Query psy12243
Match_columns 278
No_of_seqs 115 out of 269
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:27:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cu0_A Galactosylgalactosylxyl 100.0 1E-101 4E-106 714.3 14.2 235 27-262 14-267 (281)
2 1v84_A Galactosylgalactosylxyl 100.0 3E-101 1E-105 704.3 15.8 231 32-263 1-244 (253)
3 2d0j_A Galactosylgalactosylxyl 100.0 5E-101 2E-105 700.2 17.4 229 32-263 1-237 (246)
4 3bcv_A Putative glycosyltransf 97.6 0.00031 1.1E-08 58.9 9.2 96 32-150 3-106 (240)
5 1qg8_A Protein (spore coat pol 97.5 0.00061 2.1E-08 57.8 10.3 102 34-149 1-109 (255)
6 4fix_A UDP-galactofuranosyl tr 96.5 0.011 3.6E-07 59.8 10.4 104 31-149 177-289 (657)
7 3ckj_A Putative uncharacterize 96.3 0.019 6.6E-07 51.9 10.0 103 31-149 45-153 (329)
8 3f1y_A Mannosyl-3-phosphoglyce 96.3 0.0074 2.5E-07 57.1 7.3 106 32-149 92-201 (387)
9 2z86_A Chondroitin synthase; G 96.3 0.0076 2.6E-07 58.7 7.6 95 32-149 373-475 (625)
10 2z86_A Chondroitin synthase; G 95.8 0.03 1E-06 54.5 9.3 98 32-150 91-196 (625)
11 1xhb_A Polypeptide N-acetylgal 95.6 0.079 2.7E-06 49.8 10.9 112 31-159 26-149 (472)
12 2ffu_A Ppgalnact-2, polypeptid 95.6 0.049 1.7E-06 51.9 9.5 99 31-149 63-167 (501)
13 3l7i_A Teichoic acid biosynthe 95.2 0.0033 1.1E-07 63.2 0.0 96 33-150 1-105 (729)
14 2d7i_A Polypeptide N-acetylgal 94.7 0.1 3.4E-06 51.2 8.9 98 31-148 109-216 (570)
15 4hg6_A Cellulose synthase subu 92.4 0.29 9.9E-06 50.2 8.0 101 31-149 137-259 (802)
16 2bo4_A Mannosylglycerate synth 91.1 0.98 3.4E-05 43.0 9.6 100 37-149 3-114 (397)
17 1fo8_A Alpha-1,3-mannosyl-glyc 85.7 4 0.00014 38.2 9.6 107 37-151 5-122 (343)
18 2fy7_A Beta-1,4-galactosyltran 82.3 4.1 0.00014 36.7 8.0 82 31-144 62-145 (287)
19 2nxv_A ATP synthase subunits r 75.3 7 0.00024 33.5 6.9 83 31-150 13-96 (249)
20 2wvl_A Mannosyl-3-phosphoglyce 65.3 4.5 0.00015 39.0 3.7 91 34-152 53-183 (391)
21 2j48_A Two-component sensor ki 50.0 28 0.00097 24.1 5.0 78 68-164 5-82 (119)
22 3lte_A Response regulator; str 45.5 41 0.0014 24.3 5.5 82 65-165 7-88 (132)
23 1olt_A Oxygen-independent copr 45.0 19 0.00063 34.2 4.3 92 33-129 105-204 (457)
24 3cg4_A Response regulator rece 41.6 38 0.0013 24.8 4.8 81 66-165 9-89 (142)
25 3i42_A Response regulator rece 40.0 45 0.0015 24.0 4.9 80 67-165 6-85 (127)
26 2pln_A HP1043, response regula 38.6 32 0.0011 25.3 3.9 62 68-152 22-83 (137)
27 2qgq_A Protein TM_1862; alpha- 38.5 41 0.0014 29.8 5.3 75 50-126 71-151 (304)
28 1ear_A Urease accessory protei 37.3 45 0.0015 27.3 5.0 58 36-102 78-140 (147)
29 2zay_A Response regulator rece 36.4 56 0.0019 24.1 5.0 81 66-165 10-90 (147)
30 3cnb_A DNA-binding response re 35.4 61 0.0021 23.5 5.1 81 67-165 11-92 (143)
31 3cg0_A Response regulator rece 31.3 53 0.0018 23.9 4.1 80 65-165 10-90 (140)
32 3grc_A Sensor protein, kinase; 31.3 60 0.0021 23.7 4.4 82 65-165 7-88 (140)
33 3hzh_A Chemotaxis response reg 30.9 48 0.0016 25.2 3.9 70 65-152 37-108 (157)
34 1k68_A Phytochrome response re 29.9 43 0.0015 24.2 3.3 23 68-90 6-28 (140)
35 3by8_A Sensor protein DCUS; hi 27.9 1.2E+02 0.0042 23.5 5.9 17 166-182 107-124 (142)
36 2gkg_A Response regulator homo 27.9 54 0.0018 23.2 3.5 66 68-152 9-75 (127)
37 3to5_A CHEY homolog; alpha(5)b 27.7 78 0.0027 24.9 4.7 85 64-166 12-96 (134)
38 3gl9_A Response regulator; bet 27.0 45 0.0015 24.2 3.0 77 68-165 6-84 (122)
39 3gt7_A Sensor protein; structu 26.8 58 0.002 24.6 3.7 70 65-153 8-77 (154)
40 1p0z_A Sensor kinase CITA; tra 26.5 1.4E+02 0.0048 22.7 5.9 17 166-182 102-119 (131)
41 2lpm_A Two-component response 26.4 83 0.0028 24.5 4.6 67 65-151 9-77 (123)
42 1k66_A Phytochrome response re 26.4 52 0.0018 24.1 3.3 80 68-165 10-100 (149)
43 3f6p_A Transcriptional regulat 25.8 1.1E+02 0.0039 21.8 5.0 67 68-153 6-72 (120)
44 3t6k_A Response regulator rece 25.7 90 0.0031 23.0 4.6 81 66-165 6-86 (136)
45 3hv2_A Response regulator/HD d 25.5 1E+02 0.0035 23.0 4.9 68 65-151 15-82 (153)
46 3cfy_A Putative LUXO repressor 24.4 1.6E+02 0.0055 21.6 5.8 64 68-152 8-73 (137)
47 1s8n_A Putative antiterminator 24.2 1.2E+02 0.0041 24.0 5.3 79 67-166 16-94 (205)
48 3ilh_A Two component response 23.7 1.1E+02 0.0038 22.2 4.7 71 64-151 9-84 (146)
49 1jbe_A Chemotaxis protein CHEY 23.5 95 0.0033 22.1 4.2 78 68-165 8-87 (128)
50 1mb3_A Cell division response 23.3 98 0.0034 21.8 4.2 78 68-164 5-82 (124)
51 4e7p_A Response regulator; DNA 23.3 65 0.0022 24.1 3.4 71 65-152 21-91 (150)
52 1p6q_A CHEY2; chemotaxis, sign 22.7 1E+02 0.0036 21.9 4.3 78 67-164 9-88 (129)
53 2qvg_A Two component response 22.4 84 0.0029 22.9 3.8 81 68-165 11-97 (143)
54 3pgv_A Haloacid dehalogenase-l 22.0 64 0.0022 27.5 3.4 31 117-149 211-244 (285)
55 3kht_A Response regulator; PSI 22.0 80 0.0027 23.2 3.6 83 64-165 5-89 (144)
56 1tmy_A CHEY protein, TMY; chem 21.7 1.1E+02 0.0037 21.5 4.2 65 68-152 6-72 (120)
57 3f6c_A Positive transcription 21.6 1.4E+02 0.0048 21.4 4.8 69 66-152 3-71 (134)
58 2qr3_A Two-component system re 21.5 95 0.0033 22.4 3.9 66 68-152 7-77 (140)
59 3jte_A Response regulator rece 20.4 1.1E+02 0.0038 22.3 4.1 68 66-152 5-74 (143)
60 3r4c_A Hydrolase, haloacid deh 20.4 74 0.0025 26.4 3.4 29 118-148 197-228 (268)
No 1
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=100.00 E-value=1.2e-101 Score=714.26 Aligned_cols=235 Identities=40% Similarity=0.701 Sum_probs=212.5
Q ss_pred cCCCCCCCeEEEEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCC
Q psy12243 27 HNVVKDLPIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNN 106 (278)
Q Consensus 27 ~~~~~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~ 106 (278)
+.+.+++|+||||||||+|++|+||||||||||+|||+||||||||++.+|++|+++|++|||+|+||+++||.+|+.+.
T Consensus 14 ~~~~~~~p~IivVTPTy~R~~Q~a~LtRLa~TL~~Vp~L~WIVVEd~~~~t~~va~lL~rsGl~y~HL~~~~p~~~~~~~ 93 (281)
T 3cu0_A 14 LVPRGSHMTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLRE 93 (281)
T ss_dssp -------CEEEEEEEECCSTTHHHHHHHHHHHHTTSSSEEEEEEESSSSCCHHHHHHHHHHCSEEEEEECCCC-------
T ss_pred cccCCCCCeEEEEeCCCCCcchhHHHHHHHHHHhcCCceEEEEEcCCCCCCHHHHHHHHHcCCceEEeccCCCccccccc
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ----CCCCcchHHHHHHHHHHH--------Hh-C----CCcEEEEecCCCccchhhhHHhhccceeeeeeeeeeeccccc
Q psy12243 107 ----AVPPRGVANRRAALAWIR--------SY-V----KSGVVYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIGSYGIS 169 (278)
Q Consensus 107 ----~~~~rg~~qRN~AL~~Ir--------~~-~----~~GVVyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg~~~~E 169 (278)
+.+|||++|||+||+||| +| + ++||||||||||+||++||||||+||+|||||||++|++.+|
T Consensus 94 ~dp~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdemR~ik~vgvWPVGlvgg~~vE 173 (281)
T 3cu0_A 94 GEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFE 173 (281)
T ss_dssp ----CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHHTSCSSEEECCEEEETTEEEE
T ss_pred cccccccchhHHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHhhhcceEeEEEeeccccceeE
Confidence 246999999999999999 76 3 689999999999999999999999999999999999999999
Q ss_pred cceeeCCeeeeeeccCCCCCCCCccccchhhhhhhcccCCCccCCC--CCCcchhhhhHhhcCCCCCCcccCCCCCEEEE
Q psy12243 170 SPVLRKGNVIGFFDSWPAKRKFPVDMAGFAVNVDLILKHPNATMPY--KAGYEEDRFISSLGVKLSDIEPKANNCSEVSE 247 (278)
Q Consensus 170 gPv~~~gkVvgw~~~w~~~R~fpiDMAGFAvN~~lL~~~p~~~~~~--~~G~~Es~fL~~L~~~~~~lEp~a~~c~~VlV 247 (278)
||+|++|||+|||+.|.++|||||||||||||+++||++|++.|++ ++|+|||+||++| ++.++|||+|+||++|||
T Consensus 174 gPvc~~gkVvGw~t~w~~~R~fpiDMAGFA~N~~lL~~~p~a~f~~~~~~G~qEs~fL~~l-v~~~~lEp~~~~c~~VlV 252 (281)
T 3cu0_A 174 GPQVQDGRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHL-VDPKDLEPRAANCTRVLV 252 (281)
T ss_dssp EEEEETTEEEEEECCSSTTCSSCCCGGGEEEEHHHHHHCTTCCCCTTSCTTCHHHHHHTTT-CCGGGCEECHHHHTCCCE
T ss_pred EEEEeCCEEeeeeccCCCCCCCccccceeEeehhhhhcCCcccccCCCCCcchhhHHHHHh-ccHhhcEecCCCCCEEEE
Confidence 9999999999999999999999999999999999999999999975 8999999999999 689999999999999999
Q ss_pred eecCCCCcccccccc
Q psy12243 248 NIFKVPSSNVMSQMV 262 (278)
Q Consensus 248 WHtrte~p~~~~~~~ 262 (278)
||||||+|++..++.
T Consensus 253 WHtrte~p~l~~e~~ 267 (281)
T 3cu0_A 253 WHTRTEKPKMKQEEQ 267 (281)
T ss_dssp ECCCBCCCCCHHHHH
T ss_pred EecccCCCccCcHHH
Confidence 999999999776654
No 2
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=100.00 E-value=3e-101 Score=704.25 Aligned_cols=231 Identities=39% Similarity=0.739 Sum_probs=217.4
Q ss_pred CCCeEEEEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCC----C
Q psy12243 32 DLPIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNN----A 107 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~----~ 107 (278)
.+|+||||||||+|++|+||||||||||+|||+||||||||++.+|++|+++|++|||+|+||++++|++|+.+. .
T Consensus 1 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~L~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~p~~~~~~~~~~~~ 80 (253)
T 1v84_A 1 ALPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDP 80 (253)
T ss_dssp -CCEEEEEEEECCSTTHHHHHHHHHHHHTTSSSEEEEEEESSSSCCHHHHHHHHHHCCEEEEEECCCCHHHHCC------
T ss_pred CCCEEEEEeCCCCccchhHHHHHHhhhhccCCceEEEEEeCCCCCCHHHHHHHHHcCCceEEeecCCCccccccccccCc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999988532 2
Q ss_pred CCCcchHHHHHHHHHHHHh-----CCCcEEEEecCCCccchhhhHHhhccceeeeeeeeeeeccccccceee-CCeeeee
Q psy12243 108 VPPRGVANRRAALAWIRSY-----VKSGVVYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLR-KGNVIGF 181 (278)
Q Consensus 108 ~~~rg~~qRN~AL~~Ir~~-----~~~GVVyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg~~~~EgPv~~-~gkVvgw 181 (278)
..+||++|||+||+|||+| +++||||||||||+||+|||||||+|++|||||||++|++.+|||+|+ +|||+||
T Consensus 81 ~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR~i~~vgvWPVglvg~~~~EgPv~~~~gkVvGw 160 (253)
T 1v84_A 81 RIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVRW 160 (253)
T ss_dssp -CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHHTCSSEEECCEESCTTSSEEEEEECTTSCEEEE
T ss_pred cccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHhccCeeEEEEEEeecCcceecCeECCCCCEeee
Confidence 3589999999999999985 689999999999999999999999999999999999999999999999 8999999
Q ss_pred eccCCCCCCCCccccchhhhhhhcccCCCccCC---CCCCcchhhhhHhhcCCCCCCcccCCCCCEEEEeecCCCCcccc
Q psy12243 182 FDSWPAKRKFPVDMAGFAVNVDLILKHPNATMP---YKAGYEEDRFISSLGVKLSDIEPKANNCSEVSENIFKVPSSNVM 258 (278)
Q Consensus 182 ~~~w~~~R~fpiDMAGFAvN~~lL~~~p~~~~~---~~~G~~Es~fL~~L~~~~~~lEp~a~~c~~VlVWHtrte~p~~~ 258 (278)
|+.|.++|||||||||||||+++||++|++.|+ .++|+|||+||++|+ +.++|||+|+||++|||||||||+|++.
T Consensus 161 ~~~w~~~R~fpiDmAGFA~N~~lll~~p~a~~~~~~~~~g~~Es~fL~~l~-~~~~lEp~~~~C~~VlvWHtrte~p~~~ 239 (253)
T 1v84_A 161 KTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELV-TLNDLEPKAANCTKILVWHTRTEKPVLV 239 (253)
T ss_dssp ECSSCTTSTTCCCGGGEEEEHHHHHHSTTCCCCSSSSCTTCHHHHHHHHHC-CGGGEEECHHHHTSCCEECCCBCCCCCG
T ss_pred ecccCCCCCccceeeeeEEEehhhhhCCCceeccccCCCcchhhHHHHhhh-hHhhcEecCCCCCEEEEEecccCCcccc
Confidence 999999999999999999999999999999886 368999999999995 7899999999999999999999999988
Q ss_pred ccccc
Q psy12243 259 SQMVT 263 (278)
Q Consensus 259 ~~~~~ 263 (278)
+++..
T Consensus 240 ~e~~~ 244 (253)
T 1v84_A 240 NEGKK 244 (253)
T ss_dssp GGTTT
T ss_pred ccccc
Confidence 88744
No 3
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-101 Score=700.19 Aligned_cols=229 Identities=41% Similarity=0.782 Sum_probs=214.3
Q ss_pred CCCeEEEEccCCCcccchHHHHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCc
Q psy12243 32 DLPIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPR 111 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~r 111 (278)
.+|+||||||||+|++|+||||||||||+|||+||||||||++.++++|+++|++|||+|+||++++|++|+.. ..||
T Consensus 1 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~~~~v~~lL~~sgl~y~HL~~~~~~~~~~~--~~pr 78 (246)
T 2d0j_A 1 QLPTIYAITPTYSRPVQKAELTRLANTFRQVAQLHWILVEDAAARSELVSRFLARAGLPSTHLHVPTPRRYKRP--GLPR 78 (246)
T ss_dssp CCCCEEEEEEECCSTTHHHHHHHHHHHHTTSTTEEEEEEESSSSCCHHHHHHHHHSCSCEEEEECCCCCC------CCCC
T ss_pred CCCEEEEEeCCCCccchhHHHHHHHHHHhcCCceEEEEEcCCCCCCHHHHHHHHHcCCceEEEecCCccccCCC--CCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999853 2489
Q ss_pred chHHHHHHHHHHHHhCC-----CcEEEEecCCCccchhhhHHhhccceeeeeeeeeeeccccccceeeCCeeeeeeccCC
Q psy12243 112 GVANRRAALAWIRSYVK-----SGVVYFGDDDNTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWP 186 (278)
Q Consensus 112 g~~qRN~AL~~Ir~~~~-----~GVVyFADDDNtYdl~LFdemR~~k~vgvWPVGlvg~~~~EgPv~~~gkVvgw~~~w~ 186 (278)
|++|||+||+|||+|+. +||||||||||+||+|||||||+||+|||||||++|+..+|||+|++|||+|||++|.
T Consensus 79 g~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR~i~~vgvWPVglvg~~~~EgPv~~~gkVvGw~t~w~ 158 (246)
T 2d0j_A 79 ATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRRYERPLVENGKVVGWYTGWR 158 (246)
T ss_dssp CHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHTTCSSEEECCEEEETTEEEEEEEEETTEEEEEECSSC
T ss_pred hHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHhhhceeeEEEEEeecCcceecceeeCCEecceecccC
Confidence 99999999999999974 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchhhhhhhcccCCCccCC---CCCCcchhhhhHhhcCCCCCCcccCCCCCEEEEeecCCCCccccccccc
Q psy12243 187 AKRKFPVDMAGFAVNVDLILKHPNATMP---YKAGYEEDRFISSLGVKLSDIEPKANNCSEVSENIFKVPSSNVMSQMVT 263 (278)
Q Consensus 187 ~~R~fpiDMAGFAvN~~lL~~~p~~~~~---~~~G~~Es~fL~~L~~~~~~lEp~a~~c~~VlVWHtrte~p~~~~~~~~ 263 (278)
++|+|||||||||||+++||++|++.|+ .++|+|||+||++|+ +.++|||+|+||++|||||||||+|++..++..
T Consensus 159 ~~R~fpiDmAGFA~N~~lll~~p~a~~~~~~~~~g~~Es~fL~~l~-~~~~lEp~~~~c~~VlvWhtrte~~~l~~e~~~ 237 (246)
T 2d0j_A 159 ADRPFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDFLKQIT-TVEELEPKANNCTKVLVWHTRTEKVNLANEPKY 237 (246)
T ss_dssp TTSTTCCCGGGEEEEHHHHHHCTTCCCCTTSSSGGGHHHHHHHTTC-CGGGCEECHHHHTCCCEECCCBCCCCCTTCCSS
T ss_pred CCCcCcccceeeEeehhhhhcCcccccccCCCCCCchhhHHHHHhc-cHhhceeccCCCCEEEEEeccccCccccccccc
Confidence 9999999999999999999999998775 478999999999995 789999999999999999999999997766643
No 4
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=97.57 E-value=0.00031 Score=58.95 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=63.6
Q ss_pred CCCeEEEEccCCCcccchHHHHHHhhhhc-C-CCCeEEEEEeCCCCCCHHHHHhhcc-----CCCceEeeccCCCccccC
Q psy12243 32 DLPIIYFITPTYPRREQVAELTRLGQTLM-H-IPNLHWIVADDTLQCSPMISALLPK-----FGIPYTHIASPMPPVYRT 104 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~-~-Vp~l~WIVVEd~~~~s~~v~~lL~~-----sgl~y~HL~~~~p~~~~~ 104 (278)
..|.|-||.|||.+..... +.-..|. + .+++..|||+|+.+ +.+.+++++ .++.+.| .+
T Consensus 3 ~~p~vsViIp~yn~~~~l~---~~l~Sl~~q~~~~~eiIvvDd~S~--d~t~~~~~~~~~~~~~i~~i~--~~------- 68 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKYLD---QCVQALLAQTLSDIEIILIDDESP--DNCPKICDDYAAQYPNIKVIH--KK------- 68 (240)
T ss_dssp CCCSEEEEEEESSCTTTHH---HHHHHHHTCSSSSEEEEEEECCCS--SSHHHHHHHHHHHCSSEEEEE--CC-------
T ss_pred CCCcEEEEEecCCCHHHHH---HHHHHHHhCcCCCeEEEEEECCCC--cCHHHHHHHHHhhCCCEEEEE--CC-------
Confidence 3688999999999875433 3222222 1 36899999999874 334555544 2333332 11
Q ss_pred CCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 105 NNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 105 ~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
..|. ..||.|++.. ..-.|.|.|+|..++...++++-
T Consensus 69 -----n~G~~~a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~ 106 (240)
T 3bcv_A 69 -----NAGLGMACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMY 106 (240)
T ss_dssp -----CCCHHHHHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHH
T ss_pred -----CCChHHHHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHH
Confidence 2344 6799998873 33589999999999998888753
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=97.51 E-value=0.00061 Score=57.84 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=64.4
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcC--CCCeEEEEEeCCCCCCHHHHHhhccC----CCceEeeccCCCccccCCCC
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMH--IPNLHWIVADDTLQCSPMISALLPKF----GIPYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~l~WIVVEd~~~~s~~v~~lL~~s----gl~y~HL~~~~p~~~~~~~~ 107 (278)
|.|-||.|||.+..-. .+.-.+|.. .|++..|||+|+.+ +.+.+++++- ++.+.+.... .....
T Consensus 1 p~vSViIp~yn~~~~l---~~~l~Sl~~q~~~~~eiivvDd~S~--d~t~~~~~~~~~~~~i~~i~~~~~--~~~~~--- 70 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYV---AKSISSILSQTFSDFELFIMDDNSN--EETLNVIRPFLNDNRVRFYQSDIS--GVKER--- 70 (255)
T ss_dssp CCEEEEEEESSCTTTH---HHHHHHHHTCSCCCEEEEEEECSCC--HHHHHHHGGGGGSTTEEEEECCCC--SHHHH---
T ss_pred CeEEEEEEcCCCHHHH---HHHHHHHHhccCCceEEEEEECCCC--chHHHHHHHHhhcCCEEEEecccc--ccccc---
Confidence 6788999999997433 333333321 46899999999964 6677777664 3433333200 00000
Q ss_pred CCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 108 VPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 108 ~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
....|. ..||.|++.. ..-.|.|.|+|..++...++++
T Consensus 71 ~~n~G~~~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~ 109 (255)
T 1qg8_A 71 TEKTRYAALINQAIEMA----EGEYITYATDDNIYMPDRLLKM 109 (255)
T ss_dssp HSSCHHHHHHHHHHHHC----CCSEEEEEETTEEECTTHHHHH
T ss_pred ccccCHHHHHHHHHHHc----CCCEEEEeCCCCccChHHHHHH
Confidence 012354 6799998763 3358899999999998887764
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=96.52 E-value=0.011 Score=59.82 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=69.5
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhcCC-----CCeEEEEEeCCCCC---CHHHHHhhccCCCceEeeccCCCccc
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLMHI-----PNLHWIVADDTLQC---SPMISALLPKFGIPYTHIASPMPPVY 102 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~V-----p~l~WIVVEd~~~~---s~~v~~lL~~sgl~y~HL~~~~p~~~ 102 (278)
+..|.|-||.|||.|.. +|.+.-.+|..- ++..-|||+|+.+- ++.+.+++++.+-..+.+..+
T Consensus 177 ~~~pkVSVVIptYN~~~---~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~----- 248 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPA---DCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP----- 248 (657)
T ss_dssp CSCCCEEEECCBSSCHH---HHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-----
T ss_pred CCCCeEEEEEEecCCHH---HHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-----
Confidence 34688999999999975 344444444332 34478999999853 345566665533333333211
Q ss_pred cCCCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 103 RTNNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 103 ~~~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
+.|. ..||.|+++.+.+...-.|.|.|||...+...+++|
T Consensus 249 -------N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~l 289 (657)
T 4fix_A 249 -------NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRV 289 (657)
T ss_dssp -------CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHH
Confidence 2244 679999999877644458899999999998888774
No 7
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=96.34 E-value=0.019 Score=51.95 Aligned_cols=103 Identities=14% Similarity=0.024 Sum_probs=67.0
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhcC--CC-CeEEEEEeCCCCCCHHHHHhhccCCCceEee-ccCCCccccCCC
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLMH--IP-NLHWIVADDTLQCSPMISALLPKFGIPYTHI-ASPMPPVYRTNN 106 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp-~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL-~~~~p~~~~~~~ 106 (278)
+..|.|-||.|||.+.....+ .-..|.. .+ +...|||+|+.+ +.+.+++++.+..+... .+- . .
T Consensus 45 ~~~~~vSViIp~yN~~~~l~~---~l~sl~~q~~~~~~eiivVDdgS~--D~t~~~~~~~~~~~~~~~~~~-----~--~ 112 (329)
T 3ckj_A 45 KAGRTISVVLPALDEEDTIGS---VIDSISPLVDGLVDELIVLDSGST--DDTEIRAVAAGARVVSREQAL-----P--E 112 (329)
T ss_dssp TTTCCEEEEEEESSCTTTHHH---HHHHHGGGBTTTBSEEEEEECSCC--SSHHHHHHHTTCEEEEHHHHC-----T--T
T ss_pred ccCCcEEEEEeeCCCHHHHHH---HHHHHHHhhCCCCcEEEEEeCCCC--chHHHHHHHhhhhhccceeee-----c--c
Confidence 456889999999997654432 2222221 25 488999999974 55788888877654321 110 0 0
Q ss_pred CCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCc-cchhhhHHh
Q psy12243 107 AVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNT-FDLKLFDEI 149 (278)
Q Consensus 107 ~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNt-Ydl~LFdem 149 (278)
.....|. ..+|.|++.. ..-+|.|.|+|.. ++...+++|
T Consensus 113 ~~~n~G~~~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l 153 (329)
T 3ckj_A 113 VPIRPGKGEALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWL 153 (329)
T ss_dssp SCCCCSHHHHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHH
T ss_pred CCCCCCHHHHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHH
Confidence 0113354 6799998763 3358999999999 898877764
No 8
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=96.30 E-value=0.0074 Score=57.14 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=70.7
Q ss_pred CCCeEEEEccCCCcccchHH-HHHHhhhhcCCC-CeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCC
Q psy12243 32 DLPIIYFITPTYPRREQVAE-LTRLGQTLMHIP-NLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVP 109 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~-LtRLa~TL~~Vp-~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~ 109 (278)
..|.|-||-|||.......+ |..+...|...+ +...|||+|+.+ +.+.+++++.+..+.+-...-. .. ..
T Consensus 92 ~~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt--D~T~~i~~~~~~~v~~~~~~~i---~~---~~ 163 (387)
T 3f1y_A 92 LGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSE--DGTAGVAASHGAEVYSENELMS---GY---GD 163 (387)
T ss_dssp HTCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS--SSHHHHHHHTTCEEEEGGGTTG---GG---CS
T ss_pred CCCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC--ccHHHHHHHhCchhcccceeEe---cC---Cc
Confidence 36889999999998765544 444544344444 789999999974 5578888888776544322110 00 01
Q ss_pred Ccch-HHHHHHHHHHHHhCCCcEEEEecCCCc-cchhhhHHh
Q psy12243 110 PRGV-ANRRAALAWIRSYVKSGVVYFGDDDNT-FDLKLFDEI 149 (278)
Q Consensus 110 ~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNt-Ydl~LFdem 149 (278)
.+|. ..+|.|+++. ..-+|.|.|.|.. ++.+.+.+|
T Consensus 164 n~G~g~A~n~G~~~A----~gd~i~~lDaD~~~~~p~~L~~l 201 (387)
T 3f1y_A 164 AHGKGDAMWRALSVT----RGDLVLYIDADTRDFRPQLAYGV 201 (387)
T ss_dssp CCSHHHHHHHHTTTC----CSSEEEECCTTCSSCCTHHHHTT
T ss_pred cCCHHHHHHHHHHhc----CCCEEEEEcCCCCcCCHHHHHHH
Confidence 2343 6789998763 3348899999999 888776663
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=96.30 E-value=0.0076 Score=58.74 Aligned_cols=95 Identities=16% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCCeEEEEccCCCcccchHHH-HH-HhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccC-----CCceEeeccCCCccccC
Q psy12243 32 DLPIIYFITPTYPRREQVAEL-TR-LGQTLMHIPNLHWIVADDTLQCSPMISALLPKF-----GIPYTHIASPMPPVYRT 104 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~L-tR-La~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~s-----gl~y~HL~~~~p~~~~~ 104 (278)
..|.|-||+|||.+.....+. .. +.|| .+++..|||+|+.+ +.+.+++++. ++.+.+ .+
T Consensus 373 ~~~~vsiii~~yn~~~~l~~~l~s~~~q~---~~~~eiivvdd~S~--d~t~~~~~~~~~~~~~i~~~~--~~------- 438 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKYIVRCVESALNQT---ITDLEVCICDDGST--DDTLRILQEHYANHPRVRFIS--QK------- 438 (625)
T ss_dssp SSCSEEEEEEESSCTTTHHHHHHHHHSSS---CCSEEEEEEEESCS--SSHHHHHHHHHTTCTTEEEEE--EC-------
T ss_pred cCCeEEEEEeCCCCHHHHHHHHHHHHhCc---CCCeEEEEEECcCC--hhHHHHHHHHHhhCCcEEEEe--CC-------
Confidence 368899999999986433322 11 2233 36899999999975 3355555542 333332 11
Q ss_pred CCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 105 NNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 105 ~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
..|. ..||.|++.. ..-+|.|.|+|..++...++++
T Consensus 439 -----n~G~~~a~n~g~~~a----~g~~i~~ld~D~~~~~~~l~~~ 475 (625)
T 2z86_A 439 -----NKGIGSASNTAVRLC----RGFYIGQLDSDDFLEPDAVELC 475 (625)
T ss_dssp -----CCCHHHHHHHHHHHC----CSSEEEECCTTCEECTTHHHHH
T ss_pred -----CCCHHHHHHHHHHhc----CCCEEEEECCCcccChhHHHHH
Confidence 2354 6799998863 3348899999999999888874
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.84 E-value=0.03 Score=54.49 Aligned_cols=98 Identities=22% Similarity=0.154 Sum_probs=65.1
Q ss_pred CCCeEEEEccCCCcccchHHHHHHhhhhcCC---CCeEEEEEeCCCCCCHHHHHhhccC----CCceEeeccCCCccccC
Q psy12243 32 DLPIIYFITPTYPRREQVAELTRLGQTLMHI---PNLHWIVADDTLQCSPMISALLPKF----GIPYTHIASPMPPVYRT 104 (278)
Q Consensus 32 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~V---p~l~WIVVEd~~~~s~~v~~lL~~s----gl~y~HL~~~~p~~~~~ 104 (278)
.+|.|-||.|||.++ ..|.+.-++|..- +++.-|||+|+.+ +.+.+++++- ++.+.+. +
T Consensus 91 ~~p~vsviIp~~n~~---~~l~~~l~sl~~q~~~~~~eiivvDd~s~--d~t~~~~~~~~~~~~i~~i~~--~------- 156 (625)
T 2z86_A 91 IIDGLSIVIPTYNRA---KILAITLACLCNQKTIYDYEVIVADDGSK--ENIEEIVREFESLLNIKYVRQ--K------- 156 (625)
T ss_dssp CCCCEEEEEEESSCH---HHHHHHHHHHHTCCCSSCEEEEEEEESCS--SCHHHHHHTTTTTSCEEEEEE--C-------
T ss_pred cCCcEEEEEecCCcH---HHHHHHHHHHHhhccCCCeEEEEEeCCCc--hhHHHHHHHhhhcCCeEEEEe--C-------
Confidence 458899999999995 3455555555432 3788999999874 3456666653 3333332 1
Q ss_pred CCCCCCcc-hHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 105 NNAVPPRG-VANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 105 ~~~~~~rg-~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
.. ..| ...||.|++.. ..-+|.|.|+|...+...++++-
T Consensus 157 --~~-~~g~~~a~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~~ 196 (625)
T 2z86_A 157 --DY-GYQLCAVRNLGLRAA----KYNYVAILDCDMAPNPLWVQSYM 196 (625)
T ss_dssp --CC-SCCHHHHHHHHHHHC----CSSEEEEECTTEEECTTHHHHHH
T ss_pred --CC-CcchhHHHHHHHHhC----CcCEEEEECCCCCCCHHHHHHHH
Confidence 00 113 36799998863 33488999999999988877643
No 11
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=95.59 E-value=0.079 Score=49.80 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhc-CC-CC--eEEEEEeCCCCC--C-HHHHHhhccCCCceEeeccCCCcccc
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLM-HI-PN--LHWIVADDTLQC--S-PMISALLPKFGIPYTHIASPMPPVYR 103 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~-~V-p~--l~WIVVEd~~~~--s-~~v~~lL~~sgl~y~HL~~~~p~~~~ 103 (278)
.++|.|-||.|||.+.. ..|.+.-+.|. +. |+ ..-|||+|+.+. + ..+.++.++.+...+.+..+ .
T Consensus 26 ~~~p~vSVIIp~yN~~~--~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~--~--- 98 (472)
T 1xhb_A 26 DNLPTTSVVIVFHNEAW--STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRME--Q--- 98 (472)
T ss_dssp SCCCCEEEEEEESSCCH--HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECS--S---
T ss_pred cCCCCeEEEEEeCCCCH--HHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECC--C---
Confidence 46899999999999872 23444333333 22 34 588999999752 1 22333334333223333221 1
Q ss_pred CCCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH----hhccceeeeee
Q psy12243 104 TNNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE----IRDTKKISMFP 159 (278)
Q Consensus 104 ~~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde----mR~~k~vgvWP 159 (278)
..|. ..||.|++.. ..-+|.|.|+|..++...+++ +++-..+++-|
T Consensus 99 ------n~G~~~a~N~g~~~A----~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~ 149 (472)
T 1xhb_A 99 ------RSGLIRARLKGAAVS----RGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCP 149 (472)
T ss_dssp ------CCCHHHHHHHHHHHC----CSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEE
T ss_pred ------CCChHHHHHHHHHhc----cCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEe
Confidence 2244 6799998763 345899999999988776665 34344444433
No 12
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=95.57 E-value=0.049 Score=51.90 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=63.0
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhc-CC-CC--eEEEEEeCCCCCCHHHHHhhccC-CCceEeeccCCCccccCC
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLM-HI-PN--LHWIVADDTLQCSPMISALLPKF-GIPYTHIASPMPPVYRTN 105 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~-~V-p~--l~WIVVEd~~~~s~~v~~lL~~s-gl~y~HL~~~~p~~~~~~ 105 (278)
.++|.|-||.|||.++.. .|.+.-+.|. +. ++ ..-|||+|+.+ .+....++++. ++.+.+. +
T Consensus 63 ~~~p~vSVIIp~yN~~~~--~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~-D~t~~~~~~~~~~v~vi~~--~-------- 129 (501)
T 2ffu_A 63 VDLPATSVVITFHNEARS--ALLRTVVSVLKKSPPHLIKEIILVDDYSN-DPEDGALLGKIEKVRVLRN--D-------- 129 (501)
T ss_dssp SSCCCEEEEEEESSCCHH--HHHHHHHHHHHHSCGGGEEEEEEEECSCS-CTHHHHGGGGBTTEEEEEC--S--------
T ss_pred cCCCCEEEEEEeCcCcHH--HHHHHHHHHHhhCchhhceeEEEEECCCC-chHHHHHHhcCCCEEEEEC--C--------
Confidence 468999999999998752 3333333322 22 34 48899999976 34445555542 2333222 1
Q ss_pred CCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 106 NAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 106 ~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
...|. ..||.|++.. ..-+|.|.|+|..++...+++|
T Consensus 130 ---~n~G~~~A~N~G~~~A----~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 130 ---RREGLMRSRVRGADAA----QAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp ---SCCHHHHHHHHHHHHC----CSSEEEECCSSEEECTTCHHHH
T ss_pred ---CCcCHHHHHHHHHHhc----CCCEEEEECCCcccCccHHHHH
Confidence 12344 6699998773 3458999999999888777764
No 13
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=95.21 E-value=0.0033 Score=63.19 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCeEEEEccCCCcccchHHHHH--HhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccC------CCceEeeccCCCccccC
Q psy12243 33 LPIIYFITPTYPRREQVAELTR--LGQTLMHIPNLHWIVADDTLQCSPMISALLPKF------GIPYTHIASPMPPVYRT 104 (278)
Q Consensus 33 ~p~I~vVTPTy~R~~Q~a~LtR--La~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~s------gl~y~HL~~~~p~~~~~ 104 (278)
+|.|-||.|||.+..-..+... ++|| .+++-.|||+|+++ +.+.+++++. ++.+.+.. .
T Consensus 1 Mp~vSVIIp~yN~~~~L~~~L~Sll~Qt---~~~~EIIVVDDgSt--D~t~~il~~~~~~~~~~i~~i~~~----~---- 67 (729)
T 3l7i_A 1 MNKLTIIVTYYNAEEYITGCLESIKQQR---TQDFNLIIVNDGST--DQSKKLMDEAIKDYDKNIRFIDLD----E---- 67 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCCCHHHHHHHHHHHHhCC---CCCeEEEEEECCCC--CcHHHHHHHHHHhCCCCEEEEECC----C----
Confidence 4788999999998632222111 2333 35889999999973 5566666653 33333321 1
Q ss_pred CCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 105 NNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 105 ~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
..|. ..||.|++..+ .-.|.|.|+|..++...++++-
T Consensus 68 -----n~G~~~arN~gi~~A~----gdyI~flD~Dd~~~p~~l~~l~ 105 (729)
T 3l7i_A 68 -----NSGHAHARNIALEEVE----TPYFMFLDADDELASYAITFYL 105 (729)
T ss_dssp -----------------------------------------------
T ss_pred -----CCCHHHHHHHHHHhcc----CCEEEEECCCCCCChhHHHHHH
Confidence 2233 56999987752 2488999999999998888743
No 14
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=94.65 E-value=0.1 Score=51.17 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhc-C-CCCe--EEEEEeCCCCCCHHHHHhhc----cC-CCceEeeccCCCcc
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLM-H-IPNL--HWIVADDTLQCSPMISALLP----KF-GIPYTHIASPMPPV 101 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~-~-Vp~l--~WIVVEd~~~~s~~v~~lL~----~s-gl~y~HL~~~~p~~ 101 (278)
..+|.|-||.|||.+. ...|.+.-+.|. + -+++ .-|||+|+.+ .+.+.++|+ +. ++.+.+.. .
T Consensus 109 ~~~P~vSVIIp~yNe~--~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~-D~tl~~~l~~~~~~~~~v~vi~~~----~- 180 (570)
T 2d7i_A 109 ETLPNTSIIIPFHNEG--WSSLLRTVHSVLNRSPPELVAEIVLVDDFSD-REHLKKPLEDYMALFPSVRILRTK----K- 180 (570)
T ss_dssp SSCCCEEEEEEESSCC--HHHHHHHHHHHHHHSCGGGEEEEEEEECSCC-CGGGTHHHHHHHTTSTTEEEEECS----S-
T ss_pred CCCCCeEEEEEECCCC--HHHHHHHHHHHHhcCCccCcEEEEEEECCCC-cHHHHHHHHHHHHhCCeEEEEECC----C-
Confidence 4589999999999986 223334333332 1 2344 8899999975 332133333 22 23332221 1
Q ss_pred ccCCCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHH
Q psy12243 102 YRTNNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 102 ~~~~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFde 148 (278)
..|. ..||.|++.. ..-+|.|.|+|..++...+++
T Consensus 181 --------n~G~~~A~N~G~~~A----~gd~i~fLD~D~~~~p~~L~~ 216 (570)
T 2d7i_A 181 --------REGLIRTRMLGASVA----TGDVITFLDSHCEANVNWLPP 216 (570)
T ss_dssp --------CCCHHHHHHHHHHHC----CSSEEEECCSSEEECTTCSHH
T ss_pred --------CCCHHHHHHHHHHhc----CCCEEEEEcCCccccccHHHH
Confidence 2244 6699998873 345899999999987765554
No 15
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=92.40 E-value=0.29 Score=50.18 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=63.7
Q ss_pred CCCCeEEEEccCCCcccchHHHHHHhhhhcC--CCC--eEEEEEeCCCCCC-----------------HHHHHhhccCCC
Q psy12243 31 KDLPIIYFITPTYPRREQVAELTRLGQTLMH--IPN--LHWIVADDTLQCS-----------------PMISALLPKFGI 89 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~--l~WIVVEd~~~~s-----------------~~v~~lL~~sgl 89 (278)
+..|.|-||.|||...... |.+.-.++.. -|+ +.-|||+|+.+.. +.+.++.++.++
T Consensus 137 ~~~P~VSViIPtyNe~~~l--L~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v 214 (802)
T 4hg6_A 137 EELPTVDILVPSYNEPADM--LSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGV 214 (802)
T ss_dssp TTCCCEEEEEECTTCCHHH--HHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCcEEEEEEECCCCHHH--HHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCc
Confidence 4578999999999876432 1222233322 354 8999999986311 123334455677
Q ss_pred ceEeeccCCCccccCCCCCCCcch-HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHh
Q psy12243 90 PYTHIASPMPPVYRTNNAVPPRGV-ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 90 ~y~HL~~~~p~~~~~~~~~~~rg~-~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdem 149 (278)
.|.+..-. .+|- .++|.|++.. ..-+|.|.|+|...+.+.+++|
T Consensus 215 ~~i~~~~~------------~~GKa~alN~gl~~a----~gd~Il~lDaD~~~~pd~L~~l 259 (802)
T 4hg6_A 215 VYSTRERN------------EHAKAGNMSAALERL----KGELVVVFDADHVPSRDFLART 259 (802)
T ss_dssp EEEECSSC------------CSHHHHHHHHHHHHC----CCSEEEECCTTEEECTTHHHHH
T ss_pred EEEEecCC------------CCcchHHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 66554211 1232 5799998763 3458899999999998877763
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=91.07 E-value=0.98 Score=42.99 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=60.1
Q ss_pred EEEccCCCcccchHHHH-HHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhc--------cCCCceEeeccCCCccccCCCC
Q psy12243 37 YFITPTYPRREQVAELT-RLGQTLMHIPNLHWIVADDTLQCSPMISALLP--------KFGIPYTHIASPMPPVYRTNNA 107 (278)
Q Consensus 37 ~vVTPTy~R~~Q~a~Lt-RLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~--------~sgl~y~HL~~~~p~~~~~~~~ 107 (278)
+||=|+|.- ..+.+. ++...+. .|+..-|||+|+++ +-|.++++ ..|+....+..+.+.
T Consensus 3 lVIiP~~eE--~I~~vl~~l~~~~~-~~~~EIIVVDDGSt--D~T~eia~~la~~~~~~~g~~vi~~~~~r~~------- 70 (397)
T 2bo4_A 3 LVVFPFKHE--HPEVLLHNVRVAAA-HPRVHEVLCIGYER--DQTYEAVERAAPEISRATGTPVSVRLQERLG------- 70 (397)
T ss_dssp EEEEECCSS--CHHHHHHHHHHHHH-STTCCEEEEEESSC--CHHHHHHHHHHHHHHHHHSCCEEEEECCCCS-------
T ss_pred EEEEeCCcc--CHHHHHHHHHHhcc-CCCeEEEEEECcCC--ccHHHHHHHhhhhcccccCCeEEEEecccCC-------
Confidence 466677752 223222 2221111 35677899999974 56777877 557766544322110
Q ss_pred CCCcch-HHHHHHHHHHH-HhCCCcEEEEecCCCc-cchhhhHHh
Q psy12243 108 VPPRGV-ANRRAALAWIR-SYVKSGVVYFGDDDNT-FDLKLFDEI 149 (278)
Q Consensus 108 ~~~rg~-~qRN~AL~~Ir-~~~~~GVVyFADDDNt-Ydl~LFdem 149 (278)
...+|- .+-+.|++|.. ..+. -+|.|.|-|.. |+.+...+|
T Consensus 71 ~~n~GkG~Al~~G~~~Al~~a~g-d~vv~mDADlq~~~P~~i~~L 114 (397)
T 2bo4_A 71 TLRPGKGDGMNTALRYFLEETQW-ERIHFYDADITSFGPDWITKA 114 (397)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCCC-SEEEECCTTCSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCHHHHHHH
Confidence 002243 56888998876 4443 47889999996 899887774
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=85.71 E-value=4 Score=38.16 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=66.5
Q ss_pred EEEccCCCcccchHHHHHHhhhhcCC----CCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcc
Q psy12243 37 YFITPTYPRREQVAELTRLGQTLMHI----PNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRG 112 (278)
Q Consensus 37 ~vVTPTy~R~~Q~a~LtRLa~TL~~V----p~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg 112 (278)
=||-+||.|+. |.|.-..|... .+..=||.+|+. ...|.++++.-+.+.+|.-.+ ...+.. .....+|
T Consensus 5 pViI~~yNRp~----l~~~L~sL~~~~p~~~~~~iivsdDgs--~~~~~~vi~~~~~~I~~~~~~-d~~~~~-~~~~N~g 76 (343)
T 1fo8_A 5 PILVIACDRST----VRRCLDKLLHYRPSAELFPIIVSQDCG--HEETAQVIASYGSAVTHIRQP-DLSNIA-VQPDHRK 76 (343)
T ss_dssp CEEEEESSCTT----HHHHHHHHHHHCSCTTTSCEEEEECTT--CHHHHHHHHTTGGGSEEEECS-CCCCCC-CCTTCGG
T ss_pred cEEEEECCcHH----HHHHHHHHHhcCCCcCCcEEEEEECCC--CHHHHHHHHHcCCceEEEEcC-Cccccc-cchhhcC
Confidence 35667899993 44444444433 245778999986 578999999877666665221 001110 0112345
Q ss_pred h-------HHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhhc
Q psy12243 113 V-------ANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIRD 151 (278)
Q Consensus 113 ~-------~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR~ 151 (278)
. .....||.++=+....+-|.|-|||-.-+..+|+-|.+
T Consensus 77 ~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 77 FQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred cccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 4 34566777765544567888999999999888865443
No 18
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=82.34 E-value=4.1 Score=36.67 Aligned_cols=82 Identities=12% Similarity=0.000 Sum_probs=52.2
Q ss_pred CCCCeEEEEccCCCcccchHHH-HHHhhhhc-CCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCC
Q psy12243 31 KDLPIIYFITPTYPRREQVAEL-TRLGQTLM-HIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAV 108 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~L-tRLa~TL~-~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~ 108 (278)
.+.|.|-||.|||.|......+ ..|...|. .-+++.=|||+|++.. .|
T Consensus 62 ~~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d~------------------------~f------ 111 (287)
T 2fy7_A 62 VSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDT------------------------IF------ 111 (287)
T ss_dssp BCSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS------------------------CC------
T ss_pred CcCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCC------------------------cc------
Confidence 3568999999999998665432 33332111 2457888999994321 01
Q ss_pred CCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchh
Q psy12243 109 PPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLK 144 (278)
Q Consensus 109 ~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~ 144 (278)
. ....||.|+..--+....-+|.|.|+|-.....
T Consensus 112 -~-~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 112 -N-RAKLLNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp -C-HHHHHHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred -c-hhhhhhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 1 135699988433234444588999999887766
No 19
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=75.26 E-value=7 Score=33.46 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=48.1
Q ss_pred CCCCeEEEEccCCCcccchHH-HHHHhhhhcCCCCeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCC
Q psy12243 31 KDLPIIYFITPTYPRREQVAE-LTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVP 109 (278)
Q Consensus 31 ~~~p~I~vVTPTy~R~~Q~a~-LtRLa~TL~~Vp~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~ 109 (278)
.+.+.|-|| |||........ |..|.+.|..-..+--|||+++++.. . +
T Consensus 13 ~~~~~iSII-~~yN~~~~l~~~l~sl~~sl~~q~~~EiIVVDn~s~d~---------~-------------------g-- 61 (249)
T 2nxv_A 13 ESTLMFSVC-SLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQ---------F-------------------H-- 61 (249)
T ss_dssp CCCCSEEEE-EEESCHHHHHHHHHHHHHTTCCTTTEEEEEEECTTSCS---------C-------------------C--
T ss_pred CCcceEEEE-EeeCCHHHHHHHHHHHHHhccCCCcEEEEEEECCCCCc---------c-------------------c--
Confidence 344566666 56987533322 22222233221127789999876310 0 0
Q ss_pred CcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhHHhh
Q psy12243 110 PRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFDEIR 150 (278)
Q Consensus 110 ~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFdemR 150 (278)
-..+||.|++. ...-.|.|.|+|-..+...+++|.
T Consensus 62 --~a~a~N~Gi~~----A~g~yl~fln~D~~~~~~~l~~l~ 96 (249)
T 2nxv_A 62 --GFSWHKQMLPR----CKGRYVIFCHEDVELVDRGYDDLV 96 (249)
T ss_dssp --TTTHHHHHGGG----CCSSEEEEEETTEECSSCCHHHHH
T ss_pred --HHHHHHHHHHh----cCCCEEEEECCCcccCccHHHHHH
Confidence 12679999764 233488999999988887776643
No 20
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=65.32 E-value=4.5 Score=38.99 Aligned_cols=91 Identities=24% Similarity=0.192 Sum_probs=57.2
Q ss_pred CeEEEEccCCCcccchHHHHHHhhhhcCCC-CeEEEEEeCCCCCCHHH---HHhhcc------CCCceEeeccCCCcccc
Q psy12243 34 PIIYFITPTYPRREQVAELTRLGQTLMHIP-NLHWIVADDTLQCSPMI---SALLPK------FGIPYTHIASPMPPVYR 103 (278)
Q Consensus 34 p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~l~WIVVEd~~~~s~~v---~~lL~~------sgl~y~HL~~~~p~~~~ 103 (278)
.-+-+|.|.|.=..+ | |-..|..+| +.-+|||+||.. +.. .++|++ +.+...
T Consensus 53 ~klSIVVPvYNEe~~---l--LesVl~qi~~d~eIIlVdDGS~--D~s~~e~dil~~~~~~~~~ri~vi----------- 114 (391)
T 2wvl_A 53 EQTAIVVPTRNERLK---L--LEGVLSGIPHEALILVASNSSP--DRFQMERDLLEEFAHLTERPALIF----------- 114 (391)
T ss_dssp TTEEEEEEESSCCHH---H--HHHHHHTSCTTSEEEEEECCCH--HHHHHHHHHHHHHHHHTTCCEEEE-----------
T ss_pred hceEEEEeccCcHHH---H--HHHHHhcCCCCceEEEEECCCC--CChHhHHHHHHHHHhhcccceEEE-----------
Confidence 346789999985532 2 555666677 899999999972 333 334433 233333
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhC------------------------------CCcEEEEecCCCccchhhhHHhhcc
Q psy12243 104 TNNAVPPRGVANRRAALAWIRSYV------------------------------KSGVVYFGDDDNTFDLKLFDEIRDT 152 (278)
Q Consensus 104 ~~~~~~~rg~~qRN~AL~~Ir~~~------------------------------~~GVVyFADDDNtYdl~LFdemR~~ 152 (278)
+|.|.||...|++. ..=.|-|.|-||..+-...+.++..
T Consensus 115 ----------HQkn~gls~Ar~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~v~Eyvk~y 183 (391)
T 2wvl_A 115 ----------HQKDPALAEALRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYVRAY 183 (391)
T ss_dssp ----------ETTCHHHHHHHHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHHHHHHHHHH
T ss_pred ----------eccChHHHHHHHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccCHHHHHHHH
Confidence 44444444444320 2237899999999988887777543
No 21
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=49.97 E-value=28 Score=24.12 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=47.1
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhH
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFD 147 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFd 147 (278)
+||||.........+.|++.|...... . .-..|++.++++.-+-||.=.+..+.-.+++.+
T Consensus 5 liv~~~~~~~~~l~~~l~~~g~~v~~~--~-----------------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~ 65 (119)
T 2j48_A 5 LLLEEEDEAATVVCEMLTAAGFKVIWL--V-----------------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQ 65 (119)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEE--S-----------------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhCCcEEEEe--c-----------------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence 577887766677888898888643321 1 134578888887766555444444444567777
Q ss_pred Hhhccceeeeeeeeeee
Q psy12243 148 EIRDTKKISMFPVGLIG 164 (278)
Q Consensus 148 emR~~k~vgvWPVGlvg 164 (278)
++|+.....--||-+++
T Consensus 66 ~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 66 HLREHQADPHPPLVLFL 82 (119)
T ss_dssp HHHHTCCCSSCCCEEEE
T ss_pred HHHhccccCCCCEEEEe
Confidence 77765422333444444
No 22
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=45.47 E-value=41 Score=24.30 Aligned_cols=82 Identities=12% Similarity=0.028 Sum_probs=48.7
Q ss_pred eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchh
Q psy12243 65 LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLK 144 (278)
Q Consensus 65 l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~ 144 (278)
..=+||||.........++|++.|...... . .-..|++.++++.-+-|+.=.+..+.=.++
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--~-----------------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~ 67 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIA--H-----------------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLD 67 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--S-----------------SHHHHHHHHHHTCCSEEEEESCBTTBCHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEe--C-----------------CHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence 344788888776677888898877643321 1 134578888777665444433333444567
Q ss_pred hhHHhhccceeeeeeeeeeec
Q psy12243 145 LFDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 145 LFdemR~~k~vgvWPVGlvg~ 165 (278)
+.+++|+......-||-+++.
T Consensus 68 ~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 68 VIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHHHHHTTTCSSCCEEEEECC
T ss_pred HHHHHHhcCccCCCeEEEEeC
Confidence 777787765333444544443
No 23
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=45.03 E-value=19 Score=34.18 Aligned_cols=92 Identities=17% Similarity=0.046 Sum_probs=58.2
Q ss_pred CCeEEEE--ccCCCcccchHHHHHHhhhhcC---CCCeEEEEEeCCCC-CCHHHHHhhccCCCceEeeccCCCc--cccC
Q psy12243 33 LPIIYFI--TPTYPRREQVAELTRLGQTLMH---IPNLHWIVADDTLQ-CSPMISALLPKFGIPYTHIASPMPP--VYRT 104 (278)
Q Consensus 33 ~p~I~vV--TPTy~R~~Q~a~LtRLa~TL~~---Vp~l~WIVVEd~~~-~s~~v~~lL~~sgl~y~HL~~~~p~--~~~~ 104 (278)
...|++- |||+-.+.+ |.+|...++. ++....|-||..+. .++...+.|++.|+...++++.+-. ..+.
T Consensus 105 i~~i~fgGGtpt~l~~~~---l~~ll~~i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~ 181 (457)
T 1olt_A 105 VSQLHWGGGTPTYLNKAQ---ISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRL 181 (457)
T ss_dssp EEEEEEEESCGGGSCHHH---HHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHH
T ss_pred eEEEEEeCCCcccCCHHH---HHHHHHHHHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHH
Confidence 3455554 888765444 4444444443 44556777786554 4678899999999999999886432 1111
Q ss_pred CCCCCCcchHHHHHHHHHHHHhCCC
Q psy12243 105 NNAVPPRGVANRRAALAWIRSYVKS 129 (278)
Q Consensus 105 ~~~~~~rg~~qRN~AL~~Ir~~~~~ 129 (278)
-.+.....+--.|++.+|+....
T Consensus 182 --i~R~~~~~~~~~ai~~~r~~G~~ 204 (457)
T 1olt_A 182 --VNREQDEEFIFALLNHAREIGFT 204 (457)
T ss_dssp --HTCCCCHHHHHHHHHHHHHTTCC
T ss_pred --hCCCCCHHHHHHHHHHHHHcCCC
Confidence 01123457778899999987444
No 24
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=41.57 E-value=38 Score=24.84 Aligned_cols=81 Identities=9% Similarity=0.059 Sum_probs=48.5
Q ss_pred EEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhh
Q psy12243 66 HWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKL 145 (278)
Q Consensus 66 ~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~L 145 (278)
.=+||||.........++|++.|..... +. .-..|++.++++.-+-||.=.+..+.-.+++
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~g~~v~~--~~-----------------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~ 69 (142)
T 3cg4_A 9 DVMIVDDDAHVRIAVKTILSDAGFHIIS--AD-----------------SGGQCIDLLKKGFSGVVLLDIMMPGMDGWDT 69 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEE--ES-----------------SHHHHHHHHHTCCCEEEEEESCCSSSCHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCeEEEE--eC-----------------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 3368888877667888899988754221 11 1345888888776544443333333445677
Q ss_pred hHHhhccceeeeeeeeeeec
Q psy12243 146 FDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 146 FdemR~~k~vgvWPVGlvg~ 165 (278)
.+++|+.....--||=++++
T Consensus 70 ~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 70 IRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp HHHHHHTTCCTTEEEEEEEC
T ss_pred HHHHHhhcccCCCCEEEEEC
Confidence 88887743333456655554
No 25
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=39.98 E-value=45 Score=24.01 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=48.3
Q ss_pred EEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhh
Q psy12243 67 WIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLF 146 (278)
Q Consensus 67 WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LF 146 (278)
=+||||.........++|++.|..... +. .-..|++.++++.-+-|+.=.+-.+.=-+++.
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g~~v~~--~~-----------------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~ 66 (127)
T 3i42_A 6 ALIVEDYQAAAETFKELLEMLGFQADY--VM-----------------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALV 66 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTEEEEE--ES-----------------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEE--EC-----------------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 368888877677888899988753222 11 13458888888775544443333344456777
Q ss_pred HHhhccceeeeeeeeeeec
Q psy12243 147 DEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 147 demR~~k~vgvWPVGlvg~ 165 (278)
+++|+.....--||=++++
T Consensus 67 ~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 67 KQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHSCCSSCCEEEEEEC
T ss_pred HHHHhhhccCCCCEEEEEC
Confidence 7777653233345544443
No 26
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=38.64 E-value=32 Score=25.29 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=41.1
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhH
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFD 147 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFd 147 (278)
+||||.......+.++|++.|..... +. .-..|++.++++.-+-|| ..|.+ .+++.+
T Consensus 22 livdd~~~~~~~l~~~L~~~g~~v~~--~~-----------------~~~~al~~l~~~~~dlvi-~~~~~---g~~~~~ 78 (137)
T 2pln_A 22 LLIEKNSVLGGEIEKGLNVKGFMADV--TE-----------------SLEDGEYLMDIRNYDLVM-VSDKN---ALSFVS 78 (137)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEE--ES-----------------CHHHHHHHHHHSCCSEEE-ECSTT---HHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHcCcEEEE--eC-----------------CHHHHHHHHHcCCCCEEE-EcCcc---HHHHHH
Confidence 68888877667888899888764332 21 134588888887766666 33333 257788
Q ss_pred Hhhcc
Q psy12243 148 EIRDT 152 (278)
Q Consensus 148 emR~~ 152 (278)
+||+.
T Consensus 79 ~l~~~ 83 (137)
T 2pln_A 79 RIKEK 83 (137)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88765
No 27
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=38.48 E-value=41 Score=29.85 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHHHHHhhhhcCCCCeEEEEE-eCC-CCCCHHHHHhhccCC--CceEeeccCCCc--cccCCCCCCCcchHHHHHHHHHH
Q psy12243 50 AELTRLGQTLMHIPNLHWIVA-DDT-LQCSPMISALLPKFG--IPYTHIASPMPP--VYRTNNAVPPRGVANRRAALAWI 123 (278)
Q Consensus 50 a~LtRLa~TL~~Vp~l~WIVV-Ed~-~~~s~~v~~lL~~sg--l~y~HL~~~~p~--~~~~~~~~~~rg~~qRN~AL~~I 123 (278)
.+|..|...|..++.+.||-+ +-. ...++...+.|+++| +.+.|++..... ..+.- .++-..++--.+++.+
T Consensus 71 ~~l~~Ll~~l~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m--~r~~t~e~~~~~i~~l 148 (304)
T 2qgq_A 71 QALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLM--GRTKSSEELKKMLSSI 148 (304)
T ss_dssp CCHHHHHHHHHTSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHT--TCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHh--CCCCCHHHHHHHHHHH
Confidence 356677777777788889854 321 234778889999999 899999876432 12111 1122346667788888
Q ss_pred HHh
Q psy12243 124 RSY 126 (278)
Q Consensus 124 r~~ 126 (278)
++.
T Consensus 149 ~~~ 151 (304)
T 2qgq_A 149 RER 151 (304)
T ss_dssp HHH
T ss_pred Hhh
Confidence 885
No 28
>1ear_A Urease accessory protein UREE; chaperone, putative NI-chaperone, urease operon; 1.7A {Bacillus pasteurii} SCOP: b.107.1.1 d.58.38.1 PDB: 1eb0_A
Probab=37.27 E-value=45 Score=27.32 Aligned_cols=58 Identities=16% Similarity=0.363 Sum_probs=42.9
Q ss_pred EEEEccCCCcccchHHHHHHhhhh--cCCC-Ce--EEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccc
Q psy12243 36 IYFITPTYPRREQVAELTRLGQTL--MHIP-NL--HWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVY 102 (278)
Q Consensus 36 I~vVTPTy~R~~Q~a~LtRLa~TL--~~Vp-~l--~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~ 102 (278)
+++|||.- ..+|.|+|+-| ||+| .+ -|+.|.. ...+.++|++.|+.++....+-|..|
T Consensus 78 vl~i~~~d-----~~~l~r~ayhlGNRH~p~~i~~~~l~v~~----D~vl~~mL~~lg~~v~~~~~~fpe~~ 140 (147)
T 1ear_A 78 VYVIKPQT-----MQEMGKMAFEIGNRHTMCIIEDDEILVRY----DKTLEKLIDEVGVSYEQSERRFKEPF 140 (147)
T ss_dssp EEEEECSS-----HHHHHHHHHHHHHTTCCCEEETTEEEEEC----CHHHHHHHHHHTCEEEEEEECCCSCC
T ss_pred EEEEECCC-----HHHHHHHHHHHhCCCceeEEeCCEEEEcC----cHHHHHHHHHCCCeeEEEEecCCCCC
Confidence 34666642 34799999998 6888 22 5677765 35789999999999999987766544
No 29
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=36.36 E-value=56 Score=24.14 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=48.7
Q ss_pred EEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhh
Q psy12243 66 HWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKL 145 (278)
Q Consensus 66 ~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~L 145 (278)
.=+||||.........++|++.|.... .+. .-..|++.++++.-+-||.=.+..+.-.+++
T Consensus 10 ~iLivd~~~~~~~~l~~~L~~~g~~v~--~~~-----------------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~ 70 (147)
T 2zay_A 10 RIMLVDTQLPALAASISALSQEGFDII--QCG-----------------NAIEAVPVAVKTHPHLIITEANMPKISGMDL 70 (147)
T ss_dssp EEEEECTTGGGGHHHHHHHHHHTEEEE--EES-----------------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeEE--EeC-----------------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHH
Confidence 336888888777888999998775322 221 1345788888876665544333333344677
Q ss_pred hHHhhccceeeeeeeeeeec
Q psy12243 146 FDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 146 FdemR~~k~vgvWPVGlvg~ 165 (278)
.+++|+.....--||-++++
T Consensus 71 ~~~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 71 FNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp HHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHcCcccCCCCEEEEeC
Confidence 77887632223345555543
No 30
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=35.44 E-value=61 Score=23.53 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=46.9
Q ss_pred EEEEeCCCCCCHHHHHhhcc-CCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhh
Q psy12243 67 WIVADDTLQCSPMISALLPK-FGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKL 145 (278)
Q Consensus 67 WIVVEd~~~~s~~v~~lL~~-sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~L 145 (278)
=+||||.........++|++ .|....... ..-..|++.++++.-+-||.=.+-.+.=.+++
T Consensus 11 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~------------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~ 72 (143)
T 3cnb_A 11 ILIIEDDKEFADMLTQFLENLFPYAKIKIA------------------YNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSI 72 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCTTCEEEEE------------------CSHHHHHHHHHHTCCSEEEEETTCTTSCHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhccCccEEEEE------------------CCHHHHHHHHHhcCCCEEEEecccCCCcHHHH
Confidence 36888887766778888988 777632222 11345888888776554443333233334677
Q ss_pred hHHhhccceeeeeeeeeeec
Q psy12243 146 FDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 146 FdemR~~k~vgvWPVGlvg~ 165 (278)
.+++|+.....--||=++++
T Consensus 73 ~~~l~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 73 CHRIKSTPATANIIVIAMTG 92 (143)
T ss_dssp HHHHHTSTTTTTSEEEEEES
T ss_pred HHHHHhCccccCCcEEEEeC
Confidence 77777632222335444443
No 31
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=31.33 E-value=53 Score=23.89 Aligned_cols=80 Identities=10% Similarity=-0.006 Sum_probs=46.9
Q ss_pred eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCC-Cccch
Q psy12243 65 LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDD-NTFDL 143 (278)
Q Consensus 65 l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDD-NtYdl 143 (278)
..=+||||.........++|++.|....+.. . .-..|++.++++.-+-||.=.+.. +.-.+
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~-~-----------------~~~~a~~~~~~~~~dlii~d~~~~~~~~g~ 71 (140)
T 3cg0_A 10 PGVLIVEDGRLAAATLRIQLESLGYDVLGVF-D-----------------NGEEAVRCAPDLRPDIALVDIMLCGALDGV 71 (140)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHHTCEEEEEE-S-----------------SHHHHHHHHHHHCCSEEEEESSCCSSSCHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeeEEEE-C-----------------CHHHHHHHHHhCCCCEEEEecCCCCCCCHH
Confidence 3346888887666778888888776543321 1 134588888887655444433322 23346
Q ss_pred hhhHHhhccceeeeeeeeeeec
Q psy12243 144 KLFDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 144 ~LFdemR~~k~vgvWPVGlvg~ 165 (278)
++.+++|+. .--||=++++
T Consensus 72 ~~~~~l~~~---~~~~ii~ls~ 90 (140)
T 3cg0_A 72 ETAARLAAG---CNLPIIFITS 90 (140)
T ss_dssp HHHHHHHHH---SCCCEEEEEC
T ss_pred HHHHHHHhC---CCCCEEEEec
Confidence 777777765 2335444443
No 32
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.30 E-value=60 Score=23.72 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=49.9
Q ss_pred eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchh
Q psy12243 65 LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLK 144 (278)
Q Consensus 65 l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~ 144 (278)
..=+||||.........++|++.|...... . .-..|++.++++.-+-||.=.+..+.=-++
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~--~-----------------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 67 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMV--H-----------------SAAQALEQVARRPYAAMTVDLNLPDQDGVS 67 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEE--C-----------------SHHHHHHHHHHSCCSEEEECSCCSSSCHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEE--C-----------------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 445788998877778889999888653221 1 134688888887755444322223334567
Q ss_pred hhHHhhccceeeeeeeeeeec
Q psy12243 145 LFDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 145 LFdemR~~k~vgvWPVGlvg~ 165 (278)
+.+++|+.....--||=++.+
T Consensus 68 ~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 68 LIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHhCcccCCCCEEEEec
Confidence 777888743333345555554
No 33
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=30.92 E-value=48 Score=25.21 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=41.9
Q ss_pred eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHh--CCCcEEEEecCCCccc
Q psy12243 65 LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSY--VKSGVVYFGDDDNTFD 142 (278)
Q Consensus 65 l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~--~~~GVVyFADDDNtYd 142 (278)
+.=+||||.........++|++.|....+.. . .-..|++.++++ .-+-|+.=.+..+.--
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~-~-----------------~~~~al~~l~~~~~~~dliilD~~l~~~~g 98 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTA-A-----------------DGEEAVIKYKNHYPNIDIVTLXITMPKMDG 98 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEE-S-----------------SHHHHHHHHHHHGGGCCEEEECSSCSSSCH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEE-C-----------------CHHHHHHHHHhcCCCCCEEEEeccCCCccH
Confidence 4557889887766788888988886543222 1 134588888877 4343332222223334
Q ss_pred hhhhHHhhcc
Q psy12243 143 LKLFDEIRDT 152 (278)
Q Consensus 143 l~LFdemR~~ 152 (278)
+++.++||+.
T Consensus 99 ~~~~~~lr~~ 108 (157)
T 3hzh_A 99 ITCLSNIMEF 108 (157)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6677777653
No 34
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=29.87 E-value=43 Score=24.18 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=17.5
Q ss_pred EEEeCCCCCCHHHHHhhccCCCc
Q psy12243 68 IVADDTLQCSPMISALLPKFGIP 90 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~ 90 (278)
+||||.........++|++.|..
T Consensus 6 livdd~~~~~~~l~~~L~~~~~~ 28 (140)
T 1k68_A 6 FLVEDNKADIRLIQEALANSTVP 28 (140)
T ss_dssp EEECCCHHHHHHHHHHHHTCSSC
T ss_pred EEEeCCHHHHHHHHHHHHhcCCC
Confidence 57888776667788888888764
No 35
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=27.89 E-value=1.2e+02 Score=23.50 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=12.9
Q ss_pred cccccceee-CCeeeeee
Q psy12243 166 YGISSPVLR-KGNVIGFF 182 (278)
Q Consensus 166 ~~~EgPv~~-~gkVvgw~ 182 (278)
+....||.+ +|+++|--
T Consensus 107 ~~~~~PV~~~~g~viGvv 124 (142)
T 3by8_A 107 LRVFTPIYDENHKQIGVV 124 (142)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred EEEEEeEEcCCCCEEEEE
Confidence 456679987 69999864
No 36
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.86 E-value=54 Score=23.15 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=41.4
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCC-Cccchhhh
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDD-NTFDLKLF 146 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDD-NtYdl~LF 146 (278)
+||||.........+.|++.|..... +. .-..|++.++++.-+-|+.=.+-. +.-.+++.
T Consensus 9 livdd~~~~~~~l~~~L~~~g~~v~~--~~-----------------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~ 69 (127)
T 2gkg_A 9 LIVESDTALSATLRSALEGRGFTVDE--TT-----------------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLIC 69 (127)
T ss_dssp EEECSCHHHHHHHHHHHHHHTCEEEE--EC-----------------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhcCceEEE--ec-----------------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHH
Confidence 67888876667888889888765432 11 134578888877655554433322 33446777
Q ss_pred HHhhcc
Q psy12243 147 DEIRDT 152 (278)
Q Consensus 147 demR~~ 152 (278)
+++|+.
T Consensus 70 ~~l~~~ 75 (127)
T 2gkg_A 70 GKLKKD 75 (127)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 888765
No 37
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=27.65 E-value=78 Score=24.86 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=52.2
Q ss_pred CeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccch
Q psy12243 64 NLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDL 143 (278)
Q Consensus 64 ~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl 143 (278)
++.=+||||.+..-..+.++|++.|..-++.+.. | ..||+.++++.-+-|+.=..--+.==+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~--------------g----~~al~~~~~~~~DlillD~~MP~mdG~ 73 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADD--------------G----LTALPMLKKGDFDFVVTDWNMPGMQGI 73 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS--------------H----HHHHHHHHHHCCSEEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECC--------------H----HHHHHHHHhCCCCEEEEcCCCCCCCHH
Confidence 4555899999877788899999998754443311 2 237888888754433321111122235
Q ss_pred hhhHHhhccceeeeeeeeeeecc
Q psy12243 144 KLFDEIRDTKKISMFPVGLIGSY 166 (278)
Q Consensus 144 ~LFdemR~~k~vgvWPVGlvg~~ 166 (278)
++..+||+.....--||=++.+.
T Consensus 74 el~~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 74 DLLKNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp HHHHHHHHSTTTTTCCEEEEESS
T ss_pred HHHHHHHhCCCCCCCeEEEEECC
Confidence 77778887655555676666543
No 38
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=27.03 E-value=45 Score=24.19 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=43.9
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCC--Cccchhh
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDD--NTFDLKL 145 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDD--NtYdl~L 145 (278)
+||||.+........+|++.|.... .+. .-..|++.++++.-+-| +.|-. +.=-+++
T Consensus 6 Livdd~~~~~~~l~~~l~~~g~~v~--~~~-----------------~~~~al~~l~~~~~dlv--llD~~~p~~~g~~~ 64 (122)
T 3gl9_A 6 LLVDDSAVLRKIVSFNLKKEGYEVI--EAE-----------------NGQIALEKLSEFTPDLI--VLXIMMPVMDGFTV 64 (122)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEE--EES-----------------SHHHHHHHHTTBCCSEE--EECSCCSSSCHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHCCcEEE--EeC-----------------CHHHHHHHHHhcCCCEE--EEeccCCCCcHHHH
Confidence 6888887666778888888875432 222 13458888877655433 33422 2234567
Q ss_pred hHHhhccceeeeeeeeeeec
Q psy12243 146 FDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 146 FdemR~~k~vgvWPVGlvg~ 165 (278)
..++|+.....--||=++++
T Consensus 65 ~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 65 LKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHhcccccCCCEEEEec
Confidence 77777643322335544443
No 39
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.82 E-value=58 Score=24.64 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=43.9
Q ss_pred eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchh
Q psy12243 65 LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLK 144 (278)
Q Consensus 65 l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~ 144 (278)
..=+||||.........++|++.|..... +. .-..|++.++++.-+-||.=.+..+.--++
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~--~~-----------------~~~~al~~l~~~~~dlii~D~~l~~~~g~~ 68 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQTEH--VR-----------------NGREAVRFLSLTRPDLIISDVLMPEMDGYA 68 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEE--ES-----------------SHHHHHHHHTTCCCSEEEEESCCSSSCHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEEEE--eC-----------------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 34478888877677888899888754321 11 134588888776655554433334444567
Q ss_pred hhHHhhccc
Q psy12243 145 LFDEIRDTK 153 (278)
Q Consensus 145 LFdemR~~k 153 (278)
+.+++|+..
T Consensus 69 ~~~~lr~~~ 77 (154)
T 3gt7_A 69 LCRWLKGQP 77 (154)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHhCC
Confidence 777777653
No 40
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=26.47 E-value=1.4e+02 Score=22.69 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=12.9
Q ss_pred cccccceee-CCeeeeee
Q psy12243 166 YGISSPVLR-KGNVIGFF 182 (278)
Q Consensus 166 ~~~EgPv~~-~gkVvgw~ 182 (278)
+....||.+ +|+|+|--
T Consensus 102 ~~~~~PV~~~~g~viGvv 119 (131)
T 1p0z_A 102 LRGKSPIQDATGKVIGIV 119 (131)
T ss_dssp EEEEEEEECTTCCEEEEE
T ss_pred EEEEEeEECCCCCEEEEE
Confidence 556679986 69999863
No 41
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=26.41 E-value=83 Score=24.47 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=43.6
Q ss_pred eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecC--CCccc
Q psy12243 65 LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDD--DNTFD 142 (278)
Q Consensus 65 l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADD--DNtYd 142 (278)
+.=+||||.........++|++.|..-++.+. .=..||+.++++.-+-|+ .|- -+.=-
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~------------------~g~eAl~~~~~~~~Dlvl--lDi~mP~~~G 68 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATAS------------------RMQEALDIARKGQFDIAI--IDVNLDGEPS 68 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSC------------------CHHHHHHHHHHCCSSEEE--ECSSSSSCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEEC------------------CHHHHHHHHHhCCCCEEE--EecCCCCCCH
Confidence 44479999999889999999998865333321 123589999888655443 231 11112
Q ss_pred hhhhHHhhc
Q psy12243 143 LKLFDEIRD 151 (278)
Q Consensus 143 l~LFdemR~ 151 (278)
+++.+++|+
T Consensus 69 ~el~~~lr~ 77 (123)
T 2lpm_A 69 YPVADILAE 77 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 467777875
No 42
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=26.40 E-value=52 Score=24.07 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=44.0
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHh---------CCCcEEEEecCC
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSY---------VKSGVVYFGDDD 138 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~---------~~~GVVyFADDD 138 (278)
+||||.........++|++.|..+.-..+ ..-..|++.++++ ....+ .+.|-+
T Consensus 10 Livdd~~~~~~~l~~~L~~~g~~~~v~~~-----------------~~~~~al~~l~~~~~~~~~~~~~~~dl-vi~D~~ 71 (149)
T 1k66_A 10 LVVEDSDEDFSTFQRLLQREGVVNPIYRC-----------------ITGDQALDFLYQTGSYCNPDIAPRPAV-ILLDLN 71 (149)
T ss_dssp EEECCCHHHHHHHHHHHHHTTBCSCEEEE-----------------CSHHHHHHHHHTCCSSSCGGGCCCCSE-EEECSC
T ss_pred EEEECCHHHHHHHHHHHHHcCCCceEEEE-----------------CCHHHHHHHHHhcccccCcccCCCCcE-EEEECC
Confidence 67888877667788889888763211111 1245588888862 12223 333432
Q ss_pred --CccchhhhHHhhccceeeeeeeeeeec
Q psy12243 139 --NTFDLKLFDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 139 --NtYdl~LFdemR~~k~vgvWPVGlvg~ 165 (278)
+.-.+++.++||+.....--||=++++
T Consensus 72 l~~~~g~~~~~~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 72 LPGTDGREVLQEIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp CSSSCHHHHHHHHTTSTTGGGSCEEEEES
T ss_pred CCCCCHHHHHHHHHhCcccCCCeEEEEeC
Confidence 333467777777653223335544443
No 43
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=25.78 E-value=1.1e+02 Score=21.79 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=41.2
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhH
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFD 147 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFd 147 (278)
+||||.+.......++|++.|..... +. .-..|++.++++.-+-|+.=.+-.+.=-+++..
T Consensus 6 livdd~~~~~~~l~~~L~~~g~~v~~--~~-----------------~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~ 66 (120)
T 3f6p_A 6 LVVDDEKPIADILEFNLRKEGYEVHC--AH-----------------DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCR 66 (120)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEE--ES-----------------SHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCEEEEE--eC-----------------CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHH
Confidence 68888876667788888888754322 21 123588888877655444433333333467778
Q ss_pred Hhhccc
Q psy12243 148 EIRDTK 153 (278)
Q Consensus 148 emR~~k 153 (278)
++|+..
T Consensus 67 ~lr~~~ 72 (120)
T 3f6p_A 67 EVRKKY 72 (120)
T ss_dssp HHHTTC
T ss_pred HHHhcC
Confidence 887643
No 44
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=25.71 E-value=90 Score=22.98 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=47.0
Q ss_pred EEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhh
Q psy12243 66 HWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKL 145 (278)
Q Consensus 66 ~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~L 145 (278)
.=+||||.........++|++.|.... .+. .=..||+.++++.-+-|+.=.+-.+.=-+++
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~--~~~-----------------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~ 66 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLELVLRGAGYEVR--RAA-----------------SGEEALQQIYKNLPDALICDVLLPGIDGYTL 66 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE--EES-----------------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEE--EeC-----------------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHH
Confidence 347889887766788889988875432 221 1235888888776554443222233334677
Q ss_pred hHHhhccceeeeeeeeeeec
Q psy12243 146 FDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 146 FdemR~~k~vgvWPVGlvg~ 165 (278)
.+++|+...-.--||=++++
T Consensus 67 ~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 67 CKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp HHHHHHSGGGTTCCEEEEEC
T ss_pred HHHHHcCCCcCCccEEEEec
Confidence 88887643222234544443
No 45
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.54 E-value=1e+02 Score=23.05 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=42.7
Q ss_pred eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchh
Q psy12243 65 LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLK 144 (278)
Q Consensus 65 l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~ 144 (278)
..=+||||.........++|++.|.... .+. .-..|++.++++.-+-||.=.+-.+.=.++
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~--~~~-----------------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~ 75 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLH--FAR-----------------DATQALQLLASREVDLVISAAHLPQMDGPT 75 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEE--EES-----------------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEE--EEC-----------------CHHHHHHHHHcCCCCEEEEeCCCCcCcHHH
Confidence 4557888887767788889998875322 111 135588888877655444433333334467
Q ss_pred hhHHhhc
Q psy12243 145 LFDEIRD 151 (278)
Q Consensus 145 LFdemR~ 151 (278)
+.++||+
T Consensus 76 ~~~~l~~ 82 (153)
T 3hv2_A 76 LLARIHQ 82 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777776
No 46
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.40 E-value=1.6e+02 Score=21.57 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=40.3
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecC--CCccchhh
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDD--DNTFDLKL 145 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADD--DNtYdl~L 145 (278)
+||||.........++|+..|.... .+. .-..|++.++++.-+-| +.|- .+.-.+++
T Consensus 8 Livdd~~~~~~~l~~~L~~~g~~v~--~~~-----------------~~~~a~~~l~~~~~dlv--llD~~l~~~~g~~l 66 (137)
T 3cfy_A 8 LLVEDSTSLAILYKQYVKDEPYDIF--HVE-----------------TGRDAIQFIERSKPQLI--ILDLKLPDMSGEDV 66 (137)
T ss_dssp EEECSCTTHHHHHHHHTTTSSSEEE--EES-----------------SHHHHHHHHHHHCCSEE--EECSBCSSSBHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhcCceEE--EeC-----------------CHHHHHHHHHhcCCCEE--EEecCCCCCCHHHH
Confidence 6889988777788889988775432 121 13458888887765533 3342 23334677
Q ss_pred hHHhhcc
Q psy12243 146 FDEIRDT 152 (278)
Q Consensus 146 FdemR~~ 152 (278)
.+++|+.
T Consensus 67 ~~~l~~~ 73 (137)
T 3cfy_A 67 LDWINQN 73 (137)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 7888764
No 47
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=24.21 E-value=1.2e+02 Score=24.01 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=47.4
Q ss_pred EEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhh
Q psy12243 67 WIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLF 146 (278)
Q Consensus 67 WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LF 146 (278)
=+||||.........++|++.|......+ . .-..|++.++++.-+-|+.=.+-.+.--+++.
T Consensus 16 iLivdd~~~~~~~l~~~L~~~g~~v~~~~-~-----------------~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~ 77 (205)
T 1s8n_A 16 VLIAEDEALIRMDLAEMLREEGYEIVGEA-G-----------------DGQEAVELAELHKPDLVIMDVKMPRRDGIDAA 77 (205)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEEEE-S-----------------SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEe-C-----------------CHHHHHHHHhhcCCCEEEEeCCCCCCChHHHH
Confidence 36889887766778888988776433221 1 13458888887765544332222233346777
Q ss_pred HHhhccceeeeeeeeeeecc
Q psy12243 147 DEIRDTKKISMFPVGLIGSY 166 (278)
Q Consensus 147 demR~~k~vgvWPVGlvg~~ 166 (278)
.++|..... ||=++.+.
T Consensus 78 ~~l~~~~~~---pii~lt~~ 94 (205)
T 1s8n_A 78 SEIASKRIA---PIVVLTAF 94 (205)
T ss_dssp HHHHHTTCS---CEEEEEEG
T ss_pred HHHHhcCCC---CEEEEecC
Confidence 888765432 76666543
No 48
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=23.66 E-value=1.1e+02 Score=22.16 Aligned_cols=71 Identities=10% Similarity=-0.061 Sum_probs=41.1
Q ss_pred CeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHH-----hCCCcEEEEecCC
Q psy12243 64 NLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRS-----YVKSGVVYFGDDD 138 (278)
Q Consensus 64 ~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~-----~~~~GVVyFADDD 138 (278)
...=+||||..........+|++.|....-..+. .-..|++.+++ +.-+-|+.=.+-.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~-----------------~~~~a~~~l~~~~~~~~~~dlvi~D~~l~ 71 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVT-----------------SGNAAINKLNELYAAGRWPSIICIDINMP 71 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEES-----------------SHHHHHHHHHHHHTSSCCCSEEEEESSCS
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecC-----------------CHHHHHHHHHHhhccCCCCCEEEEcCCCC
Confidence 3555788988766677888888887632211121 13457888877 3334333322223
Q ss_pred CccchhhhHHhhc
Q psy12243 139 NTFDLKLFDEIRD 151 (278)
Q Consensus 139 NtYdl~LFdemR~ 151 (278)
+.=-+++..++|+
T Consensus 72 ~~~g~~~~~~l~~ 84 (146)
T 3ilh_A 72 GINGWELIDLFKQ 84 (146)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3334677777776
No 49
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=23.51 E-value=95 Score=22.11 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=39.2
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCC--Cccchhh
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDD--NTFDLKL 145 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDD--NtYdl~L 145 (278)
+||||.........++|++.|....... ..-..|++.++++.-+-| +.|-+ +.=.+++
T Consensus 8 livdd~~~~~~~l~~~l~~~~~~~v~~~------------------~~~~~a~~~~~~~~~dlv--i~D~~l~~~~g~~l 67 (128)
T 1jbe_A 8 LVVDDFSTMRRIVRNLLKELGFNNVEEA------------------EDGVDALNKLQAGGYGFV--ISDWNMPNMDGLEL 67 (128)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCCEEEE------------------SSHHHHHHHHTTCCCCEE--EEESCCSSSCHHHH
T ss_pred EEECCCHHHHHHHHHHHHHcCCcEEEee------------------CCHHHHHHHHHhcCCCEE--EEeCCCCCCCHHHH
Confidence 5778876655677788887765211111 113447777765543333 33422 2223566
Q ss_pred hHHhhccceeeeeeeeeeec
Q psy12243 146 FDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 146 FdemR~~k~vgvWPVGlvg~ 165 (278)
.+++|+.....--||-++++
T Consensus 68 ~~~l~~~~~~~~~~ii~~s~ 87 (128)
T 1jbe_A 68 LKTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp HHHHHC--CCTTCCEEEEES
T ss_pred HHHHHhhcccCCCcEEEEec
Confidence 77777643222335544443
No 50
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=23.34 E-value=98 Score=21.82 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=43.7
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhhhH
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKLFD 147 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~LFd 147 (278)
+||||.........++|++.|.... .+. .-..|++.++++.-+-|+.=.+-.+.=.+++.+
T Consensus 5 livdd~~~~~~~l~~~L~~~~~~v~--~~~-----------------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 65 (124)
T 1mb3_A 5 LIVEDNELNMKLFHDLLEAQGYETL--QTR-----------------EGLSALSIARENKPDLILMDIQLPEISGLEVTK 65 (124)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEE--EES-----------------CHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHHcCcEEE--EeC-----------------CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Confidence 5788887766778888988776432 121 123578888776654333322222222356777
Q ss_pred Hhhccceeeeeeeeeee
Q psy12243 148 EIRDTKKISMFPVGLIG 164 (278)
Q Consensus 148 emR~~k~vgvWPVGlvg 164 (278)
++|+.....--||=+++
T Consensus 66 ~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 66 WLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp HHHHSTTTTTSCEEEEC
T ss_pred HHHcCccccCCcEEEEE
Confidence 77764322233544444
No 51
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=23.28 E-value=65 Score=24.07 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=38.5
Q ss_pred eEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchh
Q psy12243 65 LHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLK 144 (278)
Q Consensus 65 l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~ 144 (278)
+.=+||||.........++|++.|-.|.-..+. .-..|++.++++.-+-||.=.+..+.--++
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~-----------------~~~~al~~l~~~~~dlii~D~~l~~~~g~~ 83 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAK-----------------NGQEAIQLLEKESVDIAILDVEMPVKTGLE 83 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEES-----------------SHHHHHHHHTTSCCSEEEECSSCSSSCHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEC-----------------CHHHHHHHhhccCCCEEEEeCCCCCCcHHH
Confidence 444788887765667777777765322222221 134577777666544443322223333456
Q ss_pred hhHHhhcc
Q psy12243 145 LFDEIRDT 152 (278)
Q Consensus 145 LFdemR~~ 152 (278)
+.+++|+.
T Consensus 84 ~~~~l~~~ 91 (150)
T 4e7p_A 84 VLEWIRSE 91 (150)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66777653
No 52
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=22.71 E-value=1e+02 Score=21.91 Aligned_cols=78 Identities=10% Similarity=0.191 Sum_probs=42.7
Q ss_pred EEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCC--Cccchh
Q psy12243 67 WIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDD--NTFDLK 144 (278)
Q Consensus 67 WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDD--NtYdl~ 144 (278)
=+||||.........++|++.|...... + ..-..|++.++++.-+ + .+.|-+ +.=.++
T Consensus 9 ilivdd~~~~~~~l~~~L~~~g~~~v~~-~-----------------~~~~~a~~~~~~~~~d-l-vl~D~~l~~~~g~~ 68 (129)
T 1p6q_A 9 VLIVDDQVTSRLLLGDALQQLGFKQITA-A-----------------GDGEQGMKIMAQNPHH-L-VISDFNMPKMDGLG 68 (129)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTCSCEEC-C-----------------SSHHHHHHHHHTSCCS-E-EEECSSSCSSCHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCcEEEe-c-----------------CCHHHHHHHHHcCCCC-E-EEEeCCCCCCCHHH
Confidence 3688888766677888888776521111 1 1134577777776543 3 344532 222356
Q ss_pred hhHHhhccceeeeeeeeeee
Q psy12243 145 LFDEIRDTKKISMFPVGLIG 164 (278)
Q Consensus 145 LFdemR~~k~vgvWPVGlvg 164 (278)
+..++|+.....--||-+++
T Consensus 69 ~~~~l~~~~~~~~~~ii~~s 88 (129)
T 1p6q_A 69 LLQAVRANPATKKAAFIILT 88 (129)
T ss_dssp HHHHHTTCTTSTTCEEEECC
T ss_pred HHHHHhcCccccCCCEEEEe
Confidence 77777765322233444444
No 53
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.39 E-value=84 Score=22.91 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=43.2
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHH------hCCCcEEEEecCCCcc
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRS------YVKSGVVYFGDDDNTF 141 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~------~~~~GVVyFADDDNtY 141 (278)
+||||.........++|++.|..+.-..+ ..-..|++.+++ +.-+-||.=.+..+.=
T Consensus 11 Livdd~~~~~~~l~~~L~~~g~~~~v~~~-----------------~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~ 73 (143)
T 2qvg_A 11 LYLEDDEVDIQSVERVFHKISSLIKIEIA-----------------KSGNQALDMLYGRNKENKIHPKLILLDINIPKMN 73 (143)
T ss_dssp EEECCCHHHHHHHHHHHHHHCTTCCEEEE-----------------SSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSC
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCceEEEE-----------------CCHHHHHHHHHhcccccCCCCCEEEEecCCCCCC
Confidence 67888876667788888888763111111 113458888886 3333333322222323
Q ss_pred chhhhHHhhccceeeeeeeeeeec
Q psy12243 142 DLKLFDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 142 dl~LFdemR~~k~vgvWPVGlvg~ 165 (278)
.+++.+++|+.....--||=++++
T Consensus 74 g~~~~~~l~~~~~~~~~~ii~ls~ 97 (143)
T 2qvg_A 74 GIEFLKELRDDSSFTDIEVFVLTA 97 (143)
T ss_dssp HHHHHHHHTTSGGGTTCEEEEEES
T ss_pred HHHHHHHHHcCccccCCcEEEEeC
Confidence 456677777653212335544443
No 54
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=22.04 E-value=64 Score=27.46 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=22.9
Q ss_pred HHHHHHHHHh---CCCcEEEEecCCCccchhhhHHh
Q psy12243 117 RAALAWIRSY---VKSGVVYFGDDDNTFDLKLFDEI 149 (278)
Q Consensus 117 N~AL~~Ir~~---~~~GVVyFADDDNtYdl~LFdem 149 (278)
-.||+++-++ ..+-+++|+|..| |++.|+..
T Consensus 211 ~~al~~l~~~lgi~~~~~ia~GD~~N--Di~ml~~a 244 (285)
T 3pgv_A 211 GHALEAVAKMLGYTLSDCIAFGDGMN--DAEMLSMA 244 (285)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSGG--GHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCcHh--hHHHHHhc
Confidence 4578887665 4467999999777 88888753
No 55
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=21.98 E-value=80 Score=23.23 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=47.3
Q ss_pred CeEEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCC--Ccc
Q psy12243 64 NLHWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDD--NTF 141 (278)
Q Consensus 64 ~l~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDD--NtY 141 (278)
+..=+||||.........++|++.|..+.-..+. .-..|++.++++.-+-| +.|-+ +.=
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~-----------------~~~~a~~~l~~~~~dli--i~D~~l~~~~ 65 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVD-----------------NGAKALYQVQQAKYDLI--ILDIGLPIAN 65 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEES-----------------SHHHHHHHHTTCCCSEE--EECTTCGGGC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEEC-----------------CHHHHHHHhhcCCCCEE--EEeCCCCCCC
Confidence 4455788988776778888999888764322221 13457777877655433 33432 223
Q ss_pred chhhhHHhhccceeeeeeeeeeec
Q psy12243 142 DLKLFDEIRDTKKISMFPVGLIGS 165 (278)
Q Consensus 142 dl~LFdemR~~k~vgvWPVGlvg~ 165 (278)
-+++.+++|+.....--||=++++
T Consensus 66 g~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 66 GFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHHHHHHHhcccccCCCEEEEeC
Confidence 456777777632222334444443
No 56
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=21.73 E-value=1.1e+02 Score=21.53 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=36.9
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCC--Cccchhh
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDD--NTFDLKL 145 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDD--NtYdl~L 145 (278)
+||||.........++|++.|....... . .-..|++.++++.-+-| +.|-+ +.-.+++
T Consensus 6 livdd~~~~~~~l~~~l~~~g~~vv~~~-~-----------------~~~~a~~~~~~~~~dli--l~D~~l~~~~g~~~ 65 (120)
T 1tmy_A 6 LIVDDAAFMRMMLKDIITKAGYEVAGEA-T-----------------NGREAVEKYKELKPDIV--TMDITMPEMNGIDA 65 (120)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEEEE-S-----------------SHHHHHHHHHHHCCSEE--EEECSCGGGCHHHH
T ss_pred EEEcCcHHHHHHHHHHHhhcCcEEEEEE-C-----------------CHHHHHHHHHhcCCCEE--EEeCCCCCCcHHHH
Confidence 5788887666777888887776432221 1 13457777877654433 33422 2223466
Q ss_pred hHHhhcc
Q psy12243 146 FDEIRDT 152 (278)
Q Consensus 146 FdemR~~ 152 (278)
.+++|+.
T Consensus 66 ~~~l~~~ 72 (120)
T 1tmy_A 66 IKEIMKI 72 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666653
No 57
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=21.56 E-value=1.4e+02 Score=21.38 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=42.9
Q ss_pred EEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCCCccchhh
Q psy12243 66 HWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDDNTFDLKL 145 (278)
Q Consensus 66 ~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDDNtYdl~L 145 (278)
.=++|||.........++|++.|....+ .+... ..|++.++++.-+-|+.=.+..+.=-+++
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~-~~~~~-----------------~~a~~~~~~~~~dlii~d~~l~~~~g~~~ 64 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILA-ELTEG-----------------GSAVQRVETLKPDIVIIDVDIPGVNGIQV 64 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEE-EESSS-----------------TTHHHHHHHHCCSEEEEETTCSSSCHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEE-EcCCH-----------------HHHHHHHHhcCCCEEEEecCCCCCChHHH
Confidence 3478899887778889999998843322 22210 12777787776665544433334445677
Q ss_pred hHHhhcc
Q psy12243 146 FDEIRDT 152 (278)
Q Consensus 146 FdemR~~ 152 (278)
.+++|+.
T Consensus 65 ~~~l~~~ 71 (134)
T 3f6c_A 65 LETLRKR 71 (134)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 7777764
No 58
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.49 E-value=95 Score=22.44 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=38.4
Q ss_pred EEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHhCCCcEEEEecCC-----Cccc
Q psy12243 68 IVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSYVKSGVVYFGDDD-----NTFD 142 (278)
Q Consensus 68 IVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~~~~GVVyFADDD-----NtYd 142 (278)
+||||.........++|++.|..... +. .-..|++.++++.-+-||.=.+.. +.-.
T Consensus 7 livdd~~~~~~~l~~~L~~~g~~v~~--~~-----------------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g 67 (140)
T 2qr3_A 7 IIVDDNKGVLTAVQLLLKNHFSKVIT--LS-----------------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEG 67 (140)
T ss_dssp EEECSCHHHHHHHHHHHTTTSSEEEE--EC-----------------CHHHHHHHHHHSCEEEEEEETTTTC-----CCH
T ss_pred EEEeCCHHHHHHHHHHHHhCCcEEEE--eC-----------------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccH
Confidence 67888876667788888888764331 11 134578888776644433322211 3334
Q ss_pred hhhhHHhhcc
Q psy12243 143 LKLFDEIRDT 152 (278)
Q Consensus 143 l~LFdemR~~ 152 (278)
+++..++|+.
T Consensus 68 ~~~~~~l~~~ 77 (140)
T 2qr3_A 68 LFWLHEIKRQ 77 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 5667777653
No 59
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.41 E-value=1.1e+02 Score=22.33 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=40.7
Q ss_pred EEEEEeCCCCCCHHHHHhhccCCCceEeeccCCCccccCCCCCCCcchHHHHHHHHHHHHh--CCCcEEEEecCCCccch
Q psy12243 66 HWIVADDTLQCSPMISALLPKFGIPYTHIASPMPPVYRTNNAVPPRGVANRRAALAWIRSY--VKSGVVYFGDDDNTFDL 143 (278)
Q Consensus 66 ~WIVVEd~~~~s~~v~~lL~~sgl~y~HL~~~~p~~~~~~~~~~~rg~~qRN~AL~~Ir~~--~~~GVVyFADDDNtYdl 143 (278)
.=+||||.........++|++.|.... .+. .-..|++.++++ .-+-|+.=.+..+.--+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~g~~v~--~~~-----------------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~ 65 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEIDGNEVL--TAS-----------------SSTEGLRIFTENCNSIDVVITDMKMPKLSGM 65 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE--EES-----------------SHHHHHHHHHHTTTTCCEEEEESCCSSSCHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCceEE--EeC-----------------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHH
Confidence 347888887767788889988884322 221 134588888753 44444333333344456
Q ss_pred hhhHHhhcc
Q psy12243 144 KLFDEIRDT 152 (278)
Q Consensus 144 ~LFdemR~~ 152 (278)
++.+++|+.
T Consensus 66 ~~~~~l~~~ 74 (143)
T 3jte_A 66 DILREIKKI 74 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777753
No 60
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=20.38 E-value=74 Score=26.42 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=21.9
Q ss_pred HHHHHHHHh---CCCcEEEEecCCCccchhhhHH
Q psy12243 118 AALAWIRSY---VKSGVVYFGDDDNTFDLKLFDE 148 (278)
Q Consensus 118 ~AL~~Ir~~---~~~GVVyFADDDNtYdl~LFde 148 (278)
.||+++-++ ..+=+++|+|..| |++.|+.
T Consensus 197 ~~l~~l~~~lgi~~~~~ia~GD~~N--Di~m~~~ 228 (268)
T 3r4c_A 197 TGLSLFADYYRVKVSEIMACGDGGN--DIPMLKA 228 (268)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECSGG--GHHHHHH
T ss_pred HHHHHHHHHcCCCHHHEEEECCcHH--hHHHHHh
Confidence 588888666 4456999999877 7777765
Done!