BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12244
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 101/158 (63%), Gaps = 28/158 (17%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASLRY 86
IRNFSIIAH+DHGKSTL+DR++++ G + +QVLDS+ +E+ERGIT+KAQ+ +L Y
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDY 63
Query: 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA------------------ 128
+ DGE Y LN IDTPGHVDFS EV+RSLAAC+G +L++DA
Sbjct: 64 KAS-DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 129 --------NQVDLKNANPEACEEQLQTLFNIDKKSVLR 158
N++DL A+PE E+++ + ID +R
Sbjct: 123 DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR 160
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASL 257
IRNFSIIAH+DHGKSTL+DR++++ G + +QVLDS+ +E+ERGIT+KAQ+ +L
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTL 61
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 101/158 (63%), Gaps = 28/158 (17%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASLRY 86
IRNFSIIAH+DHGKSTL+DR++++ G + +QVLDS+ +E+ERGIT+KAQ+ +L Y
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDY 63
Query: 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA------------------ 128
+ DGE Y LN IDTPGHVDFS EV+RSLAAC+G +L++DA
Sbjct: 64 KAS-DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 129 --------NQVDLKNANPEACEEQLQTLFNIDKKSVLR 158
N++DL A+PE E+++ + ID +R
Sbjct: 123 DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR 160
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASL 257
IRNFSIIAH+DHGKSTL+DR++++ G + +QVLDS+ +E+ERGIT+KAQ+ +L
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTL 61
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASLRY 86
+RNF IIAHVDHGKSTLADRLLE TG + Q+LD+L VE+ERGITVK Q + Y
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFY 65
Query: 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ DG Y L+LIDTPGHVDFS EV+R+LAAC+G +LLIDA+Q
Sbjct: 66 KA-KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ 108
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASL 257
+RNF IIAHVDHGKSTLADRLLE TG + Q+LD+L VE+ERGITVK Q +
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRM 63
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 79/104 (75%), Gaps = 2/104 (1%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASLRY 86
+RNF IIAHVDHGKSTLADRLLE TG + Q+LD+L VE+ERGITVK Q Y
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRXFY 65
Query: 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ DG Y L+LIDTPGHVDFS EV+R+LAAC+G +LLIDA+Q
Sbjct: 66 KA-KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ 108
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQ 253
+RNF IIAHVDHGKSTLADRLLE TG + Q+LD+L VE+ERGITVK Q
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQ 59
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 14/116 (12%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTA 82
+ +RN S+IAHVDHGKSTL D L++ G + +G ++ D+ + EQERGIT+K+
Sbjct: 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 83 SLRYTSI-----------LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
SL Y+ + DG +L+NLID+PGHVDFS+EVT +L G ++++D
Sbjct: 76 SL-YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 130
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTA 255
+ +RN S+IAHVDHGKSTL D L++ G + +G ++ D+ + EQERGIT+K+
Sbjct: 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 256 SL 257
SL
Sbjct: 76 SL 77
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 14/116 (12%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTA 82
+ +RN S+IAHVDHGKSTL D L++ G + +G ++ D+ + EQERGIT+K+
Sbjct: 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 83 SLRYTSI-----------LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
SL Y+ + DG +L+NLID+PGHVDFS+EVT +L G ++++D
Sbjct: 76 SL-YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 130
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTA 255
+ +RN S+IAHVDHGKSTL D L++ G + +G ++ D+ + EQERGIT+K+
Sbjct: 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 256 SL 257
SL
Sbjct: 76 SL 77
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 79
PIAR RN I AH+D GK+T +R+L TG G + +D ++ EQERGIT+ +
Sbjct: 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITS 65
Query: 80 QTASLRYTSILDG-EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLL 125
+ ++ + E + +N+IDTPGHVDF+ EV RS+ G V++
Sbjct: 66 AATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMV 112
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITV 250
PIAR RN I AH+D GK+T +R+L TG G + +D ++ EQERGIT+
Sbjct: 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITI 63
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 79
PIAR RN I AH+D GK+T +R+L TG G + +D ++ EQERGIT+ +
Sbjct: 5 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITS 64
Query: 80 QTASLRYTSILDG-EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLL 125
+ ++ + E + +N+IDTPGHVDF+ EV RS+ G V++
Sbjct: 65 AATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMV 111
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITV 250
PIAR RN I AH+D GK+T +R+L TG G + +D ++ EQERGIT+
Sbjct: 5 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITI 62
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 20/140 (14%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQ 80
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 81 TASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEA 140
+ + +++ +N+IDTPGHVDF+ EV RS+ G +++ D++Q
Sbjct: 69 VTTCFW------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---------G 113
Query: 141 CEEQLQTLF-NIDKKSVLRI 159
E Q +T++ +K V RI
Sbjct: 114 VEPQSETVWRQAEKYKVPRI 133
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 67
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 20/140 (14%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQ 80
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 81 TASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEA 140
+ + +++ +N+IDTPGHVDF+ EV RS+ G +++ D++Q
Sbjct: 69 VTTCFW------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---------G 113
Query: 141 CEEQLQTLF-NIDKKSVLRI 159
E Q +T++ +K V RI
Sbjct: 114 VEPQSETVWRQAEKYKVPRI 133
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 67
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 20/140 (14%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQ 80
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 81 TASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEA 140
+ + +++ +N+IDTPGHVDF+ EV RS+ G +++ D++Q
Sbjct: 69 VTTCFW------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---------G 113
Query: 141 CEEQLQTLF-NIDKKSVLRI 159
E Q +T++ +K V RI
Sbjct: 114 VEPQSETVWRQAEKYKVPRI 133
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 67
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 20/140 (14%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQ 80
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 81 TASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEA 140
+ + +++ +N+IDTPGHVDF+ EV RS+ G +++ D++Q
Sbjct: 69 VTTCFW------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---------G 113
Query: 141 CEEQLQTLF-NIDKKSVLRI 159
E Q +T++ +K V RI
Sbjct: 114 VEPQSETVWRQAEKYKVPRI 133
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 67
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 20/140 (14%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQ 80
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 81 TASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEA 140
+ + +++ +N+IDTPGHVDF+ EV RS+ G +++ D++Q
Sbjct: 69 VTTCFW------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---------G 113
Query: 141 CEEQLQTLF-NIDKKSVLRI 159
E Q +T++ +K V RI
Sbjct: 114 VEPQSETVWRQAEKYKVPRI 133
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 67
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 20/140 (14%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQ 80
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 81 TASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEA 140
+ + +++ +N+ID PGHVDF+ EV RS+ G +++ D++Q
Sbjct: 69 VTTCFW------KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ---------G 113
Query: 141 CEEQLQTLF-NIDKKSVLRI 159
E Q +T++ +K V RI
Sbjct: 114 VEPQSETVWRQAEKYKVPRI 133
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 67
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 20/140 (14%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQ 80
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 81 TASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEA 140
+ + +++ +N+ID PGHVDF+ EV RS+ G +++ D++Q
Sbjct: 69 VTTCFW------KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ---------G 113
Query: 141 CEEQLQTLF-NIDKKSVLRI 159
E Q +T++ +K V RI
Sbjct: 114 VEPQSETVWRQAEKYKVPRI 133
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 67
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 22/141 (15%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGITVKA 79
+ R+RN I AH+D GK+T +R+L TG + + G++ +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAA-TMDFMEQERERGITITA 67
Query: 80 QTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPE 139
+ + +++ +N+ID PGHVDF+ EV RS+ G +++ D++Q
Sbjct: 68 AVTTCFW------KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ--------- 112
Query: 140 ACEEQLQTLF-NIDKKSVLRI 159
E Q +T++ +K V RI
Sbjct: 113 GVEPQSETVWRQAEKYKVPRI 133
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + + G++ +D ++ E+ERGIT+ A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAA-TMDFMEQERERGITITA 67
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITV-K 78
PI R RN I AHVD GK+T +R+L TG G + D + EQERGIT+
Sbjct: 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITS 68
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLI 126
A + S + Y +N+IDTPGHVDF+ EV RSL G V++
Sbjct: 69 AAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVF 116
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITV 250
PI R RN I AHVD GK+T +R+L TG G + D + EQERGIT+
Sbjct: 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITI 66
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTA 82
+I N ++AHVD GK+TL + LL +G + GS + D+ +E++RGIT++
Sbjct: 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 60
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
S ++ E +N+IDTPGH+DF EV RSL+ G +LLI A
Sbjct: 61 SFQW------ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISA 100
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTA 255
+I N ++AHVD GK+TL + LL +G + GS + D+ +E++RGIT++
Sbjct: 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 60
Query: 256 SL 257
S
Sbjct: 61 SF 62
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 12/112 (10%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGIT 76
+ + + RN IIAH+D GK+T +R+L TG + G+SQ +D ++ EQ+RGIT
Sbjct: 4 EFSLEKTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGIT 62
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ + + + E + +N+IDTPGHVDF+ EV RSL G V ++DA
Sbjct: 63 ITSAATTAAW------EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDA 108
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERG 247
+ + + RN IIAH+D GK+T +R+L TG + G+SQ +D ++ EQ+RG
Sbjct: 4 EFSLEKTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRG 60
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 12/112 (10%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGIT 76
+ + + RN I+AH+D GK+T +R+L TG + G+SQ +D ++ EQ+RGIT
Sbjct: 4 EFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGIT 62
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ + + + E + +N+IDTPGHVDF+ EV RSL G V ++DA
Sbjct: 63 ITSAATTAAW------EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDA 108
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERG 247
+ + + RN I+AH+D GK+T +R+L TG + G+SQ +D ++ EQ+RG
Sbjct: 4 EFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRG 60
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 14/108 (12%)
Query: 29 RNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQ 80
R F+II+H D GK+TL ++LL ++ GT+ S +++ D ++E++RGI+V
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 81 TASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
Y ++YL+NL+DTPGH DF+ + R+L A + +IDA
Sbjct: 74 VXQFPY------KDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDA 115
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 202 RNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGITV 250
R F+II+H D GK+TL ++LL ++ GT+ S +++ D ++E++RGI+V
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISV 70
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 12/112 (10%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGIT 76
+ + + RN IIAH+D GK+T +R+L TG + G+SQ +D ++ EQ+RGIT
Sbjct: 4 EFSLEKTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGIT 62
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ + + + E + +N+IDTPGHVD + EV RSL G V ++DA
Sbjct: 63 ITSAATTAAW------EGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDA 108
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERG 247
+ + + RN IIAH+D GK+T +R+L TG + G+SQ +D ++ EQ+RG
Sbjct: 4 EFSLEKTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRG 60
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 14/112 (12%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQVL--DSLQVEQERGIT 76
+A+ R F+II+H D GK+T+ +++L + GTV GS+Q D +++E++RGI+
Sbjct: 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGIS 69
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + L+NL+DTPGH DFS + R+L A +++IDA
Sbjct: 70 ITTSVMQFPY------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDA 115
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 8/61 (13%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQVL--DSLQVEQERGIT 249
+A+ R F+II+H D GK+T+ +++L + GTV GS+Q D +++E++RGI+
Sbjct: 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGIS 69
Query: 250 V 250
+
Sbjct: 70 I 70
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 14/112 (12%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQVL--DSLQVEQERGIT 76
+A+ R F+II+H D GK+T+ +++L + GTV GS+Q D +++E++RGI+
Sbjct: 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGIS 69
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + L+NL+DTPGH DFS + R+L A +++IDA
Sbjct: 70 ITTSVMQFPY------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDA 115
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 8/61 (13%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQVL--DSLQVEQERGIT 249
+A+ R F+II+H D GK+T+ +++L + GTV GS+Q D +++E++RGI+
Sbjct: 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGIS 69
Query: 250 V 250
+
Sbjct: 70 I 70
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 12/112 (10%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGIT 76
+ + + RN I+AH+D GK+T +R+L TG + G+SQ +D ++ EQ+RGIT
Sbjct: 4 EFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGIT 62
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ + + + E + +N+IDTPGHVD + EV RSL G V ++DA
Sbjct: 63 ITSAATTAAW------EGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDA 108
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERG 247
+ + + RN I+AH+D GK+T +R+L TG + G+SQ +D ++ EQ+RG
Sbjct: 4 EFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRG 60
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 14/106 (13%)
Query: 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVL--------DSLQVEQERGITVKAQTA 82
F+II+H D GK+TL ++LL G + +GS + D + +E+ERGI+V
Sbjct: 34 FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVM 93
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
Y + ++NL+DTPGH DFS + R L A +++IDA
Sbjct: 94 QFPY------RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDA 133
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 204 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVL--------DSLQVEQERGITV 250
F+II+H D GK+TL ++LL G + +GS + D + +E+ERGI+V
Sbjct: 34 FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISV 88
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 40/136 (29%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASL 84
+ R+RN I AH+D GK+T +R+L TG + A T
Sbjct: 4 LKRLRNIGIAAHIDAGKTTTTERILYYTGRI-----------------------AVTTCF 40
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQ 144
+++ +N+IDTPGHVDF+ EV RS+ G +++ D++Q E Q
Sbjct: 41 W-------KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---------GVEPQ 84
Query: 145 LQTLF-NIDKKSVLRI 159
+T++ +K V RI
Sbjct: 85 SETVWRQAEKYKVPRI 100
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTV 228
+ R+RN I AH+D GK+T +R+L TG +
Sbjct: 4 LKRLRNIGIAAHIDAGKTTTTERILYYTGRI 34
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGSSQ---VLDSLQVEQE 72
N +I HVDHGKSTL RLL G + L S + +LD L+ E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
RG+T+ +R+ + ++Y +ID PGH DF + + +L++ A +
Sbjct: 68 RGVTI--NLTFMRFET----KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK 119
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGSSQ---VLDSLQVEQE 245
N +I HVDHGKSTL RLL G + L S + +LD L+ E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 246 RGITV 250
RG+T+
Sbjct: 68 RGVTI 72
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 23/118 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVL------------SSGS-----SQVLDSLQVEQE 72
N +I HVDHGKSTL LL G + S G + +LD ++ E+E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
RGIT+ L + + ++Y+ +ID PGH DF + + +L++ A +
Sbjct: 68 RGITI-----DLTFMK-FETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARK 119
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVL------------SSGS-----SQVLDSLQVEQE 245
N +I HVDHGKSTL LL G + S G + +LD ++ E+E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 246 RGITV 250
RGIT+
Sbjct: 68 RGITI 72
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 23/118 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVL------------SSGS-----SQVLDSLQVEQE 72
N +I HVDHGKSTL LL G + S G + +LD ++ E+E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
RGIT+ L + + ++Y+ +ID PGH DF + + +L++ A +
Sbjct: 71 RGITI-----DLTFMK-FETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARK 122
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVL------------SSGS-----SQVLDSLQVEQE 245
N +I HVDHGKSTL LL G + S G + +LD ++ E+E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 246 RGITV 250
RGIT+
Sbjct: 71 RGITI 75
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI 89
N I H+DHGK+TL+ L E+ S+ D L Q+RGIT+ ++ +
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIA-------STSAHDKLPESQKRGITIDIGFSAFKL--- 70
Query: 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
E Y + L+D PGH D V + ++++DA +
Sbjct: 71 ---ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE 108
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV 250
N I H+DHGK+TL+ L E+ S+ D L Q+RGIT+
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIA-------STSAHDKLPESQKRGITI 61
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 23/114 (20%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
N +I HVD GKST L+ G + L GS + VLD L+ E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLI 126
RGIT+ A ++ + +Y + +ID PGH DF + + +L+I
Sbjct: 69 RGITI--DIALWKFET----PKYQVTVIDAPGHRDFIKNMITGTSQADCAILII 116
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
N +I HVD GKST L+ G + L GS + VLD L+ E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 246 RGITV 250
RGIT+
Sbjct: 69 RGITI 73
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS------QVLDSLQVEQERGITVKAQTAS 83
N I HVDHGK+TL + + +L+ G + +D+ E+ RGIT+ A A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITK----ILAEGGGAKFKKYEEIDNAPEERARGITINA--AH 58
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ Y++ + D PGH D+ + A G +L++ AN
Sbjct: 59 VEYSTAARHYAH----TDCPGHADYVKNMITGTAPLDGCILVVAAN 100
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS------QVLDSLQVEQERGITVKA 252
N I HVDHGK+TL + + +L+ G + +D+ E+ RGIT+ A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITK----ILAEGGGAKFKKYEEIDNAPEERARGITINA 56
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS------QVLDSLQVEQERGITVKAQTAS 83
N I HVDHGK+TL + + +L+ G + +D+ E+ RGIT+ A A
Sbjct: 16 NVGTIGHVDHGKTTLTAAITK----ILAEGGGAKFKKYEEIDNAPEERARGITINA--AH 69
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ Y++ + D PGH D+ A G +L++ AN
Sbjct: 70 VEYSTAARHYAH----TDCPGHADYVKNXITGTAPLDGCILVVAAN 111
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS------QVLDSLQVEQERGITVKA 252
N I HVDHGK+TL + + +L+ G + +D+ E+ RGIT+ A
Sbjct: 16 NVGTIGHVDHGKTTLTAAITK----ILAEGGGAKFKKYEEIDNAPEERARGITINA 67
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASL 84
I R +I+ HVDHGK+TL D+L + + +G GIT Q
Sbjct: 1 IPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG--------------GIT---QHIGA 43
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
S+ GE+ + +DTPGH FS R V+L++ A+
Sbjct: 44 FLVSLPSGEK--ITFLDTPGHAAFSAMRARGTQVTDIVILVVAAD 86
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS 233
I R +I+ HVDHGK+TL D+L + + +G
Sbjct: 1 IPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGG 36
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+ T+
Sbjct: 298 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 351
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y D +D PGH D+ + A G +L++ A
Sbjct: 352 VEY----DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA 392
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITV 250
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+
Sbjct: 298 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI 347
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+ T+
Sbjct: 298 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 351
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y D +D PGH D+ + A G +L++ A
Sbjct: 352 VEY----DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA 392
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITV 250
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+
Sbjct: 298 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI 347
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+ T+
Sbjct: 13 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 66
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ Y D +D PGH D+ + A G +L++ A
Sbjct: 67 VEY----DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITV 250
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI 62
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+ T+
Sbjct: 13 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 66
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ Y D +D PGH D+ + A G +L++ A
Sbjct: 67 VEY----DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITV 250
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI 62
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+ T+
Sbjct: 13 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 66
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ Y D +D PGH D+ + A G +L++ A
Sbjct: 67 VEY----DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITV 250
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI 62
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+ T+
Sbjct: 14 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 67
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ Y D +D PGH D+ + A G +L++ A
Sbjct: 68 VEY----DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITV 250
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+
Sbjct: 14 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI 63
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+ T+
Sbjct: 14 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 67
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ Y D +D PGH D+ + A G +L++ A
Sbjct: 68 VEY----DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITV 250
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+
Sbjct: 14 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI 63
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV------------LSSGS-----SQVLDSLQVEQE 72
N I HVD GKSTL +L +TG V +G S LDS E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132
+G TV+ A + E +L+D PGH + + + VL+I A + +
Sbjct: 105 KGKTVEVGRA------YFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE 158
Query: 133 LK 134
+
Sbjct: 159 FE 160
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 17/70 (24%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV------------LSSGS-----SQVLDSLQVEQE 245
N I HVD GKSTL +L +TG V +G S LDS E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 246 RGITVKAQTA 255
+G TV+ A
Sbjct: 105 KGKTVEVGRA 114
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+ T+
Sbjct: 5 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 58
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ Y D +D PGH D+ + A G +L++ A
Sbjct: 59 VEY----DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 100
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQ---VEQERGITV 250
N I HVDHGK+TL + TVL+ G+++ D + E+ RGIT+
Sbjct: 5 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI 54
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITVKAQTASL 84
N I HVDHGK+TL L +T + + +V +D E+ RGIT+ TA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAA--ENPNVEVKDYGDIDKAPEERARGITI--NTAHV 68
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
Y + + + +D PGH D+ + A G +L++ A
Sbjct: 69 EYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITV 250
N I HVDHGK+TL L +T + + +V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAA--ENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITVKAQTASL 84
N I HVDHGK+TL L +T + + +V +D E+ RGIT+ TA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAA--ENPNVEVKDYGDIDKAPEERARGITI--NTAHV 68
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
Y + + + +D PGH D+ + A G +L++ A
Sbjct: 69 EYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITV 250
N I HVDHGK+TL L +T + + +V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAA--ENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITVKAQTASL 84
N I HVDHGK+TL L +T + + +V +D E+ RGIT+ TA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAA--ENPNVEVKDYGDIDKAPEERARGITI--NTAHV 68
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
Y + + + +D PGH D+ + A G +L++ A
Sbjct: 69 EYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITV 250
N I HVDHGK+TL L +T + + +V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAA--ENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITVKAQTASL 84
N I HVDHGK+TL L +T + + +V +D E+ RGIT+ TA +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAA--ENPNVEVKDYGDIDKAPEERARGITI--NTAHV 68
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
Y + + + +D PGH D+ + A G +L++ A
Sbjct: 69 EYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITV 250
N I HVDHGK+TL L +T + + +V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAA--ENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 31 FSIIAHVDHGKSTLADRLLEMTGTVL------------SSGSSQ-------VLDSLQVEQ 71
F +VD GKSTL RLL + + SG++ ++D LQ E+
Sbjct: 27 FLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAER 86
Query: 72 ERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
E+GIT+ + RY S + + DTPGH ++ + C ++L+DA
Sbjct: 87 EQGITIDV---AYRYFST---AKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDA 137
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 19/66 (28%)
Query: 204 FSIIAHVDHGKSTLADRLLEMTGTVL------------SSGSSQ-------VLDSLQVEQ 244
F +VD GKSTL RLL + + SG++ ++D LQ E+
Sbjct: 27 FLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAER 86
Query: 245 ERGITV 250
E+GIT+
Sbjct: 87 EQGITI 92
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 31 FSIIAHVDHGKSTLADRLLEMTGTVLSS------------GSS-----QVLDSLQVEQER 73
F ++ HVD GKSTL RLL V S G S ++D E+ER
Sbjct: 170 FVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER 229
Query: 74 GITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
G+TV TS ++D PGH DF ++ +L +D
Sbjct: 230 GVTVSI------CTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVD 277
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 17/64 (26%)
Query: 204 FSIIAHVDHGKSTLADRLLEMTGTVLSS------------GSS-----QVLDSLQVEQER 246
F ++ HVD GKSTL RLL V S G S ++D E+ER
Sbjct: 170 FVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER 229
Query: 247 GITV 250
G+TV
Sbjct: 230 GVTV 233
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GSSQ-----VLDSLQVEQE 72
+F ++ HVD GKSTL RLL V S G S ++D E+E
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 94
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
RG+TV TS ++D PGH DF ++ +L +D
Sbjct: 95 RGVTVSI------CTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVD 143
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GSSQ-----VLDSLQVEQE 245
+F ++ HVD GKSTL RLL V S G S ++D E+E
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 94
Query: 246 RGITV 250
RG+TV
Sbjct: 95 RGVTV 99
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 12 KPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV---------------- 55
KP S P P N I HVD GKST+ +++ +TG V
Sbjct: 2 KPKSVVAP-PGAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKN 60
Query: 56 -LSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTR 114
+ S LD+ Q E+++G TV+ A + E+ ++D PGH F +
Sbjct: 61 RETWYLSWALDTNQEERDKGKTVEVGRA------YFETEKKHFTILDAPGHKSFVPNMIG 114
Query: 115 SLAACQGVVLLIDANQVDLKNA 136
+ VL+I A + + +
Sbjct: 115 GASQADLAVLVISARKGEFETG 136
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 185 KPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV 228
KP S P P N I HVD GKST+ +++ +TG V
Sbjct: 2 KPKSVVAP-PGAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMV 44
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 23/115 (20%)
Query: 33 IIAHVDHGKSTLADRLLEMTGTVLS--------------SGS---SQVLDSLQVEQERGI 75
+ HVD GKST+ R++ G + S GS + +LD+ + E+ RG+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 76 TVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
T+ + + + ++ + + D PGH DF + + ++ VL++D++Q
Sbjct: 242 TMDVASTTF------ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLR 85
A IR +++ H GK+TL + LL TG G +VE+ T A L
Sbjct: 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRG--------RVEEGTTTTDYTPEAKLH 58
Query: 86 YTSILDGEEYLL------NLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
T++ G LL L+D PG+ DF E+ +L A ++ + A
Sbjct: 59 RTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAE 108
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGT 227
A IR +++ H GK+TL + LL TG
Sbjct: 7 AMIRTVALVGHAGSGKTTLTEALLYKTGA 35
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 23/115 (20%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GSSQ-----VLDSLQVEQE 72
+F ++ HVD GKSTL RLL V S G S + D E+E
Sbjct: 35 SFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERE 94
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
RG+TV TS ++D PGH DF ++ +L +D
Sbjct: 95 RGVTVSI------CTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVD 143
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GSSQ-----VLDSLQVEQE 245
+F ++ HVD GKSTL RLL V S G S + D E+E
Sbjct: 35 SFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERE 94
Query: 246 RGITV 250
RG+TV
Sbjct: 95 RGVTV 99
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITVKAQTA 82
N I HVDHGK+TL L V ++ + V +D E+ RGIT+ TA
Sbjct: 14 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI--NTA 67
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + + + +D PGH D+ + A G +L++ A
Sbjct: 68 HVEYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 109
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITV 250
N I HVDHGK+TL L V ++ + V +D E+ RGIT+
Sbjct: 14 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI 64
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITVKAQTA 82
N I HVDHGK+TL L V ++ + V +D E+ RGIT+ TA
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI--NTA 66
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + + + +D PGH D+ + A G +L++ A
Sbjct: 67 HVEYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITV 250
N I HVDHGK+TL L V ++ + V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITVKAQTA 82
N I HVDHGK+TL L V ++ + V +D E+ RGIT+ TA
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI--NTA 66
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + + + +D PGH D+ + A G +L++ A
Sbjct: 67 HVEYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITV 250
N I HVDHGK+TL L V ++ + V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITVKAQTA 82
N I HVDHGK+TL L V ++ + V +D E+ RGIT+ TA
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI--NTA 66
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + + + +D PGH D+ + A G +L++ A
Sbjct: 67 HVEYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITV 250
N I HVDHGK+TL L V ++ + V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITVKAQTA 82
N I HVDHGK+TL L V ++ + V +D E+ RGIT+ TA
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI--NTA 66
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + + + +D PGH D+ + A G +L++ A
Sbjct: 67 HVEYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITV 250
N I HVDHGK+TL L V ++ + V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITVKAQTA 82
N I HVDHGK+TL L V ++ + V +D E+ RGIT+ TA
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI--NTA 66
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + + + +D PGH D+ + A G +L++ A
Sbjct: 67 HVEYET----AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 108
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQERGITV 250
N I HVDHGK+TL L V ++ + V +D E+ RGIT+
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI 63
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 32 SIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQE--RGITVK-AQTASL 84
S++ HVDHGK+TL D + G+ ++S G +Q + + ++ + GI + S+
Sbjct: 9 SVLGHVDHGKTTLLDHI---RGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSI 65
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQ 144
R T L G L IDTPGH F+ R A +L++D N E + Q
Sbjct: 66 RET--LPG----LFFIDTPGHEAFTTLRKRGGALADLAILIVDIN---------EGFKPQ 110
Query: 145 LQTLFNIDKKSVLRIWHRRCFSCA 168
Q NI LR++ R F A
Sbjct: 111 TQEALNI-----LRMY-RTPFVVA 128
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 205 SIIAHVDHGKSTLADRL 221
S++ HVDHGK+TL D +
Sbjct: 9 SVLGHVDHGKTTLLDHI 25
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 25/127 (19%)
Query: 32 SIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQE--RGITVK-AQTASL 84
S++ HVDHGK+TL D + G+ ++S G +Q + + ++ + GI + S+
Sbjct: 9 SVLGHVDHGKTTLLDHI---RGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKKFSI 65
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQ 144
R T L G L IDTPGH F+ R A +L++D N E + Q
Sbjct: 66 RET--LPG----LFFIDTPGHEAFTTLRKRGGALADLAILIVDIN---------EGFKPQ 110
Query: 145 LQTLFNI 151
Q NI
Sbjct: 111 TQEALNI 117
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 205 SIIAHVDHGKSTLADRL 221
S++ HVDHGK+TL D +
Sbjct: 9 SVLGHVDHGKTTLLDHI 25
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 127 DANQVDLKNANPEACEEQLQTLFNIDKK-SVLRIWHRRCFSCADCHRSLDSTNLND 181
+A+++ K + C Q ++ +K + WH+ CF CA C +SL+ST L D
Sbjct: 104 NASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of MlpCRP3
Length = 58
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 160 WHRRCFSCADCHRSLDSTNLND 181
WH+ CF CA C +SL+STN+ D
Sbjct: 22 WHKTCFRCAICGKSLESTNVTD 43
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 22/99 (22%)
Query: 32 SIIAHVDHGKSTLADRLLEM-TGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL 90
+I+ HVDHGK++L + + + + G +Q + + VE E G
Sbjct: 8 TIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG---------------- 51
Query: 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
++ +DTPGH F++ R A VVL++ A+
Sbjct: 52 -----MITFLDTPGHAAFTSMRARGAQATDIVVLVVAAD 85
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 160 WHRRCFSCADCHRSLDSTNLND 181
WH+ CF CA C +SL+ST L D
Sbjct: 31 WHKSCFRCAKCGKSLESTTLAD 52
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 158 RIWHRRCFSCADCHRSLDSTNLND 181
+ WH+ CF CA C +SL+ST L +
Sbjct: 57 KPWHKNCFRCAKCGKSLESTTLTE 80
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI 89
N I HVDHGK+T L++ + VL RGIT+ T+ + Y
Sbjct: 13 NVGTIGHVDHGKTT------------LTAAITTVLAKTYGGAARGITI--NTSHVEY--- 55
Query: 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
D +D PGH D+ + A G +L++ A
Sbjct: 56 -DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 94
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 158 RIWHRRCFSCADCHRSLDSTNLND 181
+ WH+ CF CA C +SL+ST L +
Sbjct: 57 KPWHKNCFRCAKCGKSLESTTLTE 80
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQER 73
E I R N I HVDHGK+TL L V ++ + V +D + E+ R
Sbjct: 4 EFIRTKRHVNVGTIGHVDHGKTTLTAALT----YVAAAENRNVEVKDYGDIDKAREERAR 59
Query: 74 GITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
GIT+ TA + Y + + + +D GH D+ + A G +L++ A
Sbjct: 60 GITI--NTAHVEYET----AKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSA 108
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 194 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------LDSLQVEQER 246
E I R N I HVDHGK+TL L V ++ + V +D + E+ R
Sbjct: 4 EFIRTKRHVNVGTIGHVDHGKTTLTAALT----YVAAAENRNVEVKDYGDIDKAREERAR 59
Query: 247 GITV 250
GIT+
Sbjct: 60 GITI 63
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 32/145 (22%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASL----- 84
N ++ HVDHGK+TL L TG + S ++ RGIT+K A
Sbjct: 13 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSEEL--------RRGITIKIGFADAEIRRC 61
Query: 85 ----RYTS------ILDGEEYL--LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132
RY++ E++ ++ ID+PGH + + G +L+I AN+
Sbjct: 62 SNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANE-- 119
Query: 133 LKNANPEACEEQLQTLFNIDKKSVL 157
P+ E L L I +K+++
Sbjct: 120 -PCPRPQT-REHLMALQIIGQKNII 142
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N ++ HVDHGK+TL L TG + S ++ RGIT+K
Sbjct: 13 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSEEL--------RRGITIK 50
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGI--TVKAQTASLRYT 87
N ++ HVDHGK+TL + TG S S + + E G+ + K A +
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEP 66
Query: 88 SIL-----DGEEYL--LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
S D ++L ++ ID PGH + A G +L++ AN+
Sbjct: 67 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 116
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGI 248
N ++ HVDHGK+TL + TG S S + + E G+
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKHSEETIKLGYAETNIGV 52
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV-------LSSGSSQVLDSLQVEQERGITVKAQTA 82
N ++ HVDHGK++L L TG L G S L E + T
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTT 66
Query: 83 SLRYTSILDGEEYL--LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
R + L E+L ++ +D+PGH + + G +L+I AN+
Sbjct: 67 KPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE 116
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 33/123 (26%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK---AQTASLRY 86
N ++ HVDHGK+TL + TG S S E +RG+T+K A+T
Sbjct: 11 NIGVVGHVDHGKTTLVQAI---TGIWTSKHSE--------ELKRGMTIKLGYAETNIGVC 59
Query: 87 TSILDGEEYL-------------------LNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
S E Y+ ++ ID PGH + A G +L++
Sbjct: 60 ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVA 119
Query: 128 ANQ 130
AN+
Sbjct: 120 ANE 122
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N ++ HVDHGK+TL + TG S S E +RG+T+K
Sbjct: 11 NIGVVGHVDHGKTTLVQAI---TGIWTSKHSE--------ELKRGMTIK 48
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 33/123 (26%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK---AQTASLRY 86
N ++ HVDHGK+TL + TG S S E +RG+T+K A+T
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKHSE--------ELKRGMTIKLGYAETNIGVC 58
Query: 87 TSILDGEEYL-------------------LNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
S E Y+ ++ ID PGH + A G +L++
Sbjct: 59 ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVA 118
Query: 128 ANQ 130
AN+
Sbjct: 119 ANE 121
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N ++ HVDHGK+TL + TG S S E +RG+T+K
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKHSE--------ELKRGMTIK 47
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 32/145 (22%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI 89
N ++ HVDHGK+TL L TG + S E RGIT+K A
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSE--------ELRRGITIKIGFADAEIRRC 60
Query: 90 LDGEEY-----------------LLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132
+ Y ++ ID PGH + + G +L+I AN+
Sbjct: 61 PNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE-- 118
Query: 133 LKNANPEACEEQLQTLFNIDKKSVL 157
P+ E L L I +K+++
Sbjct: 119 -PCPRPQT-REHLMALQIIGQKNII 141
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N ++ HVDHGK+TL L TG + S E RGIT+K
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSE--------ELRRGITIK 49
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 32/145 (22%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI 89
N ++ HVDHGK+TL L TG + S E RGIT+K A
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSE--------ELRRGITIKIGFADAEIRRC 60
Query: 90 LDGEEY-----------------LLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132
+ Y ++ ID PGH + + G +L+I AN+
Sbjct: 61 PNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE-- 118
Query: 133 LKNANPEACEEQLQTLFNIDKKSVL 157
P+ E L L I +K+++
Sbjct: 119 -PCPRPQT-REHLMALQIIGQKNII 141
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N ++ HVDHGK+TL L TG + S E RGIT+K
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSE--------ELRRGITIK 49
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 28/118 (23%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI 89
N + HVDHGK+TL L TG + S ++ RGIT+K A
Sbjct: 12 NIGXVGHVDHGKTTLTKAL---TGVWTDTHSEEL--------RRGITIKIGFADAEIRRC 60
Query: 90 LDGEEY-----------------LLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ Y ++ ID PGH + G +L+I AN+
Sbjct: 61 PNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANE 118
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N + HVDHGK+TL L TG + S ++ RGIT+K
Sbjct: 12 NIGXVGHVDHGKTTLTKAL---TGVWTDTHSEEL--------RRGITIK 49
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQV-EQERGITVKAQTASLRYTS 88
N ++ HVDHGK+TL + TG S ++ V E + S +
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCG 66
Query: 89 ILDGEEYL--LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
D ++L ++ ID PGH + A G +L++ AN+
Sbjct: 67 SDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 110
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 203 NFSIIAHVDHGKSTLA 218
N ++ HVDHGK+TL
Sbjct: 10 NIGVVGHVDHGKTTLV 25
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASL 84
+ R +I+ HVDHGK+TL D + S EQE G + +
Sbjct: 5 VERPPVVTIMGHVDHGKTTLLD---------------AIRHSKVTEQEAG-GITQHIGAY 48
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ T + + +DTPGH F+ R V+L++ A+
Sbjct: 49 QVTV----NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAAD 89
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRL 221
+ R +I+ HVDHGK+TL D +
Sbjct: 5 VERPPVVTIMGHVDHGKTTLLDAI 28
>pdb|2YWW|A Chain A, Crystal Structure Of Aspartate Carbamoyltransferase
Regulatory Chain From Methanocaldococcus Jannaschii
pdb|2YWW|B Chain B, Crystal Structure Of Aspartate Carbamoyltransferase
Regulatory Chain From Methanocaldococcus Jannaschii
Length = 149
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 30/158 (18%)
Query: 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLE-------MTGTVLSSGSSQVLDSLQVEQ 71
P E++ + +I N ++I H+D GK+ + ++L M + S D L++E
Sbjct: 3 PMEELKVKKITNGTVIDHIDAGKALMVFKVLNVPKETSVMIAINVPSKKKGKKDILKIE- 61
Query: 72 ERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQV 131
GI +K + D ++ L D ++ + +V L + D +
Sbjct: 62 --GIELKKE----------DVDKISLISPDVTINIIRNGKVVEKLKP-----QIPDEIEG 104
Query: 132 DLKNANPEAC--EEQLQTLFNIDKKSVLRIWHRRCFSC 167
LK NP +E+++ F I+ K+ L+I RC+ C
Sbjct: 105 TLKCTNPNCITNKEKVRGKFKIESKNPLKI---RCYYC 139
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 192 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLE-------MTGTVLSSGSSQVLDSLQVEQ 244
P E++ + +I N ++I H+D GK+ + ++L M + S D L++E
Sbjct: 3 PMEELKVKKITNGTVIDHIDAGKALMVFKVLNVPKETSVMIAINVPSKKKGKKDILKIE- 61
Query: 245 ERGITVKAQ 253
GI +K +
Sbjct: 62 --GIELKKE 68
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 31.6 bits (70), Expect = 0.47, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 136 ANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175
A E C Q + + +++ + +H CF+C CHR LD
Sbjct: 13 ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLD 52
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of MlpCRP3
Length = 60
Score = 30.8 bits (68), Expect = 0.77, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 158 RIWHRRCFSCADCHRSLDSTNL 179
R +H+ CF C C ++LDST +
Sbjct: 22 RSFHKTCFHCMACRKALDSTTV 43
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
S R ++DGE LL+++DT GH ++S + + +G + + N
Sbjct: 57 SYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAIN 103
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
S R ++DGE LL+++DT GH ++S + + +G + + N
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAIN 85
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 140 ACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG 182
C++ + F + K++ R WH +C C+DCH L + G
Sbjct: 65 GCDQHILDRFIL--KALDRHWHSKCLKCSDCHVPLAERCFSRG 105
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDG 182
K++ R WH +C C+DCH L + G
Sbjct: 23 KALDRHWHSKCLKCSDCHVPLAERCFSRG 51
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And Glycine-
Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 158 RIWHRRCFSCADCHRSLDSTNL 179
R +HR CF C C ++LDST +
Sbjct: 28 RSFHRCCFLCMVCRKNLDSTTV 49
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5
pdb|4F7O|B Chain B, Crystal Structure Of Csn5
Length = 257
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 182 GLAKPDSKATPYEDIPIARIRNFSI------IAHVDHGKSTLADRLLEM 224
G PD + Y+ IP+ +I +F + V + KS+L +LLE+
Sbjct: 192 GYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLEL 240
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACE 142
S R +LDGEE ++++DT G D++ + +G +L+ + + A E E
Sbjct: 43 SYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFRE 102
Query: 143 EQLQTLFNIDKKSVLRIWHR 162
+ L+ DK +L + ++
Sbjct: 103 QILRVKAEEDKIPLLVVGNK 122
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACE 142
S R +LDGEE ++++DT G D++ + +G +L+ + + A E E
Sbjct: 39 SYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFRE 98
Query: 143 EQLQTLFNIDKKSVLRIWHR 162
+ L+ DK +L + ++
Sbjct: 99 QILRVKAEEDKIPLLVVGNK 118
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
T I+DGE +L L DT G F + GV+LL D
Sbjct: 69 TLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYD 109
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 158 RIWHRRCFSCADCHRSLDSTNLNDGLAKPD----SKATPYEDIPIARIRNFSIIAHVDHG 213
R WH CF CA C L + +AK + +K T ED P + +I+A
Sbjct: 27 RFWHDTCFRCAKCLHPLANETF---VAKDNKILCNKCTTREDSPKCKGCFKAIVA----- 78
Query: 214 KSTLADRLLEMTGTVL 229
D+ +E GTV
Sbjct: 79 ----GDQNVEYKGTVW 90
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 159 IWHRRCFSCADCHRSLDSTNLNDGLAKP 186
+WH CF C DC S + + + +P
Sbjct: 36 VWHPECFVCGDCFTSFSTGSFFELDGRP 63
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFS 109
S R +LDGEE ++++DT G D++
Sbjct: 50 SYRKKVVLDGEEVQIDILDTAGQEDYA 76
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFS 109
S R +LDGEE ++++DT G D++
Sbjct: 54 SYRKKVVLDGEEVQIDILDTAGQEDYA 80
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFS 109
S R +LDGEE ++++DT G D++
Sbjct: 42 SYRKKVVLDGEEVQIDILDTAGQEDYA 68
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 150 NIDKKSVLRIWHRRCFSCADCHR 172
N++ K +WH+ CF+C++C +
Sbjct: 31 NVEYKGT--VWHKDCFTCSNCKQ 51
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFS 109
S R +LDGEE ++++DT G D++
Sbjct: 40 SYRKKVVLDGEEVQIDILDTAGQEDYA 66
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 40 GKSTLADRLL--EMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97
GKSTL + L ++ S ++ ++QVEQ + + + G + LL
Sbjct: 15 GKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG------------GVQLLL 62
Query: 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQL 145
++DTPG F + V S Q V+ ID+ D NA Q+
Sbjct: 63 TIVDTPG---FGDAVDNS-NCWQPVIDYIDSKFEDYLNAESRVNRRQM 106
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 40 GKSTLADRLL--EMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97
GKSTL + L ++ S ++ ++QVEQ + + + G + LL
Sbjct: 20 GKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG------------GVQLLL 67
Query: 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQL 145
++DTPG F + V S Q V+ ID+ D NA Q+
Sbjct: 68 TIVDTPG---FGDAVDNS-NCWQPVIDYIDSKFEDYLNAESRVNRRQM 111
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 122 VVLLIDANQVDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSC 167
VV +I + + LKN+NP+ E +TL K S LR R SC
Sbjct: 41 VVHIIQSREPSLKNSNPDEIEIDFETL----KPSTLRELERYVTSC 82
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA 82
+P ++ R +I+ + GKS+L + +E Q +DS E T K T
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVE----------GQFVDSYDPTIENTFT-KLIT- 48
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFS 109
++G+EY L L+DT G ++S
Sbjct: 49 -------VNGQEYHLQLVDTAGQDEYS 68
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA 82
+P ++ R +I+ + GKS+L + +E Q +DS E T K T
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVE----------GQFVDSYDPTIENTFT-KLIT- 48
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFS 109
++G+EY L L+DT G ++S
Sbjct: 49 -------VNGQEYHLQLVDTAGQDEYS 68
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 40 GKSTLADRLL--EMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97
GKSTL + L ++ S ++ ++QVEQ + + + G + LL
Sbjct: 43 GKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG------------GVQLLL 90
Query: 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQL 145
++DTPG F + V S Q V+ ID+ D NA Q+
Sbjct: 91 TIVDTPG---FGDAVDNS-NCWQPVIDYIDSKFEDYLNAESRVNRRQM 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,880,297
Number of Sequences: 62578
Number of extensions: 254381
Number of successful extensions: 1157
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 195
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)