCCCCHHHHHhhccCCC--ceEeeccCCCccccCCCCCC
Q psy12243 34 PIIYFITPTYPRREQVAE-LTRLGQTLM-HIPNLHWIVADDTLQCSPMISALLPKFGI--PYTHIASPMPPVYRTNNAVP 109 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~-LtRLa~TL~-~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl--~y~HL~~~~p~~~~~~~~~~ 109 (278)
|.|-||+|||.......+ |..+.+... .-+++-+|||+|+.+ +-+.+++++.+- ...++..+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgSt--D~t~~i~~~~~~~~~i~~i~~~------------ 66 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSN--DGTREFLENLNGIFNLRFVSEP------------ 66 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCc--ccHHHHHHHhcccCCEEEEECC------------
Confidence 578899999988654432 223332212 235799999999974 557777777532 22222211
Q ss_pred Ccch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhcc
Q psy12243 110 PRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 110 ~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
..|. ..+|.|++.. ..=.|.|.|+|..+....++.+++.
T Consensus 67 ~~G~~~A~N~Gi~~a----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 67 DNGIYDAMNKGIAMA----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 2254 5699998863 2237888897777766654444433
No 17
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=96.69 E-value=0.006 Score=47.82 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=58.4
Q ss_pred EEccCCCcccchHHHHHHhhhhc-CC-CCeEEEEEeCCCCCCHHHHHhhccCCCc---eEeeccCCCccccCCCCCCCcc
Q psy12243 38 FITPTYPRREQVAELTRLGQTLM-HI-PNLHWIVADDTLQCSPMISALLPKFGIP---YTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~-~V-p~l~WIVVEd~~~~s~~v~~lL~~sgl~---y~HL~~~~p~~~~~~~~~~~rg 112 (278)
||-|||.++.+ |.++-++|. +. ++..-|||+|+.. +.+.+++++..-. ..++-.. +. ..|
T Consensus 1 Viip~~n~~~~---l~~~l~sl~~q~~~~~~iivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~-~~---------~~g 65 (180)
T cd06423 1 IIVPAYNEEAV---IERTIESLLALDYPKLEVIVVDDGST--DDTLEILEELAALYIRRVLVVRD-KE---------NGG 65 (180)
T ss_pred CeecccChHHH---HHHHHHHHHhCCCCceEEEEEeCCCc--cchHHHHHHHhccccceEEEEEe-cc---------cCC
Confidence 57799999843 333333332 22 6788899999875 3455555554332 1221111 00 123
Q ss_pred -hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 113 -VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 113 -~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
..+||.|++.. ..-.|.|.|+|..+....+++|
T Consensus 66 ~~~~~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 66 KAGALNAGLRHA----KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred chHHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 27799999886 3457888999999999999988
No 18
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.008 Score=46.08 Aligned_cols=95 Identities=24% Similarity=0.369 Sum_probs=56.3
Q ss_pred CCeEEEEccCCCcccchHHHHH--HhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCc---eEeeccCCCccccCCCC
Q psy12243 33 LPIIYFITPTYPRREQVAELTR--LGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIP---YTHIASPMPPVYRTNNA 107 (278)
Q Consensus 33 ~p~I~vVTPTy~R~~Q~a~LtR--La~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~---y~HL~~~~p~~~~~~~~ 107 (278)
.|.|-||.|||.+........+ +.||. ++...|||+|+.+ +.+.+++++-+.. ..+...+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~---~~~eiivvddgs~--d~t~~~~~~~~~~~~~~~~~~~~---------- 66 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTY---KDFEIIVVDDGST--DGTTEIAIEYGAKDVRVIRLINE---------- 66 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhh---cceEEEEEeCCCC--CChHHHHHHHhhhcceEEEeecc----------
Confidence 5789999999999832222111 22232 3367899999875 3344444444432 2222211
Q ss_pred CCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 108 VPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 108 ~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
...|. ..||.|+.+... -.|.|.|.|+. ....+..
T Consensus 67 -~~~g~~~~~~~~~~~~~~----~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 67 -RNGGLGAARNAGLEYARG----DYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred -cCCChHHHHHhhHHhccC----CEEEEEccCCC-CCHHHHH
Confidence 12233 679999888644 57788888888 6666555
No 19
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.61 E-value=0.014 Score=47.96 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=55.7
Q ss_pred EEccCCCcccchH-HHHHH-hhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcch-H
Q psy12243 38 FITPTYPRREQVA-ELTRL-GQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGV-A 114 (278)
Q Consensus 38 vVTPTy~R~~Q~a-~LtRL-a~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~-~ 114 (278)
||.|||.+..... -|..| +|+ .+++..|||+|+.. +.+.++|++-+-...++.... ..|. .
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~---~~~~evivvDd~s~--d~~~~~~~~~~~~~~~~~~~~-----------~~g~~~ 65 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQT---YPNIEYIVIDGGST--DGTVDIIKKYEDKITYWISEP-----------DKGIYD 65 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCC---CCCceEEEEeCCCC--ccHHHHHHHhHhhcEEEEecC-----------CcCHHH
Confidence 6889999874332 22333 333 36689999999875 345666665433212221110 1233 7
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 115 NRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 115 qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
.||.||+..+ .-+|.|.|+|..++..-..+
T Consensus 66 a~n~~~~~a~----~~~v~~ld~D~~~~~~~~~~ 95 (202)
T cd06433 66 AMNKGIALAT----GDIIGFLNSDDTLLPGALLA 95 (202)
T ss_pred HHHHHHHHcC----CCEEEEeCCCcccCchHHHH
Confidence 7999998642 34788999999887765555
No 20
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.60 E-value=0.0095 Score=49.98 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=56.8
Q ss_pred EEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccCCCce---EeeccCCCccccCCCCCCCcc
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKFGIPY---THIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y---~HL~~~~p~~~~~~~~~~~rg 112 (278)
||.|||.+.... .+.-+.|.. -|++.+|||+|+.+ +.+.+++++..-.+ .++... ....|
T Consensus 2 IvIp~yn~~~~l---~~~l~sl~~q~~~~~eiiVvddgS~--d~t~~~~~~~~~~~~~~~~~~~~----------~~~~G 66 (214)
T cd04196 2 VLMATYNGEKYL---REQLDSILAQTYKNDELIISDDGST--DGTVEIIKEYIDKDPFIIILIRN----------GKNLG 66 (214)
T ss_pred EEEEecCcHHHH---HHHHHHHHhCcCCCeEEEEEeCCCC--CCcHHHHHHHHhcCCceEEEEeC----------CCCcc
Confidence 789999998443 332222222 35799999999975 23445555433222 111111 01224
Q ss_pred h-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhcc
Q psy12243 113 V-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 113 ~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
. ..+|.|++. . ..=.|.|.|+|..++..-+.+|-+.
T Consensus 67 ~~~~~n~g~~~---~-~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 67 VARNFESLLQA---A-DGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHHHh---C-CCCEEEEECCCcccChhHHHHHHHH
Confidence 3 567788543 2 2346789999999999888775553
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.40 E-value=0.022 Score=48.31 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=59.2
Q ss_pred EEccCCCcccchHHHHHHhhhhcC--CCC--eEEEEEeCCCCCCHHHHHhhc----cCCCceEeeccCCCccccCCCCCC
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH--IPN--LHWIVADDTLQCSPMISALLP----KFGIPYTHIASPMPPVYRTNNAVP 109 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~--l~WIVVEd~~~~s~~v~~lL~----~sgl~y~HL~~~~p~~~~~~~~~~ 109 (278)
||.|||.+..... +.-+.|.. -|+ +..|||+|+.. +.+.++++ ..+..++++....+ .
T Consensus 1 viip~~n~~~~l~---~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~v~~~~~~~~---------~ 66 (229)
T cd04192 1 VVIAARNEAENLP---RLLQSLSALDYPKEKFEVILVDDHST--DGTVQILEFAAAKPNFQLKILNNSRV---------S 66 (229)
T ss_pred CEEEecCcHHHHH---HHHHHHHhCCCCCCceEEEEEcCCCC--cChHHHHHHHHhCCCcceEEeeccCc---------c
Confidence 5889999864433 32223221 355 89999999864 33444443 44556666643310 0
Q ss_pred Ccch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 110 PRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 110 ~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
..|. ..+|.|++. ...-+|.|.|+|...+...+++|-.
T Consensus 67 ~~g~~~a~n~g~~~----~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 67 ISGKKNALTTAIKA----AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred cchhHHHHHHHHHH----hcCCEEEEECCCcccCHHHHHHHHH
Confidence 1232 346667654 3456999999999999999998654
No 22
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=96.33 E-value=0.025 Score=48.68 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=56.2
Q ss_pred EEccCCCcccchHHHHHHhhhhcC--CC-CeEEEEEeCCCCCCHHHHHhhcc-------CCCceEeeccCCCccccCCCC
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH--IP-NLHWIVADDTLQCSPMISALLPK-------FGIPYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~--Vp-~l~WIVVEd~~~~s~~v~~lL~~-------sgl~y~HL~~~~p~~~~~~~~ 107 (278)
||.|||.+..+. .++-++|.. .| ++-.|||+|++. +.+.+++++ .++.+.++....
T Consensus 1 ViIp~yn~~~~l---~~~l~sl~~q~~~~~~eiiVvDd~S~--d~t~~i~~~~~~~~~~~~~~~~~~~~~~--------- 66 (219)
T cd06913 1 IILPVHNGEQWL---DECLESVLQQDFEGTLELSVFNDAST--DKSAEIIEKWRKKLEDSGVIVLVGSHNS--------- 66 (219)
T ss_pred CEEeecCcHHHH---HHHHHHHHhCCCCCCEEEEEEeCCCC--ccHHHHHHHHHHhCcccCeEEEEecccC---------
Confidence 588999987543 333333322 24 589999999974 334445444 233333332111
Q ss_pred CCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 108 VPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 108 ~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
....|. ..||.|++. ...=.|.|.|+|..++..-+++
T Consensus 67 ~~~~G~~~a~N~g~~~----a~gd~i~~lD~D~~~~~~~l~~ 104 (219)
T cd06913 67 PSPKGVGYAKNQAIAQ----SSGRYLCFLDSDDVMMPQRIRL 104 (219)
T ss_pred CCCccHHHHHHHHHHh----cCCCEEEEECCCccCChhHHHH
Confidence 113466 679999765 2233899999999998876654
No 23
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.27 E-value=0.044 Score=45.95 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=58.3
Q ss_pred EEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccC--CCceEeeccCCCccccCCCCCCCcc-
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKF--GIPYTHIASPMPPVYRTNNAVPPRG- 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~s--gl~y~HL~~~~p~~~~~~~~~~~rg- 112 (278)
||.|||.+.. ...|-+.-+.|.. .++.-+|||+|+.. ++.+.++++.. ..+.+++..+ . ..|
T Consensus 2 viip~~n~~~-~~~l~~~l~Sl~~q~~~~~eiiivdd~ss-~d~t~~~~~~~~~~~~i~~i~~~--~---------n~G~ 68 (201)
T cd04195 2 VLMSVYIKEK-PEFLREALESILKQTLPPDEVVLVKDGPV-TQSLNEVLEEFKRKLPLKVVPLE--K---------NRGL 68 (201)
T ss_pred EEEEccccch-HHHHHHHHHHHHhcCCCCcEEEEEECCCC-chhHHHHHHHHHhcCCeEEEEcC--c---------cccH
Confidence 6789998752 2234444444432 24678899999874 55566665542 1123343221 1 224
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 113 VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 113 ~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
...||.|++.- ..-.|.|.|+|..+....+++|
T Consensus 69 ~~a~N~g~~~a----~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 69 GKALNEGLKHC----TYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred HHHHHHHHHhc----CCCEEEEeCCccccCcHHHHHH
Confidence 36799998752 3348899999999998877763
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=95.95 E-value=0.062 Score=46.47 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=62.5
Q ss_pred EEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCC---HHHHHhhccCCCceEeeccCCCccccCCCCCCCcc
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCS---PMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s---~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
||.|||.... ..|.++-.+|.. .|++..|||+|+.+-. ..+.+++++.+..++.+.... ..+. .
T Consensus 2 iiip~~ne~~--~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~------~~G~---~ 70 (236)
T cd06435 2 IHVPCYEEPP--EMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEP------LPGA---K 70 (236)
T ss_pred eeEeeCCCcH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCC------CCCC---c
Confidence 6889999862 124444444443 3678889999987521 234567777665554443221 0010 1
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 113 VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 113 ~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
...+|.|++.... ..-+|.|.|+|..++...+.+|-
T Consensus 71 ~~a~n~g~~~a~~--~~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 71 AGALNYALERTAP--DAEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred hHHHHHHHHhcCC--CCCEEEEEcCCCCcCHHHHHHHH
Confidence 4679999887531 12388899999999999988863
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=95.92 E-value=0.065 Score=46.78 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=64.5
Q ss_pred cCCCCCCCeEEEEccCCCcccchHHHHHHhhhhcC--CCC--eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccc
Q psy12243 27 HNVVKDLPIIYFITPTYPRREQVAELTRLGQTLMH--IPN--LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVY 102 (278)
Q Consensus 27 ~~~~~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~--l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~ 102 (278)
....+..|.|-||-|||.+..- |.+.-+.+.. -|+ +.=|||+|+.+ +.+.+++++-+-...++... +++
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~---l~~~l~si~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~v~~i~~-~~~- 94 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAV---IEAKLENLLALDYPRDRLEIIVVSDGST--DGTAEIAREYADKGVKLLRF-PER- 94 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHH---HHHHHHHHHhCcCCCCcEEEEEEECCCC--ccHHHHHHHHhhCcEEEEEc-CCC-
Confidence 3445678999999999998733 3332233222 233 66688888864 34556666543221222111 111
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 103 RTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 103 ~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
.....+||.|++... .-+|.|.|+|...+...+.+|=
T Consensus 95 -------~g~~~a~n~gi~~a~----~d~i~~lD~D~~~~~~~l~~l~ 131 (251)
T cd06439 95 -------RGKAAALNRALALAT----GEIVVFTDANALLDPDALRLLV 131 (251)
T ss_pred -------CChHHHHHHHHHHcC----CCEEEEEccccCcCHHHHHHHH
Confidence 112467999988742 3688999999999998888743
No 26
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.72 E-value=0.067 Score=40.80 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=55.8
Q ss_pred EEccCCCcccchHHHHHHhhhhcCC--CCeEEEEEeCCCCCCHHHHHhhccC-C--CceEeeccCCCccccCCCCCCCcc
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMHI--PNLHWIVADDTLQCSPMISALLPKF-G--IPYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~V--p~l~WIVVEd~~~~s~~v~~lL~~s-g--l~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
+|.|+|.+ ...|-....++... ++...+|++++... .+.+.+++. . .......... ...-
T Consensus 1 iii~~~~~---~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----------~~g~ 65 (156)
T cd00761 1 VIIPAYNE---EPYLERCLESLLAQTYPNFEVIVVDDGSTD--GTLEILEEYAKKDPRVIRVINEE----------NQGL 65 (156)
T ss_pred CEEeecCc---HHHHHHHHHHHHhCCccceEEEEEeCCCCc--cHHHHHHHHHhcCCCeEEEEecC----------CCCh
Confidence 46788888 33444444444433 47888999998752 233333332 2 1111111110 0112
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 113 VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 113 ~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
...+|.|+++. ....|.|.|+|+.++...++.+
T Consensus 66 ~~~~~~~~~~~----~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 66 AAARNAGLKAA----RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHHHHHHHh----cCCEEEEECCCCccCccHHHHH
Confidence 36788898886 4678899999999999998875
No 27
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.71 E-value=0.13 Score=44.19 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=56.9
Q ss_pred EEEEccCCCcc-cchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhcc--CCCceEeeccCCCccccCCCCCCCcc
Q psy12243 36 IYFITPTYPRR-EQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPK--FGIPYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 36 I~vVTPTy~R~-~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~--sgl~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
|-||.|||.+. .......+ .|..-.+...|||.|+.+ +.+...|.. ......++..+ +.++
T Consensus 2 isVvIp~~ne~~~~l~~~l~---sl~~q~~~eiivvdd~s~--d~~~~~l~~~~~~~~~~v~~~~-------~~g~---- 65 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLR---SILRQKPLEIIVVTDGDD--EPYLSILSQTVKYGGIFVITVP-------HPGK---- 65 (235)
T ss_pred eEEEEeecCCChHHHHHHHH---HHHhCCCCEEEEEeCCCC--hHHHHHHHhhccCCcEEEEecC-------CCCh----
Confidence 57899999987 43333222 222111678899999874 445555421 11111222111 1111
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 113 VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 113 ~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
...+|.|++.. ..-+|.|.|+|..++...++++-+
T Consensus 66 ~~a~n~g~~~a----~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 66 RRALAEGIRHV----TTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred HHHHHHHHHHh----CCCEEEEECCCceeChhHHHHHHH
Confidence 25578888764 346899999999999998887653
No 28
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=95.54 E-value=0.096 Score=44.74 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=61.1
Q ss_pred EEccCCCcccchHHHHHHhhhhcC-CCCeEEEEEeCCCCCCHHHHHhhc-cC---CCceEeeccCCCccccCCCCCCCcc
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH-IPNLHWIVADDTLQCSPMISALLP-KF---GIPYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~-Vp~l~WIVVEd~~~~s~~v~~lL~-~s---gl~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
||.|||.... .|.++-+.|.. .|++.-|||+|+.+ +.+.++++ .. ++.+.+...+ . ..+|
T Consensus 1 ViIp~~Ne~~---~l~~~l~sl~~~~~~~eIivvdd~S~--D~t~~~~~~~~~~~~v~~i~~~~~---------~-~~~G 65 (191)
T cd06436 1 VLVPCLNEEA---VIQRTLASLLRNKPNFLVLVIDDASD--DDTAGIVRLAITDSRVHLLRRHLP---------N-ARTG 65 (191)
T ss_pred CEEeccccHH---HHHHHHHHHHhCCCCeEEEEEECCCC--cCHHHHHhheecCCcEEEEeccCC---------c-CCCC
Confidence 5789999764 34444444432 26788899999864 45566665 22 2222211100 0 1223
Q ss_pred -hHHHHHHHHHHHHhC-C-----Cc-EEEEecCCCccchhhhHHhhc
Q psy12243 113 -VANRRAALAWIRSYV-K-----SG-VVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 113 -~~qRN~AL~~Ir~~~-~-----~G-VVyFADDDNtYdl~LFdemR~ 151 (278)
-..+|.|++.++... . ++ +|.|.|.|..++...++.+..
T Consensus 66 k~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~ 112 (191)
T cd06436 66 KGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAP 112 (191)
T ss_pred HHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHH
Confidence 278999999987531 1 12 788999999999999888654
No 29
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=95.38 E-value=0.12 Score=44.38 Aligned_cols=96 Identities=14% Similarity=0.231 Sum_probs=57.2
Q ss_pred EEEEccCCCcccchHHHHHHhhhhcC--CC--CeEEEEEeCCCCCCHHHHHhhccCCC--ceEeeccCCCccccCCCCCC
Q psy12243 36 IYFITPTYPRREQVAELTRLGQTLMH--IP--NLHWIVADDTLQCSPMISALLPKFGI--PYTHIASPMPPVYRTNNAVP 109 (278)
Q Consensus 36 I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp--~l~WIVVEd~~~~s~~v~~lL~~sgl--~y~HL~~~~p~~~~~~~~~~ 109 (278)
+-||.|||.++.. |.++-++|+. .| +..=|||+|++. +.+.+++++.+- +..++... + ..+
T Consensus 2 ~sIiip~~n~~~~---l~~~l~sl~~q~~~~~~~evivvd~~s~--d~~~~~~~~~~~~~~~v~~i~~-~-----~~~-- 68 (249)
T cd02525 2 VSIIIPVRNEEKY---IEELLESLLNQSYPKDLIEIIVVDGGST--DGTREIVQEYAAKDPRIRLIDN-P-----KRI-- 68 (249)
T ss_pred EEEEEEcCCchhh---HHHHHHHHHhccCCCCccEEEEEeCCCC--ccHHHHHHHHHhcCCeEEEEeC-C-----CCC--
Confidence 5789999998743 3443333331 22 455567788864 345556655432 11222211 0 001
Q ss_pred CcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 110 PRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 110 ~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
....+|.|++.. ..-+|.|.|+|..++...+++|-
T Consensus 69 --~~~a~N~g~~~a----~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 69 --QSAGLNIGIRNS----RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred --chHHHHHHHHHh----CCCEEEEECCCccCCHHHHHHHH
Confidence 125699998875 33578889999999999888755
No 30
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=95.36 E-value=0.093 Score=47.32 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=49.3
Q ss_pred CeEEEEEeCCCCCCHHHHHhhcc-CCCceEeeccCCCccccCCCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCcc
Q psy12243 64 NLHWIVADDTLQCSPMISALLPK-FGIPYTHIASPMPPVYRTNNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTF 141 (278)
Q Consensus 64 ~l~WIVVEd~~~~s~~v~~lL~~-sgl~y~HL~~~~p~~~~~~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtY 141 (278)
....|||++++..+..+.+++++ ..+.+.++.. ..|. .-+|.|+++..+++.+ .|.|.|||...
T Consensus 21 ~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~-------------N~G~a~a~N~Gi~~a~~~~~d-~i~~lD~D~~~ 86 (281)
T TIGR01556 21 VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGD-------------NQGIAGAQNQGLDASFRRGVQ-GVLLLDQDSRP 86 (281)
T ss_pred CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCC-------------CcchHHHHHHHHHHHHHCCCC-EEEEECCCCCC
Confidence 36889999997534456666665 3455544321 2254 6799999998765433 56688999999
Q ss_pred chhhhHHhh
Q psy12243 142 DLKLFDEIR 150 (278)
Q Consensus 142 dl~LFdemR 150 (278)
+...+++|-
T Consensus 87 ~~~~l~~l~ 95 (281)
T TIGR01556 87 GNAFLAAQW 95 (281)
T ss_pred CHHHHHHHH
Confidence 887777643
No 31
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=95.25 E-value=0.21 Score=42.40 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=56.6
Q ss_pred EEccCCCcccchHHHHHHhhhhcC-C--CCeEEEEEeCCCCCCHHHHHhhccCCC--ceEeeccCCCccccCCCCCCCcc
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH-I--PNLHWIVADDTLQCSPMISALLPKFGI--PYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~-V--p~l~WIVVEd~~~~s~~v~~lL~~sgl--~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
||.|||.++... .++-++|.. . +++.-|||+|+.+ +.+.+++++..- +...+... ..+.|
T Consensus 1 ViIp~yn~~~~l---~~~l~sl~~q~~~~~~eiiiVDd~S~--d~t~~~~~~~~~~~~~i~~~~~----------~~n~G 65 (224)
T cd06442 1 IIIPTYNERENI---PELIERLDAALKGIDYEIIVVDDNSP--DGTAEIVRELAKEYPRVRLIVR----------PGKRG 65 (224)
T ss_pred CeEeccchhhhH---HHHHHHHHHhhcCCCeEEEEEeCCCC--CChHHHHHHHHHhCCceEEEec----------CCCCC
Confidence 578999987544 333333321 2 5789999999864 333444433211 11111110 01335
Q ss_pred h-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 113 V-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 113 ~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
. ..+|.|++..+ .-+|.|.|+|..++.+.++.|-+
T Consensus 66 ~~~a~n~g~~~a~----gd~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 66 LGSAYIEGFKAAR----GDVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred hHHHHHHHHHHcC----CCEEEEEECCCCCCHHHHHHHHH
Confidence 4 56899988743 24788999999999998887544
No 32
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=95.18 E-value=0.17 Score=44.45 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=60.5
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcC--CCC--eEEEEEeCCCCCCHHHHHhhccCCCc-eEeeccCCCccccCCCCC
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMH--IPN--LHWIVADDTLQCSPMISALLPKFGIP-YTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~--l~WIVVEd~~~~s~~v~~lL~~sgl~-y~HL~~~~p~~~~~~~~~ 108 (278)
|.|-||.|+|...... .++-+.|.. -|+ +.=|||+|+. ++.+.+++++.+.+ ..++-...+ .
T Consensus 1 p~vsIiIp~~Ne~~~l---~~~l~sl~~~~y~~~~~eiivVdd~s--~d~t~~i~~~~~~~~~~~i~~~~~--------~ 67 (241)
T cd06427 1 PVYTILVPLYKEAEVL---PQLIASLSALDYPRSKLDVKLLLEED--DEETIAAARALRLPSIFRVVVVPP--------S 67 (241)
T ss_pred CeEEEEEecCCcHHHH---HHHHHHHHhCcCCcccEEEEEEECCC--CchHHHHHHHhccCCCeeEEEecC--------C
Confidence 6789999999997443 333333332 243 5667788775 45677788776542 122211100 0
Q ss_pred CCcc-hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 109 PPRG-VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 109 ~~rg-~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
..+| ...+|.|++.. ..-+|.|.|+|..++...+++
T Consensus 68 ~~~G~~~a~n~g~~~a----~gd~i~~~DaD~~~~~~~l~~ 104 (241)
T cd06427 68 QPRTKPKACNYALAFA----RGEYVVIYDAEDAPDPDQLKK 104 (241)
T ss_pred CCCchHHHHHHHHHhc----CCCEEEEEcCCCCCChHHHHH
Confidence 1223 25799998862 234778889999999998876
No 33
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.61 E-value=0.22 Score=47.83 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=65.1
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhcC--CC-CeEEEEEeCCCCCCHHHHHhhccCCC------ceEeeccC-CCc
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLMH--IP-NLHWIVADDTLQCSPMISALLPKFGI------PYTHIASP-MPP 100 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp-~l~WIVVEd~~~~s~~v~~lL~~sgl------~y~HL~~~-~p~ 100 (278)
+..|.|-||.|+|....... +.-++|.. .| ++.-|||+|+++ +.+.+++++..- ..+.+..+ .|.
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~---~~L~sL~~q~yp~~~eIIVVDd~St--D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~ 111 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIG---ECVTSLLEQDYPGKLHVILVDDHST--DGTADIARAAARAYGRGDRLTVVSGQPLPP 111 (384)
T ss_pred CCCCCEEEEEecCCcHhHHH---HHHHHHHhCCCCCceEEEEEeCCCC--CcHHHHHHHHHHhcCCCCcEEEecCCCCCC
Confidence 45788999999999975544 33333332 45 588889999864 345555554321 11222211 111
Q ss_pred cccCCCCCCCcchHHHHHHHHHHHHhCC-CcEEEEecCCCccchhhhHHh
Q psy12243 101 VYRTNNAVPPRGVANRRAALAWIRSYVK-SGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 101 ~~~~~~~~~~rg~~qRN~AL~~Ir~~~~-~GVVyFADDDNtYdl~LFdem 149 (278)
.|.. -....|.|++..++... .-+|.|.|+|...+.+-++++
T Consensus 112 g~~G-------k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~l 154 (384)
T TIGR03469 112 GWSG-------KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARL 154 (384)
T ss_pred CCcc-------hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHH
Confidence 1110 12567888877665432 348899999999998887773
No 34
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=94.52 E-value=0.4 Score=40.23 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=58.9
Q ss_pred EEccCCCcccchHH-HHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcch-HH
Q psy12243 38 FITPTYPRREQVAE-LTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGV-AN 115 (278)
Q Consensus 38 vVTPTy~R~~Q~a~-LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~-~q 115 (278)
||-|+|....-... |..+.+...--+++.=|||+|+.+ +.+.+++++.+..+.-. ..+ ..+|- ..
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~~~~~~~~--~~~---------~~~gk~~a 67 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAAGATVLER--HDP---------ERRGKGYA 67 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHcCCeEEEe--CCC---------CCCCHHHH
Confidence 46788887632222 223322110002355578888863 56778888777652211 100 01222 56
Q ss_pred HHHHHHHHHHhCC-CcEEEEecCCCccchhhhHHhh
Q psy12243 116 RRAALAWIRSYVK-SGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 116 RN~AL~~Ir~~~~-~GVVyFADDDNtYdl~LFdemR 150 (278)
+|.|+++.++... .-+|.|.|.|..++...+.+|.
T Consensus 68 ln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 68 LDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHH
Confidence 8888888764322 3488899999999999988864
No 35
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=94.48 E-value=0.6 Score=40.48 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=61.6
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcC--CC--CeEEEEEeCCCCCCHHH-HHhhc---cCCCceEeeccCCCccccCC
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMH--IP--NLHWIVADDTLQCSPMI-SALLP---KFGIPYTHIASPMPPVYRTN 105 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp--~l~WIVVEd~~~~s~~v-~~lL~---~sgl~y~HL~~~~p~~~~~~ 105 (278)
|.|-||-|+|.... .|.+.-.+|.. .| .+.-|||+|+...|..+ .++++ ..++...|+..+.
T Consensus 1 p~vSViIp~yNe~~---~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~------- 70 (232)
T cd06437 1 PMVTVQLPVFNEKY---VVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRAD------- 70 (232)
T ss_pred CceEEEEecCCcHH---HHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCC-------
Confidence 56889999999854 33343344432 23 36667888754433222 22222 2356666665331
Q ss_pred CCCCCcc--hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 106 NAVPPRG--VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 106 ~~~~~rg--~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
..| ...+|.|++.. ..-+|.|.|.|...+.+.++++-.
T Consensus 71 ----~~G~k~~a~n~g~~~a----~~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 71 ----RTGYKAGALAEGMKVA----KGEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred ----CCCCchHHHHHHHHhC----CCCEEEEEcCCCCCChHHHHHhhh
Confidence 123 35789998753 345899999999999999888554
No 36
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=94.37 E-value=0.41 Score=39.28 Aligned_cols=97 Identities=24% Similarity=0.309 Sum_probs=59.5
Q ss_pred EEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhcc----CCCceEeeccCCCccccCCCCCCCc
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPK----FGIPYTHIASPMPPVYRTNNAVPPR 111 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~----sgl~y~HL~~~~p~~~~~~~~~~~r 111 (278)
||.|+|.++.+. .+.-++|.. -++..-|||+|++. +.+.+++++ .+....|+-.. +..+ .
T Consensus 1 ivip~~n~~~~l---~~~l~sl~~q~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~-~~~~--------~ 66 (182)
T cd06420 1 LIITTYNRPEAL---ELVLKSVLNQSILPFEVIIADDGST--EETKELIEEFKSQFPIPIKHVWQE-DEGF--------R 66 (182)
T ss_pred CEEeecCChHHH---HHHHHHHHhccCCCCEEEEEeCCCc--hhHHHHHHHHHhhcCCceEEEEcC-Ccch--------h
Confidence 578999987543 333333322 35678899999974 344444443 34455554321 1111 1
Q ss_pred chHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhcc
Q psy12243 112 GVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 112 g~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
-...||.|++.. ..-+|.|.|+|...+...+++|.+.
T Consensus 67 ~~~~~n~g~~~a----~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 67 KAKIRNKAIAAA----KGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred HHHHHHHHHHHh----cCCEEEEEcCCcccCHHHHHHHHHH
Confidence 135689888763 3458899999999999988876543
No 37
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.08 E-value=0.17 Score=43.07 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=64.3
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccCC-----CceEeeccCCCccccCCC
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKFG-----IPYTHIASPMPPVYRTNN 106 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~sg-----l~y~HL~~~~p~~~~~~~ 106 (278)
|.|-||.|+|...... .++-+.|.. -|++--|||+|+.+ +.+.+++++.. +.+.++.... + .
T Consensus 1 p~vsviip~~n~~~~l---~~~L~sl~~q~~~~~eiivVdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~--~----~ 69 (196)
T cd02520 1 PGVSILKPLCGVDPNL---YENLESFFQQDYPKYEILFCVQDED--DPAIPVVRKLIAKYPNVDARLLIGGE--K----V 69 (196)
T ss_pred CCeEEEEecCCCCccH---HHHHHHHHhccCCCeEEEEEeCCCc--chHHHHHHHHHHHCCCCcEEEEecCC--c----C
Confidence 5578999999986543 333333332 36788888998875 33444554332 2222222110 0 0
Q ss_pred CCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhccceeeeee-eeeeecc
Q psy12243 107 AVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDTKKISMFP-VGLIGSY 166 (278)
Q Consensus 107 ~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~k~vgvWP-VGlvg~~ 166 (278)
+. .....+.|.|++.. + .-+|.|.|+|..++...+++|-..- ..| +|++++.
T Consensus 70 g~-~~~~~~~n~g~~~a---~-~d~i~~~D~D~~~~~~~l~~l~~~~---~~~~~~~v~~~ 122 (196)
T cd02520 70 GI-NPKVNNLIKGYEEA---R-YDILVISDSDISVPPDYLRRMVAPL---MDPGVGLVTCL 122 (196)
T ss_pred CC-CHhHHHHHHHHHhC---C-CCEEEEECCCceEChhHHHHHHHHh---hCCCCCeEEee
Confidence 10 11234567787652 2 3477888999999999988864331 122 5555554
No 38
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=94.05 E-value=0.36 Score=45.55 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=66.3
Q ss_pred CCCCCeEEEEccCCCcccchHHH-HHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCC
Q psy12243 30 VKDLPIIYFITPTYPRREQVAEL-TRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 30 ~~~~p~I~vVTPTy~R~~Q~a~L-tRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~ 108 (278)
.+..|.|.||-|+|.......++ ..+.+.+..-.....|||+|+++ +.+.+++++-|..+.+.....+. ..
T Consensus 27 ~~~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgSt--D~T~~ia~~~~~~v~~~~~~~~~------~~ 98 (306)
T PRK13915 27 AKAGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGST--DATAERAAAAGARVVSREEILPE------LP 98 (306)
T ss_pred ccCCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCc--cHHHHHHHHhcchhhcchhhhhc------cc
Confidence 34678899999999987655433 33443332111467899999974 66788888877654432211110 00
Q ss_pred CCcch-HHHHHHHHHHHHhCCCcEEEEecCCCc-cchhhhHHh
Q psy12243 109 PPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNT-FDLKLFDEI 149 (278)
Q Consensus 109 ~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNt-Ydl~LFdem 149 (278)
..+|. ...|.|++. ...-+|.|.|.|.. ++.+...+|
T Consensus 99 ~n~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l 137 (306)
T PRK13915 99 PRPGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGL 137 (306)
T ss_pred cCCCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHH
Confidence 12232 456777654 23357889999996 888877664
No 39
>PRK11204 N-glycosyltransferase; Provisional
Probab=94.04 E-value=0.25 Score=47.32 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=62.2
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccCC-----CceEeeccCCCcccc
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKFG-----IPYTHIASPMPPVYR 103 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~sg-----l~y~HL~~~~p~~~~ 103 (278)
.+.|.|-||.|+|....... +....+.. -|++..|||+|+.+ +.+.+++++-. +.+.|..
T Consensus 51 ~~~p~vsViIp~yne~~~i~---~~l~sl~~q~yp~~eiiVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~-------- 117 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVE---ETISHLLALRYPNYEVIAINDGSS--DNTGEILDRLAAQIPRLRVIHLA-------- 117 (420)
T ss_pred CCCCCEEEEEecCCCHHHHH---HHHHHHHhCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCcEEEEEcC--------
Confidence 35688999999999874433 32333322 36889999999875 34555554322 3232221
Q ss_pred CCCCCCCcc-hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 104 TNNAVPPRG-VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 104 ~~~~~~~rg-~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
. .+| ...+|.|++.. ..=+|.|.|+|+..+.+..++|-
T Consensus 118 ~-----n~Gka~aln~g~~~a----~~d~i~~lDaD~~~~~d~L~~l~ 156 (420)
T PRK11204 118 E-----NQGKANALNTGAAAA----RSEYLVCIDGDALLDPDAAAYMV 156 (420)
T ss_pred C-----CCCHHHHHHHHHHHc----CCCEEEEECCCCCCChhHHHHHH
Confidence 0 122 35688888762 23477888999999998887754
No 40
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=93.97 E-value=0.16 Score=43.46 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=58.9
Q ss_pred EEccCCCcccchH-HHHHHhhhhc--CCCCeEEEEEeCCCCCCHHHHHhhccC----CCceEeeccCCCccccCCCCCCC
Q psy12243 38 FITPTYPRREQVA-ELTRLGQTLM--HIPNLHWIVADDTLQCSPMISALLPKF----GIPYTHIASPMPPVYRTNNAVPP 110 (278)
Q Consensus 38 vVTPTy~R~~Q~a-~LtRLa~TL~--~Vp~l~WIVVEd~~~~s~~v~~lL~~s----gl~y~HL~~~~p~~~~~~~~~~~ 110 (278)
||.|+|....-.. -|..+...+. .-++...|||+|+.+ +.+.+++++- +-..+++..+. .
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~--D~t~~~~~~~~~~~~~~i~~i~~~~-----------n 67 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK--DGTAEVARKLARKNPALIRVLTLPK-----------N 67 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CchHHHHHHHHHhCCCcEEEEEccc-----------C
Confidence 5789999653322 2334433322 225789999999974 3355555542 22223332221 1
Q ss_pred cch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhcc
Q psy12243 111 RGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 111 rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
.|. ..+|.|++... .=+|.|.|+|..++.+.+++|-+-
T Consensus 68 ~G~~~a~~~g~~~a~----gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 68 RGKGGAVRAGMLAAR----GDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred CCcHHHHHHHHHHhc----CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 233 56888887642 257889999999999988885543
No 41
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=93.68 E-value=0.71 Score=45.33 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=62.8
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhcC--CCC--eEEEEEeCCCCCCHHHHHhhccC-----CCceEeeccCCCcc
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLMH--IPN--LHWIVADDTLQCSPMISALLPKF-----GIPYTHIASPMPPV 101 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~--l~WIVVEd~~~~s~~v~~lL~~s-----gl~y~HL~~~~p~~ 101 (278)
...|.|=||-|+|.... .|.+.-+.|.. .|+ +.-|||+|+.+ +.+.+++++. ++..++...
T Consensus 46 ~~~P~vsVIIP~yNe~~---~l~~~l~sl~~q~yp~~~~eIiVVDd~St--D~T~~il~~~~~~~~~v~v~~~~~----- 115 (439)
T TIGR03111 46 GKLPDITIIIPVYNSED---TLFNCIESIYNQTYPIELIDIILANNQST--DDSFQVFCRAQNEFPGLSLRYMNS----- 115 (439)
T ss_pred CCCCCEEEEEEeCCChH---HHHHHHHHHHhcCCCCCCeEEEEEECCCC--hhHHHHHHHHHHhCCCeEEEEeCC-----
Confidence 55899999999999763 33333333332 353 66789988863 5566665432 333333321
Q ss_pred ccCCCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 102 YRTNNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 102 ~~~~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
.+|- ..+|.|++.. ..=+|.|.|+|+..+.+.+++|-
T Consensus 116 --------~~Gka~AlN~gl~~s----~g~~v~~~DaD~~~~~d~L~~l~ 153 (439)
T TIGR03111 116 --------DQGKAKALNAAIYNS----IGKYIIHIDSDGKLHKDAIKNMV 153 (439)
T ss_pred --------CCCHHHHHHHHHHHc----cCCEEEEECCCCCcChHHHHHHH
Confidence 1233 5689998763 23378899999999999888753
No 42
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=93.63 E-value=1.1 Score=42.36 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=62.8
Q ss_pred CCCeEEEEccCCCcccchHHH-HHHhhhhcCCC-CeEEEEEeCCCCCCHHHHHhhcc----CCCceEeeccCCCccccCC
Q psy12243 32 DLPIIYFITPTYPRREQVAEL-TRLGQTLMHIP-NLHWIVADDTLQCSPMISALLPK----FGIPYTHIASPMPPVYRTN 105 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~L-tRLa~TL~~Vp-~l~WIVVEd~~~~s~~v~~lL~~----sgl~y~HL~~~~p~~~~~~ 105 (278)
+.+.|-||-|+|.......++ .++...+...+ +..=|||+|+++ +.+.+++++ .+....++... .
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~--D~T~~il~~~~~~~~~~v~~i~~~--~----- 74 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSS--DNSAEMLVEAAQAPDSHIVAILLN--R----- 74 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCC--CcHHHHHHHHHhhcCCcEEEEEeC--C-----
Confidence 356689999999987665543 34555555443 678899999864 234444432 24433332211 1
Q ss_pred CCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 106 NAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 106 ~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
..|. ..+|.|+++- ..-+|.|.|.|..++.+...+|
T Consensus 75 ----n~G~~~A~~~G~~~A----~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 75 ----NYGQHSAIMAGFSHV----TGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred ----CCCHHHHHHHHHHhC----CCCEEEEECCCCCCCHHHHHHH
Confidence 2243 3477887663 2347779999999999888774
No 43
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=93.58 E-value=0.14 Score=42.07 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=57.9
Q ss_pred EEccCCCcccchHHHHHHhhhhcCC----CCeEEEEEeCCCCCCHHHHHhhccCCCceE---eeccCCCccccCCCCCCC
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMHI----PNLHWIVADDTLQCSPMISALLPKFGIPYT---HIASPMPPVYRTNNAVPP 110 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~V----p~l~WIVVEd~~~~s~~v~~lL~~sgl~y~---HL~~~~p~~~~~~~~~~~ 110 (278)
||.|||.+... |-++-+.|..- ++...|||+|+.. +.+.+++++.+-.+. ++..+. .
T Consensus 1 iii~~~n~~~~---l~~~l~sl~~~~~~~~~~eiivvd~~s~--d~~~~~~~~~~~~~~~~~~~~~~~-----------n 64 (185)
T cd04179 1 VVIPAYNEEEN---IPELVERLLAVLEEGYDYEIIVVDDGST--DGTAEIARELAARVPRVRVIRLSR-----------N 64 (185)
T ss_pred CeecccChHhh---HHHHHHHHHHHhccCCCEEEEEEcCCCC--CChHHHHHHHHHhCCCeEEEEccC-----------C
Confidence 57899998643 22333333322 3789999999975 345666665443332 222211 1
Q ss_pred cc-hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 111 RG-VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 111 rg-~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
.| ...+|.|++..+. =+|.|.|+|..++...++++=.
T Consensus 65 ~G~~~a~n~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 65 FGKGAAVRAGFKAARG----DIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred CCccHHHHHHHHHhcC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 23 3668899877432 4788999999999998887443
No 44
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=93.51 E-value=0.73 Score=38.20 Aligned_cols=97 Identities=23% Similarity=0.205 Sum_probs=58.4
Q ss_pred EEccCCCcccchHHH-HHHhhhhcC-CCCeEEEEEeCCCCCCHHHHHhhccCCC---ceEeeccCCCccccCCCCCCCcc
Q psy12243 38 FITPTYPRREQVAEL-TRLGQTLMH-IPNLHWIVADDTLQCSPMISALLPKFGI---PYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 38 vVTPTy~R~~Q~a~L-tRLa~TL~~-Vp~l~WIVVEd~~~~s~~v~~lL~~sgl---~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
||.|||.+..+...+ ..|...+.+ -+++.=|||+|+.+ +.+.++++..+- ....+... . +.|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~i~~i~~~------~-----n~G 67 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGST--DRTLEILRELAARDPRVKVIRLS------R-----NFG 67 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEec------C-----CCC
Confidence 588999999776653 234433333 23567688888865 234444443221 22233221 0 112
Q ss_pred -hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 113 -VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 113 -~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
...+|.|+++. ..-.|.|.|+|..++....++|-+
T Consensus 68 ~~~a~n~g~~~a----~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 68 QQAALLAGLDHA----RGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred cHHHHHHHHHhc----CCCEEEEEeCCCCCCHHHHHHHHH
Confidence 26678887764 235788999999999998888654
No 45
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=92.67 E-value=0.38 Score=41.24 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=50.7
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcCC--CCeEEEEEeCCCCCC--HHHHHhhccCC-CceEeeccCCCccccCCCCC
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMHI--PNLHWIVADDTLQCS--PMISALLPKFG-IPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~V--p~l~WIVVEd~~~~s--~~v~~lL~~sg-l~y~HL~~~~p~~~~~~~~~ 108 (278)
|.|.||-|+|.+.... -+.-+.|... |+++-+||+|+.... +.+.++.++.+ +....+....+..
T Consensus 1 P~v~Vvip~~~~~~~l---~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g------- 70 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVL---RRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPG------- 70 (228)
T ss_dssp --EEEE--BSS-HHHH---HHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HH-------
T ss_pred CEEEEEEEecCCHHHH---HHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCC-------
Confidence 5689999999997633 3333333332 678888888775422 22333333332 2333332211000
Q ss_pred CCcc-hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 109 PPRG-VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 109 ~~rg-~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
+.+ ..++|.|++.++ .-+|.|.|||...+...++++-
T Consensus 71 -~~~k~~a~n~~~~~~~----~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 71 -PGGKARALNEALAAAR----GDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp -HHHHHHHHHHHHHH-------SEEEEE-SSEEE-CHHHHHHH
T ss_pred -cchHHHHHHHHHHhcC----CCEEEEECCCcEECHHHHHHHH
Confidence 001 256788887764 4489999999999998888843
No 46
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=92.34 E-value=1.2 Score=40.90 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=66.8
Q ss_pred EEccCCCcccchH---H----HHHHhhhhcCCCCeEEEEEeCCCCCC--HHHHHhhccCCCc-eEeeccCCCccccCCCC
Q psy12243 38 FITPTYPRREQVA---E----LTRLGQTLMHIPNLHWIVADDTLQCS--PMISALLPKFGIP-YTHIASPMPPVYRTNNA 107 (278)
Q Consensus 38 vVTPTy~R~~Q~a---~----LtRLa~TL~~Vp~l~WIVVEd~~~~s--~~v~~lL~~sgl~-y~HL~~~~p~~~~~~~~ 107 (278)
||.|.+.+-.... . |.++.++.. -+++.=||||++...+ ..+.++++..+.. |....... ..|
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~-~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~-~~f----- 74 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQS-DPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNG-EPF----- 74 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCC-CCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCC-CCc-----
Confidence 6788888774311 1 334444322 2578889999998755 5567777777766 54443221 011
Q ss_pred CCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 108 VPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 108 ~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
.+ ...||.|.+.- ..-+|.|.|.|-..+...++++.+
T Consensus 75 --~~-a~arN~g~~~A----~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 75 --SR-AKARNIGAKYA----RGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred --CH-HHHHHHHHHHc----CCCEEEEEcCCeeeCHHHHHHHHH
Confidence 11 26699998874 456899999999999999999766
No 47
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=91.44 E-value=2.4 Score=40.39 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=61.2
Q ss_pred CCCCCeEEEEccCCCcccchHH-HHHHhhhhc----CCC--CeEEEEEeCCCCCCHHHHHhhccCC-------CceEeec
Q psy12243 30 VKDLPIIYFITPTYPRREQVAE-LTRLGQTLM----HIP--NLHWIVADDTLQCSPMISALLPKFG-------IPYTHIA 95 (278)
Q Consensus 30 ~~~~p~I~vVTPTy~R~~Q~a~-LtRLa~TL~----~Vp--~l~WIVVEd~~~~s~~v~~lL~~sg-------l~y~HL~ 95 (278)
..+.|.|-||-|+|........ |.++.+.+. ..+ ++--|||+||++ +.+.+++++-. ...+.+.
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgSt--D~T~~i~~~~~~~~~~~~~~i~vi~ 143 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSK--DKTLKVAKDFWRQNINPNIDIRLLS 143 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCC--CchHHHHHHHHHhcCCCCCcEEEEE
Confidence 3567889999999998665443 223333332 123 688999999874 33444443321 1122222
Q ss_pred cCCCccccCCCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 96 SPMPPVYRTNNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 96 ~~~p~~~~~~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
.+ . +.|. ..+|.|++.- ..-+|.|.|.|+.++.+.++++
T Consensus 144 ~~--~---------N~G~~~A~~~Gi~~a----~gd~I~~~DaD~~~~~~~l~~l 183 (333)
T PTZ00260 144 LL--R---------NKGKGGAVRIGMLAS----RGKYILMVDADGATDIDDFDKL 183 (333)
T ss_pred cC--C---------CCChHHHHHHHHHHc----cCCEEEEEeCCCCCCHHHHHHH
Confidence 11 1 2233 4478887652 2347889999999998877664
No 48
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.93 E-value=2.9 Score=38.13 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=56.2
Q ss_pred EEccCCCcccchHHHHHHhhhhc-CCC-C--eEEEEEeCCCCCCHHHHHhhc---cCCCc-eEeeccCCCccccCCCCCC
Q psy12243 38 FITPTYPRREQVAELTRLGQTLM-HIP-N--LHWIVADDTLQCSPMISALLP---KFGIP-YTHIASPMPPVYRTNNAVP 109 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~-~Vp-~--l~WIVVEd~~~~s~~v~~lL~---~sgl~-y~HL~~~~p~~~~~~~~~~ 109 (278)
||-|||.+. ...|.+.-+.|. +.+ . ..-|||+|+++ .+.+..+++ ....+ .+.+..+ .
T Consensus 2 IIIp~~N~~--~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~-d~t~~~~~~~~~~~~~~~v~vi~~~-----------~ 67 (299)
T cd02510 2 VIIIFHNEA--LSTLLRTVHSVINRTPPELLKEIILVDDFSD-KPELKLLLEEYYKKYLPKVKVLRLK-----------K 67 (299)
T ss_pred EEEEEecCc--HHHHHHHHHHHHhcCchhcCCEEEEEECCCC-chHHHHHHHHHHhhcCCcEEEEEcC-----------C
Confidence 677899876 234555444443 333 2 47899999975 343333322 22222 2222111 1
Q ss_pred Ccch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 110 PRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 110 ~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
+.|. ..||.|++.- ..-+|.|.|+|-..+...+++|
T Consensus 68 n~G~~~a~N~g~~~A----~gd~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 68 REGLIRARIAGARAA----TGDVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred CCCHHHHHHHHHHHc----cCCEEEEEeCCcccCccHHHHH
Confidence 3353 6799998873 3458899999999988777764
No 49
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=89.41 E-value=4.5 Score=42.63 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=63.9
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhc-CCC--CeEEEEEeCCCCC----------------CHHHHHhhccCCCce
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLM-HIP--NLHWIVADDTLQC----------------SPMISALLPKFGIPY 91 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~-~Vp--~l~WIVVEd~~~~----------------s~~v~~lL~~sgl~y 91 (278)
+..|.|-||-|||..+....+-|=.+ .+. .-| ++.-|||+|+.+- .+.+.++-++.|+.|
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s-~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~y 206 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLA-AKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNY 206 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHH-HHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEE
Confidence 45789999999999876543311111 122 235 5889999999531 245666666677766
Q ss_pred EeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 92 THIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 92 ~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
..- + .+ . +.-..+.|.||+.. +. -+|.|-|.|..-+....++
T Consensus 207 i~r--~--~n----~---~~KAgnLN~al~~a---~g-d~Il~lDAD~v~~pd~L~~ 248 (713)
T TIGR03030 207 ITR--P--RN----V---HAKAGNINNALKHT---DG-ELILIFDADHVPTRDFLQR 248 (713)
T ss_pred EEC--C--CC----C---CCChHHHHHHHHhc---CC-CEEEEECCCCCcChhHHHH
Confidence 542 1 11 0 11235689998652 22 4778889999999888776
No 50
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=87.21 E-value=2.3 Score=40.66 Aligned_cols=104 Identities=9% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhc-C-CCCeEEEEEeCCCCCCHHHHHhhccC-----CCceEeeccCCCcccc
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLM-H-IPNLHWIVADDTLQCSPMISALLPKF-----GIPYTHIASPMPPVYR 103 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~-~-Vp~l~WIVVEd~~~~s~~v~~lL~~s-----gl~y~HL~~~~p~~~~ 103 (278)
++.|.|-||-|+|.......+..+ +|. + -|++.-|||+|+.+ +.+.+++++. ++..+.+..+.
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~---Sl~~q~Yp~~EIivvdd~s~--D~t~~iv~~~~~~~p~~~i~~v~~~~----- 107 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLA---SFCRQDYPGFQMLFGVQDPD--DPALAVVRRLRADFPDADIDLVIDAR----- 107 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHH---HHHhcCCCCeEEEEEeCCCC--CcHHHHHHHHHHhCCCCceEEEECCC-----
Confidence 457889999999999766554332 222 2 36777788877654 2233344332 22222222111
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 104 TNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 104 ~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
+.|...-..++...-++...-+|.|.|+|..-+.+..++|-
T Consensus 108 ------~~G~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 108 ------RHGPNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred ------CCCCChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHH
Confidence 22332222223222233445688999999999999888864
No 51
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=86.48 E-value=3.5 Score=40.47 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=60.6
Q ss_pred CCCeEEEEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccC-----CCceEeeccCCCccccC
Q psy12243 32 DLPIIYFITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKF-----GIPYTHIASPMPPVYRT 104 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~s-----gl~y~HL~~~~p~~~~~ 104 (278)
..|.|-||-|+|....... +.-+.+.. -|++.=|||+|+.+ +.+.+.+++. ++.+.|..-
T Consensus 73 ~~p~vsViIP~yNE~~~i~---~~l~sll~q~yp~~eIivVdDgs~--D~t~~~~~~~~~~~~~v~vv~~~~-------- 139 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNAR---ETIHAALAQTYTNIEVIAINDGSS--DDTAQVLDALLAEDPRLRVIHLAH-------- 139 (444)
T ss_pred CCCcEEEEEEeCCCHHHHH---HHHHHHHcCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCCEEEEEeCC--------
Confidence 4688999999999764432 32233322 37889899999874 3355555442 233333311
Q ss_pred CCCCCCcc-hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 105 NNAVPPRG-VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 105 ~~~~~~rg-~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
++| ...+|.|++. ...-+|.+.|.|+..+.+...+|
T Consensus 140 -----n~Gka~AlN~gl~~----a~~d~iv~lDAD~~~~~d~L~~l 176 (444)
T PRK14583 140 -----NQGKAIALRMGAAA----ARSEYLVCIDGDALLDKNAVPYL 176 (444)
T ss_pred -----CCCHHHHHHHHHHh----CCCCEEEEECCCCCcCHHHHHHH
Confidence 223 2567888765 33458889999999998876653
No 52
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=78.53 E-value=25 Score=38.50 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=64.7
Q ss_pred CCCCCeEEEEccCCCcccchHHHHHHhhhhcC-CC--CeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCC
Q psy12243 30 VKDLPIIYFITPTYPRREQVAELTRLGQTLMH-IP--NLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNN 106 (278)
Q Consensus 30 ~~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~-Vp--~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~ 106 (278)
.+..|.+-||-|||.-+.-...-| +...+.+ -| ++.=|||+|+. ++.+.++.++.|+.|.+-. .
T Consensus 256 ~~~~P~VsViIPtYNE~~~vv~~t-I~a~l~~dYP~~k~EViVVDDgS--~D~t~~la~~~~v~yI~R~----~------ 322 (852)
T PRK11498 256 MSLWPTVDIFVPTYNEDLNVVKNT-IYASLGIDWPKDKLNIWILDDGG--REEFRQFAQEVGVKYIARP----T------ 322 (852)
T ss_pred cCCCCcEEEEEecCCCcHHHHHHH-HHHHHhccCCCCceEEEEEeCCC--ChHHHHHHHHCCcEEEEeC----C------
Confidence 345689999999998753322111 2222222 24 46778999996 4778999999888765421 1
Q ss_pred CCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 107 AVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 107 ~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
+. ..-..+.|.||++. +.+ .|.|-|.|..-+....++
T Consensus 323 n~-~gKAGnLN~aL~~a---~GE-yIavlDAD~ip~pdfL~~ 359 (852)
T PRK11498 323 HE-HAKAGNINNALKYA---KGE-FVAIFDCDHVPTRSFLQM 359 (852)
T ss_pred CC-cchHHHHHHHHHhC---CCC-EEEEECCCCCCChHHHHH
Confidence 00 11235789998873 223 667779999988877775
No 53
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=71.61 E-value=32 Score=32.96 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=59.7
Q ss_pred CCCeEEEE--ccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCC-CCCHHHHHhhccCCCceEeeccCCCccccCCCCC
Q psy12243 32 DLPIIYFI--TPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTL-QCSPMISALLPKFGIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 32 ~~p~I~vV--TPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~-~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~ 108 (278)
....||+- |||+-++.+...|.+..+.+..-+.+. |-+|..+ ..++...+.|++.|+...++++.+-..-..+.-.
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~e-itie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~ 129 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKKEDLE-FTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG 129 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCCCCE-EEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcC
Confidence 35667764 999988777655555444332223443 4556543 4578899999999999999998642210011111
Q ss_pred CCcchHHHHHHHHHHHHhCCC
Q psy12243 109 PPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 109 ~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
+.....+-..|++.+++...+
T Consensus 130 R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 130 RIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 223456777788888887543
No 54
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=65.28 E-value=47 Score=33.83 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=62.4
Q ss_pred CCeEEEE--ccCCCcccchHHHHHHhhhhc-CCCCeEEEEEeCCC--CCCHHHHHhhccCCCceEeeccCCCccccCCCC
Q psy12243 33 LPIIYFI--TPTYPRREQVAELTRLGQTLM-HIPNLHWIVADDTL--QCSPMISALLPKFGIPYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 33 ~p~I~vV--TPTy~R~~Q~a~LtRLa~TL~-~Vp~l~WIVVEd~~--~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~ 107 (278)
..+||+- |||.-.+.|..+|........ .+..+.=+-+|.+. ..++...+.|++.|+...+++..+-..-..+.-
T Consensus 219 v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i 298 (488)
T PRK08207 219 ITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAI 298 (488)
T ss_pred eeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHh
Confidence 4567775 999987766655544332211 22344455789753 568899999999999999999875321111111
Q ss_pred CCCcchHHHHHHHHHHHHhCCC
Q psy12243 108 VPPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 108 ~~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
.+.....+-..|++.+|+.+.+
T Consensus 299 gR~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 299 GRHHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred CCCCCHHHHHHHHHHHHhCCCC
Confidence 1234668888899999988654
No 55
>PF14773 VIGSSK: Helicase-associated putative binding domain, C-terminal
Probab=62.10 E-value=5.2 Score=30.17 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=18.9
Q ss_pred CCHHHHHhhccCCCceEeeccC
Q psy12243 76 CSPMISALLPKFGIPYTHIASP 97 (278)
Q Consensus 76 ~s~~v~~lL~~sgl~y~HL~~~ 97 (278)
+...+..+|...||.|||.+..
T Consensus 24 k~d~I~aiL~~~gV~YtH~N~e 45 (61)
T PF14773_consen 24 KHDPIQAILASAGVEYTHSNQE 45 (61)
T ss_pred cccHHHHHHhhcceeeeecCcc
Confidence 4567999999999999999853
No 56
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=58.99 E-value=4.8 Score=29.97 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCc--cch----hhhHHhhcc
Q psy12243 116 RRAALAWIRSYVKSGVVYFGDDDNT--FDL----KLFDEIRDT 152 (278)
Q Consensus 116 RN~AL~~Ir~~~~~GVVyFADDDNt--Ydl----~LFdemR~~ 152 (278)
=-.||+||+ ..|+||.|-.++ |++ .||+|||..
T Consensus 6 ai~AL~hL~----~~ilfi~D~Se~CGysie~Q~~L~~~ik~~ 44 (58)
T PF06858_consen 6 AITALAHLA----DAILFIIDPSEQCGYSIEEQLSLFKEIKPL 44 (58)
T ss_dssp HHHGGGGT-----SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhc----ceEEEEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence 345777753 589999999987 765 689998854
No 57
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=55.37 E-value=65 Score=31.00 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=61.0
Q ss_pred CCCCeEEEE--ccCCCcccchHHHHHHhhh-hcCCCCeEEEEEeCCC-CCCHHHHHhhccCCCceEeeccCCCccccCCC
Q psy12243 31 KDLPIIYFI--TPTYPRREQVAELTRLGQT-LMHIPNLHWIVADDTL-QCSPMISALLPKFGIPYTHIASPMPPVYRTNN 106 (278)
Q Consensus 31 ~~~p~I~vV--TPTy~R~~Q~a~LtRLa~T-L~~Vp~l~WIVVEd~~-~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~ 106 (278)
....+||+- |||.-.+.|..+|.....- +...++. -|-+|..+ ..++...+.|++.|+...++++.+-..-..+.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 136 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGA-EVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAV 136 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 346688875 9999888777776654443 3233455 46666443 35778889999999999999987422100101
Q ss_pred CCCCcchHHHHHHHHHHHHhCCC
Q psy12243 107 AVPPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 107 ~~~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
-.+.....+=..|++.+++...+
T Consensus 137 l~R~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 137 LDRTHTPGRAVAAAREARAAGFE 159 (375)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCC
Confidence 11123445555678888887544
No 58
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=52.83 E-value=20 Score=33.03 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=28.6
Q ss_pred CcchHHHHHHHHHHHHh---CCCcEEEEecCCCccchhhhHHhhccc
Q psy12243 110 PRGVANRRAALAWIRSY---VKSGVVYFGDDDNTFDLKLFDEIRDTK 153 (278)
Q Consensus 110 ~rg~~qRN~AL~~Ir~~---~~~GVVyFADDDNtYdl~LFdemR~~k 153 (278)
|.|+ .--.||+.|.++ ..+.|+||+||-| |...|.-++.-.
T Consensus 170 p~g~-~Kg~al~~ll~~~~~~~~~v~~~GD~~n--D~~mf~~~~~~~ 213 (266)
T PRK10187 170 PRGT-NKGEAIAAFMQEAPFAGRTPVFVGDDLT--DEAGFAVVNRLG 213 (266)
T ss_pred CCCC-CHHHHHHHHHHhcCCCCCeEEEEcCCcc--HHHHHHHHHhcC
Confidence 3454 344577777666 3567999999888 889999886543
No 59
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=50.00 E-value=1.2e+02 Score=29.03 Aligned_cols=97 Identities=5% Similarity=-0.051 Sum_probs=62.1
Q ss_pred CCCCeEEEE--ccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCC-CCHHHHHhhccCCCceEeeccCCCccccCCCC
Q psy12243 31 KDLPIIYFI--TPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQ-CSPMISALLPKFGIPYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 31 ~~~p~I~vV--TPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~-~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~ 107 (278)
.+..+||+- |||.-.+.|..+|.....-. ++.-.-|-+|..+. .++...+.|++.|+....+++.+-..-..+.-
T Consensus 50 ~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~--~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l 127 (350)
T PRK08446 50 EKIESVFIGGGTPSTVSAKFYEPIFEIISPY--LSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFL 127 (350)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh--cCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 356788875 99999888887776655444 44334677886654 56788899999999999999874221001011
Q ss_pred CCCcchHHHHHHHHHHHHhCCC
Q psy12243 108 VPPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 108 ~~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
.+.....+=..|++.+|+...+
T Consensus 128 gR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 128 GRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 1111234445577888877544
No 60
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=46.54 E-value=1.1e+02 Score=29.86 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=58.7
Q ss_pred EEccCCCcccchHHHHHHhhhhcCCC----CeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCC----CC
Q psy12243 38 FITPTYPRREQVAELTRLGQTLMHIP----NLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNA----VP 109 (278)
Q Consensus 38 vVTPTy~R~~Q~a~LtRLa~TL~~Vp----~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~----~~ 109 (278)
||=.||.|+. +|.|.-.+|.... +..=||..||+. +.+++..+.-+...+|+..+. ...+.... ..
T Consensus 4 Vlv~ayNRp~---~l~r~LesLl~~~p~~~~~~liIs~DG~~--~~~~~~v~~~~~~i~~i~~~~-~~~~~~~~~~~~~~ 77 (334)
T cd02514 4 VLVIACNRPD---YLRRMLDSLLSYRPSAEKFPIIVSQDGGY--EEVADVAKSFGDGVTHIQHPP-ISIKNVNPPHKFQG 77 (334)
T ss_pred EEEEecCCHH---HHHHHHHHHHhccccCCCceEEEEeCCCc--hHHHHHHHhhccccEEEEccc-ccccccCcccccch
Confidence 3445788853 4556555555542 566789999975 336666666543444543210 00100000 00
Q ss_pred Ccch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhcc
Q psy12243 110 PRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 110 ~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
-.++ ..--.||.++=++...+-|-|-|||-.-+..+|+-|.+.
T Consensus 78 y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~ 121 (334)
T cd02514 78 YYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQAT 121 (334)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHH
Confidence 0122 123357877755444566677799999888877655443
No 61
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=46.33 E-value=88 Score=28.90 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCeEEEEccCCCccc-chHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccC---CCceEeeccCCCccccCCCCC
Q psy12243 33 LPIIYFITPTYPRRE-QVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKF---GIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 33 ~p~I~vVTPTy~R~~-Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~s---gl~y~HL~~~~p~~~~~~~~~ 108 (278)
.|.|.+|.+||.|.. +..-|..|++.--..--+. +|+++. ++.+.+.++.. .+.+.+.. .|. +
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv--~vDn~s--~d~~~~~~~~~~~~~v~~i~~~----~Nl----G- 68 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDVIV--VVDNGS--TDGSLEALKARFFPNVRLIENG----ENL----G- 68 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEE--EccCCC--CCCCHHHHHhhcCCcEEEEEcC----CCc----c-
Confidence 577999999999965 5556665655433332222 566554 34566677765 44444432 111 1
Q ss_pred CCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 109 PPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 109 ~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
-.+| =|.+.++.-....+ .|+|.++|=..+...+++|.+
T Consensus 69 ~agg---~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~ 107 (305)
T COG1216 69 FAGG---FNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLK 107 (305)
T ss_pred chhh---hhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHH
Confidence 1233 34566654333222 788889996677777777544
No 62
>KOG1490|consensus
Probab=45.35 E-value=21 Score=37.35 Aligned_cols=39 Identities=36% Similarity=0.595 Sum_probs=30.9
Q ss_pred CcchHHHH-------HHHHHHHHhCCCcEEEEecCCCc--cch----hhhHHhhcc
Q psy12243 110 PRGVANRR-------AALAWIRSYVKSGVVYFGDDDNT--FDL----KLFDEIRDT 152 (278)
Q Consensus 110 ~rg~~qRN-------~AL~~Ir~~~~~GVVyFADDDNt--Ydl----~LFdemR~~ 152 (278)
.|-.++|| .||+|||. +|+||.|-+.. ||+ .||+.|+-.
T Consensus 227 D~plEdrN~IEmqsITALAHLra----aVLYfmDLSe~CGySva~QvkLfhsIKpL 278 (620)
T KOG1490|consen 227 DRPEEDRNIIEMQIITALAHLRS----AVLYFMDLSEMCGYSVAAQVKLYHSIKPL 278 (620)
T ss_pred CcchhhhhHHHHHHHHHHHHhhh----hheeeeechhhhCCCHHHHHHHHHHhHHH
Confidence 45567777 59999986 99999999987 765 589888743
No 63
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=42.63 E-value=1.1e+02 Score=30.19 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=59.1
Q ss_pred CCeEEE--EccCCCcccchHHHHHHhhhhcCCCC-eEEEEEeCCCC-CCHHHHHhhccCCCceEeeccCCCccccCCCCC
Q psy12243 33 LPIIYF--ITPTYPRREQVAELTRLGQTLMHIPN-LHWIVADDTLQ-CSPMISALLPKFGIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 33 ~p~I~v--VTPTy~R~~Q~a~LtRLa~TL~~Vp~-l~WIVVEd~~~-~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~ 108 (278)
...||+ =|||.--+.|..+|.........+.. -..|-+|..+. .++...+.|++.|+....+++.+-..-..+...
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~ 171 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALH 171 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhC
Confidence 446665 38998777666665554433333322 34578887653 567888999999999999998753210111111
Q ss_pred CCcchHHHHHHHHHHHHhCCC
Q psy12243 109 PPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 109 ~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
+.....+=..|++.+++.+..
T Consensus 172 R~~~~~~~~~ai~~l~~~g~~ 192 (430)
T PRK08208 172 RPQKRADVHQALEWIRAAGFP 192 (430)
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 122345556788899887544
No 64
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=42.62 E-value=2.7e+02 Score=25.49 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=59.3
Q ss_pred EEccCCCcccch--HHHHHHhhhhc--CC-CCeEEEEEeCCCCCCHHHH------HhhccC--CCceEeeccCCCccccC
Q psy12243 38 FITPTYPRREQV--AELTRLGQTLM--HI-PNLHWIVADDTLQCSPMIS------ALLPKF--GIPYTHIASPMPPVYRT 104 (278)
Q Consensus 38 vVTPTy~R~~Q~--a~LtRLa~TL~--~V-p~l~WIVVEd~~~~s~~v~------~lL~~s--gl~y~HL~~~~p~~~~~ 104 (278)
|+=|||.=.... .-|.++++.|. .. |.+.-+|++|+....-.+. ++-++- ++...+..-.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~------- 75 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRR------- 75 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcC-------
Confidence 566888876652 46777777764 33 6788899999976321111 121111 2322222211
Q ss_pred CCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH----hhccceee
Q psy12243 105 NNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE----IRDTKKIS 156 (278)
Q Consensus 105 ~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde----mR~~k~vg 156 (278)
....+...+-|.+|.-. ....-.|.+.|.|..-+.+...+ |..-.+||
T Consensus 76 --~~~g~Kag~l~~~~~~~--~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg 127 (254)
T cd04191 76 --ENTGRKAGNIADFCRRW--GSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAG 127 (254)
T ss_pred --CCCCccHHHHHHHHHHh--CCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE
Confidence 11133456666666421 12224788889999977776555 43344544
No 65
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=40.82 E-value=1.3e+02 Score=28.92 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=59.9
Q ss_pred CCCCeEEE--EccCCCcccchHHHHHHhhhhcCC-CCeEEEEEeCCC-CCCHHHHHhhccCCCceEeeccCCCc--cccC
Q psy12243 31 KDLPIIYF--ITPTYPRREQVAELTRLGQTLMHI-PNLHWIVADDTL-QCSPMISALLPKFGIPYTHIASPMPP--VYRT 104 (278)
Q Consensus 31 ~~~p~I~v--VTPTy~R~~Q~a~LtRLa~TL~~V-p~l~WIVVEd~~-~~s~~v~~lL~~sgl~y~HL~~~~p~--~~~~ 104 (278)
+....||+ =|||.-.+.+..+|.+..+..-.+ +...| -+|..+ ..++...+.|++.|+...++++.+-. ..+.
T Consensus 50 ~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~ei-t~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~ 128 (377)
T PRK08599 50 DKLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEF-TFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKK 128 (377)
T ss_pred CceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEE-EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 34566766 488876555555555444332223 23343 445553 35788899999999999999987522 1211
Q ss_pred CCCCCCcchHHHHHHHHHHHHhCCCc
Q psy12243 105 NNAVPPRGVANRRAALAWIRSYVKSG 130 (278)
Q Consensus 105 ~~~~~~rg~~qRN~AL~~Ir~~~~~G 130 (278)
-.+.....+...|++.+++.+...
T Consensus 129 --l~r~~~~~~~~~~i~~l~~~g~~~ 152 (377)
T PRK08599 129 --IGRTHNEEDVYEAIANAKKAGFDN 152 (377)
T ss_pred --cCCCCCHHHHHHHHHHHHHcCCCc
Confidence 112335678888999999886543
No 66
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=40.01 E-value=1.9e+02 Score=27.39 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=66.8
Q ss_pred HhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCC------CCCcchHHHHHHHHHHHHhCC
Q psy12243 55 LGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNA------VPPRGVANRRAALAWIRSYVK 128 (278)
Q Consensus 55 La~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~------~~~rg~~qRN~AL~~Ir~~~~ 128 (278)
.++.|.....+.=||---....+..+..+..+.++++.......|. +..... ..++...|=..+.+|+.++..
T Consensus 69 ~A~~li~~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~st~~~-~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~ 147 (366)
T COG0683 69 VARKLITQDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQ-LTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGG 147 (366)
T ss_pred HHHHHHhhcCceEEEEeccCcccccchhhHhhcCceEEeecCCCCc-ccccccccceEEecCChHHHHHHHHHHHHHhcC
Confidence 4445555556666666665555667788888999988777654443 222211 125566778888999998855
Q ss_pred CcEEEEecCCCccchhhhHHhhcc
Q psy12243 129 SGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 129 ~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
.=.|++.++|+.|.-.+=+++++.
T Consensus 148 ~k~v~ii~~~~~yg~~~~~~~~~~ 171 (366)
T COG0683 148 KKRVAIIGDDYAYGEGLADAFKAA 171 (366)
T ss_pred CcEEEEEeCCCCcchhHHHHHHHH
Confidence 556888999999999998887753
No 67
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=39.40 E-value=34 Score=30.31 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=63.4
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcch
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGV 113 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~ 113 (278)
-.++.|=+...+..+...-.... .++|++.+-. |+. .....++....|.-.|++++.|= +|.+. ..|.+
T Consensus 42 ~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~-da~---~~l~~~~~~~~v~~i~i~FPDPW-pK~rH--~krRl 110 (195)
T PF02390_consen 42 INFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRG-DAR---ELLRRLFPPGSVDRIYINFPDPW-PKKRH--HKRRL 110 (195)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES--CT---THHHHHSTTTSEEEEEEES------SGGG--GGGST
T ss_pred CCEEEEecchHHHHHHHHHHHhh----cccceEEEEc-cHH---HHHhhcccCCchheEEEeCCCCC-cccch--hhhhc
Confidence 34556655555544432211111 5678887643 443 35778888888999999998661 12111 13556
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhcc
Q psy12243 114 ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 114 ~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
.|....-.+-+-.+..|.|||+=|+-.|-....+.++..
T Consensus 111 ~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 111 VNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp TSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 666555555555688899999999988877777777763
No 68
>PF14620 YPEB: YpeB sporulation
Probab=38.66 E-value=45 Score=32.72 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=56.0
Q ss_pred HHHHhhccCCCceEeeccCCCccccCCCCCCCcch-HHHHHHHHHHHHhCCC--cEEEEecCCCccchhhhHHhhcccee
Q psy12243 79 MISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGV-ANRRAALAWIRSYVKS--GVVYFGDDDNTFDLKLFDEIRDTKKI 155 (278)
Q Consensus 79 ~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~-~qRN~AL~~Ir~~~~~--GVVyFADDDNtYdl~LFdemR~~k~v 155 (278)
...++=++.|-....+.-+. .. .+.-.. +-++.|.+||+++.-+ -.+|+.+-||++...+ .++...|
T Consensus 256 ~~~dVtkkGG~vi~~~~~R~---v~----~~kis~~eA~~~A~~fL~~~g~~~m~~t~~~~~~n~~~f~f---v~~q~gV 325 (361)
T PF14620_consen 256 IYMDVTKKGGHVIWFLNSRP---VG----KPKISLEEAKNKAEEFLKKHGYKNMVPTYSEQYDNIAVFNF---VYKQNGV 325 (361)
T ss_pred EEEEEEcCCCEEEEEECCCC---CC----CCCCCHHHHHHHHHHHHHHhCCCccEEeeeeccCcEEEEEE---EEeeCCE
Confidence 45556666665555554321 11 111122 4489999999999544 4678888888776554 4444444
Q ss_pred eeeeeeeeeccccccceeeCCeeeeeeccC----CCCCCCC
Q psy12243 156 SMFPVGLIGSYGISSPVLRKGNVIGFFDSW----PAKRKFP 192 (278)
Q Consensus 156 gvWPVGlvg~~~~EgPv~~~gkVvgw~~~w----~~~R~fp 192 (278)
-+-|=.+-=++ ..++|.|+|+.+.. +-.|.+|
T Consensus 326 ~iYpD~IkVkV-----ALDnGeIiG~~a~~Yl~~H~~R~iP 361 (361)
T PF14620_consen 326 RIYPDKIKVKV-----ALDNGEIIGFDARGYLMNHHERNIP 361 (361)
T ss_pred EECCCcEEEEE-----ECCCCeEEEEecHHHHHhcCCCCCC
Confidence 44442221111 12579999997642 3446655
No 69
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=35.40 E-value=1.4e+02 Score=29.84 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=57.0
Q ss_pred CCeEEE--EccCCCcccchHHHHHHhhh-hcCCCCeEEEEEeCCC-CCCHHHHHhhccCCCceEeeccCCCccccCCCCC
Q psy12243 33 LPIIYF--ITPTYPRREQVAELTRLGQT-LMHIPNLHWIVADDTL-QCSPMISALLPKFGIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 33 ~p~I~v--VTPTy~R~~Q~a~LtRLa~T-L~~Vp~l~WIVVEd~~-~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~ 108 (278)
...||+ =|||.-.+.|..+|.+.... +...+.. .|-+|..+ ..++...+.|++.|+....+++.+-..-..+...
T Consensus 104 v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~ 182 (453)
T PRK13347 104 VSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEA-EIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAIN 182 (453)
T ss_pred EEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCc-eEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC
Confidence 445554 38998766666555543332 2222333 45567443 4678899999999999999998642210000111
Q ss_pred CCcchHHHHHHHHHHHHhCCC
Q psy12243 109 PPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 109 ~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
+.....+=..|++.+++....
T Consensus 183 R~~~~~~~~~ai~~lr~~G~~ 203 (453)
T PRK13347 183 RIQPEEMVARAVELLRAAGFE 203 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCC
Confidence 122445667788999888654
No 70
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=35.15 E-value=4e+02 Score=27.42 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=56.4
Q ss_pred CCCCeEEEEccCCCcccchHHHHH-HhhhhcCCCCeEEEEEeCCCC-CCHHHHHhhccCCCceEeeccCCCccccCCCCC
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTR-LGQTLMHIPNLHWIVADDTLQ-CSPMISALLPKFGIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtR-La~TL~~Vp~l~WIVVEd~~~-~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~ 108 (278)
++.|.+-||-|.|.=..=.+++-+ +..++.- |++.=||+.|++. .|....+-+++. -+-.|+... +.+ ...
T Consensus 63 ~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY-~~~eIiVv~d~ndd~T~~~v~~l~~~-~p~v~~vv~-~~~--gp~-- 135 (504)
T PRK14716 63 VPEKRIAIFVPAWREADVIGRMLEHNLATLDY-ENYRIFVGTYPNDPATLREVDRLAAR-YPRVHLVIV-PHD--GPT-- 135 (504)
T ss_pred CCCCceEEEEeccCchhHHHHHHHHHHHcCCC-CCeEEEEEECCCChhHHHHHHHHHHH-CCCeEEEEe-CCC--CCC--
Confidence 458889999999986544444322 2222222 7775566655442 222222222221 121232221 110 000
Q ss_pred CCcchHHHHHHHHHHHHh-CCC----cEEEEecCCCccchhhhHHh
Q psy12243 109 PPRGVANRRAALAWIRSY-VKS----GVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 109 ~~rg~~qRN~AL~~Ir~~-~~~----GVVyFADDDNtYdl~LFdem 149 (278)
.+ ...=|.|++.+++. ... -+|.+-|-|+.-+...+..+
T Consensus 136 -~K-a~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~ 179 (504)
T PRK14716 136 -SK-ADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLY 179 (504)
T ss_pred -CH-HHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHH
Confidence 11 24567788887542 222 36777799999888777665
No 71
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=34.76 E-value=1.9e+02 Score=28.81 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=56.3
Q ss_pred CCCeEEE--EccCCCcccchHHHHHHhhh-hcCCCCeEEEEEeCCC-CCCHHHHHhhccCCCceEeeccCCCccccCCCC
Q psy12243 32 DLPIIYF--ITPTYPRREQVAELTRLGQT-LMHIPNLHWIVADDTL-QCSPMISALLPKFGIPYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 32 ~~p~I~v--VTPTy~R~~Q~a~LtRLa~T-L~~Vp~l~WIVVEd~~-~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~ 107 (278)
....||+ =|||.--+.|..+|.+.... +...+... +-+|..+ ..++...+.|++.|+...++++..-..-..+.-
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e-~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l 180 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAE-ISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAV 180 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCE-EEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHh
Confidence 3456665 38998655555555443332 22223343 4455444 357888999999999999999874321001111
Q ss_pred CCCcchHHHHHHHHHHHHhCCC
Q psy12243 108 VPPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 108 ~~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
.+.....+--.|++.+++....
T Consensus 181 ~r~~~~~~~~~ai~~l~~~G~~ 202 (453)
T PRK09249 181 NRIQPFEFTFALVEAARELGFT 202 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 1123445666788888887553
No 72
>cd00571 UreE UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-terminal region of UreE contains a histidine rich nickel binding site.
Probab=34.23 E-value=1.1e+02 Score=25.63 Aligned_cols=52 Identities=27% Similarity=0.486 Sum_probs=37.9
Q ss_pred EEEEccCCCcccchHHHHHHhhhh--cCCC-C--eEEEEEeCCCCCCHHHHHhhccCCCceEeecc
Q psy12243 36 IYFITPTYPRREQVAELTRLGQTL--MHIP-N--LHWIVADDTLQCSPMISALLPKFGIPYTHIAS 96 (278)
Q Consensus 36 I~vVTPTy~R~~Q~a~LtRLa~TL--~~Vp-~--l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~ 96 (278)
+++|+|.- ..+|.|+|+-| +|+| . =.|+.|.. .+.+.++|++.|++|+..-.
T Consensus 78 vl~i~~~~-----~~~~~~l~y~lGNrH~pl~i~~~~l~v~~----D~~l~~ml~~lg~~~~~~~~ 134 (136)
T cd00571 78 VLVITPKD-----MLELARLAYHLGNRHVPLQIEEDELYIPY----DHVLEDMLRKLGVRYERVER 134 (136)
T ss_pred EEEEEcCC-----HHHHHHHHHHhcCCccceEEeCCEEEEcC----CHHHHHHHHHcCCeeEEEec
Confidence 35677753 55799999998 4676 2 23677766 45789999999999987643
No 73
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=32.98 E-value=2.9e+02 Score=28.13 Aligned_cols=204 Identities=18% Similarity=0.171 Sum_probs=110.0
Q ss_pred CCCeEEEEccCCCcccchHHHHHHhhhhcCC-----CCeEEEEEeCCC-----CCCH---HHHHhhccC-CCceEeeccC
Q psy12243 32 DLPIIYFITPTYPRREQVAELTRLGQTLMHI-----PNLHWIVADDTL-----QCSP---MISALLPKF-GIPYTHIASP 97 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~V-----p~l~WIVVEd~~-----~~s~---~v~~lL~~s-gl~y~HL~~~ 97 (278)
+..+|.+|-|-..| +...+.|+.+.+..+ .+++=+||=.++ ..+. .+.++-++. +..+.-+..+
T Consensus 245 ~~~~V~iIvPl~~r--~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~ 322 (499)
T PF05679_consen 245 ESTRVHIIVPLSGR--EADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK 322 (499)
T ss_pred CCCEEEEEEEecCc--cHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec
Confidence 35889999999998 333444444444333 245555554333 1112 333444443 3344545443
Q ss_pred CCccccCCCCCCCcchHHHHHHHHHH-HHhCCCcEEEEecCCCccchhhhHHhhc--cceeee-eeeeeeec---ccc--
Q psy12243 98 MPPVYRTNNAVPPRGVANRRAALAWI-RSYVKSGVVYFGDDDNTFDLKLFDEIRD--TKKISM-FPVGLIGS---YGI-- 168 (278)
Q Consensus 98 ~p~~~~~~~~~~~rg~~qRN~AL~~I-r~~~~~GVVyFADDDNtYdl~LFdemR~--~k~vgv-WPVGlvg~---~~~-- 168 (278)
+ |--.|-+||+-. +....+.+|+|+|-|=.+..++++.+|. ++.--| .||.+.-. ..+
T Consensus 323 ~-------------~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~qvy~PI~Fs~y~p~~~~~~ 389 (499)
T PF05679_consen 323 T-------------GEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQVYFPIVFSQYNPDIVYAG 389 (499)
T ss_pred C-------------CCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcEEEEeeeccccCCcccccC
Confidence 1 223355666554 3447788999999999999999999875 565444 57777531 111
Q ss_pred ccceeeC---CeeeeeeccCCCCCCCCccccchhhhhhhcccCCCccCC-C--CCCcchhhhhHhhcCCCC-CCccc-CC
Q psy12243 169 SSPVLRK---GNVIGFFDSWPAKRKFPVDMAGFAVNVDLILKHPNATMP-Y--KAGYEEDRFISSLGVKLS-DIEPK-AN 240 (278)
Q Consensus 169 EgPv~~~---gkVvgw~~~w~~~R~fpiDMAGFAvN~~lL~~~p~~~~~-~--~~G~~Es~fL~~L~~~~~-~lEp~-a~ 240 (278)
.-|.+++ ++-.|++ |.|-.+|++|= +++++--... .++ . .-|.+.-++.+.+. ..+ +|+-+ |-
T Consensus 390 ~~~~~~~~~i~~~~G~w------~~~gfg~~~~Y-ksDy~~~~~~-~~~~~~~gwg~ED~~l~~~~l-~~~~~l~V~Ra~ 460 (499)
T PF05679_consen 390 KPPEPDQFDISKDTGFW------RRFGFGMVCFY-KSDYMRIRGG-GFDLSIRGWGGEDVDLYDKFL-KSGHKLHVFRAV 460 (499)
T ss_pred CCCccccCccCCCCCcc------ccCCCceEEEE-hhhhhhhccc-ccccccccccccHHHHHHHHH-hCCCceEEEEcc
Confidence 1122221 3444553 55566666652 3333321100 111 1 12333335555553 333 45544 44
Q ss_pred CCCEEEEeecCCCCccccc
Q psy12243 241 NCSEVSENIFKVPSSNVMS 259 (278)
Q Consensus 241 ~c~~VlVWHtrte~p~~~~ 259 (278)
+-.=+..||.+.=.|.++.
T Consensus 461 ep~L~h~yh~~~C~~~l~~ 479 (499)
T PF05679_consen 461 EPGLVHRYHPKHCDPSLSE 479 (499)
T ss_pred CCCeEEEecccCCCCCCCH
Confidence 5577899999988877654
No 74
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=32.23 E-value=1.1e+02 Score=24.86 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=30.8
Q ss_pred HHHHHHHh--CCCcEEEEecC-CCccchhhh--HHhhccceeeeeeeeeee
Q psy12243 119 ALAWIRSY--VKSGVVYFGDD-DNTFDLKLF--DEIRDTKKISMFPVGLIG 164 (278)
Q Consensus 119 AL~~Ir~~--~~~GVVyFADD-DNtYdl~LF--demR~~k~vgvWPVGlvg 164 (278)
|++.++++ +..-||+|.|- |+.+..+++ .++.+-+++.+|.+|+-.
T Consensus 84 a~~~l~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 134 (152)
T cd01462 84 ALELIERRDPRKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGD 134 (152)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecC
Confidence 44444443 24568888887 678888886 445555678899988743
No 75
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=31.70 E-value=66 Score=29.28 Aligned_cols=74 Identities=27% Similarity=0.312 Sum_probs=44.9
Q ss_pred eEEEEEeCCCCC-CHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHh---CCCcEEEEecCCCc
Q psy12243 65 LHWIVADDTLQC-SPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSY---VKSGVVYFGDDDNT 140 (278)
Q Consensus 65 l~WIVVEd~~~~-s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~---~~~GVVyFADDDNt 140 (278)
+.+.|-++.... ...+.+.|+..|+...-+.... .. -.- .|.+ ..+-.||+||.+. ..+-||.++|..|
T Consensus 120 ~sy~~~~~~~~~~~~~i~~~l~~~~l~~~~i~s~~-~~---ldi-lP~~-a~K~~Al~~L~~~~~~~~~~vl~aGDSgN- 192 (247)
T PF05116_consen 120 ISYYVDPDDSADILEEIRARLRQRGLRVNVIYSNG-RD---LDI-LPKG-ASKGAALRYLMERWGIPPEQVLVAGDSGN- 192 (247)
T ss_dssp ECEEEETTSHCHHHHHHHHHHHCCTCEEEEEECTC-CE---EEE-EETT--SHHHHHHHHHHHHT--GGGEEEEESSGG-
T ss_pred EEEEEecccchhHHHHHHHHHHHcCCCeeEEEccc-ee---EEE-ccCC-CCHHHHHHHHHHHhCCCHHHEEEEeCCCC-
Confidence 667776655432 3567888888998643221110 00 000 1333 4488899999877 4457888888888
Q ss_pred cchhhh
Q psy12243 141 FDLKLF 146 (278)
Q Consensus 141 Ydl~LF 146 (278)
|+.+|
T Consensus 193 -D~~mL 197 (247)
T PF05116_consen 193 -DLEML 197 (247)
T ss_dssp -GHHHH
T ss_pred -cHHHH
Confidence 88888
No 76
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=31.38 E-value=2.4e+02 Score=26.76 Aligned_cols=87 Identities=11% Similarity=0.015 Sum_probs=54.9
Q ss_pred hHHHHHHhhhhcCCCCeEEEEEeCCCC-CCHHHHHhhccCCCc-eEeeccCCCccccCC-CCCCCcchHHHHHHHHHHHH
Q psy12243 49 VAELTRLGQTLMHIPNLHWIVADDTLQ-CSPMISALLPKFGIP-YTHIASPMPPVYRTN-NAVPPRGVANRRAALAWIRS 125 (278)
Q Consensus 49 ~a~LtRLa~TL~~Vp~l~WIVVEd~~~-~s~~v~~lL~~sgl~-y~HL~~~~p~~~~~~-~~~~~rg~~qRN~AL~~Ir~ 125 (278)
...+..|...|...+.+.||.+|.... .++..-+.|++.|+. ...++..+-..-..+ .-.+.-...+=..|++.+++
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~ 166 (313)
T TIGR01210 87 KETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARK 166 (313)
T ss_pred HHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 334555666666556678999998774 356677789999998 689988753321111 11112234555678899998
Q ss_pred hCCCcEEEEe
Q psy12243 126 YVKSGVVYFG 135 (278)
Q Consensus 126 ~~~~GVVyFA 135 (278)
++..=.+||.
T Consensus 167 ~Gi~v~~~~i 176 (313)
T TIGR01210 167 YGAGVKAYLL 176 (313)
T ss_pred cCCcEEEEEE
Confidence 8665445554
No 77
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=31.15 E-value=2.3e+02 Score=26.74 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=58.3
Q ss_pred CCeEEEEccCCCcccchHHHHHHhhhhcCC-----CCeEEEEEeCCCCCCHHHHHhhccCCCceE-eeccCCCccccCCC
Q psy12243 33 LPIIYFITPTYPRREQVAELTRLGQTLMHI-----PNLHWIVADDTLQCSPMISALLPKFGIPYT-HIASPMPPVYRTNN 106 (278)
Q Consensus 33 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~V-----p~l~WIVVEd~~~~s~~v~~lL~~sgl~y~-HL~~~~p~~~~~~~ 106 (278)
+|.|-+|.|+|.=+.- -+.+||+.+ |++.=|||.|++ ++.+.+++++.+..+. -+.+--+
T Consensus 53 ~p~vsviiP~ynE~~~-----~~~~~l~s~~~~dyp~~evivv~d~~--~d~~~~~~~~~~~~~~~~~~~~~~------- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPE-----VLEETLESLLSQDYPRYEVIVVDDGS--TDETYEILEELGAEYGPNFRVIYP------- 118 (439)
T ss_pred CCceEEEEecCCCchh-----hHHHHHHHHHhCCCCCceEEEECCCC--ChhHHHHHHHHHhhcCcceEEEec-------
Confidence 5999999999985431 223333322 555556777764 3678888888876652 1111100
Q ss_pred CCCCcc-hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 107 AVPPRG-VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 107 ~~~~rg-~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
...++| ...=|.||..- ..=+|.+.|.|..-+.....+|
T Consensus 119 ~~~~~gK~~al~~~l~~~----~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 119 EKKNGGKAGALNNGLKRA----KGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred cccCccchHHHHHHHhhc----CCCEEEEEcCCCCCChhHHHHH
Confidence 011233 23345555542 2347788899999888777764
No 78
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=31.09 E-value=2.3e+02 Score=27.79 Aligned_cols=95 Identities=15% Similarity=0.002 Sum_probs=59.0
Q ss_pred CCCeEEEE--ccCCCcccchHHHHHHhhhhcCCCCe---EEEEEeCCCC-CCHHHHHhhccCCCceEeeccCCCccccCC
Q psy12243 32 DLPIIYFI--TPTYPRREQVAELTRLGQTLMHIPNL---HWIVADDTLQ-CSPMISALLPKFGIPYTHIASPMPPVYRTN 105 (278)
Q Consensus 32 ~~p~I~vV--TPTy~R~~Q~a~LtRLa~TL~~Vp~l---~WIVVEd~~~-~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~ 105 (278)
...+||+- |||.-.+.|..+ |..+|+..-++ .-|=+|..+. .+....+.|++.|+.-..+++.+-..-..+
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~---ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~ 142 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLER---ILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLA 142 (400)
T ss_pred ceeEEEECCCccccCCHHHHHH---HHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHH
Confidence 45577663 999875555544 44444322122 3578886543 467788899999999999998742211111
Q ss_pred CCCCCcchHHHHHHHHHHHHhCCC
Q psy12243 106 NAVPPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 106 ~~~~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
.-.+.....+-..|++.+++...+
T Consensus 143 ~l~R~~~~~~~~~ai~~l~~~G~~ 166 (400)
T PRK07379 143 LCGRSHRVKDIFAAVDLIHQAGIE 166 (400)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCC
Confidence 111233557778899999988555
No 79
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=30.92 E-value=44 Score=35.50 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=78.3
Q ss_pred ccchHHHHHHhhhhcC----CCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccC--CCccccCCCCCCCcchHHHHHH
Q psy12243 46 REQVAELTRLGQTLMH----IPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASP--MPPVYRTNNAVPPRGVANRRAA 119 (278)
Q Consensus 46 ~~Q~a~LtRLa~TL~~----Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~--~p~~~~~~~~~~~rg~~qRN~A 119 (278)
+.|..++...++.=.. ..+-.=.|+-.|+.-+.++. -|.++|+.-.|.... .+.+..+ -. ...++...
T Consensus 107 aaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~-sL~~sG~~~I~~vd~D~v~SNlnR-Ig----El~e~A~~ 180 (637)
T TIGR03693 107 AAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVR-SLIDSGFPRFHAIVTDAEEHALDR-IH----ELAEIAEE 180 (637)
T ss_pred HHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHH-HHHhcCCCcEEEEeccccchhhhH-HH----HHHHHHHH
Confidence 4577777665543111 13344468888887677666 566789987766432 1111110 00 00000000
Q ss_pred --------------HHHHHHh--CCCcEEEEecCCCccchhhhHHhhccceeeeeeeeeeeccccccceeeCCeeeeeec
Q psy12243 120 --------------LAWIRSY--VKSGVVYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFD 183 (278)
Q Consensus 120 --------------L~~Ir~~--~~~GVVyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg~~~~EgPv~~~gkVvgw~~ 183 (278)
-+-+++. .-+-|||-+||-+..+++-+++.-.-+.-+-+|+-..|...+-||++..|+=-=|.-
T Consensus 181 ~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlftPgkTGCWeC 260 (637)
T TIGR03693 181 TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQQHGDECFEA 260 (637)
T ss_pred hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceECCCCCcHHHH
Confidence 0001111 457899999999999999999977767766666666677788999998664333444
Q ss_pred cC
Q psy12243 184 SW 185 (278)
Q Consensus 184 ~w 185 (278)
.|
T Consensus 261 a~ 262 (637)
T TIGR03693 261 AW 262 (637)
T ss_pred HH
Confidence 34
No 80
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=28.86 E-value=41 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=22.8
Q ss_pred HHHHHHHHHHh---CCCcEEEEecCCCccchhhhHH
Q psy12243 116 RRAALAWIRSY---VKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 116 RN~AL~~Ir~~---~~~GVVyFADDDNtYdl~LFde 148 (278)
.-.||+++.++ ..+-+++|+|+.| |++.|..
T Consensus 160 K~~al~~l~~~~g~~~~~~i~~GD~~n--D~~ml~~ 193 (236)
T TIGR02471 160 KGLALRYLSYRWGLPLEQILVAGDSGN--DEEMLRG 193 (236)
T ss_pred hHHHHHHHHHHhCCCHHHEEEEcCCcc--HHHHHcC
Confidence 45688888765 3457999999988 6666763
No 81
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=28.82 E-value=2.9e+02 Score=25.50 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=45.7
Q ss_pred CCCeEEEEEeCCCCCCHHHHHhhcc-CCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCC----CcEEEEec
Q psy12243 62 IPNLHWIVADDTLQCSPMISALLPK-FGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVK----SGVVYFGD 136 (278)
Q Consensus 62 Vp~l~WIVVEd~~~~s~~v~~lL~~-sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~----~GVVyFAD 136 (278)
-++++|||+=|...+.+.-.+|-+- .+++...+-... ++ ..|...-+.|+.... .-+..--|
T Consensus 56 d~dF~~lv~~~~~~P~~~~~rL~~l~~~~p~~~i~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~RLD 122 (234)
T PF11316_consen 56 DQDFTWLVLFDDDLPEPYRERLRDLLADYPQFRIVFRP-----------PG--PHRDAMRRAINAARRDGADPVLQFRLD 122 (234)
T ss_pred CCCeEEEEEECCCCCHHHHHHHHHHhccCCCcEEEecC-----------Cc--hHHHHHHHHHhhhccCCCCEEEEEEEC
Confidence 3789999987776655544444432 355533332221 11 234444444444422 22334469
Q ss_pred CCCccchhhhHHhhccc
Q psy12243 137 DDNTFDLKLFDEIRDTK 153 (278)
Q Consensus 137 DDNtYdl~LFdemR~~k 153 (278)
||..++..+.+.+|+.-
T Consensus 123 dDDAl~~dFV~rlr~~a 139 (234)
T PF11316_consen 123 DDDALHRDFVARLRRAA 139 (234)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 99999999999998763
No 82
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=28.45 E-value=2e+02 Score=27.90 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=60.4
Q ss_pred CCCCeEEE--EccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCC-CCHHHHHhhccCCCceEeeccCCCccccCCCC
Q psy12243 31 KDLPIIYF--ITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQ-CSPMISALLPKFGIPYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 31 ~~~p~I~v--VTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~-~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~ 107 (278)
+...+||+ =|||.-.+.|..+|....+.. +++..=|-+|..+. .++...+.|++.|+...++++.+-..-..+.-
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~--~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l 132 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY--VDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQL 132 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh--cCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 44567775 699998888776665544432 34322256776654 46788899999999999999874221001011
Q ss_pred CCCcchHHHHHHHHHHHHhCCC
Q psy12243 108 VPPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 108 ~~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
.+.....+=..|++.+++....
T Consensus 133 ~R~~~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 133 NRTHTIQDSKEAINLLHKNGIY 154 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 1122345556788888887543
No 83
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=28.43 E-value=4e+02 Score=25.51 Aligned_cols=96 Identities=13% Similarity=-0.060 Sum_probs=58.8
Q ss_pred CCCCeEEEE--ccCCCcccchHHHHHHhh-hhcCCCCeEEEEEeCCC-CCCHHHHHhhccCCCceEeeccCCCc--cccC
Q psy12243 31 KDLPIIYFI--TPTYPRREQVAELTRLGQ-TLMHIPNLHWIVADDTL-QCSPMISALLPKFGIPYTHIASPMPP--VYRT 104 (278)
Q Consensus 31 ~~~p~I~vV--TPTy~R~~Q~a~LtRLa~-TL~~Vp~l~WIVVEd~~-~~s~~v~~lL~~sgl~y~HL~~~~p~--~~~~ 104 (278)
....+||+- |||.-.+.|..+|....+ .+..-+..- |-+|..+ ..+....+.|++.|+....+++.+-. ..+.
T Consensus 50 ~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~e-itie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~ 128 (360)
T TIGR00539 50 EPLESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCE-ITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLF 128 (360)
T ss_pred CcccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCE-EEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHH
Confidence 346788775 999876666555443332 222123344 4566554 35678889999999999999987422 1111
Q ss_pred CCCCCCcchHHHHHHHHHHHHhCCC
Q psy12243 105 NNAVPPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 105 ~~~~~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
- .+.....+-..|++.+++...+
T Consensus 129 l--gR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 129 L--GRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred h--CCCCCHHHHHHHHHHHHHcCCC
Confidence 1 1123456667789999887554
No 84
>PLN02580 trehalose-phosphatase
Probab=28.07 E-value=70 Score=31.85 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHh-C---CCc--EEEEecCCCccchhhhHHhhcc
Q psy12243 115 NRRAALAWIRSY-V---KSG--VVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 115 qRN~AL~~Ir~~-~---~~G--VVyFADDDNtYdl~LFdemR~~ 152 (278)
..-.|+++|.++ . .++ +|||+||.| |...|+.++.-
T Consensus 301 ~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~T--DedmF~~L~~~ 342 (384)
T PLN02580 301 NKGKAVEFLLESLGLSNCDDVLPIYIGDDRT--DEDAFKVLREG 342 (384)
T ss_pred CHHHHHHHHHHhcCCCcccceeEEEECCCch--HHHHHHhhhcc
Confidence 344588888766 2 224 389999888 99999998863
No 85
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=28.07 E-value=2.7e+02 Score=27.68 Aligned_cols=98 Identities=12% Similarity=-0.035 Sum_probs=55.1
Q ss_pred CCCeEEEE--ccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCC-CCCHHHHHhhccCCCceEeeccCCCccccCCCCC
Q psy12243 32 DLPIIYFI--TPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTL-QCSPMISALLPKFGIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 32 ~~p~I~vV--TPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~-~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~ 108 (278)
....||+- |||.--+.|..+|.+.......+..-..|-+|..+ ..++...+.|++.|+....+++.+-..-..+.-.
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~ 181 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN 181 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC
Confidence 45566653 88876555555544433332112122346677544 3468889999999999999998753211010011
Q ss_pred CCcchHHHHHHHHHHHHhCCC
Q psy12243 109 PPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 109 ~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
+.....+=..|++.+++.+.+
T Consensus 182 r~~~~~~~~~ai~~l~~~G~~ 202 (455)
T TIGR00538 182 RIQPEEMIFELMNHAREAGFT 202 (455)
T ss_pred CCCCHHHHHHHHHHHHhcCCC
Confidence 111233445677888877543
No 86
>KOG4779|consensus
Probab=28.02 E-value=23 Score=27.74 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=27.4
Q ss_pred CCCcEEEEecCCCccchhhhHHhhccceeeeeee
Q psy12243 127 VKSGVVYFGDDDNTFDLKLFDEIRDTKKISMFPV 160 (278)
Q Consensus 127 ~~~GVVyFADDDNtYdl~LFdemR~~k~vgvWPV 160 (278)
...|+. |+||.|+-..++.+-||.+|+|=..|.
T Consensus 35 ~d~~~g-FG~~q~tiKS~~~~LIravrTvmrvPL 67 (82)
T KOG4779|consen 35 TDQGIG-FGEDQPTIKSQLMNLIRAVRTVMRVPL 67 (82)
T ss_pred cccCcc-cCCCCccHHHHHHHHHHHHHHHHhcch
Confidence 345665 999999999999999999998876553
No 87
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.91 E-value=56 Score=26.12 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=44.4
Q ss_pred hHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHH-hC
Q psy12243 49 VAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRS-YV 127 (278)
Q Consensus 49 ~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~-~~ 127 (278)
|.++..++.-|...- +. |+ .|+-|+++|++.|++.+.+.... .| .+-..++.|++ .+
T Consensus 11 K~~~~~~a~~l~~~G-~~-i~------AT~gTa~~L~~~Gi~~~~v~~~~------------~~--g~~~i~~~i~~~g~ 68 (112)
T cd00532 11 KAMLVDLAPKLSSDG-FP-LF------ATGGTSRVLADAGIPVRAVSKRH------------ED--GEPTVDAAIAEKGK 68 (112)
T ss_pred HHHHHHHHHHHHHCC-CE-EE------ECcHHHHHHHHcCCceEEEEecC------------CC--CCcHHHHHHhCCCC
Confidence 455666665555321 11 11 35679999999999987775321 00 12347888999 89
Q ss_pred CCcEEEEecCCC
Q psy12243 128 KSGVVYFGDDDN 139 (278)
Q Consensus 128 ~~GVVyFADDDN 139 (278)
.+-||.+.|..+
T Consensus 69 idlVIn~~~~~~ 80 (112)
T cd00532 69 FDVVINLRDPRR 80 (112)
T ss_pred EEEEEEcCCCCc
Confidence 999999987444
No 88
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=26.60 E-value=2e+02 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=27.8
Q ss_pred CCCcEEEEecCC-CccchhhhHHhhc-cceeeeeeeee
Q psy12243 127 VKSGVVYFGDDD-NTFDLKLFDEIRD-TKKISMFPVGL 162 (278)
Q Consensus 127 ~~~GVVyFADDD-NtYdl~LFdemR~-~k~vgvWPVGl 162 (278)
....|+++.|-. ..+.-++++.+++ .+.+.+..+|+
T Consensus 96 ~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~~~ 133 (155)
T PF13768_consen 96 CVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTFGI 133 (155)
T ss_pred CccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEEEE
Confidence 467899999766 5677889999975 35788888887
No 89
>PRK06256 biotin synthase; Validated
Probab=26.51 E-value=3.8e+02 Score=25.15 Aligned_cols=90 Identities=6% Similarity=-0.016 Sum_probs=56.1
Q ss_pred CeEEEEccCCCccc-chHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCcc-ccCCCCCCCc
Q psy12243 34 PIIYFITPTYPRRE-QVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPV-YRTNNAVPPR 111 (278)
Q Consensus 34 p~I~vVTPTy~R~~-Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~-~~~~~~~~~r 111 (278)
..+.++|-.+.-.. ...++..+...++..+++.|.+ .-+ ..++...+.|++.|+...|++..+.+. |+.-. +..
T Consensus 109 ~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~-~~g-~l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~--~~~ 184 (336)
T PRK06256 109 GTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICA-CLG-LLTEEQAERLKEAGVDRYNHNLETSRSYFPNVV--TTH 184 (336)
T ss_pred CEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEe-cCC-cCCHHHHHHHHHhCCCEEecCCccCHHHHhhcC--CCC
Confidence 34556664442211 1235556666665446677654 333 368889999999999888887765322 32211 234
Q ss_pred chHHHHHHHHHHHHhC
Q psy12243 112 GVANRRAALAWIRSYV 127 (278)
Q Consensus 112 g~~qRN~AL~~Ir~~~ 127 (278)
.+.+|-.+++.+++..
T Consensus 185 t~~~~i~~i~~a~~~G 200 (336)
T PRK06256 185 TYEDRIDTCEMVKAAG 200 (336)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 6788889999998873
No 90
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=26.48 E-value=2.9e+02 Score=26.05 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=53.5
Q ss_pred EccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCC-CCHHHHHhhc---cCCC-ceEeeccCCCccccCCCCCCCcch
Q psy12243 39 ITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQ-CSPMISALLP---KFGI-PYTHIASPMPPVYRTNNAVPPRGV 113 (278)
Q Consensus 39 VTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~-~s~~v~~lL~---~sgl-~y~HL~~~~p~~~~~~~~~~~rg~ 113 (278)
=||||....+..+|-+.+.. .|.+.-|-+|..+. .++.+-++|+ +.|+ ...++++.+-..-..+.-.+....
T Consensus 86 gt~t~l~~~~L~~l~~~i~~---~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~ 162 (302)
T TIGR01212 86 YTNTYAPVEVLKEMYEQALS---YDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDF 162 (302)
T ss_pred CCcCCCCHHHHHHHHHHHhC---CCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChH
Confidence 49999988777766665544 57777788885443 3445556665 4588 578888865321111111112345
Q ss_pred HHHHHHHHHHHHhCC
Q psy12243 114 ANRRAALAWIRSYVK 128 (278)
Q Consensus 114 ~qRN~AL~~Ir~~~~ 128 (278)
.+.-.|++.++++..
T Consensus 163 ~~~~~ai~~l~~~gi 177 (302)
T TIGR01212 163 ACYVDAVKRARKRGI 177 (302)
T ss_pred HHHHHHHHHHHHcCC
Confidence 677788888888743
No 91
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.15 E-value=2.6e+02 Score=28.26 Aligned_cols=91 Identities=12% Similarity=0.224 Sum_probs=54.6
Q ss_pred CCeEEEE--ccCCCcccchHHHHHHhhhhcCC-C-CeEEEE---EeCCCCCCHHHHHhhccCCCceEeeccCCCccccCC
Q psy12243 33 LPIIYFI--TPTYPRREQVAELTRLGQTLMHI-P-NLHWIV---ADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTN 105 (278)
Q Consensus 33 ~p~I~vV--TPTy~R~~Q~a~LtRLa~TL~~V-p-~l~WIV---VEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~ 105 (278)
...|+++ +||..+ ..+.+|++.|..- | ++.|.. +++-. .++...++|+++|+....+++.+...-..+
T Consensus 240 v~~~~~~Dd~f~~~~----~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~-~d~ell~~l~~aG~~~v~iGiES~~~~~L~ 314 (497)
T TIGR02026 240 VGFFILADEEPTINR----KKFQEFCEEIIARNPISVTWGINTRVTDIV-RDADILHLYRRAGLVHISLGTEAAAQATLD 314 (497)
T ss_pred CCEEEEEecccccCH----HHHHHHHHHHHhcCCCCeEEEEeccccccc-CCHHHHHHHHHhCCcEEEEccccCCHHHHH
Confidence 3445544 344433 3456677776533 3 688865 22221 256788899999999999998754321111
Q ss_pred CCCCCcchHHHHHHHHHHHHhCC
Q psy12243 106 NAVPPRGVANRRAALAWIRSYVK 128 (278)
Q Consensus 106 ~~~~~rg~~qRN~AL~~Ir~~~~ 128 (278)
.-.+.-..+|-..|++.+++++.
T Consensus 315 ~~~K~~t~~~~~~ai~~l~~~Gi 337 (497)
T TIGR02026 315 HFRKGTTTSTNKEAIRLLRQHNI 337 (497)
T ss_pred HhcCCCCHHHHHHHHHHHHHCCC
Confidence 11112245777789999999854
No 92
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=25.82 E-value=77 Score=22.33 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=32.7
Q ss_pred CcchHHH--HHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 110 PRGVANR--RAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 110 ~rg~~qR--N~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
.+|+..+ +.++++.++++...+......+|..+.++|+.+
T Consensus 39 ~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 39 GQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp TSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred hCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 4466554 677888888888899999999999999999864
No 93
>COG4859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.74 E-value=13 Score=30.53 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=20.5
Q ss_pred chHHHHHHHHHH-HHh----CCCcEEEEecCCCc
Q psy12243 112 GVANRRAALAWI-RSY----VKSGVVYFGDDDNT 140 (278)
Q Consensus 112 g~~qRN~AL~~I-r~~----~~~GVVyFADDDNt 140 (278)
.|..-+.++.|+ |+. ...|-..|+||||-
T Consensus 20 ~v~~~~t~vg~LyReaP~~enDsgWr~f~gde~D 53 (105)
T COG4859 20 TVAKQNTPVGFLYREAPVFENDSGWRFFSGDETD 53 (105)
T ss_pred hhhcCCcceeEEeecCcccccCccceEecCCcch
Confidence 345556677777 443 56799999999984
No 94
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=23.62 E-value=2.5e+02 Score=21.64 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=33.4
Q ss_pred EEEEccCCCcccchHHHHHHhhhh--cCCCC---eEEEEEeCCCCCCHHHHHhhccCCCceEeeccC
Q psy12243 36 IYFITPTYPRREQVAELTRLGQTL--MHIPN---LHWIVADDTLQCSPMISALLPKFGIPYTHIASP 97 (278)
Q Consensus 36 I~vVTPTy~R~~Q~a~LtRLa~TL--~~Vp~---l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~ 97 (278)
+++|+|.- ..+|.|||+-| ||+|- =-+|.|. -...+.++|++.|+.++.+-.+
T Consensus 4 vl~I~~~~-----~~~~a~l~~~iGNrH~p~~i~~~~l~v~----~d~~l~~~L~~lg~~~~~~~~~ 61 (87)
T PF05194_consen 4 VLVIRPRD-----PKEMARLAYHIGNRHWPLFIEEDELYVP----YDHVLEELLRKLGLEVEKVERP 61 (87)
T ss_dssp EEEEE-SS-----HHHHHHHHHHHHHTT--EEEETTEEEEE------HHHHHHHHHTT-EEEEEEEE
T ss_pred EEEEeCCC-----HHHHHHHHHHHcCCccceEEcCCEEEec----CcHHHHHHHHHCCCccEEeeec
Confidence 57888833 35677889887 46661 1156665 2467899999999999888654
No 95
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.40 E-value=1.4e+02 Score=22.07 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=44.9
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhH
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFD 147 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFd 147 (278)
+||||.+.......+.|+..|+.-.... ..-+.|++.++++.-+=|+.=.+.++.-.+++.+
T Consensus 2 livd~~~~~~~~l~~~l~~~~~~~v~~~------------------~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~ 63 (112)
T PF00072_consen 2 LIVDDDPEIRELLEKLLERAGYEEVTTA------------------SSGEEALELLKKHPPDLIIIDLELPDGDGLELLE 63 (112)
T ss_dssp EEEESSHHHHHHHHHHHHHTTEEEEEEE------------------SSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEE------------------CCHHHHHHHhcccCceEEEEEeeecccccccccc
Confidence 5778877767778888887776212211 1245577778776644333333344555566666
Q ss_pred Hhhccceeeeeeeeeee
Q psy12243 148 EIRDTKKISMFPVGLIG 164 (278)
Q Consensus 148 emR~~k~vgvWPVGlvg 164 (278)
++|+.. .-.|+=+++
T Consensus 64 ~i~~~~--~~~~ii~~t 78 (112)
T PF00072_consen 64 QIRQIN--PSIPIIVVT 78 (112)
T ss_dssp HHHHHT--TTSEEEEEE
T ss_pred cccccc--ccccEEEec
Confidence 676655 455555555
No 96
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=23.25 E-value=66 Score=27.77 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCC-CcEEEEecCCCccchhhh-HHhhcc---ceeeeeeeeeeeccccccceeeC--CeeeeeeccC--C
Q psy12243 116 RRAALAWIRSYVK-SGVVYFGDDDNTFDLKLF-DEIRDT---KKISMFPVGLIGSYGISSPVLRK--GNVIGFFDSW--P 186 (278)
Q Consensus 116 RN~AL~~Ir~~~~-~GVVyFADDDNtYdl~LF-demR~~---k~vgvWPVGlvg~~~~EgPv~~~--gkVvgw~~~w--~ 186 (278)
--.+|+|+.++.. .-.|.++|||-.-.++-+ ..+++. +.-.. +.|+....+|+..+ +| |+... -
T Consensus 67 ~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~----~~g~~~~~~~~~r~~~~k---w~v~~~~y 139 (195)
T PF01762_consen 67 TLAGLKWASKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNS----IYGGCIKNGPPIRDPSSK---WYVSEEEY 139 (195)
T ss_pred HHHHHHHHHhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccc----cccccccCCccccccccC---ceeeeeec
Confidence 4568999998854 678899999988777654 446665 11111 33444444444332 44 54332 1
Q ss_pred CCCCCCcc--ccchhhhhhhcccCCCccCCCCCCcchhhhhHhhcCCCCCCcc
Q psy12243 187 AKRKFPVD--MAGFAVNVDLILKHPNATMPYKAGYEEDRFISSLGVKLSDIEP 237 (278)
Q Consensus 187 ~~R~fpiD--MAGFAvN~~lL~~~p~~~~~~~~G~~Es~fL~~L~~~~~~lEp 237 (278)
+...||-= =+|++++.+++-.=-++....+.-..|+.|+ -+....-+++|
T Consensus 140 ~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~~~~eDv~i-Gi~~~~~~i~~ 191 (195)
T PF01762_consen 140 PDDYYPPYCSGGGYVLSSDVVKRIYKASSHTPFFPLEDVFI-GILAEKLGIKP 191 (195)
T ss_pred ccccCCCcCCCCeEEecHHHHHHHHHHhhcCCCCCchHHHH-HHHHHHCCCCc
Confidence 33345532 3567777665532111211222233688777 33344445544
No 97
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.64 E-value=6.3e+02 Score=25.08 Aligned_cols=94 Identities=9% Similarity=0.051 Sum_probs=56.7
Q ss_pred CCCeEEEEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCc
Q psy12243 32 DLPIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPR 111 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~r 111 (278)
....|+++-.|..- -...+..|+..|... .+.|..--.. ..++.+.++|+++|+...++++.+...-..+.-.+.-
T Consensus 245 ~~~~i~f~Dd~f~~--~~~~~~~l~~~l~~~-~i~~~~~~~~-~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~ 320 (472)
T TIGR03471 245 EVREFFFDDDTFTD--DKPRAEEIARKLGPL-GVTWSCNARA-NVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGL 320 (472)
T ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHHHhhc-CceEEEEecC-CCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCC
Confidence 35678887766542 223445555555433 5778643222 3578899999999999999998754311111111122
Q ss_pred chHHHHHHHHHHHHhCCC
Q psy12243 112 GVANRRAALAWIRSYVKS 129 (278)
Q Consensus 112 g~~qRN~AL~~Ir~~~~~ 129 (278)
...+--.+++.+++++..
T Consensus 321 ~~~~~~~~i~~~~~~Gi~ 338 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIK 338 (472)
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 445666788999888544
No 98
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=22.53 E-value=89 Score=27.90 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=22.9
Q ss_pred HHHHHHHHHh---CCCcEEEEecCCCccchhhhHH
Q psy12243 117 RAALAWIRSY---VKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 117 N~AL~~Ir~~---~~~GVVyFADDDNtYdl~LFde 148 (278)
-.||+|+.++ ..+-+++|+|..| |++.|+.
T Consensus 169 ~~al~~l~~~~~i~~~~~i~~GD~~N--D~~ml~~ 201 (249)
T TIGR01485 169 GQALQYLLQKLAMEPSQTLVCGDSGN--DIELFEI 201 (249)
T ss_pred HHHHHHHHHHcCCCccCEEEEECChh--HHHHHHc
Confidence 3478888776 4567999999999 7777654
No 99
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=21.98 E-value=3.1e+02 Score=27.12 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=43.9
Q ss_pred HHHHHhhhhcCCCCeEEEEEeCC--CCCCHHHHHhhccCC--CceEeeccCCCccccCCCCCCCcc--hHHHHHHHHHHH
Q psy12243 51 ELTRLGQTLMHIPNLHWIVADDT--LQCSPMISALLPKFG--IPYTHIASPMPPVYRTNNAVPPRG--VANRRAALAWIR 124 (278)
Q Consensus 51 ~LtRLa~TL~~Vp~l~WIVVEd~--~~~s~~v~~lL~~sg--l~y~HL~~~~p~~~~~~~~~~~rg--~~qRN~AL~~Ir 124 (278)
.|..|..-|...+.+.||-+.-. ...++...++|+++| .++.|++..+-..--.+. ..|+ ..+=..+++.++
T Consensus 215 ~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~--m~R~~t~~~~~~~v~~ir 292 (438)
T TIGR01574 215 DFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKL--MKRGYTREWYLNLVRKLR 292 (438)
T ss_pred cHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHh--cCCCCCHHHHHHHHHHHH
Confidence 45555556655677888866432 234677888999998 899999887532111111 1232 233345666776
Q ss_pred Hh
Q psy12243 125 SY 126 (278)
Q Consensus 125 ~~ 126 (278)
+.
T Consensus 293 ~~ 294 (438)
T TIGR01574 293 AA 294 (438)
T ss_pred Hh
Confidence 65
No 100
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=21.88 E-value=4.3e+02 Score=25.92 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=88.2
Q ss_pred CeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccch
Q psy12243 64 NLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDL 143 (278)
Q Consensus 64 ~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl 143 (278)
..--|++|..+....++.++...- -.-.+|....|..|... ..=||.|+.|-.+.-..-+|.|-|-|=--|+
T Consensus 38 ~~~vi~~~~~~~~d~~i~~~i~~~-~~~~yl~~~s~~~F~s~-------~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 38 ITMVICLRAHEVMDRLIRSYIDPM-PRVLYLDFGSPEPFASE-------TICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred cEEEEEEecchhHHHHHHHHhccc-cceEEEecCCCccccch-------hhhhhccchhhhccccccEEEEEeccccccH
Confidence 578889998886554444444321 01135555555555321 2448999999777677889999999999999
Q ss_pred hhhHHhh------c----cceeeeeeeeeeec----------------cccccceeeCCeeeeeeccCCCCCCCCccccc
Q psy12243 144 KLFDEIR------D----TKKISMFPVGLIGS----------------YGISSPVLRKGNVIGFFDSWPAKRKFPVDMAG 197 (278)
Q Consensus 144 ~LFdemR------~----~k~vgvWPVGlvg~----------------~~~EgPv~~~gkVvgw~~~w~~~R~fpiDMAG 197 (278)
+-|.+|- + |...-|.||-.+-+ +..|+|+..-++-+.|+... --.-
T Consensus 110 dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~~~~~ff~~~--------~T~~ 181 (346)
T COG4092 110 DNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFRKEDNFFIAP--------YTNI 181 (346)
T ss_pred HHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhCccccccccc--------ccce
Confidence 9999865 2 23456889988764 23566776555544443221 1134
Q ss_pred hhhhhhhcccCCCccCCC-CCCcchhhhhHhhc
Q psy12243 198 FAVNVDLILKHPNATMPY-KAGYEEDRFISSLG 229 (278)
Q Consensus 198 FAvN~~lL~~~p~~~~~~-~~G~~Es~fL~~L~ 229 (278)
|.+|.++....-.-.-.. .-|+++-+|+..++
T Consensus 182 ~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~ 214 (346)
T COG4092 182 FLINRRMFSLTGGYDERFRGHGSEDFEFLTRLG 214 (346)
T ss_pred EEEehhHHHHhcCCccccccCCchhHHHHHHHH
Confidence 556666555432211111 22444445555544
No 101
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.51 E-value=3.3e+02 Score=26.76 Aligned_cols=95 Identities=13% Similarity=0.006 Sum_probs=61.9
Q ss_pred CCCeEEE--EccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCC-CCHHHHHhhccCCCceEeeccCCCccccCCCCC
Q psy12243 32 DLPIIYF--ITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQ-CSPMISALLPKFGIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 32 ~~p~I~v--VTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~-~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~ 108 (278)
...+||+ =|||.-.+.|..+|....+..-.+++..=|-+|..+. .++..-+.|++.|+.-..+++.+-..-..+...
T Consensus 62 ~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg 141 (390)
T PRK06582 62 YIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG 141 (390)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC
Confidence 4567765 5999999988888777666555566555588998875 457888899999999999998742211111111
Q ss_pred CCcchHHHHHHHHHHHHh
Q psy12243 109 PPRGVANRRAALAWIRSY 126 (278)
Q Consensus 109 ~~rg~~qRN~AL~~Ir~~ 126 (278)
+.....+=-.|++.+++.
T Consensus 142 R~h~~~~~~~ai~~~~~~ 159 (390)
T PRK06582 142 RTHDCMQAIKTIEAANTI 159 (390)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 112334444466666654
No 102
>COG1084 Predicted GTPase [General function prediction only]
Probab=21.01 E-value=1.4e+02 Score=29.58 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=32.8
Q ss_pred CCCCcchHHHHH-------HHHHHHHhCCCcEEEEecCCCc--cch----hhhHHhhccceeeeee
Q psy12243 107 AVPPRGVANRRA-------ALAWIRSYVKSGVVYFGDDDNT--FDL----KLFDEIRDTKKISMFP 159 (278)
Q Consensus 107 ~~~~rg~~qRN~-------AL~~Ir~~~~~GVVyFADDDNt--Ydl----~LFdemR~~k~vgvWP 159 (278)
+...|-.++||. ||+||. +-|+||.|-.-+ |++ +||+|++.--...+-.
T Consensus 224 GlLDRPl~ErN~IE~qAi~AL~hl~----~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~ 285 (346)
T COG1084 224 GLLDRPLEERNEIERQAILALRHLA----GVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVV 285 (346)
T ss_pred cccCCChHHhcHHHHHHHHHHHHhc----CeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEE
Confidence 334677777774 788863 467888887766 876 5899988654433333
No 103
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=20.89 E-value=1.7e+02 Score=23.42 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=46.9
Q ss_pred CCCCCCeEEEEccCCCcc---cchHHHHHHhhhhcCCC-CeEEEEEeCCCCCCHHHHHhhccCCCceEeec
Q psy12243 29 VVKDLPIIYFITPTYPRR---EQVAELTRLGQTLMHIP-NLHWIVADDTLQCSPMISALLPKFGIPYTHIA 95 (278)
Q Consensus 29 ~~~~~p~I~vVTPTy~R~---~Q~a~LtRLa~TL~~Vp-~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~ 95 (278)
..+..++++.+-+|...+ .+.+.|.+|.+....-. .+..|.+++... +.+++++.+++|.++.
T Consensus 25 ~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~----~~~~~~~~~~~~~~~~ 91 (146)
T PF08534_consen 25 DFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP----VREFLKKYGINFPVLS 91 (146)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH----HHHHHHHTTTTSEEEE
T ss_pred HhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH----HHHHHHhhCCCceEEe
Confidence 346788899999995553 46668888877766554 577777666543 8999999999998875
No 104
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=20.64 E-value=2.7e+02 Score=28.36 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=43.2
Q ss_pred HHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhccc
Q psy12243 80 ISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRDTK 153 (278)
Q Consensus 80 v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~~k 153 (278)
+.+.+....|.-.|++++.|= +|. .+..|.+.|....-.+-+..+..|++||+=|+-.|-..-.+.+.+..
T Consensus 409 ~~~~~~~~sv~~i~i~FPDPW-pKk--rh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 409 ILNDLPNNSLDGIYILFPDPW-IKN--KQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNG 479 (506)
T ss_pred HHHhcCcccccEEEEECCCCC-CCC--CCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCC
Confidence 444555555777777776541 122 22356666665555555566888999999998877655444444433
No 105
>KOG3715|consensus
Probab=20.62 E-value=77 Score=31.11 Aligned_cols=42 Identities=36% Similarity=0.726 Sum_probs=27.6
Q ss_pred HHHHHHHHHHh---CCCcEEEEecCCCcc----chhhhHH-hhc-cceeee
Q psy12243 116 RRAALAWIRSY---VKSGVVYFGDDDNTF----DLKLFDE-IRD-TKKISM 157 (278)
Q Consensus 116 RN~AL~~Ir~~---~~~GVVyFADDDNtY----dl~LFde-mR~-~k~vgv 157 (278)
+++.++=+-.. ..+|-|+|+||||-| .-+|-|+ -|- -|+++.
T Consensus 122 k~a~vRsLScE~~~~~~~pvfFGD~dnGfv~s~tF~l~D~~ARG~~R~ysi 172 (344)
T KOG3715|consen 122 KQACVRSLSCETMPSDNGPVFFGDDDNGFVLSHTFRLYDENARGFERRYSI 172 (344)
T ss_pred HHHHHHHhccccCCCCCCceEEeeCCCCeEEEEEEEecccccccceeEEEE
Confidence 46665555443 678999999999975 4566676 552 344443
No 106
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=20.47 E-value=2.5e+02 Score=21.35 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=17.0
Q ss_pred HHHHHhhhhc-CCCCeEEEEEeCCCC
Q psy12243 51 ELTRLGQTLM-HIPNLHWIVADDTLQ 75 (278)
Q Consensus 51 ~LtRLa~TL~-~Vp~l~WIVVEd~~~ 75 (278)
++|.+..... .-|...+|+||+=+.
T Consensus 24 ~vT~~~~~~lg~~~~~i~Viieev~~ 49 (69)
T COG1942 24 EVTEVTVETLGKDPSAIHVIIEEVPP 49 (69)
T ss_pred HHHHHHHHHhCCCcccEEEEEEecCh
Confidence 4566554444 456899999998764
No 107
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=20.02 E-value=41 Score=23.63 Aligned_cols=17 Identities=29% Similarity=0.725 Sum_probs=10.3
Q ss_pred cEEEEecC---CCccchhhh
Q psy12243 130 GVVYFGDD---DNTFDLKLF 146 (278)
Q Consensus 130 GVVyFADD---DNtYdl~LF 146 (278)
.-|||.|+ +..|++.+|
T Consensus 33 n~IYf~~~~~~~~~~~~~Vy 52 (54)
T PF03478_consen 33 NCIYFLDDSSDESDRDIGVY 52 (54)
T ss_pred CEEEEecCCCCCCCCCEEEE
Confidence 35899999 333444444
Done!