RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12243
         (278 letters)



>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 261

 Score =  282 bits (722), Expect = 2e-96
 Identities = 96/229 (41%), Positives = 128/229 (55%), Gaps = 20/229 (8%)

Query: 36  IYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYTHIA 95
           IY +TPTY R  Q AEL RL QTL  +P LHW++ +D    +P++S LL   G+ +TH+ 
Sbjct: 3   IYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLV 62

Query: 96  SPMPPVYRTNNAVP----PRGVANRRAALAWIRSYVK-------------SGVVYFGDDD 138
              P   R     P    PRGV  R  AL W+R                  GVVYF DDD
Sbjct: 63  VLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDD 122

Query: 139 NTFDLKLFDEIRDTKKISMFPVGLIGSYGISSPVLRKGNVIGFFDSWPAKRKFPVDMAGF 198
           NT+  +LF+E+R T+ +S++PVGL+G      P ++ G V+GF  +W   R FPVDMAGF
Sbjct: 123 NTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGF 182

Query: 199 AVNVDLILKHPNATMPYKA--GYEEDRFISSLGVKLSDIEPKANNCSEV 245
           AV + L+L  PNA     A  G+ E   +S L V   D+EP+A NC+ V
Sbjct: 183 AVALPLLLDKPNAQFDSTAPRGHLESSLLSHL-VDPKDLEPRAANCTRV 230


>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1,  GlcAT-P
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score =  273 bits (700), Expect = 3e-93
 Identities = 92/226 (40%), Positives = 132/226 (58%), Gaps = 14/226 (6%)

Query: 33  LPIIYFITPTYPRREQVAELTRLGQTLMHIPNLHWIVADDTLQCSPMISALLPKFGIPYT 92
           LP I+ +TPTY R  Q AELTR+  TL+H+PNLHW+V +D  + +P+ + LL   G+ YT
Sbjct: 1   LPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYT 60

Query: 93  HIASPMPPVYRTNNAVP----PRGVANRRAALAWIRSYVK-----SGVVYFGDDDNTFDL 143
           H+    P  Y+          PRG   R  AL W+R          GVVYF DDDNT+ L
Sbjct: 61  HLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSL 120

Query: 144 KLFDEIRDTKKISMFPVGLIGSYGISSPVLRK-GNVIGFFDSWPAKRKFPVDMAGFAVNV 202
           +LF+E+R T+++S++PV  +G     +P +   G V+ +   +   R F +DMAGFAVN+
Sbjct: 121 ELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVRWKTVFDPHRPFAIDMAGFAVNL 180

Query: 203 DLILKHPNATMPY---KAGYEEDRFISSLGVKLSDIEPKANNCSEV 245
            LIL+   A       K GY+E   +  L V L+D+EPKA NC+++
Sbjct: 181 RLILQRSQAYFKLRGVKGGYQESSLLREL-VTLNDLEPKAANCTKI 225


>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 589

 Score = 27.7 bits (61), Expect = 1.7
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 14/49 (28%)

Query: 7  LDQ-THDPITCTTSFKDLRLFHNV------------VKDLPIIYFITPT 42
          +DQ +   ++      D+     +            +  L  +Y ITP+
Sbjct: 30 VDQLSMRMLSSCCKMTDIMT-EGITIVEDINKRREPLPSLEAVYLITPS 77


>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
          (Loligo pealei) [TaxId: 6621]}
          Length = 590

 Score = 27.0 bits (59), Expect = 3.1
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 14/49 (28%)

Query: 7  LDQ-THDPITCTTSFKDLRLFHNV------------VKDLPIIYFITPT 42
          +DQ +   ++      ++     +            +  L  +Y ITPT
Sbjct: 29 VDQLSMRMVSACCKMHEIMS-EGITLVEDINRRREPLPLLEAVYLITPT 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,071,201
Number of extensions: 50426
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 5
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)