Query psy12244
Match_columns 257
No_of_seqs 271 out of 2054
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 22:27:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 4.9E-30 1.1E-34 217.5 13.9 193 26-227 5-270 (428)
2 KOG0462|consensus 100.0 9.3E-30 2E-34 221.1 11.3 197 19-223 51-279 (650)
3 COG0481 LepA Membrane GTPase L 99.9 1.4E-27 3.1E-32 204.6 9.6 195 21-221 2-228 (603)
4 COG2895 CysN GTPases - Sulfate 99.9 7.5E-27 1.6E-31 193.8 9.8 150 26-184 4-205 (431)
5 PRK12317 elongation factor 1-a 99.9 2.5E-26 5.4E-31 204.7 13.5 192 26-226 4-263 (425)
6 COG1160 Predicted GTPases [Gen 99.9 1.1E-26 2.4E-31 200.1 9.1 189 29-247 4-224 (444)
7 PLN00043 elongation factor 1-a 99.9 5.4E-26 1.2E-30 202.3 12.8 191 26-225 5-270 (447)
8 PTZ00141 elongation factor 1- 99.9 8.6E-26 1.9E-30 201.1 13.2 192 26-226 5-271 (446)
9 TIGR02034 CysN sulfate adenyly 99.9 1.1E-25 2.5E-30 198.7 13.2 189 29-226 1-255 (406)
10 KOG0458|consensus 99.9 9E-26 2E-30 198.0 12.1 198 23-226 172-443 (603)
11 PRK05124 cysN sulfate adenylyl 99.9 1.3E-25 2.7E-30 201.4 12.8 192 26-226 25-283 (474)
12 PRK05433 GTP-binding protein L 99.9 2.7E-25 5.9E-30 204.0 13.8 194 24-223 3-228 (600)
13 TIGR01393 lepA GTP-binding pro 99.9 5.8E-25 1.3E-29 201.7 13.9 192 27-224 2-225 (595)
14 TIGR00483 EF-1_alpha translati 99.9 4.7E-25 1E-29 196.4 12.4 192 26-226 5-265 (426)
15 PF00009 GTP_EFTU: Elongation 99.9 4.5E-25 9.7E-30 175.8 8.3 143 27-175 2-183 (188)
16 TIGR01394 TypA_BipA GTP-bindin 99.9 4.1E-24 9E-29 195.6 13.3 186 28-224 1-236 (594)
17 PRK05506 bifunctional sulfate 99.9 4.6E-24 1E-28 198.3 13.6 194 24-226 20-279 (632)
18 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.5E-23 3.3E-28 169.5 13.5 144 30-182 1-194 (208)
19 cd01890 LepA LepA subfamily. 99.9 3.2E-23 6.9E-28 163.5 14.4 147 29-176 1-174 (179)
20 PLN03126 Elongation factor Tu; 99.9 2.2E-23 4.8E-28 186.3 13.1 194 26-225 79-326 (478)
21 PRK12736 elongation factor Tu; 99.9 1.9E-23 4E-28 184.1 11.4 189 26-225 10-247 (394)
22 CHL00071 tufA elongation facto 99.9 2.7E-23 5.8E-28 183.9 12.4 192 26-223 10-255 (409)
23 TIGR00485 EF-Tu translation el 99.9 2.8E-23 6.1E-28 183.1 12.3 194 26-225 10-247 (394)
24 PRK12735 elongation factor Tu; 99.9 3.5E-23 7.5E-28 182.5 12.3 189 26-225 10-249 (396)
25 PRK10218 GTP-binding protein; 99.9 7.2E-23 1.6E-27 187.4 13.6 187 26-223 3-239 (607)
26 PTZ00327 eukaryotic translatio 99.9 1.4E-23 3.1E-28 186.4 8.7 186 25-226 31-288 (460)
27 cd01883 EF1_alpha Eukaryotic e 99.9 6.8E-23 1.5E-27 167.0 11.4 144 30-182 1-205 (219)
28 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.8E-22 4E-27 161.2 13.6 136 28-169 2-173 (195)
29 PRK00049 elongation factor Tu; 99.9 8.8E-23 1.9E-27 179.8 12.1 188 26-224 10-248 (396)
30 PLN03127 Elongation factor Tu; 99.9 1E-22 2.2E-27 181.3 12.2 190 24-224 57-297 (447)
31 TIGR03680 eif2g_arch translati 99.9 5E-23 1.1E-27 182.1 8.7 184 27-226 3-251 (406)
32 PRK10512 selenocysteinyl-tRNA- 99.9 2.1E-22 4.6E-27 185.3 11.5 174 30-225 2-211 (614)
33 TIGR00475 selB selenocysteine- 99.9 1.6E-22 3.5E-27 185.5 9.5 176 30-226 2-214 (581)
34 COG1217 TypA Predicted membran 99.9 6.6E-22 1.4E-26 169.6 12.3 184 26-220 3-236 (603)
35 PRK04000 translation initiatio 99.9 2.7E-22 5.9E-27 177.3 9.2 185 26-226 7-256 (411)
36 cd01886 EF-G Elongation factor 99.9 2.2E-21 4.8E-26 162.3 13.3 136 30-171 1-168 (270)
37 COG0050 TufB GTPases - transla 99.9 1.8E-21 3.9E-26 158.3 10.3 184 26-220 10-242 (394)
38 cd01891 TypA_BipA TypA (tyrosi 99.9 1.1E-20 2.3E-25 151.3 14.6 141 28-174 2-177 (194)
39 COG5257 GCD11 Translation init 99.8 1.2E-21 2.5E-26 161.2 6.9 189 26-230 8-261 (415)
40 PRK00007 elongation factor G; 99.8 2.1E-20 4.6E-25 175.2 15.4 144 22-171 4-179 (693)
41 cd01889 SelB_euk SelB subfamil 99.8 9E-21 2E-25 151.5 11.0 140 30-176 2-183 (192)
42 PRK03003 GTP-binding protein D 99.8 1.2E-20 2.6E-25 170.1 12.8 181 26-240 36-250 (472)
43 TIGR00484 EF-G translation elo 99.8 3.4E-20 7.4E-25 174.0 15.5 138 21-164 3-171 (689)
44 cd04169 RF3 RF3 subfamily. Pe 99.8 4.9E-20 1.1E-24 154.0 14.8 140 28-175 2-176 (267)
45 COG0532 InfB Translation initi 99.8 1.9E-21 4.1E-26 170.5 6.2 175 26-229 3-209 (509)
46 cd04171 SelB SelB subfamily. 99.8 1.4E-20 3E-25 145.9 9.9 130 30-175 2-162 (164)
47 PRK00093 GTP-binding protein D 99.8 8.1E-21 1.8E-25 170.0 9.4 175 29-238 2-210 (435)
48 cd01888 eIF2_gamma eIF2-gamma 99.8 9.8E-21 2.1E-25 152.6 8.1 137 29-176 1-196 (203)
49 TIGR03594 GTPase_EngA ribosome 99.8 2.1E-20 4.5E-25 167.1 10.9 175 30-238 1-209 (429)
50 PRK05306 infB translation init 99.8 4.3E-20 9.3E-25 172.8 13.0 174 25-222 287-497 (787)
51 cd04168 TetM_like Tet(M)-like 99.8 1.5E-19 3.3E-24 148.7 14.0 120 30-155 1-150 (237)
52 TIGR00487 IF-2 translation ini 99.8 3.5E-20 7.6E-25 169.5 11.3 175 26-223 85-296 (587)
53 COG3276 SelB Selenocysteine-sp 99.8 4.8E-21 1E-25 164.2 5.2 173 30-224 2-207 (447)
54 CHL00189 infB translation init 99.8 5.8E-20 1.3E-24 170.6 12.5 180 26-222 242-455 (742)
55 PRK12739 elongation factor G; 99.8 1.7E-19 3.6E-24 169.3 14.9 137 23-165 3-170 (691)
56 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.3E-20 7.1E-25 151.3 8.6 149 30-178 1-222 (224)
57 PRK09518 bifunctional cytidyla 99.8 1.7E-19 3.7E-24 169.8 14.5 184 24-239 271-488 (712)
58 COG0480 FusA Translation elong 99.8 2.4E-19 5.3E-24 165.4 14.8 124 25-153 7-160 (697)
59 KOG1145|consensus 99.8 2.2E-20 4.7E-25 163.1 7.2 132 26-177 151-314 (683)
60 cd00881 GTP_translation_factor 99.8 4.6E-19 9.9E-24 140.6 13.2 141 30-176 1-184 (189)
61 PRK13351 elongation factor G; 99.8 1.5E-19 3.3E-24 169.9 10.8 121 23-149 3-153 (687)
62 KOG0459|consensus 99.8 2.5E-20 5.5E-25 157.3 4.6 198 22-227 73-344 (501)
63 cd01885 EF2 EF2 (for archaea a 99.8 1.1E-18 2.3E-23 141.8 13.7 102 29-130 1-108 (222)
64 cd04170 EF-G_bact Elongation f 99.8 1E-18 2.3E-23 146.7 14.0 143 30-179 1-173 (268)
65 COG1159 Era GTPase [General fu 99.8 2.1E-19 4.6E-24 147.6 9.0 128 27-175 5-168 (298)
66 KOG0460|consensus 99.8 2.5E-19 5.4E-24 148.5 7.7 185 26-218 52-284 (449)
67 TIGR00503 prfC peptide chain r 99.8 4.1E-18 8.9E-23 154.5 15.2 128 26-159 9-171 (527)
68 KOG0461|consensus 99.8 1.1E-18 2.5E-23 144.9 10.2 182 28-221 7-235 (522)
69 KOG0092|consensus 99.8 2.9E-19 6.3E-24 137.1 6.0 131 27-176 4-164 (200)
70 KOG0084|consensus 99.8 9.3E-19 2E-23 134.8 8.8 131 26-175 7-168 (205)
71 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.7E-18 3.7E-23 134.8 9.9 130 30-175 1-165 (167)
72 KOG0394|consensus 99.8 6.9E-19 1.5E-23 133.9 7.1 141 21-179 2-178 (210)
73 PRK00741 prfC peptide chain re 99.8 5.3E-18 1.1E-22 153.7 14.1 123 26-154 8-164 (526)
74 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.6E-18 5.5E-23 133.9 10.3 131 29-176 1-163 (168)
75 COG4108 PrfC Peptide chain rel 99.8 2.7E-18 5.9E-23 146.7 11.1 138 26-169 10-183 (528)
76 PF02421 FeoB_N: Ferrous iron 99.8 8.1E-19 1.8E-23 134.0 5.4 122 30-174 2-156 (156)
77 cd04154 Arl2 Arl2 subfamily. 99.8 5.4E-18 1.2E-22 133.1 10.2 124 26-175 12-171 (173)
78 cd01864 Rab19 Rab19 subfamily. 99.7 6.9E-18 1.5E-22 131.3 10.1 129 27-175 2-162 (165)
79 cd04167 Snu114p Snu114p subfam 99.7 1.9E-17 4.1E-22 134.4 12.5 101 29-130 1-106 (213)
80 cd04120 Rab12 Rab12 subfamily. 99.7 8.7E-18 1.9E-22 135.0 10.2 126 30-175 2-159 (202)
81 KOG0094|consensus 99.7 9.3E-18 2E-22 129.0 9.5 128 27-176 21-182 (221)
82 PRK15494 era GTPase Era; Provi 99.7 1.4E-17 3.1E-22 143.9 11.7 130 26-176 50-213 (339)
83 PLN00116 translation elongatio 99.7 1.6E-17 3.4E-22 158.7 12.9 106 25-130 16-133 (843)
84 TIGR00436 era GTP-binding prot 99.7 1.2E-17 2.6E-22 140.4 10.2 126 30-176 2-161 (270)
85 cd04149 Arf6 Arf6 subfamily. 99.7 2E-17 4.3E-22 129.4 10.6 123 27-175 8-166 (168)
86 PRK12740 elongation factor G; 99.7 8.1E-18 1.8E-22 157.9 9.4 91 34-130 1-95 (668)
87 cd01867 Rab8_Rab10_Rab13_like 99.7 1.2E-17 2.5E-22 130.4 8.8 127 28-175 3-161 (167)
88 cd04157 Arl6 Arl6 subfamily. 99.7 1.9E-17 4E-22 128.2 9.6 122 30-175 1-160 (162)
89 cd04121 Rab40 Rab40 subfamily. 99.7 1.5E-17 3.3E-22 132.3 9.2 129 27-176 5-164 (189)
90 COG1160 Predicted GTPases [Gen 99.7 2.2E-17 4.8E-22 142.9 10.5 130 27-175 177-347 (444)
91 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.6E-17 3.5E-22 129.3 8.8 127 28-175 2-160 (166)
92 cd01861 Rab6 Rab6 subfamily. 99.7 1.6E-17 3.5E-22 128.5 8.5 126 29-175 1-158 (161)
93 cd04122 Rab14 Rab14 subfamily. 99.7 1.7E-17 3.7E-22 129.3 8.6 126 29-175 3-160 (166)
94 cd04106 Rab23_lke Rab23-like s 99.7 3.7E-17 8E-22 126.6 10.4 127 30-175 2-159 (162)
95 cd01865 Rab3 Rab3 subfamily. 99.7 4E-17 8.7E-22 127.1 10.5 126 29-175 2-159 (165)
96 TIGR00491 aIF-2 translation in 99.7 1.2E-17 2.6E-22 152.8 8.6 182 27-224 3-266 (590)
97 cd04151 Arl1 Arl1 subfamily. 99.7 3.6E-17 7.9E-22 126.4 10.0 120 30-175 1-156 (158)
98 cd04150 Arf1_5_like Arf1-Arf5- 99.7 4.9E-17 1.1E-21 126.0 10.6 120 30-175 2-157 (159)
99 cd04124 RabL2 RabL2 subfamily. 99.7 4.2E-17 9.2E-22 126.5 10.2 125 30-176 2-155 (161)
100 KOG0078|consensus 99.7 6.4E-17 1.4E-21 126.4 11.0 136 20-176 4-171 (207)
101 PLN00223 ADP-ribosylation fact 99.7 4.3E-17 9.4E-22 129.0 10.3 124 26-175 15-174 (181)
102 cd04136 Rap_like Rap-like subf 99.7 4.5E-17 9.8E-22 126.2 10.2 124 29-175 2-159 (163)
103 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5E-17 1.1E-21 127.8 10.5 122 27-175 14-172 (174)
104 PRK07560 elongation factor EF- 99.7 3.1E-17 6.7E-22 154.9 11.0 104 25-130 17-122 (731)
105 cd04158 ARD1 ARD1 subfamily. 99.7 3.3E-17 7.2E-22 128.2 9.3 121 30-176 1-158 (169)
106 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 2.9E-17 6.4E-22 128.7 8.9 126 30-176 2-162 (170)
107 cd04119 RJL RJL (RabJ-Like) su 99.7 3E-17 6.5E-22 127.6 8.6 125 30-175 2-163 (168)
108 cd00877 Ran Ran (Ras-related n 99.7 5.8E-17 1.3E-21 126.5 9.9 126 30-176 2-156 (166)
109 cd04128 Spg1 Spg1p. Spg1p (se 99.7 4.7E-17 1E-21 128.9 9.4 129 30-176 2-163 (182)
110 cd04113 Rab4 Rab4 subfamily. 99.7 4.3E-17 9.4E-22 126.2 9.0 126 29-175 1-158 (161)
111 PTZ00416 elongation factor 2; 99.7 6E-17 1.3E-21 154.4 11.7 106 25-130 16-127 (836)
112 cd04109 Rab28 Rab28 subfamily. 99.7 7.8E-17 1.7E-21 131.0 10.7 127 30-176 2-163 (215)
113 cd04145 M_R_Ras_like M-Ras/R-R 99.7 8E-17 1.7E-21 124.9 10.3 127 29-175 3-160 (164)
114 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 9.8E-17 2.1E-21 129.1 10.8 129 30-177 2-166 (201)
115 smart00173 RAS Ras subfamily o 99.7 1E-16 2.2E-21 124.5 10.5 124 30-175 2-158 (164)
116 cd01868 Rab11_like Rab11-like. 99.7 4.7E-17 1E-21 126.5 8.6 129 28-175 3-161 (165)
117 KOG0463|consensus 99.7 2.1E-18 4.6E-23 144.8 0.8 205 28-242 133-413 (641)
118 cd04127 Rab27A Rab27a subfamil 99.7 1.2E-16 2.7E-21 126.0 10.8 132 27-175 3-173 (180)
119 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.1E-16 2.4E-21 123.5 10.1 123 30-175 1-156 (158)
120 smart00177 ARF ARF-like small 99.7 1.3E-16 2.8E-21 125.6 10.5 123 27-175 12-170 (175)
121 KOG0098|consensus 99.7 7.2E-17 1.6E-21 123.2 8.6 129 26-175 4-164 (216)
122 cd01895 EngA2 EngA2 subfamily. 99.7 1.4E-16 3E-21 124.2 10.5 129 28-175 2-171 (174)
123 cd04138 H_N_K_Ras_like H-Ras/N 99.7 7.8E-17 1.7E-21 124.5 8.9 124 29-175 2-158 (162)
124 KOG0080|consensus 99.7 3.6E-17 7.8E-22 121.8 6.6 130 27-175 10-170 (209)
125 PLN03118 Rab family protein; P 99.7 1.7E-16 3.6E-21 128.7 11.0 129 26-176 12-174 (211)
126 PTZ00133 ADP-ribosylation fact 99.7 1.7E-16 3.6E-21 125.7 10.7 124 26-175 15-174 (182)
127 cd04111 Rab39 Rab39 subfamily. 99.7 1.7E-16 3.7E-21 128.6 10.6 128 29-176 3-163 (211)
128 TIGR03594 GTPase_EngA ribosome 99.7 8.4E-17 1.8E-21 143.9 9.7 131 26-175 170-340 (429)
129 cd00879 Sar1 Sar1 subfamily. 99.7 1.5E-16 3.3E-21 126.7 10.2 123 27-175 18-187 (190)
130 cd04116 Rab9 Rab9 subfamily. 99.7 1.4E-16 2.9E-21 124.6 9.6 129 27-175 4-167 (170)
131 cd04110 Rab35 Rab35 subfamily. 99.7 1.1E-16 2.5E-21 128.5 9.1 129 27-176 5-164 (199)
132 KOG0464|consensus 99.7 6.9E-17 1.5E-21 137.3 8.1 138 22-165 31-199 (753)
133 PRK04004 translation initiatio 99.7 4.3E-17 9.2E-22 149.6 7.2 183 26-223 4-267 (586)
134 PRK15467 ethanolamine utilizat 99.7 1.3E-16 2.8E-21 123.5 8.8 115 29-176 2-144 (158)
135 cd01866 Rab2 Rab2 subfamily. 99.7 1.7E-16 3.7E-21 124.0 9.5 129 28-175 4-162 (168)
136 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.6E-16 5.6E-21 124.8 10.6 128 28-176 3-167 (183)
137 cd04117 Rab15 Rab15 subfamily. 99.7 2.8E-16 6.1E-21 121.9 10.6 125 30-175 2-158 (161)
138 cd04156 ARLTS1 ARLTS1 subfamil 99.7 2E-16 4.3E-21 122.3 9.7 124 30-175 1-158 (160)
139 cd04175 Rap1 Rap1 subgroup. T 99.7 3.3E-16 7.1E-21 121.7 10.9 124 29-175 2-159 (164)
140 cd04126 Rab20 Rab20 subfamily. 99.7 1.4E-16 3E-21 129.6 9.0 78 30-130 2-79 (220)
141 cd04112 Rab26 Rab26 subfamily. 99.7 3E-16 6.4E-21 125.3 10.9 128 30-177 2-161 (191)
142 cd01894 EngA1 EngA1 subfamily. 99.7 1.2E-16 2.6E-21 122.7 8.3 120 32-175 1-154 (157)
143 cd01862 Rab7 Rab7 subfamily. 99.7 3E-16 6.6E-21 122.6 10.5 127 30-176 2-164 (172)
144 cd01860 Rab5_related Rab5-rela 99.7 1.8E-16 3.9E-21 122.9 9.1 125 29-175 2-159 (163)
145 cd01897 NOG NOG1 is a nucleola 99.7 1.4E-16 2.9E-21 124.2 8.5 124 29-175 1-164 (168)
146 PTZ00369 Ras-like protein; Pro 99.7 1.4E-16 3.1E-21 126.9 8.8 126 28-176 5-164 (189)
147 PLN03110 Rab GTPase; Provision 99.7 3.8E-16 8.3E-21 127.0 11.3 129 27-176 11-171 (216)
148 PLN03071 GTP-binding nuclear p 99.7 3.6E-16 7.8E-21 127.4 10.9 129 26-176 11-169 (219)
149 PF10662 PduV-EutP: Ethanolami 99.7 1.5E-16 3.3E-21 118.9 7.9 113 28-175 1-142 (143)
150 cd04140 ARHI_like ARHI subfami 99.7 2.1E-16 4.5E-21 123.1 8.8 126 29-176 2-162 (165)
151 cd00154 Rab Rab family. Rab G 99.7 3.7E-16 8E-21 119.8 10.0 127 30-175 2-158 (159)
152 smart00175 RAB Rab subfamily o 99.7 3.6E-16 7.9E-21 121.1 10.1 125 30-175 2-158 (164)
153 cd04114 Rab30 Rab30 subfamily. 99.7 7.2E-16 1.6E-20 120.2 11.8 129 26-175 5-165 (169)
154 cd01863 Rab18 Rab18 subfamily. 99.7 2E-16 4.3E-21 122.4 8.3 125 30-175 2-158 (161)
155 PRK00093 GTP-binding protein D 99.7 4.4E-16 9.6E-21 139.5 11.5 130 27-175 172-340 (435)
156 smart00178 SAR Sar1p-like memb 99.7 4E-16 8.7E-21 123.8 9.9 124 26-175 15-181 (184)
157 TIGR00490 aEF-2 translation el 99.7 3.7E-16 8.1E-21 147.2 11.3 104 25-130 16-121 (720)
158 PRK03003 GTP-binding protein D 99.7 3.6E-16 7.8E-21 141.1 10.7 131 27-176 210-379 (472)
159 cd04115 Rab33B_Rab33A Rab33B/R 99.7 5.6E-16 1.2E-20 121.3 10.3 127 28-175 2-165 (170)
160 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2.5E-16 5.5E-21 123.6 8.1 125 29-176 3-161 (172)
161 cd04155 Arl3 Arl3 subfamily. 99.7 4.5E-16 9.7E-21 121.9 9.4 124 26-175 12-171 (173)
162 cd04142 RRP22 RRP22 subfamily. 99.7 2.1E-16 4.6E-21 126.8 7.7 131 30-179 2-174 (198)
163 cd04118 Rab24 Rab24 subfamily. 99.7 5E-16 1.1E-20 124.0 9.6 131 30-177 2-164 (193)
164 cd04125 RabA_like RabA-like su 99.7 7.7E-16 1.7E-20 122.5 10.6 127 30-177 2-160 (188)
165 cd04144 Ras2 Ras2 subfamily. 99.7 4.7E-16 1E-20 124.0 9.3 124 30-176 1-160 (190)
166 PLN03108 Rab family protein; P 99.7 4.1E-16 9E-21 126.3 9.2 130 26-176 4-165 (210)
167 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 2.2E-16 4.8E-21 125.0 7.3 130 26-176 3-177 (182)
168 cd01898 Obg Obg subfamily. Th 99.7 5.2E-16 1.1E-20 121.1 9.3 125 30-175 2-167 (170)
169 cd04132 Rho4_like Rho4-like su 99.7 1.2E-15 2.5E-20 121.2 11.2 127 30-177 2-165 (187)
170 COG5258 GTPBP1 GTPase [General 99.6 1.2E-16 2.6E-21 134.6 5.4 181 26-213 115-368 (527)
171 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.2E-15 2.6E-20 118.4 10.7 128 30-175 2-160 (164)
172 cd04176 Rap2 Rap2 subgroup. T 99.6 7.2E-16 1.6E-20 119.6 9.4 124 29-175 2-159 (163)
173 cd01875 RhoG RhoG subfamily. 99.6 1.1E-15 2.4E-20 122.0 10.5 130 29-177 4-175 (191)
174 KOG1423|consensus 99.6 8.1E-16 1.8E-20 126.3 9.6 86 26-130 70-167 (379)
175 cd01879 FeoB Ferrous iron tran 99.6 2.8E-16 6E-21 121.0 6.5 120 33-175 1-153 (158)
176 cd04133 Rop_like Rop subfamily 99.6 3.2E-16 6.9E-21 123.4 6.9 127 29-176 2-170 (176)
177 cd04159 Arl10_like Arl10-like 99.6 1.2E-15 2.7E-20 117.0 10.0 123 31-175 2-157 (159)
178 cd04123 Rab21 Rab21 subfamily. 99.6 8.2E-16 1.8E-20 118.7 8.9 126 29-175 1-158 (162)
179 cd01871 Rac1_like Rac1-like su 99.6 6.1E-16 1.3E-20 121.6 8.3 125 29-175 2-171 (174)
180 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 9.2E-16 2E-20 125.5 9.4 130 27-177 12-186 (232)
181 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.3E-15 2.8E-20 118.6 9.7 78 31-130 2-79 (164)
182 cd01874 Cdc42 Cdc42 subfamily. 99.6 5.8E-16 1.2E-20 121.9 7.6 127 29-175 2-171 (175)
183 cd04131 Rnd Rnd subfamily. Th 99.6 5.1E-16 1.1E-20 122.5 7.3 126 29-176 2-173 (178)
184 cd04177 RSR1 RSR1 subgroup. R 99.6 1.7E-15 3.7E-20 118.2 10.2 125 29-175 2-160 (168)
185 cd04164 trmE TrmE (MnmE, ThdF, 99.6 8.5E-16 1.8E-20 117.9 8.3 119 30-175 3-153 (157)
186 COG0486 ThdF Predicted GTPase 99.6 8.3E-16 1.8E-20 133.5 9.1 124 28-176 217-373 (454)
187 PRK00089 era GTPase Era; Revie 99.6 1.2E-15 2.6E-20 129.7 10.1 129 27-176 4-168 (292)
188 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.2E-15 2.6E-20 119.1 9.1 123 30-175 1-165 (167)
189 KOG0095|consensus 99.6 9.6E-16 2.1E-20 112.8 7.8 129 27-175 6-165 (213)
190 PRK00454 engB GTP-binding prot 99.6 1.2E-15 2.5E-20 122.0 9.1 139 16-175 12-190 (196)
191 TIGR03598 GTPase_YsxC ribosome 99.6 2.3E-15 5E-20 118.9 10.6 131 17-168 7-179 (179)
192 cd04134 Rho3 Rho3 subfamily. 99.6 9.4E-16 2E-20 122.2 8.4 130 29-178 1-173 (189)
193 KOG0086|consensus 99.6 2.3E-15 5E-20 111.3 9.7 130 26-174 7-166 (214)
194 cd04147 Ras_dva Ras-dva subfam 99.6 1.2E-15 2.5E-20 122.5 8.9 128 30-176 1-160 (198)
195 cd04139 RalA_RalB RalA/RalB su 99.6 4.1E-15 8.8E-20 115.1 11.2 124 30-175 2-158 (164)
196 cd04135 Tc10 TC10 subfamily. 99.6 1.5E-15 3.2E-20 119.1 8.7 124 30-175 2-170 (174)
197 PRK12299 obgE GTPase CgtA; Rev 99.6 2.4E-15 5.2E-20 129.4 10.7 129 28-176 158-325 (335)
198 smart00176 RAN Ran (Ras-relate 99.6 1.4E-15 3.1E-20 122.0 8.5 122 34-176 1-151 (200)
199 cd01878 HflX HflX subfamily. 99.6 1.7E-15 3.7E-20 122.0 8.8 124 27-175 40-201 (204)
200 smart00174 RHO Rho (Ras homolo 99.6 1.8E-15 3.8E-20 118.7 8.6 125 31-176 1-169 (174)
201 PRK05291 trmE tRNA modificatio 99.6 1.4E-15 3E-20 136.1 8.9 121 28-176 215-367 (449)
202 cd01893 Miro1 Miro1 subfamily. 99.6 4.7E-15 1E-19 115.5 10.7 126 30-176 2-161 (166)
203 cd04143 Rhes_like Rhes_like su 99.6 1.9E-15 4E-20 125.2 8.7 126 30-176 2-168 (247)
204 TIGR02528 EutP ethanolamine ut 99.6 6.6E-16 1.4E-20 117.1 5.5 112 30-175 2-141 (142)
205 PF00025 Arf: ADP-ribosylation 99.6 1.7E-15 3.7E-20 119.2 7.8 127 26-175 12-172 (175)
206 cd00157 Rho Rho (Ras homology) 99.6 2.3E-15 5E-20 117.5 8.5 127 30-175 2-169 (171)
207 TIGR03156 GTP_HflX GTP-binding 99.6 2.4E-15 5.3E-20 130.3 9.2 122 27-175 188-348 (351)
208 KOG0465|consensus 99.6 6.8E-16 1.5E-20 136.6 5.7 125 22-152 33-187 (721)
209 cd01892 Miro2 Miro2 subfamily. 99.6 2.5E-15 5.4E-20 117.6 8.3 132 27-177 3-164 (169)
210 COG0218 Predicted GTPase [Gene 99.6 3.7E-15 8.1E-20 116.4 9.1 139 16-175 12-193 (200)
211 PRK04213 GTP-binding protein; 99.6 3E-15 6.5E-20 120.3 8.9 125 26-176 7-189 (201)
212 PRK12297 obgE GTPase CgtA; Rev 99.6 7.5E-15 1.6E-19 129.5 12.0 123 29-175 159-323 (424)
213 cd00876 Ras Ras family. The R 99.6 3.4E-15 7.3E-20 115.0 8.5 124 30-175 1-157 (160)
214 PRK09554 feoB ferrous iron tra 99.6 4.4E-15 9.4E-20 139.9 10.7 126 28-176 3-165 (772)
215 cd04137 RheB Rheb (Ras Homolog 99.6 9.2E-15 2E-19 115.3 10.8 126 29-176 2-160 (180)
216 TIGR00231 small_GTP small GTP- 99.6 1.3E-14 2.9E-19 110.8 11.2 126 29-175 2-160 (161)
217 KOG0087|consensus 99.6 1.7E-15 3.7E-20 118.1 5.8 131 26-175 12-172 (222)
218 PRK09518 bifunctional cytidyla 99.6 5.5E-15 1.2E-19 139.4 10.3 131 27-176 449-618 (712)
219 cd04130 Wrch_1 Wrch-1 subfamil 99.6 2.7E-15 5.9E-20 117.7 6.7 125 30-175 2-170 (173)
220 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.1E-14 2.4E-19 118.5 10.4 127 29-177 2-174 (222)
221 PRK12298 obgE GTPase CgtA; Rev 99.6 1.2E-14 2.6E-19 127.4 10.3 128 29-176 160-330 (390)
222 cd01870 RhoA_like RhoA-like su 99.6 1.1E-14 2.4E-19 114.2 9.0 125 29-175 2-171 (175)
223 PF00071 Ras: Ras family; Int 99.6 2.1E-14 4.5E-19 111.2 10.3 125 30-175 1-157 (162)
224 TIGR02729 Obg_CgtA Obg family 99.6 1.7E-14 3.7E-19 124.0 10.7 126 28-175 157-325 (329)
225 KOG0091|consensus 99.6 3.9E-15 8.4E-20 111.3 5.5 128 28-175 8-169 (213)
226 cd04146 RERG_RasL11_like RERG/ 99.6 9.1E-15 2E-19 113.7 7.8 124 30-175 1-160 (165)
227 PTZ00132 GTP-binding nuclear p 99.6 3.3E-14 7.2E-19 115.5 11.4 130 25-176 6-165 (215)
228 KOG0466|consensus 99.6 7.4E-16 1.6E-20 126.4 1.6 188 27-230 37-300 (466)
229 PRK11058 GTPase HflX; Provisio 99.6 1.5E-14 3.2E-19 128.3 9.6 126 27-176 196-359 (426)
230 cd04163 Era Era subfamily. Er 99.6 3E-14 6.4E-19 110.1 10.2 127 28-175 3-165 (168)
231 KOG0073|consensus 99.6 3.6E-14 7.7E-19 106.3 9.8 127 26-175 14-174 (185)
232 PRK12296 obgE GTPase CgtA; Rev 99.5 2.2E-14 4.9E-19 128.2 10.2 126 28-175 159-336 (500)
233 cd04148 RGK RGK subfamily. Th 99.5 3.4E-14 7.3E-19 116.0 10.1 123 30-176 2-160 (221)
234 TIGR00450 mnmE_trmE_thdF tRNA 99.5 3E-14 6.5E-19 127.0 10.5 122 27-175 202-356 (442)
235 cd04103 Centaurin_gamma Centau 99.5 4.4E-14 9.4E-19 109.3 8.4 119 30-175 2-155 (158)
236 COG0370 FeoB Fe2+ transport sy 99.5 1.4E-14 3.1E-19 130.9 6.2 126 28-176 3-161 (653)
237 KOG0097|consensus 99.5 6.5E-14 1.4E-18 102.3 8.5 130 23-171 6-165 (215)
238 cd01881 Obg_like The Obg-like 99.5 4.7E-14 1E-18 110.5 7.7 78 33-130 1-86 (176)
239 cd01873 RhoBTB RhoBTB subfamil 99.5 4.5E-14 9.8E-19 112.9 7.6 131 29-175 3-192 (195)
240 KOG0093|consensus 99.5 7.6E-14 1.7E-18 102.6 7.6 128 27-175 20-179 (193)
241 KOG0467|consensus 99.5 8.6E-14 1.9E-18 126.1 9.6 103 22-130 3-107 (887)
242 COG2229 Predicted GTPase [Gene 99.5 3.3E-13 7.1E-18 103.4 11.3 139 27-177 9-176 (187)
243 KOG0079|consensus 99.5 2E-14 4.2E-19 105.8 4.4 132 27-177 7-167 (198)
244 TIGR00437 feoB ferrous iron tr 99.5 3.3E-14 7.2E-19 131.0 6.7 119 35-176 1-152 (591)
245 cd00882 Ras_like_GTPase Ras-li 99.5 1.3E-13 2.8E-18 104.2 8.8 125 33-175 1-156 (157)
246 cd00880 Era_like Era (E. coli 99.5 9.4E-14 2E-18 106.1 7.9 125 33-175 1-160 (163)
247 KOG0088|consensus 99.5 6.2E-15 1.3E-19 109.6 1.2 132 27-177 12-173 (218)
248 cd01896 DRG The developmentall 99.5 3.2E-13 6.9E-18 111.0 10.4 81 30-130 2-89 (233)
249 cd04129 Rho2 Rho2 subfamily. 99.5 1.2E-13 2.5E-18 109.9 7.5 126 29-176 2-170 (187)
250 KOG1191|consensus 99.4 1.3E-13 2.8E-18 119.9 5.8 85 27-130 267-360 (531)
251 PF01926 MMR_HSR1: 50S ribosom 99.4 8.3E-13 1.8E-17 96.7 8.8 82 30-130 1-91 (116)
252 KOG1143|consensus 99.4 2.7E-14 5.8E-19 120.2 0.7 184 28-213 167-422 (591)
253 COG1163 DRG Predicted GTPase [ 99.4 4.9E-13 1.1E-17 111.0 6.8 85 26-130 61-152 (365)
254 KOG0468|consensus 99.4 1.8E-12 3.8E-17 116.1 10.5 104 26-130 126-232 (971)
255 KOG1489|consensus 99.4 1.7E-12 3.7E-17 107.4 9.0 126 28-175 196-363 (366)
256 KOG0083|consensus 99.4 1.9E-13 4E-18 99.0 2.3 123 33-175 2-156 (192)
257 KOG0070|consensus 99.4 8.4E-13 1.8E-17 101.3 5.8 86 22-130 11-96 (181)
258 COG2262 HflX GTPases [General 99.4 2.4E-12 5.2E-17 110.3 8.8 126 26-176 190-353 (411)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 5E-12 1.1E-16 101.3 9.6 102 29-151 1-113 (196)
260 cd01876 YihA_EngB The YihA (En 99.3 6E-12 1.3E-16 97.3 9.1 124 31-175 2-167 (170)
261 PRK14845 translation initiatio 99.3 3.1E-12 6.7E-17 123.0 7.8 170 40-224 473-723 (1049)
262 COG1084 Predicted GTPase [Gene 99.3 8.1E-12 1.7E-16 104.2 8.9 84 27-130 167-259 (346)
263 cd04105 SR_beta Signal recogni 99.3 1.3E-11 2.9E-16 99.3 9.0 83 29-130 1-84 (203)
264 KOG0469|consensus 99.3 6.7E-12 1.4E-16 109.5 7.2 106 25-130 16-133 (842)
265 COG1100 GTPase SAR1 and relate 99.3 2.8E-11 6.1E-16 98.4 9.8 84 29-130 6-89 (219)
266 KOG1144|consensus 99.3 5.5E-13 1.2E-17 120.5 -0.4 90 27-130 474-575 (1064)
267 COG4917 EutP Ethanolamine util 99.3 8.4E-12 1.8E-16 89.6 5.6 115 28-176 1-143 (148)
268 KOG0075|consensus 99.3 9.2E-12 2E-16 91.7 5.7 124 28-176 20-179 (186)
269 PLN00023 GTP-binding protein; 99.3 3.7E-11 8.1E-16 101.8 10.2 95 22-130 15-118 (334)
270 COG3596 Predicted GTPase [Gene 99.3 6.1E-12 1.3E-16 102.6 5.2 130 25-175 36-218 (296)
271 KOG0076|consensus 99.3 1.1E-11 2.3E-16 94.0 5.9 137 25-176 14-184 (197)
272 cd04102 RabL3 RabL3 (Rab-like3 99.2 3.5E-11 7.6E-16 96.6 9.0 87 30-130 2-89 (202)
273 PRK09866 hypothetical protein; 99.2 5.6E-11 1.2E-15 107.7 10.6 83 94-176 229-350 (741)
274 KOG0395|consensus 99.2 2.7E-11 5.9E-16 96.7 7.0 128 27-176 2-162 (196)
275 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.7E-10 3.8E-15 94.3 10.9 115 26-166 37-183 (225)
276 KOG0081|consensus 99.2 6.5E-12 1.4E-16 93.7 2.2 131 28-175 9-177 (219)
277 PF08477 Miro: Miro-like prote 99.2 7.1E-11 1.5E-15 86.6 6.3 85 30-130 1-85 (119)
278 KOG0071|consensus 99.2 1.4E-10 3E-15 84.9 7.4 82 26-130 15-96 (180)
279 cd01853 Toc34_like Toc34-like 99.1 8.4E-10 1.8E-14 91.3 11.9 106 26-151 29-146 (249)
280 cd04104 p47_IIGP_like p47 (47- 99.1 1.7E-10 3.7E-15 92.5 7.5 131 29-175 2-180 (197)
281 PF09439 SRPRB: Signal recogni 99.1 1.7E-10 3.7E-15 90.2 6.2 83 27-130 2-87 (181)
282 KOG0072|consensus 99.1 8.3E-11 1.8E-15 86.5 3.9 127 26-175 16-175 (182)
283 PTZ00099 rab6; Provisional 99.1 1.3E-10 2.8E-15 91.5 5.1 82 91-176 25-139 (176)
284 PRK09435 membrane ATPase/prote 99.1 3.3E-10 7.1E-15 97.1 8.0 148 26-176 54-257 (332)
285 KOG0074|consensus 99.1 9.7E-10 2.1E-14 80.7 9.2 83 26-130 15-97 (185)
286 PTZ00258 GTP-binding protein; 99.1 4.6E-10 9.9E-15 98.0 8.6 90 27-130 20-127 (390)
287 cd01900 YchF YchF subfamily. 99.1 4.3E-10 9.2E-15 94.0 7.4 86 31-130 1-104 (274)
288 TIGR00991 3a0901s02IAP34 GTP-b 99.0 2.7E-09 5.8E-14 90.0 11.4 104 27-150 37-149 (313)
289 PRK09601 GTP-binding protein Y 99.0 9.6E-10 2.1E-14 94.9 8.5 88 29-130 3-108 (364)
290 PF04548 AIG1: AIG1 family; I 99.0 3.2E-09 6.9E-14 86.1 9.9 103 29-152 1-114 (212)
291 KOG4252|consensus 99.0 2.7E-11 5.8E-16 92.2 -2.1 130 25-175 17-177 (246)
292 cd01850 CDC_Septin CDC/Septin. 99.0 3.1E-09 6.7E-14 89.5 9.6 73 28-108 4-76 (276)
293 cd01899 Ygr210 Ygr210 subfamil 99.0 2.1E-09 4.5E-14 92.0 8.3 86 31-130 1-111 (318)
294 COG0536 Obg Predicted GTPase [ 99.0 1.6E-09 3.5E-14 91.0 7.3 125 30-175 161-329 (369)
295 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 3.7E-09 8E-14 86.2 9.2 83 30-130 1-88 (232)
296 PRK09602 translation-associate 99.0 2.8E-09 6.2E-14 93.8 9.0 87 29-129 2-113 (396)
297 KOG0393|consensus 98.9 6.4E-10 1.4E-14 87.5 3.0 130 27-177 3-177 (198)
298 KOG0410|consensus 98.9 2.4E-09 5.2E-14 89.2 6.4 130 26-175 176-337 (410)
299 KOG1673|consensus 98.9 1.9E-09 4E-14 80.4 4.7 131 27-175 19-182 (205)
300 PF03029 ATP_bind_1: Conserved 98.8 1.9E-10 4E-15 94.6 -2.8 80 96-175 92-233 (238)
301 TIGR00101 ureG urease accessor 98.8 1.4E-08 3.1E-13 81.4 7.9 77 95-176 92-193 (199)
302 PF00350 Dynamin_N: Dynamin fa 98.8 3.9E-09 8.5E-14 82.1 3.9 36 95-130 101-140 (168)
303 TIGR00993 3a0901s04IAP86 chlor 98.8 5.6E-08 1.2E-12 88.9 11.4 106 27-152 117-234 (763)
304 COG0012 Predicted GTPase, prob 98.8 5E-08 1.1E-12 83.4 10.2 88 29-130 3-109 (372)
305 TIGR00073 hypB hydrogenase acc 98.8 2.5E-08 5.5E-13 80.5 8.0 146 24-175 18-203 (207)
306 COG0480 FusA Translation elong 98.8 8E-09 1.7E-13 96.3 5.0 60 198-257 7-70 (697)
307 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.3E-08 2.8E-13 78.5 5.2 57 27-105 101-157 (157)
308 COG0378 HypB Ni2+-binding GTPa 98.7 2.7E-08 5.9E-13 77.6 6.1 142 28-175 13-197 (202)
309 TIGR02836 spore_IV_A stage IV 98.7 1.1E-07 2.4E-12 82.6 10.3 102 26-129 15-156 (492)
310 cd04178 Nucleostemin_like Nucl 98.7 1.8E-08 3.9E-13 78.8 4.9 56 28-105 117-172 (172)
311 KOG0462|consensus 98.7 1.9E-08 4.2E-13 89.1 5.1 64 194-257 53-117 (650)
312 KOG0090|consensus 98.7 2.1E-08 4.7E-13 78.9 4.7 83 27-132 37-122 (238)
313 KOG1532|consensus 98.7 5.3E-09 1.1E-13 85.4 1.2 29 26-54 17-45 (366)
314 KOG0077|consensus 98.7 1.5E-07 3.3E-12 71.1 8.8 82 26-130 18-99 (193)
315 PF03193 DUF258: Protein of un 98.7 1.4E-08 3.1E-13 77.9 3.2 65 29-108 36-100 (161)
316 KOG2486|consensus 98.7 9.2E-08 2E-12 78.4 7.6 93 18-130 126-231 (320)
317 KOG0052|consensus 98.6 8.7E-09 1.9E-13 88.2 0.7 94 26-128 5-115 (391)
318 PF05049 IIGP: Interferon-indu 98.6 1.3E-07 2.8E-12 82.0 7.7 24 27-50 34-57 (376)
319 PF03308 ArgK: ArgK protein; 98.6 2.5E-08 5.4E-13 81.5 3.0 147 27-176 28-227 (266)
320 TIGR00750 lao LAO/AO transport 98.6 1E-07 2.2E-12 81.4 6.4 80 94-176 126-235 (300)
321 cd01849 YlqF_related_GTPase Yl 98.6 7.6E-08 1.6E-12 74.1 5.2 57 27-105 99-155 (155)
322 PRK10463 hydrogenase nickel in 98.6 2.6E-07 5.7E-12 77.5 7.8 43 131-175 240-285 (290)
323 PRK13768 GTPase; Provisional 98.5 5.7E-08 1.2E-12 80.9 3.6 23 154-176 222-244 (253)
324 smart00053 DYNc Dynamin, GTPas 98.5 9.2E-07 2E-11 72.7 10.6 26 27-52 25-50 (240)
325 KOG1486|consensus 98.5 1.3E-07 2.8E-12 76.4 5.2 84 27-130 61-151 (364)
326 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1E-07 2.2E-12 72.2 4.3 22 30-51 85-106 (141)
327 cd01855 YqeH YqeH. YqeH is an 98.5 1.3E-07 2.9E-12 75.2 5.1 98 108-225 24-151 (190)
328 cd01855 YqeH YqeH. YqeH is an 98.5 1.4E-07 3.1E-12 75.0 4.7 63 29-105 128-190 (190)
329 KOG1490|consensus 98.5 3E-07 6.4E-12 81.0 6.4 126 26-171 166-333 (620)
330 COG5019 CDC3 Septin family pro 98.5 1E-06 2.3E-11 75.1 9.4 73 27-108 22-95 (373)
331 PRK09563 rbgA GTPase YlqF; Rev 98.5 2.4E-07 5.1E-12 78.6 5.6 59 27-107 120-178 (287)
332 KOG3886|consensus 98.5 2.4E-07 5.2E-12 74.0 5.2 86 27-130 3-93 (295)
333 COG0481 LepA Membrane GTPase L 98.5 1.1E-07 2.5E-12 83.1 3.6 61 196-256 4-65 (603)
334 COG1161 Predicted GTPases [Gen 98.5 1.7E-07 3.7E-12 80.6 4.7 57 28-106 132-188 (322)
335 TIGR03596 GTPase_YlqF ribosome 98.4 2.5E-07 5.4E-12 78.1 5.1 57 27-105 117-173 (276)
336 cd01851 GBP Guanylate-binding 98.4 8.3E-07 1.8E-11 72.5 7.5 90 26-129 5-102 (224)
337 PRK12288 GTPase RsgA; Reviewed 98.4 1.9E-07 4.1E-12 81.0 3.9 24 30-53 207-230 (347)
338 KOG3883|consensus 98.4 9.5E-07 2E-11 66.0 6.6 88 26-130 7-96 (198)
339 TIGR00092 GTP-binding protein 98.4 1E-06 2.2E-11 76.4 7.9 88 29-130 3-109 (368)
340 KOG1547|consensus 98.4 3.1E-06 6.8E-11 68.1 9.9 69 29-107 47-116 (336)
341 KOG4423|consensus 98.4 1.1E-08 2.3E-13 78.7 -3.9 136 26-178 23-193 (229)
342 PF00735 Septin: Septin; Inte 98.4 6.6E-07 1.4E-11 75.4 6.2 72 28-107 4-75 (281)
343 COG5192 BMS1 GTP-binding prote 98.4 4.7E-06 1E-10 74.6 11.2 111 27-164 68-211 (1077)
344 KOG0467|consensus 98.4 2.9E-07 6.2E-12 84.5 3.7 58 199-256 7-66 (887)
345 cd01856 YlqF YlqF. Proteins o 98.4 7.1E-07 1.5E-11 69.8 5.4 25 27-51 114-138 (171)
346 COG5256 TEF1 Translation elong 98.3 3.8E-07 8.1E-12 78.8 3.9 57 201-257 7-80 (428)
347 KOG0096|consensus 98.3 8.3E-07 1.8E-11 68.7 5.3 131 27-175 9-165 (216)
348 KOG1491|consensus 98.3 2.9E-06 6.3E-11 71.6 8.6 90 27-130 19-126 (391)
349 COG4108 PrfC Peptide chain rel 98.3 4.6E-07 1E-11 78.6 3.7 60 198-257 9-76 (528)
350 TIGR00157 ribosome small subun 98.3 7.1E-07 1.5E-11 73.9 4.6 24 29-52 121-144 (245)
351 KOG0464|consensus 98.3 7.1E-07 1.5E-11 77.0 4.3 61 197-257 33-97 (753)
352 PRK12289 GTPase RsgA; Reviewed 98.3 6.3E-07 1.4E-11 77.8 4.0 23 30-52 174-196 (352)
353 KOG0469|consensus 98.3 6.9E-07 1.5E-11 78.7 4.0 58 200-257 18-77 (842)
354 COG1162 Predicted GTPases [Gen 98.3 6E-07 1.3E-11 75.2 3.4 22 29-50 165-186 (301)
355 COG1703 ArgK Putative periplas 98.3 2.6E-06 5.5E-11 70.9 7.0 146 26-176 49-251 (323)
356 KOG1707|consensus 98.3 2.7E-06 5.7E-11 76.3 7.2 128 27-176 8-172 (625)
357 TIGR03597 GTPase_YqeH ribosome 98.2 1.3E-06 2.7E-11 76.5 4.4 62 29-107 155-216 (360)
358 cd01859 MJ1464 MJ1464. This f 98.2 1.9E-06 4.2E-11 66.2 4.9 24 27-50 100-123 (156)
359 PRK07560 elongation factor EF- 98.2 8.3E-07 1.8E-11 84.6 3.4 58 199-256 18-77 (731)
360 PRK13796 GTPase YqeH; Provisio 98.2 1.5E-06 3.3E-11 76.1 3.9 61 29-106 161-221 (365)
361 PLN00116 translation elongatio 98.2 1.6E-06 3.4E-11 83.8 4.0 58 199-256 17-76 (843)
362 TIGR03596 GTPase_YlqF ribosome 98.1 1.5E-06 3.2E-11 73.4 2.6 113 103-225 5-142 (276)
363 TIGR03597 GTPase_YqeH ribosome 98.1 3.6E-06 7.8E-11 73.7 5.0 118 106-244 51-202 (360)
364 PRK10416 signal recognition pa 98.1 3E-05 6.5E-10 66.6 10.4 26 26-51 112-137 (318)
365 TIGR00503 prfC peptide chain r 98.1 2.8E-06 6.1E-11 77.7 4.2 58 199-256 9-74 (527)
366 PTZ00416 elongation factor 2; 98.1 2.2E-06 4.8E-11 82.6 3.6 58 199-256 17-76 (836)
367 KOG2655|consensus 98.1 8.3E-06 1.8E-10 70.1 6.6 71 28-107 21-91 (366)
368 KOG1487|consensus 98.1 2.9E-06 6.3E-11 69.0 3.3 82 29-130 60-148 (358)
369 cd01854 YjeQ_engC YjeQ/EngC. 98.1 3.9E-06 8.5E-11 71.1 4.2 24 29-52 162-185 (287)
370 PRK05433 GTP-binding protein L 98.1 3.1E-06 6.8E-11 78.7 3.8 58 199-256 5-63 (600)
371 PRK00007 elongation factor G; 98.1 3.8E-06 8.3E-11 79.6 4.4 59 198-256 7-69 (693)
372 cd01856 YlqF YlqF. Proteins o 98.0 2.3E-06 4.9E-11 67.0 2.2 114 102-226 2-140 (171)
373 PRK12739 elongation factor G; 98.0 3.2E-06 7E-11 80.1 3.7 60 198-257 5-68 (691)
374 TIGR00157 ribosome small subun 98.0 4E-06 8.8E-11 69.4 3.7 46 154-224 98-143 (245)
375 KOG1424|consensus 98.0 3.8E-06 8.2E-11 74.4 3.5 57 28-106 314-370 (562)
376 PRK00098 GTPase RsgA; Reviewed 98.0 4.8E-06 1E-10 71.0 4.0 24 29-52 165-188 (298)
377 PRK05124 cysN sulfate adenylyl 98.0 4.6E-06 9.9E-11 75.5 4.1 56 201-256 27-101 (474)
378 TIGR00064 ftsY signal recognit 98.0 2.9E-05 6.3E-10 65.3 8.6 25 26-50 70-94 (272)
379 cd01858 NGP_1 NGP-1. Autoanti 98.0 4.8E-06 1E-10 64.1 3.6 68 156-238 72-139 (157)
380 TIGR00484 EF-G translation elo 98.0 4.5E-06 9.8E-11 79.1 4.1 59 198-256 7-69 (689)
381 PRK00741 prfC peptide chain re 98.0 4.8E-06 1E-10 76.2 4.1 58 199-256 8-73 (526)
382 PLN00043 elongation factor 1-a 98.0 4.8E-06 1E-10 74.8 3.6 57 201-257 7-80 (447)
383 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.9E-06 4.2E-11 73.0 0.9 114 102-225 7-145 (287)
384 PRK14974 cell division protein 98.0 2.6E-05 5.6E-10 67.3 7.5 25 26-50 138-162 (336)
385 COG1217 TypA Predicted membran 98.0 7.2E-06 1.6E-10 71.9 3.9 53 200-252 4-58 (603)
386 cd01849 YlqF_related_GTPase Yl 98.0 1.3E-05 2.8E-10 61.6 4.8 83 154-243 60-142 (155)
387 KOG2485|consensus 97.9 1.3E-05 2.8E-10 67.0 4.5 65 27-105 142-206 (335)
388 PRK13796 GTPase YqeH; Provisio 97.9 2.3E-05 4.9E-10 68.7 5.8 78 149-247 129-211 (365)
389 KOG0465|consensus 97.9 5.5E-06 1.2E-10 74.7 1.7 62 196-257 34-99 (721)
390 TIGR01425 SRP54_euk signal rec 97.8 6.6E-05 1.4E-09 66.6 7.9 24 27-50 99-122 (429)
391 cd00066 G-alpha G protein alph 97.8 0.0003 6.5E-09 60.6 11.7 69 95-163 161-238 (317)
392 PF00448 SRP54: SRP54-type pro 97.8 2.6E-05 5.7E-10 62.3 4.5 25 28-52 1-25 (196)
393 KOG1954|consensus 97.8 6.7E-05 1.5E-09 64.2 7.1 103 30-133 60-196 (532)
394 PRK12317 elongation factor 1-a 97.8 1.4E-05 3.1E-10 71.6 3.2 56 201-256 6-78 (425)
395 cd01859 MJ1464 MJ1464. This f 97.8 3.1E-05 6.6E-10 59.5 4.4 53 154-223 71-123 (156)
396 smart00275 G_alpha G protein a 97.8 0.00031 6.7E-09 61.1 11.1 68 95-162 184-260 (342)
397 KOG0448|consensus 97.7 0.00021 4.6E-09 65.6 9.7 104 27-130 108-244 (749)
398 PTZ00141 elongation factor 1- 97.7 2.3E-05 4.9E-10 70.5 3.3 56 202-257 8-80 (446)
399 PRK12289 GTPase RsgA; Reviewed 97.7 7E-05 1.5E-09 65.1 5.9 47 154-225 150-196 (352)
400 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 0.00017 3.8E-09 54.4 6.7 23 203-225 85-107 (141)
401 cd03112 CobW_like The function 97.6 0.00021 4.6E-09 55.1 7.3 22 30-51 2-23 (158)
402 PRK10218 GTP-binding protein; 97.6 3.3E-05 7.3E-10 71.7 3.1 57 200-256 4-62 (607)
403 PRK00098 GTPase RsgA; Reviewed 97.6 6.8E-05 1.5E-09 64.0 4.7 46 154-224 142-187 (298)
404 PRK12288 GTPase RsgA; Reviewed 97.6 5.3E-05 1.2E-09 65.8 4.0 47 154-225 183-229 (347)
405 KOG0458|consensus 97.6 7.4E-05 1.6E-09 67.3 4.9 58 200-257 176-250 (603)
406 KOG2484|consensus 97.6 5.2E-05 1.1E-09 65.4 3.5 59 27-107 251-309 (435)
407 PRK11889 flhF flagellar biosyn 97.6 0.00038 8.2E-09 61.0 8.4 24 27-50 240-263 (436)
408 TIGR00490 aEF-2 translation el 97.6 5.6E-05 1.2E-09 72.1 3.6 57 200-256 18-76 (720)
409 PRK05506 bifunctional sulfate 97.6 6.1E-05 1.3E-09 70.9 3.7 55 202-256 25-98 (632)
410 PRK13351 elongation factor G; 97.6 6.9E-05 1.5E-09 71.2 4.1 59 198-256 5-67 (687)
411 PRK14722 flhF flagellar biosyn 97.6 0.00011 2.5E-09 64.1 5.1 25 27-51 136-160 (374)
412 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00013 2.7E-09 62.0 4.6 47 154-225 139-185 (287)
413 TIGR00483 EF-1_alpha translati 97.5 9.8E-05 2.1E-09 66.2 4.0 56 201-256 7-79 (426)
414 COG1618 Predicted nucleotide k 97.4 0.0014 3.1E-08 49.9 8.7 23 28-50 5-27 (179)
415 PF05783 DLIC: Dynein light in 97.4 0.00045 9.8E-09 62.3 7.1 22 28-49 25-46 (472)
416 PRK10751 molybdopterin-guanine 97.4 0.00061 1.3E-08 53.1 6.7 25 26-50 4-28 (173)
417 KOG2423|consensus 97.4 8.7E-05 1.9E-09 64.0 2.0 29 26-54 305-333 (572)
418 cd03115 SRP The signal recogni 97.4 0.00074 1.6E-08 52.7 7.1 21 30-50 2-22 (173)
419 CHL00071 tufA elongation facto 97.4 0.00015 3.2E-09 64.7 3.5 56 201-256 12-69 (409)
420 PLN03126 Elongation factor Tu; 97.3 0.00017 3.8E-09 65.3 3.6 56 201-256 81-138 (478)
421 PRK14721 flhF flagellar biosyn 97.3 0.0014 3E-08 58.3 8.8 25 27-51 190-214 (420)
422 PRK00771 signal recognition pa 97.3 0.00031 6.6E-09 62.8 4.5 25 26-50 93-117 (437)
423 PRK00049 elongation factor Tu; 97.2 0.00035 7.6E-09 62.0 4.4 56 201-256 12-69 (396)
424 TIGR00485 EF-Tu translation el 97.2 0.00027 5.9E-09 62.7 3.6 56 201-256 12-69 (394)
425 PRK12736 elongation factor Tu; 97.2 0.0003 6.5E-09 62.5 3.7 56 201-256 12-69 (394)
426 PRK01889 GTPase RsgA; Reviewed 97.2 0.00027 5.8E-09 61.8 3.1 25 29-53 196-220 (356)
427 COG1419 FlhF Flagellar GTP-bin 97.2 0.0028 6.1E-08 55.5 9.1 26 27-52 202-227 (407)
428 PRK12724 flagellar biosynthesi 97.1 0.0031 6.8E-08 55.8 9.2 23 28-50 223-245 (432)
429 PLN03127 Elongation factor Tu; 97.1 0.00037 8E-09 62.8 3.3 55 201-256 61-118 (447)
430 KOG1534|consensus 97.1 0.0012 2.6E-08 52.5 5.6 28 30-57 5-32 (273)
431 PRK12726 flagellar biosynthesi 97.1 0.0003 6.5E-09 61.3 2.3 24 27-50 205-228 (407)
432 PRK12735 elongation factor Tu; 97.1 0.0005 1.1E-08 61.1 3.6 56 201-256 12-69 (396)
433 PRK06731 flhF flagellar biosyn 97.0 0.003 6.4E-08 53.0 7.9 25 27-51 74-98 (270)
434 cd03114 ArgK-like The function 97.0 0.0015 3.2E-08 49.8 5.2 33 94-129 91-123 (148)
435 cd02042 ParA ParA and ParB of 97.0 0.0037 8E-08 44.3 6.8 71 31-130 2-73 (104)
436 cd03116 MobB Molybdenum is an 97.0 0.002 4.3E-08 49.7 5.7 22 29-50 2-23 (159)
437 TIGR00959 ffh signal recogniti 97.0 0.0011 2.5E-08 59.1 4.9 26 26-51 97-122 (428)
438 PRK10867 signal recognition pa 97.0 0.0014 3E-08 58.6 5.3 25 26-50 98-122 (433)
439 PRK01889 GTPase RsgA; Reviewed 96.9 0.0015 3.3E-08 57.1 5.3 68 131-225 152-219 (356)
440 PF13207 AAA_17: AAA domain; P 96.9 0.0011 2.4E-08 48.3 3.5 24 30-53 1-24 (121)
441 PF13555 AAA_29: P-loop contai 96.9 0.0011 2.3E-08 42.4 2.8 21 30-50 25-45 (62)
442 PRK12727 flagellar biosynthesi 96.8 0.0047 1E-07 56.3 7.8 24 27-50 349-372 (559)
443 PRK08118 topology modulation p 96.8 0.0012 2.5E-08 51.5 3.4 26 29-54 2-27 (167)
444 COG0050 TufB GTPases - transla 96.8 0.00086 1.9E-08 56.0 2.7 56 201-256 12-69 (394)
445 PF05621 TniB: Bacterial TniB 96.8 0.013 2.7E-07 49.6 9.7 31 22-52 55-85 (302)
446 COG1136 SalX ABC-type antimicr 96.8 0.001 2.2E-08 54.0 2.7 20 30-49 33-52 (226)
447 KOG3905|consensus 96.7 0.0023 4.9E-08 54.2 4.5 38 138-175 249-286 (473)
448 PF03205 MobB: Molybdopterin g 96.7 0.0017 3.7E-08 49.0 3.5 23 29-51 1-23 (140)
449 KOG0082|consensus 96.7 0.0075 1.6E-07 52.1 7.8 39 95-133 195-233 (354)
450 PRK12723 flagellar biosynthesi 96.7 0.014 3E-07 51.5 9.7 25 27-51 173-197 (388)
451 COG0552 FtsY Signal recognitio 96.7 0.0054 1.2E-07 52.3 6.7 27 26-52 137-163 (340)
452 KOG3859|consensus 96.7 0.0018 3.9E-08 53.6 3.7 67 27-107 41-107 (406)
453 PRK14723 flhF flagellar biosyn 96.7 0.0041 8.9E-08 59.1 6.6 24 28-51 185-208 (767)
454 KOG1533|consensus 96.7 0.0049 1.1E-07 49.9 5.8 25 31-55 5-29 (290)
455 COG1126 GlnQ ABC-type polar am 96.6 0.0015 3.2E-08 52.3 2.8 21 29-49 29-49 (240)
456 PRK11537 putative GTP-binding 96.6 0.034 7.5E-07 47.9 11.4 25 27-51 3-27 (318)
457 PRK07261 topology modulation p 96.6 0.0019 4E-08 50.5 3.3 23 30-52 2-24 (171)
458 PRK05703 flhF flagellar biosyn 96.6 0.0051 1.1E-07 55.1 6.2 23 28-50 221-243 (424)
459 TIGR00235 udk uridine kinase. 96.6 0.0026 5.7E-08 51.2 4.0 26 26-51 4-29 (207)
460 PF13671 AAA_33: AAA domain; P 96.6 0.0024 5.2E-08 47.9 3.5 23 31-53 2-24 (143)
461 COG1116 TauB ABC-type nitrate/ 96.6 0.0016 3.4E-08 53.3 2.5 21 30-50 31-51 (248)
462 cd02019 NK Nucleoside/nucleoti 96.6 0.0025 5.5E-08 41.7 3.1 21 31-51 2-22 (69)
463 KOG0460|consensus 96.5 0.0024 5.1E-08 54.4 3.2 55 201-255 54-110 (449)
464 COG0563 Adk Adenylate kinase a 96.5 0.0028 6.1E-08 49.8 3.4 26 29-54 1-26 (178)
465 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.014 3E-07 40.1 6.7 69 31-131 2-71 (99)
466 KOG4181|consensus 96.4 0.016 3.4E-07 49.6 7.8 23 28-50 188-210 (491)
467 PRK05480 uridine/cytidine kina 96.4 0.0034 7.5E-08 50.5 3.6 26 26-51 4-29 (209)
468 COG3840 ThiQ ABC-type thiamine 96.4 0.0029 6.4E-08 49.4 2.9 22 29-50 26-47 (231)
469 COG1161 Predicted GTPases [Gen 96.4 0.0042 9.2E-08 53.6 4.2 130 97-238 12-169 (322)
470 COG2895 CysN GTPases - Sulfate 96.4 0.003 6.6E-08 54.0 3.2 56 202-257 7-81 (431)
471 cd03238 ABC_UvrA The excision 96.4 0.0035 7.5E-08 49.2 3.3 23 29-51 22-44 (176)
472 PF00005 ABC_tran: ABC transpo 96.3 0.0027 5.9E-08 47.3 2.6 21 30-50 13-33 (137)
473 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0041 8.9E-08 49.0 3.7 27 27-53 2-28 (188)
474 cd00071 GMPK Guanosine monopho 96.3 0.0033 7.2E-08 47.2 2.9 21 31-51 2-22 (137)
475 KOG3887|consensus 96.3 0.0045 9.8E-08 50.3 3.7 83 29-130 28-113 (347)
476 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0036 7.8E-08 44.7 2.7 21 29-49 16-36 (107)
477 PRK06217 hypothetical protein; 96.3 0.0045 9.8E-08 48.8 3.5 25 29-53 2-26 (183)
478 cd01130 VirB11-like_ATPase Typ 96.2 0.0039 8.5E-08 49.3 3.1 24 28-51 25-48 (186)
479 PTZ00327 eukaryotic translatio 96.2 0.003 6.5E-08 57.1 2.5 45 201-256 34-78 (460)
480 PF13238 AAA_18: AAA domain; P 96.2 0.0054 1.2E-07 44.9 3.3 21 31-51 1-21 (129)
481 PRK14737 gmk guanylate kinase; 96.2 0.0054 1.2E-07 48.6 3.5 26 27-52 3-28 (186)
482 PRK14495 putative molybdopteri 96.2 0.015 3.3E-07 51.7 6.5 22 29-50 2-23 (452)
483 PF13521 AAA_28: AAA domain; P 96.1 0.003 6.4E-08 48.8 1.9 22 30-51 1-22 (163)
484 TIGR02322 phosphon_PhnN phosph 96.1 0.005 1.1E-07 48.2 3.2 23 30-52 3-25 (179)
485 COG1763 MobB Molybdopterin-gua 96.1 0.0059 1.3E-07 47.0 3.3 23 28-50 2-24 (161)
486 KOG0447|consensus 96.1 0.027 5.9E-07 51.1 7.8 99 26-127 306-457 (980)
487 PRK13949 shikimate kinase; Pro 96.1 0.0061 1.3E-07 47.5 3.4 26 29-54 2-27 (169)
488 PRK14530 adenylate kinase; Pro 96.1 0.0057 1.2E-07 49.5 3.4 26 29-54 4-29 (215)
489 PRK14738 gmk guanylate kinase; 96.1 0.0059 1.3E-07 49.2 3.4 24 27-50 12-35 (206)
490 PRK08233 hypothetical protein; 96.1 0.006 1.3E-07 47.7 3.4 24 29-52 4-27 (182)
491 COG0541 Ffh Signal recognition 96.1 0.039 8.5E-07 48.8 8.5 27 25-51 97-123 (451)
492 PRK10078 ribose 1,5-bisphospho 96.1 0.005 1.1E-07 48.7 2.9 22 30-51 4-25 (186)
493 smart00382 AAA ATPases associa 96.1 0.0057 1.2E-07 44.9 3.0 24 29-52 3-26 (148)
494 KOG0459|consensus 96.0 0.0016 3.5E-08 56.5 -0.0 59 199-257 77-152 (501)
495 COG3638 ABC-type phosphate/pho 96.0 0.0047 1E-07 50.1 2.6 21 30-50 32-52 (258)
496 COG3839 MalK ABC-type sugar tr 96.0 0.0051 1.1E-07 53.0 2.9 20 31-50 32-51 (338)
497 cd02023 UMPK Uridine monophosp 96.0 0.0055 1.2E-07 48.9 3.0 21 31-51 2-22 (198)
498 cd02036 MinD Bacterial cell di 96.0 0.028 6.1E-07 43.7 6.9 33 96-130 64-96 (179)
499 PF13191 AAA_16: AAA ATPase do 96.0 0.0065 1.4E-07 47.5 3.2 25 26-50 22-46 (185)
500 PLN02459 probable adenylate ki 96.0 0.01 2.2E-07 49.4 4.4 43 12-54 13-55 (261)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.9e-30 Score=217.50 Aligned_cols=193 Identities=23% Similarity=0.328 Sum_probs=158.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
....+++++||+++|||||+++|++..|.+... .++|++|..++||++|+|++.....++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 456789999999999999999999999998764 578999999999999999999998888776
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++++|||||.+|.++++.++++||++||||||.. ||..
T Consensus 85 ------~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v 158 (428)
T COG5256 85 ------YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLV 158 (428)
T ss_pred ------ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccc
Confidence 889999999999999999999999999999999998 8888
Q ss_pred CCC---HHHHHHHHHH---HhCCC--ccceEEecccccccccccccccCCCcccCCC---------CCCCCCCCCCCCcc
Q psy12244 135 NAN---PEACEEQLQT---LFNID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDGL---------AKPDSKATPYEDIP 197 (257)
Q Consensus 135 ~~~---~~~~~~~~~~---~~~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~---------~~~~~~~~~~~~~~ 197 (257)
+++ ++++..++.. .+|+. ..+|+|+||..|+|+.+.- ...+||++. ..|.+....+..+|
T Consensus 159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s---~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~p 235 (428)
T COG5256 159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS---ENMPWYKGPTLLEALDQLEPPERPLDKPLRLP 235 (428)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC---cCCcCccCChHHHHHhccCCCCCCCCCCeEeE
Confidence 776 4455555544 33665 3679999999999998766 366899873 24555566667788
Q ss_pred hhhhc-----ceeeEeeecccchhhHHHHHHhhCC
Q psy12244 198 IARIR-----NFSIIAHVDHGKSTLADRLLEMTGT 227 (257)
Q Consensus 198 ~~~~~-----~~~~~G~v~~Gk~~~~~~i~~~~g~ 227 (257)
+.+.. +.+.+|++.+|....++.+...++.
T Consensus 236 I~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~ 270 (428)
T COG5256 236 IQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG 270 (428)
T ss_pred eeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc
Confidence 77654 4556788999988888887766653
No 2
>KOG0462|consensus
Probab=99.96 E-value=9.3e-30 Score=221.12 Aligned_cols=197 Identities=48% Similarity=0.715 Sum_probs=169.7
Q ss_pred CCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 19 ~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
++...|.++.+|++|+-|+++|||||..+|+..++.+... ...+++|.+..|+++|+|+..+++.+.|+. +..+.+
T Consensus 51 ~~~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~---~~~ylL 127 (650)
T KOG0462|consen 51 EFSLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD---GQSYLL 127 (650)
T ss_pred ccccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---CCceEE
Confidence 5667788999999999999999999999999999987765 567789999999999999999999999985 677999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++||||||.||..+..+.+..+|++||||||+. +|++.++.+++..++.+.|+.
T Consensus 128 NLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 128 NLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred EeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998 999999999999999999999
Q ss_pred CccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHHHH
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
+..+++.+|||+|.|+++++++|. +.+|+|......++++- -+..++....+.+-.|...-++.+..
T Consensus 208 ~~~~~i~vSAK~G~~v~~lL~AII-----~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~ 279 (650)
T KOG0462|consen 208 PPAEVIYVSAKTGLNVEELLEAII-----RRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQS 279 (650)
T ss_pred CccceEEEEeccCccHHHHHHHHH-----hhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEE
Confidence 988999999999999999998887 34455554444443332 24457788888888887777776643
No 3
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.4e-27 Score=204.64 Aligned_cols=195 Identities=42% Similarity=0.677 Sum_probs=159.8
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
..++.++++|..|+.|.++|||||..+|+..++.+... ...+++|....|++||+|++.+...+.|+.- +++.|.++|
T Consensus 2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~-~g~~Y~lnl 80 (603)
T COG0481 2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAK-DGETYVLNL 80 (603)
T ss_pred CccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeC-CCCEEEEEE
Confidence 35667889999999999999999999999999988766 5677899999999999999999999998752 568899999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
||||||.||..+..+++..|.+++|||||+. +|++.++.+++.+++.+.+|.+.
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999998 99999999999999999999998
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCC-c-c---hhhhcceeeEeeecccchhhHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYED-I-P---IARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
...+.+|||+|.||+++++.|.. .+|.|......+.. + . -+.-++++..=++-.|....++.+
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~-----~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki 228 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVE-----KIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKI 228 (603)
T ss_pred chheeEecccCCCHHHHHHHHHh-----hCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEE
Confidence 88999999999999999998873 33334333222211 1 1 122356655555555655555554
No 4
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.5e-27 Score=193.79 Aligned_cols=150 Identities=23% Similarity=0.319 Sum_probs=124.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEEEe
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASLRY 86 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 86 (257)
..+.+++.||+++-|||||+++|++.+..+... +++...|.++.|+++|+|++..+..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 346789999999999999999999887776433 6778899999999999999998888876
Q ss_pred ecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCH-
Q psy12244 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANP- 138 (257)
Q Consensus 87 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~- 138 (257)
.. .+|.+.|||||+.|.++|..+++.||++|++|||.. ||+.+++.
T Consensus 84 ~K------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 84 EK------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cc------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHH
Confidence 65 899999999999999999999999999999999998 99988763
Q ss_pred --HHHHHH---HHHHhCCCccceEEecccccccccccccccCCCcccCCCC
Q psy12244 139 --EACEEQ---LQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLA 184 (257)
Q Consensus 139 --~~~~~~---~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~ 184 (257)
+++.++ +.+.++.....++|+||..|+|+..-.+ .+|||++..
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~---~mpWY~Gpt 205 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSE---NMPWYKGPT 205 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccccccc---CCCcccCcc
Confidence 333333 3333466666799999999999977543 567999843
No 5
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.94 E-value=2.5e-26 Score=204.66 Aligned_cols=192 Identities=26% Similarity=0.409 Sum_probs=149.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
.+..+|+++||+|+|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.++.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 457899999999999999999999988877532 356789999999999999999888887766
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN-- 137 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~-- 137 (257)
+.++|||||||++|..++..+++.+|++++|+|+++ +|+...+
T Consensus 84 ------~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 84 ------YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEK 157 (425)
T ss_pred ------eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHH
Confidence 899999999999999999999999999999999974 6765432
Q ss_pred -HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcchhhh-
Q psy12244 138 -PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPIARI- 201 (257)
Q Consensus 138 -~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~- 201 (257)
++...+++.+++ ++. ..+++++||++|+|++++.+. ++||++ ++.|.+....+..+++++.
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~---~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~ 234 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSEN---MPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVY 234 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccC---CCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEE
Confidence 233444555443 432 357999999999999988764 457764 2334444445556776654
Q ss_pred ----cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 ----RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 ----~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
.+.++.|++.+|....++.+...++
T Consensus 235 ~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~ 263 (425)
T PRK12317 235 SISGVGTVPVGRVETGVLKVGDKVVFMPA 263 (425)
T ss_pred eeCCCeEEEEEEEeeccEecCCEEEECCC
Confidence 3557789999999999988876653
No 6
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=200.10 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=147.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
+.|+|+|++|+|||||+|+|+++..++... .+|+|.+..+...+|.+ ..|.+|||+|.++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D-------------~pGvTRDr~y~~~~~~~------~~f~lIDTgGl~~~ 64 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD-------------TPGVTRDRIYGDAEWLG------REFILIDTGGLDDG 64 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec-------------CCCCccCCccceeEEcC------ceEEEEECCCCCcC
Confidence 579999999999999999999988877654 78999999999999988 7899999999874
Q ss_pred --------cHHHHHHhhhhcceEEEEEecCc-----------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 108 --------FSNEVTRSLAACQGVVLLIDANQ-----------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 108 --------~~~~~~~~~~~aD~~ilVvd~~~-----------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
...++..++..||++|||||+.. +++.+. ....+...+++++...++
T Consensus 65 ~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~--~~~e~~~~efyslG~g~~ 142 (444)
T COG1160 65 DEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDN--LKAEELAYEFYSLGFGEP 142 (444)
T ss_pred CchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccC--chhhhhHHHHHhcCCCCc
Confidence 33456678899999999999998 233222 133444555555555578
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCccc
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV 236 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~~ 236 (257)
++|||.+|.|+.+|.+.+.... +.+...... . ..+...++++|+++.||+++.++|+...+.+...-++++
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l-----~~~e~~~~~-~---~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTT 213 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELL-----PPDEEEEEE-E---ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTT 213 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhc-----CCccccccc-c---cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCcc
Confidence 9999999999999999887431 101100000 0 023467999999999999999999999999998888999
Q ss_pred cCChhhHhhhC
Q psy12244 237 LDSLQVEQERG 247 (257)
Q Consensus 237 ~d~~~~e~~rg 247 (257)
.|.+..+.+++
T Consensus 214 RD~I~~~~e~~ 224 (444)
T COG1160 214 RDSIDIEFERD 224 (444)
T ss_pred ccceeeeEEEC
Confidence 99999888754
No 7
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.93 E-value=5.4e-26 Score=202.26 Aligned_cols=191 Identities=23% Similarity=0.307 Sum_probs=149.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
.+..||+++||+++|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.+..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 456889999999999999999999988765432 236789999999999999998877777665
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|+|||||++|..++..+++.+|++|+|+|+.. ||+.
T Consensus 85 ------~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 ------YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred ------EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 899999999999999999999999999999999973 7765
Q ss_pred C-----CCHHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCC
Q psy12244 135 N-----ANPEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYED 195 (257)
Q Consensus 135 ~-----~~~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~ 195 (257)
. .+++++.++++.++ ++. ..+++|+||++|+|+.+..+. ++||++ ++.|.+....+..
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~---~~Wy~g~tLl~~l~~i~~p~~~~~~plr 235 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTN---LDWYKGPTLLEALDQINEPKRPSDKPLR 235 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccC---CcccchHHHHHHHhhcCCCccccCCCcE
Confidence 2 23556677777665 432 367999999999999765443 457654 3344444455667
Q ss_pred cchhhhc-----ceeeEeeecccchhhHHHHHHhh
Q psy12244 196 IPIARIR-----NFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 196 ~~~~~~~-----~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++++.. +.++.|++.+|....++.+...+
T Consensus 236 ~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P 270 (447)
T PLN00043 236 LPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGP 270 (447)
T ss_pred EEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcC
Confidence 7776643 45678999999988888876655
No 8
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.93 E-value=8.6e-26 Score=201.09 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=150.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
.+..||+++||+++|||||+++|++..+.+... ++++++|..++|+++|+|++.....+.++.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456799999999999999999999988776532 345789999999999999999887777766
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|+|||||.+|..++..++..+|++++|||+.. ||..
T Consensus 85 ------~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 85 ------YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDK 158 (446)
T ss_pred ------eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 899999999999999999999999999999999963 7742
Q ss_pred C-----CCHHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCC
Q psy12244 135 N-----ANPEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYED 195 (257)
Q Consensus 135 ~-----~~~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~ 195 (257)
. .+++++.++++..+ ++. ..|+||+||++|+|+.+..+ .++||++ ++.|.+....+..
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~---~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r 235 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSD---NMPWYKGPTLLEALDTLEPPKRPVDKPLR 235 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCC---CCcccchHHHHHHHhCCCCCCcCCCCCeE
Confidence 2 33667777777765 342 46899999999999986543 3457655 2234444445566
Q ss_pred cchhhhc-----ceeeEeeecccchhhHHHHHHhhC
Q psy12244 196 IPIARIR-----NFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 196 ~~~~~~~-----~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
+++++.. +.++.|++.+|....++.+...+.
T Consensus 236 ~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~ 271 (446)
T PTZ00141 236 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPS 271 (446)
T ss_pred EEEEEEEecCCceEEEEEEEEcceEecCCEEEEccC
Confidence 7776643 456789999999999988877664
No 9
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.93 E-value=1.1e-25 Score=198.74 Aligned_cols=189 Identities=20% Similarity=0.301 Sum_probs=144.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEEEeecc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASLRYTSI 89 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 89 (257)
.+|+++||+|+|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 369999999999999999999988877541 235789999999999999999888887766
Q ss_pred cCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCH---H
Q psy12244 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANP---E 139 (257)
Q Consensus 90 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~---~ 139 (257)
.+++|||||||++|..++..++..+|++++|+|+.. +|+..++. +
T Consensus 80 -----~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~ 154 (406)
T TIGR02034 80 -----RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFE 154 (406)
T ss_pred -----eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHH
Confidence 789999999999999999999999999999999975 77754332 2
Q ss_pred HHHHHHHHH---hCCCccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcchhhhc-----
Q psy12244 140 ACEEQLQTL---FNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPIARIR----- 202 (257)
Q Consensus 140 ~~~~~~~~~---~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~----- 202 (257)
+..+++..+ +++...+++|+||++|+|++++.+. ++||++ ++.+.+....+..+++.+..
T Consensus 155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~---~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~ 231 (406)
T TIGR02034 155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSES---MPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLD 231 (406)
T ss_pred HHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccC---CCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCC
Confidence 334444433 3555568999999999999987653 357654 22333334445567665432
Q ss_pred ceeeEeeecccchhhHHHHHHhhC
Q psy12244 203 NFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 203 ~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
...+.|++.+|....++.+...++
T Consensus 232 ~~g~~G~v~~G~l~~gd~v~i~P~ 255 (406)
T TIGR02034 232 FRGYAGTIASGSVHVGDEVVVLPS 255 (406)
T ss_pred cEEEEEEEecceeecCCEEEEeCC
Confidence 123579999999999988876553
No 10
>KOG0458|consensus
Probab=99.93 E-value=9e-26 Score=198.01 Aligned_cols=198 Identities=25% Similarity=0.336 Sum_probs=156.4
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLR 85 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~ 85 (257)
.+.....+++++||+++|||||+++|++..+.+... .++|++|...+||++|+|++.....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 334467789999999999999999999999888655 689999999999999999999998887
Q ss_pred eecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------c
Q psy12244 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------V 131 (257)
Q Consensus 86 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~ 131 (257)
-+. +.++|+|+|||.+|..+++.++..||+++||||++. |
T Consensus 252 s~~------~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKm 325 (603)
T KOG0458|consen 252 SKS------KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKM 325 (603)
T ss_pred cCc------eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecc
Confidence 554 899999999999999999999999999999999998 7
Q ss_pred CCCCCC---HHHHHHHHHHHh----CCCc--cceEEecccccccccccccccCCCcccCCCC---------CCCCCCCCC
Q psy12244 132 DLKNAN---PEACEEQLQTLF----NIDK--KSVLRIWHRRCFSCADCHRSLDSTNLNDGLA---------KPDSKATPY 193 (257)
Q Consensus 132 D~~~~~---~~~~~~~~~~~~----~~~~--~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~---------~~~~~~~~~ 193 (257)
|+.+++ ++++...+..+| |+.. ..|+|||+.+|+|+...-+.=....||++.+ .|.+....+
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kP 405 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKP 405 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCC
Confidence 887765 566666666665 4433 3699999999999977643323446888753 333334445
Q ss_pred CCcchhhh-----cceeeEeeecccchhhHHHHHHhhC
Q psy12244 194 EDIPIARI-----RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 194 ~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
..+++.+. .++.+.|.+++|....++.+...++
T Consensus 406 l~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s 443 (603)
T KOG0458|consen 406 LRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTS 443 (603)
T ss_pred eEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecC
Confidence 55555443 3467889999998888777755443
No 11
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.93 E-value=1.3e-25 Score=201.43 Aligned_cols=192 Identities=22% Similarity=0.278 Sum_probs=145.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEEEe
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASLRY 86 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 86 (257)
....+|+++||+|+|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 456799999999999999999999988877541 2457899999999999999988877776
Q ss_pred ecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--
Q psy12244 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN-- 137 (257)
Q Consensus 87 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~-- 137 (257)
+. ++++|||||||.+|..++..++..+|++++|+|+.. +|+..++
T Consensus 105 ~~------~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 105 EK------RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred CC------cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhH
Confidence 55 789999999999999999999999999999999975 7775433
Q ss_pred -HHHHHHHHHHHh---C-CCccceEEecccccccccccccccCCCcccCCC---------CCCCCCCCCCCCcchhhhcc
Q psy12244 138 -PEACEEQLQTLF---N-IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGL---------AKPDSKATPYEDIPIARIRN 203 (257)
Q Consensus 138 -~~~~~~~~~~~~---~-~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 203 (257)
..+..+++..++ + ....+++|+||++|+|++++.+. ++||++. +.+.+....+..+++++...
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~---~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~ 255 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSES---MPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNR 255 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccccc---ccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEe
Confidence 233444444432 2 33578999999999999987653 4677652 23333344455676654321
Q ss_pred -----eeeEeeecccchhhHHHHHHhhC
Q psy12244 204 -----FSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 204 -----~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
..+.|++.+|....++.+...+.
T Consensus 256 ~~~~~~g~~G~V~sG~l~~Gd~v~i~P~ 283 (474)
T PRK05124 256 PNLDFRGYAGTLASGVVKVGDRVKVLPS 283 (474)
T ss_pred cCCcccceEEEEEeEEEecCCEEEEecC
Confidence 13569999999999888866554
No 12
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.93 E-value=2.7e-25 Score=203.97 Aligned_cols=194 Identities=42% Similarity=0.688 Sum_probs=152.7
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
+.++++||+|+||.++|||||+++|++.++.+... ...+++|..+.|+++|+|+......+.|... ++..+.++||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~-dg~~~~lnLiDT 81 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK-DGETYILNLIDT 81 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc-CCCcEEEEEEEC
Confidence 34678999999999999999999999988877654 3567899999999999999988888887631 455689999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
|||.+|...+..+++.+|++|+|+|++. +|+..++.+...+++++.++....++
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~v 161 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDA 161 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceE
Confidence 9999999999999999999999999986 78776666666777777777655568
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHHHH
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
+++||++|.|+++|+++|... ++.|......+.... .+..++.+..|++.+|....++.+..
T Consensus 162 i~iSAktG~GI~~Ll~~I~~~-----lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~ 228 (600)
T PRK05433 162 VLVSAKTGIGIEEVLEAIVER-----IPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKM 228 (600)
T ss_pred EEEecCCCCCHHHHHHHHHHh-----CccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEE
Confidence 999999999999999988632 222332222222221 23346777889999998888887744
No 13
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.92 E-value=5.8e-25 Score=201.66 Aligned_cols=192 Identities=43% Similarity=0.669 Sum_probs=150.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+++||+|+||+|+|||||+++|++..+.+... ...+.+|..+.|+++|+|+......+.|.. .++..+.++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~-~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA-KDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc-CCCCEEEEEEEECCCc
Confidence 57899999999999999999999988877653 456778999999999999998887777752 1345589999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
.+|...+..+++.+|++|+|+|+++ +|+...+.++..+++++.++....+++++
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v 160 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA 160 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence 9999999999999999999999986 78766666666677877777655568999
Q ss_pred cccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 160 WHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
||++|.|+++|+++|.. .++.|......+.... .+..++.+..|++.+|....++.+...
T Consensus 161 SAktG~GI~~Lle~I~~-----~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~ 225 (595)
T TIGR01393 161 SAKTGIGIEEILEAIVK-----RVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFM 225 (595)
T ss_pred eccCCCCHHHHHHHHHH-----hCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEe
Confidence 99999999999998863 2233333222222222 233467778889999988888877543
No 14
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.92 E-value=4.7e-25 Score=196.43 Aligned_cols=192 Identities=24% Similarity=0.353 Sum_probs=147.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
....+|+++||+|+|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.+..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 456899999999999999999999887766431 346889999999999999999888777665
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC-
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN- 137 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~- 137 (257)
+.++|||||||++|...+..++..+|++++|+|+++ +|+.+.+
T Consensus 85 ------~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 85 ------YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred ------eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 799999999999999999999999999999999975 7775433
Q ss_pred --HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcchhhh
Q psy12244 138 --PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPIARI 201 (257)
Q Consensus 138 --~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 201 (257)
.++..+++++++ ++. ..+++++||++|.|++++... ++||++ ++.+.+....+..+++++.
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~---~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v 235 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSEN---TPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDV 235 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccC---CccccchHHHHHHhcCCCCCCccCCCcEEEEEEE
Confidence 233344555444 332 357999999999999987654 467765 2233333444556776654
Q ss_pred -----cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 -----RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 -----~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
.+.++.|++.+|....++.+...+.
T Consensus 236 ~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~ 265 (426)
T TIGR00483 236 YSITGVGTVPVGRVETGVLKPGDKVVFEPA 265 (426)
T ss_pred EecCCCeEEEEEEEccceeecCCEEEECCC
Confidence 3456789999999998888766554
No 15
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=4.5e-25 Score=175.84 Aligned_cols=143 Identities=33% Similarity=0.438 Sum_probs=119.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEE--eecccCCccEEEEEe
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLR--YTSILDGEEYLLNLI 100 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~~~~~~~~~li 100 (257)
+.++|+++|++++|||||+++|++..+..... ......+..+.|+++++|++.....+. +.. +.++|+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~------~~i~~i 75 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN------RKITLI 75 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS------EEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc------cceeec
Confidence 57899999999999999999999988765443 113357888999999999998888877 555 899999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh----C
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF----N 150 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~----~ 150 (257)
|||||.+|..++..+++.+|++|+|||+.. +|+.+.++++..+++.+.+ +
T Consensus 76 DtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 76 DTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp EESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999997 8887555666666666333 3
Q ss_pred CC---ccceEEecccccccccccccccC
Q psy12244 151 ID---KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 ~~---~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.. ..|++++||++|.|+++|++.|.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHH
Confidence 33 36899999999999999988776
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.91 E-value=4.1e-24 Score=195.64 Aligned_cols=186 Identities=33% Similarity=0.533 Sum_probs=144.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++||+|+||+++|||||+++|++..+.+... -..+++|..+.|+++|+|+......+.|.+ ++++|||||||
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~------~kinlIDTPGh 74 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG------TKINIVDTPGH 74 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC------EEEEEEECCCH
Confidence 4799999999999999999999988776544 134689999999999999999888899877 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC---CC----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN---ID---- 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~---~~---- 152 (257)
.+|...+..+++.+|++++|||+.. +|+..++.+++.+++.+.+. ..
T Consensus 75 ~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l 154 (594)
T TIGR01394 75 ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQL 154 (594)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999986 88877777777777776652 11
Q ss_pred ccceEEecccccc----------cccccccccCCCcccCCCCCCCCCCCCCCCcch-----hhhcceeeEeeecccchhh
Q psy12244 153 KKSVLRIWHRRCF----------SCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI-----ARIRNFSIIAHVDHGKSTL 217 (257)
Q Consensus 153 ~~~~i~iSa~~g~----------gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~G~v~~Gk~~~ 217 (257)
..|++++||++|. |++.|++.|.. .++.|......+..+.+ ....+....|++.+|....
T Consensus 155 ~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~-----~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~ 229 (594)
T TIGR01394 155 DFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVR-----HVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKK 229 (594)
T ss_pred cCcEEechhhcCcccccCcccccCHHHHHHHHHH-----hCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEcc
Confidence 3579999999996 67777766652 23333322233333333 2345667789999998888
Q ss_pred HHHHHHh
Q psy12244 218 ADRLLEM 224 (257)
Q Consensus 218 ~~~i~~~ 224 (257)
++.+...
T Consensus 230 G~~V~~~ 236 (594)
T TIGR01394 230 GQQVALM 236 (594)
T ss_pred CCEEEEe
Confidence 8877443
No 17
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=198.33 Aligned_cols=194 Identities=18% Similarity=0.275 Sum_probs=146.1
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEE
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASL 84 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~ 84 (257)
+.....+|+++||+|+|||||+++|++..+.+... .+++.+|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 34456689999999999999999999988877521 24578999999999999999988888
Q ss_pred EeecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC
Q psy12244 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN 137 (257)
Q Consensus 85 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~ 137 (257)
.++. .+++|+|||||++|..++..++..+|+++||+|+.. +|+.+.+
T Consensus 100 ~~~~------~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 100 ATPK------RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ccCC------ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccch
Confidence 7766 789999999999999999999999999999999965 7775433
Q ss_pred ---HHHHHHHHHH---HhCCCccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcchhhhc
Q psy12244 138 ---PEACEEQLQT---LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPIARIR 202 (257)
Q Consensus 138 ---~~~~~~~~~~---~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 202 (257)
.++..+++.+ .+++...+++|+||++|.|++++.+. .+||++ ++.+.+....+..+++.+..
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~---~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~ 250 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSAR---MPWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVN 250 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccC---CCcccHhHHHHHHhcCCCCCCcCCCCceeeEEEEE
Confidence 2334444443 23555567999999999999976543 356654 22333333445567666431
Q ss_pred ----c-eeeEeeecccchhhHHHHHHhhC
Q psy12244 203 ----N-FSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 203 ----~-~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
. ..+.|++.+|....++.+...+.
T Consensus 251 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~ 279 (632)
T PRK05506 251 RPNLDFRGFAGTVASGVVRPGDEVVVLPS 279 (632)
T ss_pred ecCCCceEEEEEEecceeecCCEEEEcCC
Confidence 1 23569999999999988866553
No 18
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.91 E-value=1.5e-23 Score=169.54 Aligned_cols=144 Identities=24% Similarity=0.343 Sum_probs=116.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeecccCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDG 92 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 92 (257)
+|+|+|++|+|||||+++|++..+.+... +..+.+|..+.|+++|+|++.....+.+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK---- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC----
Confidence 58999999999999999999988887621 356789999999999999999888887766
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCH---HHHH
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANP---EACE 142 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~---~~~~ 142 (257)
..++|||||||.+|...+..++..+|++|+|+|++. +|+...+. ....
T Consensus 77 --~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 77 --RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred --ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHH
Confidence 789999999999999888999999999999999986 67654322 2333
Q ss_pred HHHHH---HhCCCccceEEecccccccccccccccCCCcccCC
Q psy12244 143 EQLQT---LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG 182 (257)
Q Consensus 143 ~~~~~---~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~ 182 (257)
+++++ .++....+++++||++|.|+++... ..+||++
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~---~~~w~~g 194 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSRSE---NMPWYSG 194 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccCCC---CCCCCCC
Confidence 34433 3455456799999999999998763 4579876
No 19
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=3.2e-23 Score=163.52 Aligned_cols=147 Identities=56% Similarity=0.873 Sum_probs=117.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+||+++|++++|||||+++|++..+.+... ...+..+..+.++.+|+|.......+.|... ++....++||||||+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-DGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-CCCcEEEEEEECCCChh
Confidence 589999999999999999999877665443 3345667778888899998877666665321 34557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEecc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
|...+..+++.+|++|+|+|+++ +|+.+.+..+..+++++.++....+++++||
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSA 159 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeec
Confidence 99999999999999999999976 7775544455556677766665446899999
Q ss_pred cccccccccccccCC
Q psy12244 162 RRCFSCADCHRSLDS 176 (257)
Q Consensus 162 ~~g~gi~~l~~~i~~ 176 (257)
++|.|+++++++|..
T Consensus 160 ~~g~gi~~l~~~l~~ 174 (179)
T cd01890 160 KTGLGVEDLLEAIVE 174 (179)
T ss_pred cCCCCHHHHHHHHHh
Confidence 999999999998873
No 20
>PLN03126 Elongation factor Tu; Provisional
Probab=99.90 E-value=2.2e-23 Score=186.35 Aligned_cols=194 Identities=19% Similarity=0.274 Sum_probs=140.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....+|+++||+|+|||||+++|++..+.+... .....+|..++|+++|+|++.....+.++. ..++|||||
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~------~~i~liDtP 152 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN------RHYAHVDCP 152 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC------cEEEEEECC
Confidence 457899999999999999999999877766543 233568999999999999998777776655 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||++|..++..++..+|++++|+|+.. +|+.... .+...+++.+++ ++
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999986 7775421 233444555554 33
Q ss_pred C--ccceEEeccccccccccccccc--CCCcccCC-----------CCCCCCCCCCCCCcchhhh-----cceeeEeeec
Q psy12244 152 D--KKSVLRIWHRRCFSCADCHRSL--DSTNLNDG-----------LAKPDSKATPYEDIPIARI-----RNFSIIAHVD 211 (257)
Q Consensus 152 ~--~~~~i~iSa~~g~gi~~l~~~i--~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~ 211 (257)
+ ..|++++||.+|.|+-.-...+ ...+||+. .+.|.+....+..+++++. ++.++.|++.
T Consensus 233 ~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~ 312 (478)
T PLN03126 233 PGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 312 (478)
T ss_pred CcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEE
Confidence 3 5689999999997652100000 00134331 1234444445566777664 3566789999
Q ss_pred ccchhhHHHHHHhh
Q psy12244 212 HGKSTLADRLLEMT 225 (257)
Q Consensus 212 ~Gk~~~~~~i~~~~ 225 (257)
+|....++.+...+
T Consensus 313 sG~i~~Gd~v~i~p 326 (478)
T PLN03126 313 RGTVKVGETVDIVG 326 (478)
T ss_pred cCeEecCCEEEEec
Confidence 99999998886654
No 21
>PRK12736 elongation factor Tu; Reviewed
Probab=99.90 E-value=1.9e-23 Score=184.10 Aligned_cols=189 Identities=22% Similarity=0.361 Sum_probs=134.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
.+..+|+++||+|+|||||+++|++........ ...+.+|..++|+++|+|++.....+.... ..++|||||
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~------~~i~~iDtP 83 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEK------RHYAHVDCP 83 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCC------cEEEEEECC
Confidence 456899999999999999999998643322111 123468999999999999987655544333 788999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-C-HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-N-PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~-~~~~~~~~~~~~---~~ 151 (257)
||++|..++..++..+|++++|+|+.. +|+... + .+...+++.+++ ++
T Consensus 84 Gh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999986 777532 2 222334555543 33
Q ss_pred C--ccceEEecccccc--------cccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchh
Q psy12244 152 D--KKSVLRIWHRRCF--------SCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKST 216 (257)
Q Consensus 152 ~--~~~~i~iSa~~g~--------gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~ 216 (257)
. ..|++++||++|. +++.|++.|. +.++.|.+....++.+++.+. .+.++.|++.+|...
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~-----~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~ 238 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVD-----EYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVK 238 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHH-----HhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEe
Confidence 2 3689999999984 3344444443 223334444445556666654 455788999999999
Q ss_pred hHHHHHHhh
Q psy12244 217 LADRLLEMT 225 (257)
Q Consensus 217 ~~~~i~~~~ 225 (257)
.++.+...+
T Consensus 239 ~gd~v~i~p 247 (394)
T PRK12736 239 VGDEVEIVG 247 (394)
T ss_pred cCCEEEEec
Confidence 998886544
No 22
>CHL00071 tufA elongation factor Tu
Probab=99.90 E-value=2.7e-23 Score=183.93 Aligned_cols=192 Identities=19% Similarity=0.283 Sum_probs=138.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....+|+++||+|+|||||+++|++..+.+... .....+|..+.|+++|+|++.....+.++. .++.|+|||
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~------~~~~~iDtP 83 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN------RHYAHVDCP 83 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC------eEEEEEECC
Confidence 456899999999999999999999877765433 223368999999999999998776665544 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||.+|...+..++..+|++++|+|+.. +|+...+ .+...+++.+++ ++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999986 7775422 233334555554 33
Q ss_pred C--ccceEEecccccccccccccccC--CCcccCC-----------CCCCCCCCCCCCCcchhhh-----cceeeEeeec
Q psy12244 152 D--KKSVLRIWHRRCFSCADCHRSLD--STNLNDG-----------LAKPDSKATPYEDIPIARI-----RNFSIIAHVD 211 (257)
Q Consensus 152 ~--~~~~i~iSa~~g~gi~~l~~~i~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~ 211 (257)
. ..|++++||.+|.|+-+-...+. ..+||++ ++.|.+....++.+++.+. .+.++.|++.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~ 243 (409)
T CHL00071 164 PGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIE 243 (409)
T ss_pred CCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEe
Confidence 2 36899999999987643221110 1134432 2334444445556666554 3556789999
Q ss_pred ccchhhHHHHHH
Q psy12244 212 HGKSTLADRLLE 223 (257)
Q Consensus 212 ~Gk~~~~~~i~~ 223 (257)
+|....++.+..
T Consensus 244 sG~l~~Gd~v~i 255 (409)
T CHL00071 244 RGTVKVGDTVEI 255 (409)
T ss_pred cCEEeeCCEEEE
Confidence 999999988854
No 23
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.90 E-value=2.8e-23 Score=183.12 Aligned_cols=194 Identities=19% Similarity=0.333 Sum_probs=132.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
.+..+|+++||+|+|||||+++|++........ ...+.+|.+++|+++|+|++.....+.... ..++|||||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~------~~~~liDtp 83 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETEN------RHYAHVDCP 83 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCC------EEEEEEECC
Confidence 456899999999999999999997543221111 224578999999999999997655544333 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||++|..++..++..+|++++|+|+.. +|+.... .+...+++++++ ++
T Consensus 84 Gh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 84 GHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred chHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999986 7775321 222333455444 33
Q ss_pred Cc--cceEEecccccc-cccccccccCCC--cccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHH
Q psy12244 152 DK--KSVLRIWHRRCF-SCADCHRSLDST--NLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 152 ~~--~~~i~iSa~~g~-gi~~l~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i 221 (257)
.. .|++++||++|. |..++.+.+..+ .+.+.++.|.+....++.+++++. .+.++.|++.+|....++.+
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v 243 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEV 243 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEE
Confidence 22 689999999985 333222111100 011122334444445566666654 35567899999999988887
Q ss_pred HHhh
Q psy12244 222 LEMT 225 (257)
Q Consensus 222 ~~~~ 225 (257)
...+
T Consensus 244 ~i~p 247 (394)
T TIGR00485 244 EIVG 247 (394)
T ss_pred EEec
Confidence 6543
No 24
>PRK12735 elongation factor Tu; Reviewed
Probab=99.90 E-value=3.5e-23 Score=182.50 Aligned_cols=189 Identities=20% Similarity=0.346 Sum_probs=134.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
.+..+|+++||+|+|||||+++|++........ ...+.+|..++|+++|+|++.....+.+.. .+++|+|||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~------~~i~~iDtP 83 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN------RHYAHVDCP 83 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC------cEEEEEECC
Confidence 356789999999999999999998743322111 123468999999999999997665554443 688999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-C-HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-N-PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~-~~~~~~~~~~~~---~~ 151 (257)
||.+|..++..++..+|++++|+|+.. +|+... + .+...+++..++ ++
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999986 677532 1 233333454443 33
Q ss_pred C--ccceEEeccccccccc----------ccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccc
Q psy12244 152 D--KKSVLRIWHRRCFSCA----------DCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGK 214 (257)
Q Consensus 152 ~--~~~~i~iSa~~g~gi~----------~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk 214 (257)
. ..+++++||++|.|.. .|++.|. +.++.|.+....++.+++++. .+.++.|++.+|.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~-----~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~ 238 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVD-----SYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGI 238 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHH-----hcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecE
Confidence 2 3689999999997653 2222222 112334444445566676654 3567889999999
Q ss_pred hhhHHHHHHhh
Q psy12244 215 STLADRLLEMT 225 (257)
Q Consensus 215 ~~~~~~i~~~~ 225 (257)
...++.+...+
T Consensus 239 i~~gd~v~i~p 249 (396)
T PRK12735 239 VKVGDEVEIVG 249 (396)
T ss_pred EeCCCEEEEec
Confidence 99999876544
No 25
>PRK10218 GTP-binding protein; Provisional
Probab=99.89 E-value=7.2e-23 Score=187.37 Aligned_cols=187 Identities=32% Similarity=0.492 Sum_probs=144.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
++++||+|+||+++|||||+++|++..+.+... ...+++|..+.|+++|+|+......+.|++ +.+++||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~------~~inliDTP 76 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND------YRINIVDTP 76 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC------EEEEEEECC
Confidence 468999999999999999999999877766543 234789999999999999998888888876 899999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC---C---
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN---I--- 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~---~--- 151 (257)
||.+|...+..+++.+|++|+|+|+.. +|+..+++++..+++.+.+. .
T Consensus 77 G~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~ 156 (607)
T PRK10218 77 GHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDE 156 (607)
T ss_pred CcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999986 88888888888887777652 1
Q ss_pred -CccceEEeccccccc----------ccccccccCCCcccCCCCCCCCCCCCCCCcchh-----hhcceeeEeeecccch
Q psy12244 152 -DKKSVLRIWHRRCFS----------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIA-----RIRNFSIIAHVDHGKS 215 (257)
Q Consensus 152 -~~~~~i~iSa~~g~g----------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~G~v~~Gk~ 215 (257)
...|++++||++|.| +..|++.|. +.+|.|......++.+.+. ...+....|+|.+|..
T Consensus 157 ~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii-----~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~l 231 (607)
T PRK10218 157 QLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIV-----DHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKV 231 (607)
T ss_pred ccCCCEEEeEhhcCcccCCccccccchHHHHHHHH-----HhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcC
Confidence 235799999999985 444444443 2344444333333334332 2355667889999988
Q ss_pred hhHHHHHH
Q psy12244 216 TLADRLLE 223 (257)
Q Consensus 216 ~~~~~i~~ 223 (257)
..++.+..
T Consensus 232 k~Gd~v~~ 239 (607)
T PRK10218 232 KPNQQVTI 239 (607)
T ss_pred cCCCEEEE
Confidence 88877743
No 26
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.89 E-value=1.4e-23 Score=186.38 Aligned_cols=186 Identities=20% Similarity=0.241 Sum_probs=136.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEee------------cccCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT------------SILDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~------------~~~~~ 92 (257)
.+...+|+++||+++|||||+.+|+.. ..|.+++|.++|+|++.+++.+.+. ....+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~-----------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGV-----------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSS 99 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCC-----------CcccchhhHHhCCchhccccccccccCcccCCcccccccCCC
Confidence 355678999999999999999999642 3578899999999999888765310 00000
Q ss_pred ---------------ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------
Q psy12244 93 ---------------EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------- 130 (257)
Q Consensus 93 ---------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------- 130 (257)
....++|+|||||++|.+++..++..+|++++|||+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 100 KPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 02478999999999999999999999999999999975
Q ss_pred -cCCCCC-CHHHHHHHHHHHh---CCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh----
Q psy12244 131 -VDLKNA-NPEACEEQLQTLF---NIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI---- 201 (257)
Q Consensus 131 -~D~~~~-~~~~~~~~~~~~~---~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 201 (257)
+|+.+. ..++..+++++++ .....++|++||++|+|++.|++.|.. .++.|.+....++.+++++.
T Consensus 180 KiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~-----~lp~~~r~~~~p~r~~Idr~F~V~ 254 (460)
T PTZ00327 180 KIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICT-----QIPIPKRDLTSPPRMIVIRSFDVN 254 (460)
T ss_pred cccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHh-----hCCCCCCCCCCCcEEEEEEEEeec
Confidence 777532 2344455565544 124568999999999999999998883 22223333333445555531
Q ss_pred ---------cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 ---------RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 ---------~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
++.++.|++.+|....++.+...++
T Consensus 255 ~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~ 288 (460)
T PTZ00327 255 KPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPG 288 (460)
T ss_pred ccCCcccCCceEEEEEEEeeceEecCCEEEEccC
Confidence 4667889999999999998866653
No 27
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.89 E-value=6.8e-23 Score=167.03 Aligned_cols=144 Identities=26% Similarity=0.398 Sum_probs=115.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeecccCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDG 92 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 92 (257)
||+++||+++|||||+++|++..+.+... ++++++|..+.|+++|+|++.....+.+.+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~---- 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK---- 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC----
Confidence 68999999999999999999988876432 123588999999999999999998888877
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCC--
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNA-- 136 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~-- 136 (257)
+.++|||||||.+|...+..+++.+|++|+|+|+.+ +|+...
T Consensus 77 --~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~ 154 (219)
T cd01883 77 --YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNW 154 (219)
T ss_pred --eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccc
Confidence 899999999999999999999999999999999863 676521
Q ss_pred ---CHHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC
Q psy12244 137 ---NPEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG 182 (257)
Q Consensus 137 ---~~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~ 182 (257)
.+++..++++..+ +.. ..+++++||++|.|+++--+ .++||++
T Consensus 155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~---~~~w~~g 205 (219)
T cd01883 155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSE---NMPWYKG 205 (219)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCC---CCCCccC
Confidence 1344555554433 332 36799999999999996553 4569877
No 28
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=1.8e-22 Score=161.18 Aligned_cols=136 Identities=24% Similarity=0.394 Sum_probs=106.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+|+++||+|+|||||+++|++......+. ...+.+|..+.|+++|+|++.....+.+.. .+++|+|||||
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~------~~i~~iDtPG~ 75 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN------RHYAHVDCPGH 75 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC------eEEEEEECcCH
Confidence 3689999999999999999998764322211 223568999999999999998777666544 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC--
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI-- 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~-- 151 (257)
.+|...+..++..+|++++|+|+.. +|+.... .+...+++.+.+ ++
T Consensus 76 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999976 6774321 233444555554 44
Q ss_pred CccceEEecccccccccc
Q psy12244 152 DKKSVLRIWHRRCFSCAD 169 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~ 169 (257)
...|++|+||++|.|+.+
T Consensus 156 ~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 156 DNTPIVRGSALKALEGDD 173 (195)
T ss_pred cCCeEEEeeCccccCCCC
Confidence 347899999999999764
No 29
>PRK00049 elongation factor Tu; Reviewed
Probab=99.89 E-value=8.8e-23 Score=179.83 Aligned_cols=188 Identities=21% Similarity=0.350 Sum_probs=133.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....+|+++||+|+|||||+++|++........ ...+.+|..++|+++|+|++.....+.+.. .+++|+|||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~------~~i~~iDtP 83 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK------RHYAHVDCP 83 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC------eEEEEEECC
Confidence 456789999999999999999998743221111 222368999999999999998765554443 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-C-HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-N-PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~-~~~~~~~~~~~~---~~ 151 (257)
||.+|..++..++..+|++++|+|+.. +|+... . ++...+++.+++ ++
T Consensus 84 G~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999986 676532 1 223344555554 33
Q ss_pred --CccceEEecccccccc----------cccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccc
Q psy12244 152 --DKKSVLRIWHRRCFSC----------ADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGK 214 (257)
Q Consensus 152 --~~~~~i~iSa~~g~gi----------~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk 214 (257)
...|++++||++|.+- ..|++.|.. .++.|.+....++.+++++. .+.++.|++.+|.
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~-----~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~ 238 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS-----YIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGI 238 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHh-----cCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeE
Confidence 3468999999998652 233333331 12334444445566776654 4456789999999
Q ss_pred hhhHHHHHHh
Q psy12244 215 STLADRLLEM 224 (257)
Q Consensus 215 ~~~~~~i~~~ 224 (257)
...++.+...
T Consensus 239 i~~gd~v~i~ 248 (396)
T PRK00049 239 IKVGEEVEIV 248 (396)
T ss_pred EecCCEEEEe
Confidence 9988887543
No 30
>PLN03127 Elongation factor Tu; Provisional
Probab=99.89 E-value=1e-22 Score=181.26 Aligned_cols=190 Identities=21% Similarity=0.301 Sum_probs=132.8
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCc-ccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSS-QVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~-~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
...+..+|+++||+|+|||||+++|++........ ... ..+|..++|+++|+|++.....+.++. .+++|+|
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~------~~i~~iD 130 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK------RHYAHVD 130 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC------eEEEEEE
Confidence 34467899999999999999999997432111111 111 258999999999999998766665544 7899999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF--- 149 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~--- 149 (257)
||||.+|..++..++..+|++++|+|+.. +|+.+.. .+...+++++++
T Consensus 131 tPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 131 CPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred CCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999976 7775321 222233444443
Q ss_pred CCC--ccceEEeccc---cccc-------ccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecc
Q psy12244 150 NID--KKSVLRIWHR---RCFS-------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDH 212 (257)
Q Consensus 150 ~~~--~~~~i~iSa~---~g~g-------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~ 212 (257)
++. ..|++++||. +|.| +..|++.|.. .++.|.+....++.+++++. .+.++.|++.+
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~-----~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~ 285 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE-----YIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQ 285 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH-----hCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEc
Confidence 332 4688999886 4555 3445554442 23334444445566776654 45678899999
Q ss_pred cchhhHHHHHHh
Q psy12244 213 GKSTLADRLLEM 224 (257)
Q Consensus 213 Gk~~~~~~i~~~ 224 (257)
|....++.+...
T Consensus 286 G~i~~Gd~v~i~ 297 (447)
T PLN03127 286 GTIKVGEEVEIV 297 (447)
T ss_pred cEEecCCEEEEc
Confidence 999999988543
No 31
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.88 E-value=5e-23 Score=182.06 Aligned_cols=184 Identities=20% Similarity=0.289 Sum_probs=133.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEee--------------cccCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT--------------SILDG 92 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------~~~~~ 92 (257)
...+|+++|++|+|||||+++|.. ...|.+++|+++|+|++..+..+.+. ..+++
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~-----------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTG-----------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPN 71 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhC-----------eecccCHhHHHcCceeEecccccccccccccCccccccccccccc
Confidence 457899999999999999999943 13678889999999999876654421 00011
Q ss_pred ------ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-
Q psy12244 93 ------EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN- 137 (257)
Q Consensus 93 ------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~- 137 (257)
....++|||||||++|..++..++..+|++++|+|+++ +|+...+
T Consensus 72 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 72 CGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred cccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHH
Confidence 13679999999999999999999999999999999983 6665422
Q ss_pred HHHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-------------
Q psy12244 138 PEACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI------------- 201 (257)
Q Consensus 138 ~~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 201 (257)
..+..+++.+++. ....+++++||++|+|+++|+++|... ++.+.+....+..+++++.
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~-----l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~ 226 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF-----IPTPERDLDKPPLMYVARSFDVNKPGTPPEKL 226 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh-----CCCCCCCCCCCcEEEEEEEEeecCCCccccCC
Confidence 1222344444432 224679999999999999999998742 1223333334455666542
Q ss_pred cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
++.++.|++.+|....++.+...++
T Consensus 227 ~G~Vv~G~v~~G~i~~gd~v~i~P~ 251 (406)
T TIGR03680 227 KGGVIGGSLIQGKLKVGDEIEIRPG 251 (406)
T ss_pred ceeEEEEEEEeCEEeCCCEEEEccC
Confidence 3456889999999999999888765
No 32
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.88 E-value=2.1e-22 Score=185.25 Aligned_cols=174 Identities=18% Similarity=0.258 Sum_probs=132.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
.|+++|++|+|||||+++|++. ..|.+++|+++|+|++..+..+.... ...++|||||||++|.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-----------~~dr~~eE~~rGiTI~l~~~~~~~~~-----g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-----------NADRLPEEKKRGMTIDLGYAYWPQPD-----GRVLGFIDVPGHEKFL 65 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----------CCccchhcccCCceEEeeeEEEecCC-----CcEEEEEECCCHHHHH
Confidence 5899999999999999999542 24777888999999998776654421 2568999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-CHHHHHHHHHHHh---CCCccceEE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-NPEACEEQLQTLF---NIDKKSVLR 158 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~~~~~~~~~~~~~---~~~~~~~i~ 158 (257)
.++..++..+|++++|+|++. +|+.+. ..+...+++++.+ ++...++|+
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~ 145 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFV 145 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 999999999999999999986 677542 2344555666554 344568999
Q ss_pred ecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHHHHhh
Q psy12244 159 IWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+||++|.|+++|++.|...+. +......+..+++++. .+.++.|++.+|....++.+...+
T Consensus 146 VSA~tG~gI~~L~~~L~~~~~------~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p 211 (614)
T PRK10512 146 TAATEGRGIDALREHLLQLPE------REHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTG 211 (614)
T ss_pred EeCCCCCCCHHHHHHHHHhhc------cccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcC
Confidence 999999999999999985431 1111233455666653 456788999999999998886544
No 33
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=1.6e-22 Score=185.47 Aligned_cols=176 Identities=21% Similarity=0.303 Sum_probs=133.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|++.. .|.+++|..+|+|++..+..+.+.+ ..++|||||||++|.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~-----------~d~~~eE~~rGiTid~~~~~~~~~~------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA-----------ADRLPEEKKRGMTIDLGFAYFPLPD------YRLGFIDVPGHEKFI 64 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc-----------CcCChhHhcCCceEEeEEEEEEeCC------EEEEEEECCCHHHHH
Confidence 68999999999999999996421 3667788899999998888777654 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC-HHHHHHHHHHHh---CCC-ccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN-PEACEEQLQTLF---NID-KKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~-~~~~~~~~~~~~---~~~-~~~~i 157 (257)
.++..++..+|++++|+|+++ +|+.+.+ .+...+++++++ ++. ..++|
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEE
Confidence 999999999999999999986 6765432 223344444443 332 57899
Q ss_pred EecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHHHHhhC
Q psy12244 158 RIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
++||++|.|++++++.|... .+.+..+. ...+..+++++. .+.++.|++.+|....++.+...+.
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l--~~~~~~~~--~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~ 214 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNL--LESLDIKR--IQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI 214 (581)
T ss_pred EEeCCCCCCchhHHHHHHHH--HHhCCCcC--cCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCC
Confidence 99999999999999887632 22222211 233456676653 3457789999999999998866653
No 34
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.87 E-value=6.6e-22 Score=169.58 Aligned_cols=184 Identities=32% Similarity=0.502 Sum_probs=145.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
...+||+|+-|+++|||||+.+|+.+.+..... -...++|....|+++|+|+-...+.+.|++ +.++++|||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~------~~INIvDTP 76 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG------TRINIVDTP 76 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC------eEEEEecCC
Confidence 457899999999999999999999988877655 344678999999999999999999999988 999999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh---CCC--
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF---NID-- 152 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~---~~~-- 152 (257)
||.+|-.+..+.++..|+++|+|||.+ +|++.++++++.++..++| +..
T Consensus 77 GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 77 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred CcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh
Confidence 999999999999999999999999998 8999999999988887765 221
Q ss_pred --ccceEEecccccc----------cccccccccCCCcccCCCCCCCCCCCCCCCcch-----hhhcceeeEeeecccch
Q psy12244 153 --KKSVLRIWHRRCF----------SCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI-----ARIRNFSIIAHVDHGKS 215 (257)
Q Consensus 153 --~~~~i~iSa~~g~----------gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~G~v~~Gk~ 215 (257)
..|++..||+.|. ++.-||+.|. +..|.|......+.++.+ ....+..++|++.+|+.
T Consensus 157 QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~-----~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~v 231 (603)
T COG1217 157 QLDFPIVYASARNGTASLDPEDEADDMAPLFETIL-----DHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTV 231 (603)
T ss_pred hCCCcEEEeeccCceeccCccccccchhHHHHHHH-----HhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcc
Confidence 2478999999985 2233444333 344556655555555543 23456667888888877
Q ss_pred hhHHH
Q psy12244 216 TLADR 220 (257)
Q Consensus 216 ~~~~~ 220 (257)
..+..
T Consensus 232 k~~q~ 236 (603)
T COG1217 232 KPNQQ 236 (603)
T ss_pred cCCCe
Confidence 65554
No 35
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.87 E-value=2.7e-22 Score=177.31 Aligned_cols=185 Identities=21% Similarity=0.285 Sum_probs=134.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------------cC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------------LD 91 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------------~~ 91 (257)
++..+|+++||.++|||||+++|.. ...|..++|+++|+|++..+..+.+... .+
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~-----------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTG-----------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCP 75 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhC-----------eecccCHhHHhcCcEEEecccccccccccccCcccccccccccc
Confidence 3567899999999999999999943 1368888999999999987655444210 00
Q ss_pred ------CccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC
Q psy12244 92 ------GEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN 137 (257)
Q Consensus 92 ------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~ 137 (257)
+..+.++|||||||++|..++..++..+|++++|+|+.. +|+.+.+
T Consensus 76 ~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 76 NCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred ccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch
Confidence 113689999999999999999999999999999999983 6665432
Q ss_pred -HHHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh------------
Q psy12244 138 -PEACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI------------ 201 (257)
Q Consensus 138 -~~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 201 (257)
.....++++.++. ....+++++||++|.|+++|++.|... ++.+.+....+..+++.+.
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~-----l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~ 230 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE-----IPTPERDLDKPPRMYVARSFDVNKPGTPPEK 230 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh-----CCCCCCCCCCCceEEEEeeeeecCCCccccC
Confidence 2223344554442 224679999999999999999988742 1223333334445666542
Q ss_pred -cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 -RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 -~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
++.++.|++.+|....++.+...++
T Consensus 231 ~~G~Vv~G~v~~G~l~~gd~v~i~P~ 256 (411)
T PRK04000 231 LKGGVIGGSLIQGVLKVGDEIEIRPG 256 (411)
T ss_pred CcceEEEEEEEeCEEecCCEEEEcCC
Confidence 3457889999999999998877664
No 36
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.87 E-value=2.2e-21 Score=162.28 Aligned_cols=136 Identities=35% Similarity=0.493 Sum_probs=116.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
||+++||+|+|||||+++|++..+.+... +..+.+|..+.|+++|+|++.....+.|.+ ++++|||||||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~------~~i~liDTPG~ 74 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD------HRINIIDTPGH 74 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC------EEEEEEECCCc
Confidence 68999999999999999999888766432 457789999999999999999999999987 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccc-eEE
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKS-VLR 158 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~-~i~ 158 (257)
.+|...+..+++.+|++++|+|+.. +|+..++.+...+++++.++....+ ++|
T Consensus 75 ~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 75 VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence 9999999999999999999999976 8888778888899999988765443 689
Q ss_pred eccccc-ccccccc
Q psy12244 159 IWHRRC-FSCADCH 171 (257)
Q Consensus 159 iSa~~g-~gi~~l~ 171 (257)
+|+..+ .|+-++.
T Consensus 155 isa~~~f~g~vd~~ 168 (270)
T cd01886 155 IGEEDDFRGVVDLI 168 (270)
T ss_pred cccCCCceEEEEcc
Confidence 998754 3444443
No 37
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.8e-21 Score=158.29 Aligned_cols=184 Identities=20% Similarity=0.346 Sum_probs=130.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccc--cCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~--~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....||+.+||+++|||||..+|........ ....+...|..++|+++|+|++.....++... ..+..+|||
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~------rhyahVDcP 83 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN------RHYAHVDCP 83 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC------ceEEeccCC
Confidence 4567999999999999999999865332111 11233446788999999999986655555444 678899999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-C-HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-N-PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~-~~~~~~~~~~~~---~~ 151 (257)
||.||.++|+.++.++|++|||+.|.+ +|+.+. + .+.+..+++++| ++
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998 676542 2 333344445444 55
Q ss_pred C--ccceEEeccccc-cc-------ccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchh
Q psy12244 152 D--KKSVLRIWHRRC-FS-------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKST 216 (257)
Q Consensus 152 ~--~~~~i~iSa~~g-~g-------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~ 216 (257)
+ ..|++.-||+.. +| |.+|++.+. +.++.|.+...+++.+|+.+. |+.++.|++..|...
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd-----~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lk 238 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVD-----SYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILK 238 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHH-----hcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeec
Confidence 5 457877776652 22 344444444 556778888888888998776 455566777777665
Q ss_pred hHHH
Q psy12244 217 LADR 220 (257)
Q Consensus 217 ~~~~ 220 (257)
.++.
T Consensus 239 vg~e 242 (394)
T COG0050 239 VGEE 242 (394)
T ss_pred cCCE
Confidence 5554
No 38
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=1.1e-20 Score=151.31 Aligned_cols=141 Identities=40% Similarity=0.638 Sum_probs=109.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCC--CcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG--SSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~--~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+++|+++|++|+|||||+++|++..+.+.... ..+..+..+.+...|+|.......+.+.. ..++||||||+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~------~~~~l~DtpG~ 75 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKD------TKINIVDTPGH 75 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECC------EEEEEEECCCc
Confidence 57999999999999999999998655543331 13446666778888888877666666655 88999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh---C----CC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF---N----ID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~---~----~~ 152 (257)
.+|...+..+++.+|++++|+|+.+ +|+...+.+...+++.+.+ + ..
T Consensus 76 ~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence 9999999999999999999999876 7876555555555555544 1 12
Q ss_pred ccceEEeccccccccccccccc
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i 174 (257)
..+++++||++|.|+.++.+..
T Consensus 156 ~~~iv~~Sa~~g~~~~~~~~~~ 177 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPS 177 (194)
T ss_pred ccCEEEeehhccccccccccch
Confidence 4579999999999997765443
No 39
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.2e-21 Score=161.20 Aligned_cols=189 Identities=21% Similarity=0.294 Sum_probs=144.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec--------------ccC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS--------------ILD 91 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--------------~~~ 91 (257)
+...||+++||+++|||||..+|.+- -.|.+.+|-++|+|+..+++...+.. .|.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv-----------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~ 76 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV-----------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCP 76 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce-----------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCC
Confidence 45679999999999999999999541 36889999999999998888643211 011
Q ss_pred ------CccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCC-
Q psy12244 92 ------GEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNA- 136 (257)
Q Consensus 92 ------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~- 136 (257)
.-.+.+.|+|+|||+-++..|++++...|+++||++|++ +|+...
T Consensus 77 ~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E 156 (415)
T COG5257 77 NCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRE 156 (415)
T ss_pred CCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHH
Confidence 123578999999999999999999999999999999998 666432
Q ss_pred CHHHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCc-------------chhh
Q psy12244 137 NPEACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDI-------------PIAR 200 (257)
Q Consensus 137 ~~~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 200 (257)
...+..+++++++. ....|++|+||..+.|++.|+++|.+ .++.|.++...+..| +..+
T Consensus 157 ~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~-----~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~ 231 (415)
T COG5257 157 RALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEK-----YIPTPERDLDKPPRMYVARSFDVNKPGTPPEE 231 (415)
T ss_pred HHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHH-----hCCCCccCCCCCceEEEEeecccCCCCCCHHH
Confidence 23455567777762 34569999999999999999999983 444444433332222 3455
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS 230 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~ 230 (257)
.++-++-|.+-.|...++|.|-..+|....
T Consensus 232 L~GGViGGsl~~G~l~vGDEIEIrPGi~v~ 261 (415)
T COG5257 232 LKGGVIGGSLVQGVLRVGDEIEIRPGIVVE 261 (415)
T ss_pred ccCceecceeeeeeEecCCeEEecCCeEee
Confidence 677788899999999999999888886544
No 40
>PRK00007 elongation factor G; Reviewed
Probab=99.85 E-value=2.1e-20 Score=175.22 Aligned_cols=144 Identities=34% Similarity=0.478 Sum_probs=123.4
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
..+.++++||+|+||+|+|||||+++|++..+.+... +..+++|..+.|+++|+|++.....+.|.+ +++
T Consensus 4 ~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~------~~~ 77 (693)
T PRK00007 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD------HRI 77 (693)
T ss_pred cCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC------eEE
Confidence 3456789999999999999999999999887765432 457899999999999999999999999877 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+|+|||||.+|..++..+++.+|++|+|+|+.. +|+.+++.....+++++.++.
T Consensus 78 ~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 78 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred EEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999976 888888888888999888865
Q ss_pred Cc-cceEEeccccc-ccccccc
Q psy12244 152 DK-KSVLRIWHRRC-FSCADCH 171 (257)
Q Consensus 152 ~~-~~~i~iSa~~g-~gi~~l~ 171 (257)
.. ...+|+|+..+ .|+.+++
T Consensus 158 ~~~~~~ipisa~~~f~g~~d~~ 179 (693)
T PRK00007 158 NPVPIQLPIGAEDDFKGVVDLV 179 (693)
T ss_pred CeeeEEecCccCCcceEEEEcc
Confidence 43 34689999887 4555544
No 41
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=9e-21 Score=151.49 Aligned_cols=140 Identities=24% Similarity=0.379 Sum_probs=106.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCCccEEEEEeC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDGEEYLLNLID 101 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~~~~~~~liD 101 (257)
+|+++|++|+|||||+++|+...+ ...++....++++|+|++.....+.+... ..+..+.+++||
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~-------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 74 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS-------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVD 74 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc-------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEE
Confidence 799999999999999999986421 23467778889999999988777776510 022357899999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC-CHHHHHHHHHH----Hh-
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA-NPEACEEQLQT----LF- 149 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~-~~~~~~~~~~~----~~- 149 (257)
||||.+|......++..+|++++|+|+.. +|+... ..+...+++++ .+
T Consensus 75 tpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 75 CPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888889999999999975 666432 22333333333 22
Q ss_pred --CCCccceEEecccccccccccccccCC
Q psy12244 150 --NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 --~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+....+++++||++|.|+++|++.|..
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 334568999999999999999998873
No 42
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.2e-20 Score=170.10 Aligned_cols=181 Identities=17% Similarity=0.261 Sum_probs=121.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+++|+|+|++|+|||||+|+|++...... ....|+|.+.....+.+.+ ..+.+|||||+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-------------~~~~gvT~d~~~~~~~~~~------~~~~l~DT~G~ 96 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVV-------------EDVPGVTRDRVSYDAEWNG------RRFTVVDTGGW 96 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccc-------------cCCCCCCEeeEEEEEEECC------cEEEEEeCCCc
Confidence 3567899999999999999999976433221 2255777776666666655 67899999998
Q ss_pred cc--------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 106 VD--------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~--------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
.. +...+..++..+|++|+|+|++. +|+.....+ ..++. .+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--~~~~~-~~g~ 173 (472)
T PRK03003 97 EPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--AAALW-SLGL 173 (472)
T ss_pred CCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--hHHHH-hcCC
Confidence 63 44455667889999999999986 665432111 11111 1233
Q ss_pred CccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS 231 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~ 231 (257)
. .++++||++|.|+++|++.|..... +. +.. . . ...+...++++|+.+.||+++..+++.........
T Consensus 174 ~--~~~~iSA~~g~gi~eL~~~i~~~l~-~~---~~~-~-~----~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~ 241 (472)
T PRK03003 174 G--EPHPVSALHGRGVGDLLDAVLAALP-EV---PRV-G-S----ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDD 241 (472)
T ss_pred C--CeEEEEcCCCCCcHHHHHHHHhhcc-cc---ccc-c-c----ccccceEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 2 3579999999999999988874321 10 000 0 0 01134689999999999999999998765433333
Q ss_pred CCccccCCh
Q psy12244 232 GSSQVLDSL 240 (257)
Q Consensus 232 g~~~~~d~~ 240 (257)
-.+++.|..
T Consensus 242 ~~gtT~d~~ 250 (472)
T PRK03003 242 VAGTTVDPV 250 (472)
T ss_pred CCCccCCcc
Confidence 334555543
No 43
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.84 E-value=3.4e-20 Score=173.99 Aligned_cols=138 Identities=33% Similarity=0.496 Sum_probs=120.2
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEE
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYL 96 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~ 96 (257)
...+.++++||+|+||+|+|||||+++|++..+.+... ++.+.+|..+.|+++|+|++.....+.|.+ ++
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~------~~ 76 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG------HR 76 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC------eE
Confidence 34567789999999999999999999999888766332 456889999999999999999999999977 89
Q ss_pred EEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 97 LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 97 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
++|||||||.+|...+..+++.+|++|+|+|+.. +|+..++..+..+++++.++
T Consensus 77 i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 156 (689)
T TIGR00484 77 INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLG 156 (689)
T ss_pred EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999986 88887788888899988887
Q ss_pred CCccc-eEEeccccc
Q psy12244 151 IDKKS-VLRIWHRRC 164 (257)
Q Consensus 151 ~~~~~-~i~iSa~~g 164 (257)
....+ .+|+|+..+
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 65433 689999876
No 44
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.84 E-value=4.9e-20 Score=154.01 Aligned_cols=140 Identities=30% Similarity=0.506 Sum_probs=113.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
.|||+|+||+|+|||||+++|++..+.+.+. ......|..+.|+++++++......+.|.+ +.++|
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~------~~i~l 75 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD------CVINL 75 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC------EEEEE
Confidence 5899999999999999999999988776543 255678999999999999998888888877 89999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
||||||.+|...+..+++.+|++|+|+|+.. +|+..++.....+++++.++...
T Consensus 76 iDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~ 155 (267)
T cd04169 76 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDC 155 (267)
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCc
Confidence 9999999999989999999999999999976 78777777777888888888765
Q ss_pred cce-EEecccccccccccccccC
Q psy12244 154 KSV-LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~-i~iSa~~g~gi~~l~~~i~ 175 (257)
.|+ +|+. .|.++.-+.+.+.
T Consensus 156 ~~~~~Pi~--~~~~~~g~vd~~~ 176 (267)
T cd04169 156 TPLTWPIG--MGKDFKGVYDRRT 176 (267)
T ss_pred eeEEeccc--CCCceEEEEEhhh
Confidence 542 4443 3444443434343
No 45
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.9e-21 Score=170.52 Aligned_cols=175 Identities=22% Similarity=0.289 Sum_probs=135.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+++.|+++||+++|||||+..+...+... ....|+|...+..++.+.. .....++|+|||||
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~--------------~EaGGITQhIGA~~v~~~~---~~~~~itFiDTPGH 65 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA--------------GEAGGITQHIGAYQVPLDV---IKIPGITFIDTPGH 65 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc--------------ccCCceeeEeeeEEEEecc---CCCceEEEEcCCcH
Confidence 467789999999999999999996543322 1246789888888887742 01258999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCC------c
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNID------K 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~------~ 153 (257)
+-|..+..++...+|+++||||+++ +|+++.+++....++++. |+. .
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~E~~gg~ 144 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVPEEWGGD 144 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCHhhcCCc
Confidence 9999999999999999999999999 999998998888888764 322 2
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcc
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVL 229 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~ 229 (257)
..++|+||++|+|+++|++.+..++-...+ ...+....+++++..+.+.|...+.+.|++ +|++.
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~aev~el----------ka~~~~~a~gtviE~~~dkG~G~vatviv~-~GtL~ 209 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLAEVLEL----------KANPEGPARGTVIEVKLDKGLGPVATVIVQ-DGTLK 209 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHHHhh----------hcCCCCcceEEEEEEEeccCCCceEEEEEe-cCeEe
Confidence 468999999999999999988754321111 112233457888999999999898888877 66653
No 46
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=1.4e-20 Score=145.92 Aligned_cols=130 Identities=28% Similarity=0.415 Sum_probs=95.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|++.. .+.+..+..+++|++.....+.+.. ...+.+|||||+++|.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~DtpG~~~~~ 65 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE-----------TDRLPEEKKRGITIDLGFAYLDLPS-----GKRLGFIDVPGHEKFI 65 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc-----------cccchhhhccCceEEeeeEEEEecC-----CcEEEEEECCChHHHH
Confidence 68999999999999999996421 1233445566778877666665541 2689999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC-HHHHHHHHHHHhC---CCccceEE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN-PEACEEQLQTLFN---IDKKSVLR 158 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~-~~~~~~~~~~~~~---~~~~~~i~ 158 (257)
..+..+++.+|++++|+|+++ +|+.... .....+++.+.+. ....++++
T Consensus 66 ~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (164)
T cd04171 66 KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFP 145 (164)
T ss_pred HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEE
Confidence 888888999999999999864 5554321 1223344444442 23467999
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+||++|.|++++++.+.
T Consensus 146 ~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 146 VSAVTGEGIEELKEYLD 162 (164)
T ss_pred EeCCCCcCHHHHHHHHh
Confidence 99999999999988765
No 47
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=8.1e-21 Score=170.01 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=118.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
++|+++|++|+|||||+|+|++....+.. ...+.|.+.....+.+.+ ..+.+|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-------------~~~~~t~d~~~~~~~~~~------~~~~liDT~G~~~~ 62 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-------------DTPGVTRDRIYGEAEWLG------REFILIDTGGIEPD 62 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-------------CCCCCcccceEEEEEECC------cEEEEEECCCCCCc
Confidence 57999999999999999999764432221 235667776666677765 7899999999987
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
+......++..+|++|+|+|+.. +|..+ .+ ..+.++..+...
T Consensus 63 ~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~--~~---~~~~~~~~lg~~ 137 (435)
T PRK00093 63 DDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD--EE---ADAYEFYSLGLG 137 (435)
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc--ch---hhHHHHHhcCCC
Confidence 33445567889999999999986 44322 11 122222222223
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCc
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS 234 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~ 234 (257)
+++++||++|.|++++++.+.... ........ .....+++++|+.++||+++.++++..+..+.....+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~~~-----~~~~~~~~------~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g 206 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILEEL-----PEEEEEDE------EDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG 206 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHhhC-----Cccccccc------cccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC
Confidence 479999999999999998887411 00000000 1123678999999999999999999876544333333
Q ss_pred cccC
Q psy12244 235 QVLD 238 (257)
Q Consensus 235 ~~~d 238 (257)
++.|
T Consensus 207 tt~~ 210 (435)
T PRK00093 207 TTRD 210 (435)
T ss_pred ceEE
Confidence 4433
No 48
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=9.8e-21 Score=152.57 Aligned_cols=137 Identities=25% Similarity=0.301 Sum_probs=102.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-------------------
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI------------------- 89 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~------------------- 89 (257)
.+|+++||.|+|||||+.+|... ..|..+.+.++++|+...+..+.|...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-----------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-----------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPE 69 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccccc
Confidence 37999999999999999999431 245667788888888877777665400
Q ss_pred --c------CCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCC
Q psy12244 90 --L------DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDL 133 (257)
Q Consensus 90 --~------~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~ 133 (257)
+ ......++|||||||++|...+..++..+|++++|+|+.. +|+
T Consensus 70 ~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 70 CECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred ccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 0 0112789999999999999999999999999999999974 565
Q ss_pred CCC-CHHHHHHHHHHHhC---CCccceEEecccccccccccccccCC
Q psy12244 134 KNA-NPEACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 134 ~~~-~~~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
... ......+.+++.+. ....++|++||++|+|+++|+++|..
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 432 22333445555442 23457999999999999999998873
No 49
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=2.1e-20 Score=167.12 Aligned_cols=175 Identities=18% Similarity=0.252 Sum_probs=119.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc---
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV--- 106 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~--- 106 (257)
+|+++|++|+|||||+|+|++...++.. ...|.|.+.....+.+.+ ..+.+|||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-------------~~~g~t~d~~~~~~~~~~------~~~~liDTpG~~~~~ 61 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-------------DTPGVTRDRKYGDAEWGG------REFILIDTGGIEEDD 61 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-------------CCCCcccCceEEEEEECC------eEEEEEECCCCCCcc
Confidence 4899999999999999999865433322 245777777777777766 689999999973
Q ss_pred -----ccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 107 -----DFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 -----~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
.+...+..+++.+|++++|+|+.. +|+...+. ...+ +..+...+
T Consensus 62 ~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~---~~~lg~~~ 136 (429)
T TIGR03594 62 DGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAE---FYSLGFGE 136 (429)
T ss_pred hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHH---HHhcCCCC
Confidence 355567778899999999999976 55543221 1112 22233336
Q ss_pred eEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCcc
Q psy12244 156 VLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ 235 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~ 235 (257)
++++||++|.|++++++.+.... +...... . ......+++++|+.++||+++.++++..++.....-.++
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l-----~~~~~~~-~----~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gt 206 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELL-----PEEEEEE-E----EEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGT 206 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhc-----Ccccccc-c----ccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCc
Confidence 89999999999999988876321 1111100 0 011235689999999999999999988665443333344
Q ss_pred ccC
Q psy12244 236 VLD 238 (257)
Q Consensus 236 ~~d 238 (257)
+.|
T Consensus 207 t~~ 209 (429)
T TIGR03594 207 TRD 209 (429)
T ss_pred eEC
Confidence 444
No 50
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=4.3e-20 Score=172.80 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=122.6
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..++++|+|+|++|+|||||+++|...... ....+|+|.......+.+.+ +.++||||||
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~--------------~~e~~GIT~~iga~~v~~~~------~~ItfiDTPG 346 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA--------------AGEAGGITQHIGAYQVETNG------GKITFLDTPG 346 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc--------------ccccCceeeeccEEEEEECC------EEEEEEECCC
Confidence 357889999999999999999999642211 12246788887777777755 7899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC------C
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI------D 152 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~------~ 152 (257)
|.+|..++..+++.+|++|||+|+++ +|+...+.+.+..++... +. .
T Consensus 347 he~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~~~e~~g~ 425 (787)
T PRK05306 347 HEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GLVPEEWGG 425 (787)
T ss_pred CccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-cccHHHhCC
Confidence 99999999999999999999999986 888766666666655432 11 1
Q ss_pred ccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCc-----chhhhcceeeEeeecccchhhHHHHH
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDI-----PIARIRNFSIIAHVDHGKSTLADRLL 222 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~G~v~~Gk~~~~~~i~ 222 (257)
..++|++||++|.|+++|+++|.... +.+. .......+... ..+..++.+..+.+.+|....++.++
T Consensus 426 ~vp~vpvSAktG~GI~eLle~I~~~~--e~~~-l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv 497 (787)
T PRK05306 426 DTIFVPVSAKTGEGIDELLEAILLQA--EVLE-LKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVV 497 (787)
T ss_pred CceEEEEeCCCCCCchHHHHhhhhhh--hhhh-cccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEE
Confidence 35799999999999999999887321 1111 00001111111 12334566677777788777766654
No 51
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.83 E-value=1.5e-19 Score=148.67 Aligned_cols=120 Identities=37% Similarity=0.594 Sum_probs=105.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
||+++|++|+|||||+++|++..+.+.+. ...+..|..+.|+++|+|+......+.|.+ ++++|||||||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~------~~i~liDTPG~ 74 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED------TKVNLIDTPGH 74 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC------EEEEEEeCCCc
Confidence 68999999999999999999988776543 456778999999999999999888888877 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
.+|...+..+++.+|++++|+|+.. +|+..+++++..+++++.++....|
T Consensus 75 ~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~ 150 (237)
T cd04168 75 MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVP 150 (237)
T ss_pred cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999999987 7887778888899999888765443
No 52
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.82 E-value=3.5e-20 Score=169.51 Aligned_cols=175 Identities=19% Similarity=0.265 Sum_probs=121.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.++++|+++|++|+|||||+++|..... .....+|+|.+.....+.+.. ...++|||||||
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v--------------~~~e~~GIT~~ig~~~v~~~~-----~~~i~~iDTPGh 145 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKV--------------AQGEAGGITQHIGAYHVENED-----GKMITFLDTPGH 145 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc--------------ccccCCceeecceEEEEEECC-----CcEEEEEECCCC
Confidence 4678999999999999999999965321 112245788887776666643 137999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC------Cc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI------DK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~------~~ 153 (257)
++|..++..++..+|++++|+|+++ +|+.+.+.++..++++.. ++ ..
T Consensus 146 e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~-g~~~~~~~~~ 224 (587)
T TIGR00487 146 EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEY-GLVPEDWGGD 224 (587)
T ss_pred cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHh-hhhHHhcCCC
Confidence 9999999999999999999999885 788766666666655432 21 12
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcch-----hhhcceeeEeeecccchhhHHHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI-----ARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
.+++++||++|.|+++++++|........+. .....+....+ .+.++.+..|.+.+|....++.++.
T Consensus 225 ~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~---~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~ 296 (587)
T TIGR00487 225 TIFVPVSALTGDGIDELLDMILLQSEVEELK---ANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVV 296 (587)
T ss_pred ceEEEEECCCCCChHHHHHhhhhhhhhcccc---CCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEE
Confidence 4699999999999999999886422111111 01111222222 2335666778888887777776643
No 53
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.8e-21 Score=164.15 Aligned_cols=173 Identities=21% Similarity=0.285 Sum_probs=137.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
.|+..||.++|||||+.++.+. ..|..+++.++|+|++..+....... +.+.|||+|||++|.
T Consensus 2 ii~t~GhidHgkT~L~~altg~-----------~~d~l~EekKRG~TiDlg~~y~~~~d------~~~~fIDvpgh~~~i 64 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-----------VTDRLPEEKKRGITIDLGFYYRKLED------GVMGFIDVPGHPDFI 64 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-----------ccccchhhhhcCceEeeeeEeccCCC------CceEEeeCCCcHHHH
Confidence 4889999999999999999442 46889999999999999888877665 689999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-CHHHHHHHHHHHhCCCccceEEecc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-NPEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
.++..++...|+++||||+++ +|+.+. ..+...+++...+.+...++|++|+
T Consensus 65 ~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~ 144 (447)
T COG3276 65 SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSA 144 (447)
T ss_pred HHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhccccccccccccc
Confidence 999999999999999999976 555432 2444555665556677788999999
Q ss_pred cccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHHHHh
Q psy12244 162 RRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 162 ~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
++|+||++|.+.|..++ + .+.+....++.+++++. .+.++.|.+-+|++...|.++..
T Consensus 145 ~~g~GI~~Lk~~l~~L~--~---~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~ 207 (447)
T COG3276 145 KTGRGIEELKNELIDLL--E---EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLS 207 (447)
T ss_pred ccCCCHHHHHHHHHHhh--h---hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEe
Confidence 99999999999988543 1 23444555566766653 56677888889999888887554
No 54
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.82 E-value=5.8e-20 Score=170.55 Aligned_cols=180 Identities=23% Similarity=0.324 Sum_probs=123.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.++++|+++|++|+|||||+++|+..... ....+|+|.......+.+.. ++....++|||||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~--------------~~e~~GiTq~i~~~~v~~~~--~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA--------------QKEAGGITQKIGAYEVEFEY--KDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc--------------cccCCccccccceEEEEEEe--cCCceEEEEEECCcH
Confidence 57789999999999999999999764332 12235777776666655543 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHH------hCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTL------FNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~------~~~~~ 153 (257)
+.|..++..++..+|++|||||+++ +|+...+.+.+.+++... ++ ..
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g-~~ 384 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWG-GD 384 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhC-CC
Confidence 9999999999999999999999876 788766666555555432 11 23
Q ss_pred cceEEecccccccccccccccCCCcccCCCC-CCCCCCCC-CCCcchhhhcceeeEeeecccchhhHHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLA-KPDSKATP-YEDIPIARIRNFSIIAHVDHGKSTLADRLL 222 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~ 222 (257)
.+++++||++|.|+++|++.|..+.....+. .+...... ......+..++.+..+.+.+|....++.++
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv 455 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIV 455 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEE
Confidence 5799999999999999999887542111111 11110000 001122345666777777788777666653
No 55
>PRK12739 elongation factor G; Reviewed
Probab=99.82 E-value=1.7e-19 Score=169.31 Aligned_cols=137 Identities=35% Similarity=0.514 Sum_probs=118.5
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
++.++++||+|+||+|+|||||+++|++..+.+... +..+++|..+.|+++|+|++.....+.|.+ ++++
T Consensus 3 ~~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~------~~i~ 76 (691)
T PRK12739 3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG------HRIN 76 (691)
T ss_pred CCccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC------EEEE
Confidence 356789999999999999999999999877765332 457899999999999999999999999977 8999
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCC
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
|||||||.+|..++..+++.+|++|+|+|+.. +|+..++..+..+++++.++..
T Consensus 77 liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~ 156 (691)
T PRK12739 77 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGAN 156 (691)
T ss_pred EEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999986 8888778888889998888654
Q ss_pred cc-ceEEecccccc
Q psy12244 153 KK-SVLRIWHRRCF 165 (257)
Q Consensus 153 ~~-~~i~iSa~~g~ 165 (257)
.. ..+|+|+..+.
T Consensus 157 ~~~~~iPis~~~~f 170 (691)
T PRK12739 157 AVPIQLPIGAEDDF 170 (691)
T ss_pred ceeEEecccccccc
Confidence 33 35789987764
No 56
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=3.3e-20 Score=151.26 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=107.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec------------------ccC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS------------------ILD 91 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~------------------~~~ 91 (257)
+|+++|+.++|||||+++|....-..........++.+++|.++|.|.......+.+.. .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48899999999999999997522211111334567888999999988653332222111 112
Q ss_pred CccEEEEEeCCCCCcccHHHHHHhhh--hcceEEEEEecCc--------------------------cCCCCC-CHHHHH
Q psy12244 92 GEEYLLNLIDTPGHVDFSNEVTRSLA--ACQGVVLLIDANQ--------------------------VDLKNA-NPEACE 142 (257)
Q Consensus 92 ~~~~~~~liDtpG~~~~~~~~~~~~~--~aD~~ilVvd~~~--------------------------~D~~~~-~~~~~~ 142 (257)
...+.++|+|||||++|.+.+..++. .+|++++|+|+.. +|+... ...+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHH
Confidence 23478999999999999999998886 7999999999976 676443 245666
Q ss_pred HHHHHHhCC--------------------------CccceEEecccccccccccccccCCCc
Q psy12244 143 EQLQTLFNI--------------------------DKKSVLRIWHRRCFSCADCHRSLDSTN 178 (257)
Q Consensus 143 ~~~~~~~~~--------------------------~~~~~i~iSa~~g~gi~~l~~~i~~~~ 178 (257)
+++++.+.. ...|+|++||++|+|+++|.++|..+|
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~lp 222 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLLP 222 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhcC
Confidence 666665531 124899999999999999999998654
No 57
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=1.7e-19 Score=169.77 Aligned_cols=184 Identities=16% Similarity=0.228 Sum_probs=121.9
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
.....++|+|+|++|+|||||+|+|++....+. +...|+|.+.......+.+ ..+.+||||
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-------------~~~pGvT~d~~~~~~~~~~------~~~~liDT~ 331 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVV-------------EDTPGVTRDRVSYDAEWAG------TDFKLVDTG 331 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceee-------------cCCCCeeEEEEEEEEEECC------EEEEEEeCC
Confidence 344567899999999999999999986443322 2246778777666666655 789999999
Q ss_pred CCcc--------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 104 GHVD--------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 104 G~~~--------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
|+.. +...+..++..+|++|+|+|+.. +|+.... ....+++
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~-----~~~~~~~ 406 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE-----YDAAEFW 406 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch-----hhHHHHH
Confidence 9763 45556677899999999999976 4543211 1112222
Q ss_pred CCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcc
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVL 229 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~ 229 (257)
......++++||++|.|+++|++.|...... . .... . ........+++++|+.++||+++.++++.....+.
T Consensus 407 ~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~-~----~~~~-~--a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v 478 (712)
T PRK09518 407 KLGLGEPYPISAMHGRGVGDLLDEALDSLKV-A----EKTS-G--FLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVV 478 (712)
T ss_pred HcCCCCeEEEECCCCCCchHHHHHHHHhccc-c----cccc-c--ccCCCCCcEEEEECCCCCCHHHHHHHHhCcccccc
Confidence 1222246899999999999999888743211 0 0000 0 00011246899999999999999999987654333
Q ss_pred cCCCccccCC
Q psy12244 230 SSGSSQVLDS 239 (257)
Q Consensus 230 ~~g~~~~~d~ 239 (257)
..-.+++.|.
T Consensus 479 ~~~~gtT~d~ 488 (712)
T PRK09518 479 NDLAGTTRDP 488 (712)
T ss_pred CCCCCCCcCc
Confidence 3233444443
No 58
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.4e-19 Score=165.41 Aligned_cols=124 Identities=41% Similarity=0.654 Sum_probs=114.0
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
.++.+||+|+||.++|||||..+|+..+|.+.+. .+..++|+...|++||+|+......+.|.+ .+.++||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-----~~~iNlI 81 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-----DYRINLI 81 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-----ceEEEEe
Confidence 5789999999999999999999999999998875 556699999999999999999999999973 3899999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
|||||.||...+.++++.+|++++|+|+.. ||+..+++....++++..++...
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~ 160 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANP 160 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCc
Confidence 999999999999999999999999999998 99999999999999999886543
No 59
>KOG1145|consensus
Probab=99.81 E-value=2.2e-20 Score=163.09 Aligned_cols=132 Identities=27% Similarity=0.347 Sum_probs=109.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+++.|.|+||+++|||||+..|.+...+. ....|+|...+.+.+.+.. ...++|+|||||
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA--------------~E~GGITQhIGAF~V~~p~-----G~~iTFLDTPGH 211 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAA--------------GEAGGITQHIGAFTVTLPS-----GKSITFLDTPGH 211 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceeh--------------hhcCCccceeceEEEecCC-----CCEEEEecCCcH
Confidence 478899999999999999999996544332 2246788887777776642 278999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHH------hCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTL------FNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~------~~~~~ 153 (257)
.-|..+..+++..+|.++|||.+.+ ||+++++++++.+++... +| ..
T Consensus 212 aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~G-Gd 290 (683)
T KOG1145|consen 212 AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLG-GD 290 (683)
T ss_pred HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcC-Cc
Confidence 9999999999999999999999998 999999999998887653 22 23
Q ss_pred cceEEecccccccccccccccCCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
.+++|+||++|+|++.|.+.+..+
T Consensus 291 VQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred eeEEEeecccCCChHHHHHHHHHH
Confidence 578999999999999998888744
No 60
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=4.6e-19 Score=140.57 Aligned_cols=141 Identities=34% Similarity=0.535 Sum_probs=107.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+|+++|.+|+|||||+|+|++........ ......+....+..+++|.......+.+.. ..+.||||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD------RRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC------EEEEEEeCCCcHH
Confidence 58999999999999999998876554332 111345566677788888876666666554 7899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCC-CCHHHHHHHHHHHhCC---------
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKN-ANPEACEEQLQTLFNI--------- 151 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~-~~~~~~~~~~~~~~~~--------- 151 (257)
+...+..+++.+|++++|+|+.. +|+.. .......+++++.+..
T Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 75 FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 99999999999999999999975 66653 3344555555555422
Q ss_pred -----CccceEEecccccccccccccccCC
Q psy12244 152 -----DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 -----~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++++||++|.|+++++++|..
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 3467999999999999999988773
No 61
>PRK13351 elongation factor G; Reviewed
Probab=99.80 E-value=1.5e-19 Score=169.88 Aligned_cols=121 Identities=40% Similarity=0.650 Sum_probs=102.3
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
++.++.+||+|+|+.|+|||||+++|++..+.+... ...+.+|..+.|+++++|+......+.|.. +.++
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~------~~i~ 76 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN------HRIN 76 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC------EEEE
Confidence 456788999999999999999999999877665433 245678899999999999999888888876 8999
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
|||||||.+|...+..+++.+|++++|+|++. +|+..+++....+++++.+
T Consensus 77 liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l 153 (687)
T PRK13351 77 LIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERF 153 (687)
T ss_pred EEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 7777666666666665543
No 62
>KOG0459|consensus
Probab=99.80 E-value=2.5e-20 Score=157.35 Aligned_cols=198 Identities=24% Similarity=0.274 Sum_probs=156.6
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASL 84 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~ 84 (257)
..+.....|++++||+++||||+-+.|+...+..+.. ...|.+|...++++.|-|+..+.+.+
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 4445677899999999999999999998888777655 56889999999999999999999988
Q ss_pred EeecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------
Q psy12244 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------------- 130 (257)
Q Consensus 85 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------- 130 (257)
+... ..+++.|+|||..|..+++.++.+||+.++|+.+..
T Consensus 153 Ete~------~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNK 226 (501)
T KOG0459|consen 153 ETEN------KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK 226 (501)
T ss_pred Eecc------eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEe
Confidence 8766 899999999999999999999999999999999976
Q ss_pred cCCC-----CCCHHHHHHHHHHHh---CCC---ccceEEecccccccccccccccCCCcccCCCC---------CCCCCC
Q psy12244 131 VDLK-----NANPEACEEQLQTLF---NID---KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLA---------KPDSKA 190 (257)
Q Consensus 131 ~D~~-----~~~~~~~~~~~~~~~---~~~---~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~---------~~~~~~ 190 (257)
||-+ ..+++++.+.+..++ |+. ...++|+|+.+|.|+.+.... ..|||.+.. ..++..
T Consensus 227 MddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s--~cpwy~gp~fl~~ld~l~~~~R~~ 304 (501)
T KOG0459|consen 227 MDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDS--VCPWYKGPIFLEYLDELPHLERIL 304 (501)
T ss_pred ccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccc--cCCcccCCccceehhccCcccccC
Confidence 4442 233566666666554 443 335899999999999998873 348877632 234444
Q ss_pred CCCCCcchhh---hcceeeEeeecccchhhHHHHHHhhCC
Q psy12244 191 TPYEDIPIAR---IRNFSIIAHVDHGKSTLADRLLEMTGT 227 (257)
Q Consensus 191 ~~~~~~~~~~---~~~~~~~G~v~~Gk~~~~~~i~~~~g~ 227 (257)
..+..+|+.+ ..+.++.|++.+|+.+.++.++..+..
T Consensus 305 ~GP~~~pI~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk 344 (501)
T KOG0459|consen 305 NGPIRCPVANKYKDMGTVVGGKVESGSIKKGQQLVVMPNK 344 (501)
T ss_pred CCCEEeehhhhccccceEEEEEecccceecCCeEEEccCC
Confidence 4555666543 356788999999999999988777653
No 63
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.80 E-value=1.1e-18 Score=141.84 Aligned_cols=102 Identities=53% Similarity=0.859 Sum_probs=86.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc----cCCccEEEEEeCC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI----LDGEEYLLNLIDT 102 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----~~~~~~~~~liDt 102 (257)
|||+++||+++|||||+++|+...+.+... ...+++|..+.|+++|+|+......+.|... .++..+.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 589999999999999999999988766543 3456789999999999999987777777530 0134689999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||.+|...+..+++.+|++++|+|+..
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~ 108 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVE 108 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCC
Confidence 9999999999999999999999999985
No 64
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.80 E-value=1e-18 Score=146.66 Aligned_cols=143 Identities=26% Similarity=0.338 Sum_probs=119.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
||+++|++|+|||||+++|++..+.+.+. ...++.|..+.++.+++|+......+.|.+ +.+++|||||+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~------~~i~liDtPG~ 74 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG------HKINLIDTPGY 74 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC------EEEEEEECcCH
Confidence 58999999999999999999877665433 456778889999999999988888888876 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
.+|...+..+++.+|++++|+|++. +|+...+.++..+++++.++.... .+.+
T Consensus 75 ~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~-~~~i 153 (268)
T cd04170 75 ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVV-PLQL 153 (268)
T ss_pred HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeE-EEEe
Confidence 9999999999999999999999987 788777788888899888765433 3456
Q ss_pred cccccccccccccccCCCcc
Q psy12244 160 WHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~~~~ 179 (257)
+..+|.|+..+.+.+....|
T Consensus 154 p~~~~~~~~~~vd~~~~~~~ 173 (268)
T cd04170 154 PIGEGDDFKGVVDLLTEKAY 173 (268)
T ss_pred cccCCCceeEEEEcccCEEE
Confidence 78899999888888775544
No 65
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=147.62 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=91.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+.--|+|+|+||+|||||+|+|++...++.+. ....|.....+.+... ..++.|+||||..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~-------------k~QTTR~~I~GI~t~~------~~QiIfvDTPGih 65 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSP-------------KPQTTRNRIRGIVTTD------NAQIIFVDTPGIH 65 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecC-------------CcchhhhheeEEEEcC------CceEEEEeCCCCC
Confidence 44569999999999999999999988887655 3333433333333333 4899999999975
Q ss_pred c--------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCH--HHHHHHHHHHhC
Q psy12244 107 D--------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANP--EACEEQLQTLFN 150 (257)
Q Consensus 107 ~--------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~--~~~~~~~~~~~~ 150 (257)
. +.+....++..+|+++||+|+.+ +|+...+. ....+.+...
T Consensus 66 ~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~-- 143 (298)
T COG1159 66 KPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKL-- 143 (298)
T ss_pred CcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhh--
Confidence 4 45556678889999999999998 56543322 2223333333
Q ss_pred CCccceEEecccccccccccccccC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+...++|+||++|.|++.|.+.+.
T Consensus 144 ~~f~~ivpiSA~~g~n~~~L~~~i~ 168 (298)
T COG1159 144 LPFKEIVPISALKGDNVDTLLEIIK 168 (298)
T ss_pred CCcceEEEeeccccCCHHHHHHHHH
Confidence 2334799999999999999887776
No 66
>KOG0460|consensus
Probab=99.79 E-value=2.5e-19 Score=148.48 Aligned_cols=185 Identities=24% Similarity=0.369 Sum_probs=124.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....||+.+||+++|||||..++..-....... ..+.-.|.-++|+.+|+|++.. .++|.. ...++.-+|||
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~a--HveYeT----a~RhYaH~DCP 125 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAA--HVEYET----AKRHYAHTDCP 125 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeee--eeeeec----cccccccCCCC
Confidence 345699999999999999999986533222111 3344568889999999999754 444433 22677799999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCC-CC-HHHHHHHHHHH---hCC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKN-AN-PEACEEQLQTL---FNI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~-~~-~~~~~~~~~~~---~~~ 151 (257)
||.||.++|+.+..+.|++||||.+++ .|+.+ .+ .+-+.-++++. +|+
T Consensus 126 GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 126 GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred chHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998 55542 22 22223344444 355
Q ss_pred C--ccceEEecccc---cc----cccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhh
Q psy12244 152 D--KKSVLRIWHRR---CF----SCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTL 217 (257)
Q Consensus 152 ~--~~~~i~iSa~~---g~----gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~ 217 (257)
+ ..|+|.-||+. |. |.+.+.+.++ +....++.|.+....++.+|+.+. |+.++.|++..|-...
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLld--avDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKk 283 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLD--AVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKK 283 (449)
T ss_pred CCCCCCeeecchhhhhcCCCccccHHHHHHHHH--HHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeeccccc
Confidence 4 46888777654 43 2222222222 233567888888888888888775 5555666666654433
Q ss_pred H
Q psy12244 218 A 218 (257)
Q Consensus 218 ~ 218 (257)
+
T Consensus 284 G 284 (449)
T KOG0460|consen 284 G 284 (449)
T ss_pred C
Confidence 3
No 67
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.78 E-value=4.1e-18 Score=154.45 Aligned_cols=128 Identities=30% Similarity=0.555 Sum_probs=110.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.+.++|+|+||+|+|||||+++|++..+.+... .....+|+.+.|+++|+|+......+.|.+ +.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~------~~i 82 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD------CLV 82 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC------eEE
Confidence 578999999999999999999999877776432 123678999999999999998888888877 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+|||||||.+|...+..+++.+|++|+|+|+.. +|+...+..++.++++..++.
T Consensus 83 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 83 NLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred EEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999986 788777888899999998876
Q ss_pred Cccc-eEEe
Q psy12244 152 DKKS-VLRI 159 (257)
Q Consensus 152 ~~~~-~i~i 159 (257)
...+ .+|+
T Consensus 163 ~~~~~~~PI 171 (527)
T TIGR00503 163 NCAPITWPI 171 (527)
T ss_pred CCccEEEEe
Confidence 6544 4676
No 68
>KOG0461|consensus
Probab=99.78 E-value=1.1e-18 Score=144.89 Aligned_cols=182 Identities=21% Similarity=0.342 Sum_probs=134.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec---ccCCccEEEEEeCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS---ILDGEEYLLNLIDTPG 104 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~~~~~~~~~liDtpG 104 (257)
..|++++||+++|||||..+|.... .+...|.++.+.++|+|.+.++..+.... ++.++..+++|+|+||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~-------STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELG-------STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhc-------cchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCC
Confidence 3789999999999999999996532 23467888999999999998877665432 2456678999999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCC-CCCC----HHHHHHHHHHHh---C
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDL-KNAN----PEACEEQLQTLF---N 150 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~-~~~~----~~~~~~~~~~~~---~ 150 (257)
|......++.+....|+.++|+|+.. +|. ++.. .++....+++-+ +
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998 444 3322 233333444444 3
Q ss_pred CCc-cceEEeccccc----ccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHH
Q psy12244 151 IDK-KSVLRIWHRRC----FSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADR 220 (257)
Q Consensus 151 ~~~-~~~i~iSa~~g----~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~ 220 (257)
+.. .|++++||+.| +++.+|.+.|.+ .+-.|.+++..++-|.++.. .+.++.|.+-+|+..+.+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s-----~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~ 234 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALES-----RIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTE 234 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHH-----hhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcE
Confidence 433 79999999999 888888887773 33335565555555665543 4556677777777776665
Q ss_pred H
Q psy12244 221 L 221 (257)
Q Consensus 221 i 221 (257)
+
T Consensus 235 i 235 (522)
T KOG0461|consen 235 I 235 (522)
T ss_pred E
Confidence 4
No 69
>KOG0092|consensus
Probab=99.78 E-value=2.9e-19 Score=137.10 Aligned_cols=131 Identities=16% Similarity=0.188 Sum_probs=95.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|..++|||||+-|+.. +.+.+..++ |+...+....+.- ++...+|.+|||+|++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk--------------~~F~e~~e~--TIGaaF~tktv~~--~~~~ikfeIWDTAGQE 65 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVK--------------DQFHENIEP--TIGAAFLTKTVTV--DDNTIKFEIWDTAGQE 65 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhh--------------Ccccccccc--ccccEEEEEEEEe--CCcEEEEEEEEcCCcc
Confidence 446899999999999999999954 222222233 3333333333332 5567899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
+|......+++.|+++|+|+|.++ +|+.+. .+...++.+.+.......+
T Consensus 66 Ry~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~-R~V~~~ea~~yAe~~gll~ 144 (200)
T KOG0092|consen 66 RYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER-REVEFEEAQAYAESQGLLF 144 (200)
T ss_pred cccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc-ccccHHHHHHHHHhcCCEE
Confidence 999999999999999999999998 566442 1222333344443445679
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++|||+|.|++++|..|.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~ 164 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAE 164 (200)
T ss_pred EEEecccccCHHHHHHHHHH
Confidence 99999999999999988874
No 70
>KOG0084|consensus
Probab=99.78 E-value=9.3e-19 Score=134.81 Aligned_cols=131 Identities=18% Similarity=0.257 Sum_probs=97.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|..|+|||.|+-+|.. +.+.++....+.++.....+.+ +++..++++|||+|+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~--------------~~f~e~~~sTIGVDf~~rt~e~----~gk~iKlQIWDTAGQ 68 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKD--------------DTFTESYISTIGVDFKIRTVEL----DGKTIKLQIWDTAGQ 68 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhcc--------------CCcchhhcceeeeEEEEEEeee----cceEEEEEeeecccc
Confidence 4678999999999999999999943 4455555555555554444544 667789999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
++|...+.++++.|+++|+|+|.+. +|+.+... ...++.+++......|
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~-v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRV-VSTEEAQEFADELGIP 147 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhee-cCHHHHHHHHHhcCCc
Confidence 9999999999999999999999998 55543321 1112222322223344
Q ss_pred -eEEecccccccccccccccC
Q psy12244 156 -VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 -~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++|||.+.||++.|..|.
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred ceeecccCCccCHHHHHHHHH
Confidence 99999999999999887775
No 71
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=1.7e-18 Score=134.85 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=90.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+........ . .......|+......+.+.. ..+.+|||||+..|.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~--------~--~~~~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~~~~~ 64 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG--------L--PPSKITPTVGLNIGTIEVGN------ARLKFWDLGGQESLR 64 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC--------C--cccccCCccccceEEEEECC------EEEEEEECCCChhhH
Confidence 5899999999999999999764321000 0 00122334444455555554 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH---hCCCcc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL---FNIDKK 154 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~---~~~~~~ 154 (257)
..+...++.+|++++|+|+.+ +|+.... ..+..+.+... ++....
T Consensus 65 ~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 65 SLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred HHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCce
Confidence 888899999999999999876 5654322 22222222221 123345
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHh
Confidence 799999999999999988775
No 72
>KOG0394|consensus
Probab=99.77 E-value=6.9e-19 Score=133.87 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=103.6
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
.......+++|.|+|.+|+|||||+|++.+.. .+++...|+...+...++.- +++...+.+|
T Consensus 2 ~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~k----------------F~~qykaTIgadFltKev~V--d~~~vtlQiW 63 (210)
T KOG0394|consen 2 SSLRKRTLLKVIILGDSGVGKTSLMNQYVNKK----------------FSQQYKATIGADFLTKEVQV--DDRSVTLQIW 63 (210)
T ss_pred CCcCcccceEEEEeCCCCccHHHHHHHHHHHH----------------HHHHhccccchhheeeEEEE--cCeEEEEEEE
Confidence 33344567899999999999999999997632 23344445544444433333 5667889999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC-HHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN-PEACEEQL 145 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~-~~~~~~~~ 145 (257)
||+|+++|.......++.||++++|+|.+. +|+.+.. .....+..
T Consensus 64 DTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A 143 (210)
T KOG0394|consen 64 DTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA 143 (210)
T ss_pred ecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH
Confidence 999999999998889999999999999987 6665422 33344444
Q ss_pred HHHh-CCCccceEEecccccccccccccccCCCcc
Q psy12244 146 QTLF-NIDKKSVLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 146 ~~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
++.. ....+|+|++|||.+.||++.|+.+.+.++
T Consensus 144 q~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 144 QTWCKSKGNIPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred HHHHHhcCCceeEEecccccccHHHHHHHHHHHHH
Confidence 4444 234678999999999999999988875443
No 73
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.77 E-value=5.3e-18 Score=153.71 Aligned_cols=123 Identities=34% Similarity=0.629 Sum_probs=106.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.+.+||+|+||+|+|||||+++|++..+.+... .....+|+.+.|+++|+|+......+.|++ +.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~------~~i 81 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD------CLI 81 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC------EEE
Confidence 578999999999999999999999877766433 122457899999999999998888888877 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++||||||.+|...+..+++.+|++|+|+|+.. +|+..++..+..+++++.++.
T Consensus 82 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 82 NLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred EEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999976 788777888888889888876
Q ss_pred Ccc
Q psy12244 152 DKK 154 (257)
Q Consensus 152 ~~~ 154 (257)
...
T Consensus 162 ~~~ 164 (526)
T PRK00741 162 ACA 164 (526)
T ss_pred CCe
Confidence 543
No 74
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.77 E-value=2.6e-18 Score=133.86 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=92.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+.|+++|++|+|||||+++|+..... .....+.|.......+.+.. .....+.+|||||+..|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~---~~~~~~~iiDtpG~~~~ 63 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA--------------AGEAGGITQHIGAFEVPAEV---LKIPGITFIDTPGHEAF 63 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc--------------cccCCCeEEeeccEEEeccc---CCcceEEEEeCCCcHHH
Confidence 36999999999999999999753211 11223455554444444320 12368999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC------CCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN------IDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~------~~~~~~ 156 (257)
...+..++..+|++++|+|++. +|+...+.+...+.+..... ....++
T Consensus 64 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (168)
T cd01887 64 TNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQI 143 (168)
T ss_pred HHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcE
Confidence 8888888999999999999975 67654444444444433211 123579
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++||++|.|+++++++|.+
T Consensus 144 ~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T cd01887 144 VPTSAKTGEGIDDLLEAILL 163 (168)
T ss_pred EEeecccCCCHHHHHHHHHH
Confidence 99999999999999988874
No 75
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.7e-18 Score=146.68 Aligned_cols=138 Identities=33% Similarity=0.561 Sum_probs=117.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.+.++.+|+-||++|||||.+.|+..-+++... ......|+...|+++|+++.....++.|.+ +.+
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~------~~i 83 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD------CLV 83 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC------eEE
Confidence 467889999999999999999999877777443 456678999999999999999999999988 999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+|+|||||+||...+.+.+..+|.+++|+|+.. +|....++-+.++++.+.+++
T Consensus 84 NLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 84 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred eccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 788777888999999999988
Q ss_pred Cccce-EEec-ccccccccc
Q psy12244 152 DKKSV-LRIW-HRRCFSCAD 169 (257)
Q Consensus 152 ~~~~~-i~iS-a~~g~gi~~ 169 (257)
...|+ -||. ++.-.|+-.
T Consensus 164 ~~~PitWPIG~gk~F~Gvy~ 183 (528)
T COG4108 164 QCAPITWPIGMGKDFKGVYH 183 (528)
T ss_pred ceecccccccCCcccceeee
Confidence 76654 2443 444445533
No 76
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.76 E-value=8.1e-19 Score=133.96 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=83.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+|+|++....+ ..-+|.|++.....+.+.+ ..+.|+|+||..++.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v--------------~n~pG~Tv~~~~g~~~~~~------~~~~lvDlPG~ysl~ 61 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKV--------------GNWPGTTVEKKEGIFKLGD------QQVELVDLPGIYSLS 61 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE--------------EESTTSSSEEEEEEEEETT------EEEEEEE----SSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcee--------------cCCCCCCeeeeeEEEEecC------ceEEEEECCCcccCC
Confidence 69999999999999999998755332 2247888888888888766 899999999964421
Q ss_pred ------HHHHHhh--hhcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhCCCccce
Q psy12244 110 ------NEVTRSL--AACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ------~~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (257)
.....++ ..+|++++|+|++. +|.... ....-.+.+.+.++ +|+
T Consensus 62 ~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg---~pv 138 (156)
T PF02421_consen 62 SKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG---VPV 138 (156)
T ss_dssp SSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT---S-E
T ss_pred CCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC---CCE
Confidence 1122333 57999999999998 333111 11112445666665 469
Q ss_pred EEeccccccccccccccc
Q psy12244 157 LRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i 174 (257)
+++||++|+|+++|++.|
T Consensus 139 i~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 139 IPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEBTTTTBTHHHHHHHH
T ss_pred EEEEeCCCcCHHHHHhhC
Confidence 999999999999987653
No 77
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=5.4e-18 Score=133.10 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=87.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|++.... ....|.......+.+.. ..+.+|||||+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-----------------~~~~t~g~~~~~~~~~~------~~l~l~D~~G~ 68 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-----------------TISPTLGFQIKTLEYEG------YKLNIWDVGGQ 68 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-----------------CcCCccccceEEEEECC------EEEEEEECCCC
Confidence 34568999999999999999999653110 00112222223333433 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN---- 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~---- 150 (257)
+.|...+...++.+|++++|+|+++ +|+.+.. ..+++.+.++
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~ 145 (173)
T cd04154 69 KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREALELDKI 145 (173)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHhCcccc
Confidence 9998888889999999999999987 5654322 1223333332
Q ss_pred -CCccceEEecccccccccccccccC
Q psy12244 151 -IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 -~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....++|++||++|.|++++++++.
T Consensus 146 ~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 146 SSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CCCceEEEeccCCCCcCHHHHHHHHh
Confidence 2345799999999999999988764
No 78
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=6.9e-18 Score=131.35 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=88.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+++|+...- ..+.....+.+.....+.+ ++....+.+|||||++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTF--------------SERQGNTIGVDFTMKTLEI----EGKRVKLQIWDTAGQE 63 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--------------cccCCCccceEEEEEEEEE----CCEEEEEEEEECCChH
Confidence 357899999999999999999964211 1111122222333333333 3344688999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+...++.+|++++|+|+++ +|+.+.+ ..+....+.+.++ ..
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~ 141 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNG--ML 141 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC--Cc
Confidence 999888889999999999999998 6664322 1122223333333 23
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++.+.
T Consensus 142 ~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 142 AVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999988765
No 79
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=1.9e-17 Score=134.44 Aligned_cols=101 Identities=42% Similarity=0.654 Sum_probs=84.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCcccc-----CCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLS-----SGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~-----~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
|+|+++|++|+|||||+++|+...+.... ....+.+|..+.|+++|+|+......+.+... ++..+.+++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-~~~~~~i~iiDtp 79 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-KGKSYLFNIIDTP 79 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-CCCEEEEEEEECC
Confidence 57999999999999999999998776642 13455678888999999999877777766531 3455889999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
||.+|...+..++..+|++++|+|+..
T Consensus 80 G~~~f~~~~~~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 80 GHVNFMDEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred CCcchHHHHHHHHHhCCEEEEEEECCC
Confidence 999999999999999999999999976
No 80
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.75 E-value=8.7e-18 Score=135.02 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=88.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
.|+++|..|+|||||+.+|+... +..+....++.+.....+.+ ++....+.+|||+|+++|.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--------------f~~~~~~Ti~~~~~~~~i~~----~~~~v~l~iwDtaGqe~~~ 63 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--------------FCEACKSGVGVDFKIKTVEL----RGKKIRLQIWDTAGQERFN 63 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--------------CCCcCCCcceeEEEEEEEEE----CCEEEEEEEEeCCCchhhH
Confidence 48999999999999999996521 11111223333433333443 4456889999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
..+..+++.+|++|+|+|.++ +|+.... .....+++.+.+ ...+++
T Consensus 64 ~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~--~~~~~~ 141 (202)
T cd04120 64 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQI--TGMRFC 141 (202)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhc--CCCEEE
Confidence 999999999999999999998 6664321 111122222221 234699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.||+++|+++.
T Consensus 142 etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 142 EASAKDNFNVDEIFLKLV 159 (202)
T ss_pred EecCCCCCCHHHHHHHHH
Confidence 999999999999998776
No 81
>KOG0094|consensus
Probab=99.74 E-value=9.3e-18 Score=128.97 Aligned_cols=128 Identities=15% Similarity=0.218 Sum_probs=95.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..++|||||++++++.. +....+..+.++.-...+.+ .+..+.+.+|||+|++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~--------------fd~~YqATIGiDFlskt~~l----~d~~vrLQlWDTAGQE 82 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDK--------------FDNTYQATIGIDFLSKTMYL----EDRTVRLQLWDTAGQE 82 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhh--------------hcccccceeeeEEEEEEEEE----cCcEEEEEEEecccHH
Confidence 45789999999999999999998743 22223444555555555554 4567999999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC---HHHHHHHHHHHhCCC
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN---PEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~---~~~~~~~~~~~~~~~ 152 (257)
+|......+++.++++|+|+|.++ -|+.+.. .++-. ..++.++
T Consensus 83 RFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~-~kAkel~-- 159 (221)
T KOG0094|consen 83 RFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE-RKAKELN-- 159 (221)
T ss_pred HHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH-HHHHHhC--
Confidence 999999999999999999999998 4554332 11111 2222233
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..|+++||+.|.||..+|..|..
T Consensus 160 -a~f~etsak~g~NVk~lFrrIaa 182 (221)
T KOG0094|consen 160 -AEFIETSAKAGENVKQLFRRIAA 182 (221)
T ss_pred -cEEEEecccCCCCHHHHHHHHHH
Confidence 35899999999999999988763
No 82
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=1.4e-17 Score=143.90 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=87.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+|+|++....+.. ...+.|.+.....+.+.+ .++.||||||+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-------------~k~~tTr~~~~~~~~~~~------~qi~~~DTpG~ 110 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-------------PKVQTTRSIITGIITLKD------TQVILYDTPGI 110 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeecc-------------CCCCCccCcEEEEEEeCC------eEEEEEECCCc
Confidence 45568999999999999999999764433211 123445444444455544 68999999998
Q ss_pred cc--------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 106 VD--------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~--------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
.+ +......++..+|++++|+|+.. +|+......+..+.+... .
T Consensus 111 ~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~--~ 188 (339)
T PRK15494 111 FEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTEN--H 188 (339)
T ss_pred CCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhc--C
Confidence 53 22223345789999999999875 666433222222222221 2
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...++|++||++|.|+++++++|..
T Consensus 189 ~~~~i~~iSAktg~gv~eL~~~L~~ 213 (339)
T PRK15494 189 PDSLLFPISALSGKNIDGLLEYITS 213 (339)
T ss_pred CCcEEEEEeccCccCHHHHHHHHHH
Confidence 2356899999999999999988874
No 83
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.74 E-value=1.6e-17 Score=158.68 Aligned_cols=106 Identities=49% Similarity=0.777 Sum_probs=91.9
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc----------cCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI----------LDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----------~~~ 92 (257)
.++++||+|+||+|+|||||+++|++..+.+... ...+.+|..+.|+++|+|++.....+.|... ...
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 4689999999999999999999999988877655 4556689999999999999988888777420 123
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.++|||||||.+|..++..+++.+|++|+|||+..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~ 133 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC
Confidence 45889999999999999999999999999999999997
No 84
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=1.2e-17 Score=140.36 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=82.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc-
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF- 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~- 108 (257)
.|+++|++|+|||||+|+|++....+... ..+.|........... ..++.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~-------------~~~TTr~~i~~i~~~~------~~qii~vDTPG~~~~~ 62 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP-------------KAQTTRNRISGIHTTG------ASQIIFIDTPGFHEKK 62 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC-------------CCCcccCcEEEEEEcC------CcEEEEEECcCCCCCc
Confidence 48999999999999999998754332221 2333433222222221 257999999998542
Q ss_pred -------HHHHHHhhhhcceEEEEEecCc-------------------------cCCCCCCHHHHHHHHHHHhCC-Cccc
Q psy12244 109 -------SNEVTRSLAACQGVVLLIDANQ-------------------------VDLKNANPEACEEQLQTLFNI-DKKS 155 (257)
Q Consensus 109 -------~~~~~~~~~~aD~~ilVvd~~~-------------------------~D~~~~~~~~~~~~~~~~~~~-~~~~ 155 (257)
...+..++..+|++++|+|++. +|+.. .+...+.+...... ...+
T Consensus 63 ~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~ 140 (270)
T TIGR00436 63 HSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKD 140 (270)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCc
Confidence 2234567789999999999986 56532 22233333332221 2236
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|++||++|.|+++|+++|..
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~ 161 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEV 161 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHH
Confidence 899999999999999888864
No 85
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.74 E-value=2e-17 Score=129.40 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=85.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+++|..... . ... .|.......+.+.. ..+.+|||||++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~--~-------------~~~--~t~g~~~~~~~~~~------~~~~l~Dt~G~~ 64 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS--V-------------TTI--PTVGFNVETVTYKN------VKFNVWDVGGQD 64 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC--c-------------ccc--CCcccceEEEEECC------EEEEEEECCCCH
Confidence 346899999999999999999953211 0 001 12222222233332 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC----
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI---- 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~---- 151 (257)
+|...+...++.+|++|+|+|+++ +|+.+.. ..+++++.++.
T Consensus 65 ~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~ 141 (168)
T cd04149 65 KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KPHEIQEKLGLTRIR 141 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CHHHHHHHcCCCccC
Confidence 998888889999999999999997 4543211 12334443322
Q ss_pred -CccceEEecccccccccccccccC
Q psy12244 152 -DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 -~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 142 ~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 142 DRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCcEEEEEeeCCCCCChHHHHHHHh
Confidence 123589999999999999998775
No 86
>PRK12740 elongation factor G; Reviewed
Probab=99.73 E-value=8.1e-18 Score=157.93 Aligned_cols=91 Identities=35% Similarity=0.610 Sum_probs=82.8
Q ss_pred EecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 34 IAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 34 vG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+||+|+|||||+++|++..+.+... ...+++|..+.|+++|+|+......+.|.+ +.++|||||||.+|.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------~~i~liDtPG~~~~~ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG------HKINLIDTPGHVDFT 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC------EEEEEEECCCcHHHH
Confidence 6999999999999999988876543 345789999999999999999989998877 899999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+..++..+|++++|+|++.
T Consensus 75 ~~~~~~l~~aD~vllvvd~~~ 95 (668)
T PRK12740 75 GEVERALRVLDGAVVVVCAVG 95 (668)
T ss_pred HHHHHHHHHhCeEEEEEeCCC
Confidence 999999999999999999987
No 87
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.73 E-value=1.2e-17 Score=130.41 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=87.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+...- ..+..+..+.+.....+.+ .+....+.+|||||+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~l~D~~g~~~ 64 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF--------------NPSFISTIGIDFKIRTIEL----DGKKIKLQIWDTAGQER 64 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC--------------CcccccCccceEEEEEEEE----CCEEEEEEEEeCCchHH
Confidence 46899999999999999999975321 1111122222222223333 33447899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
|.......++.+|++++|+|+++ +|+.+.. ..+....+...+ ..+
T Consensus 65 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 141 (167)
T cd01867 65 FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEY---GIK 141 (167)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---CCE
Confidence 98888888999999999999986 5664321 111122222222 246
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|++++++.+.
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 142 FLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999988776
No 88
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.73 E-value=1.9e-17 Score=128.21 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=82.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|........ ....|+......+.+.. ..+.+|||||+.+|.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~---------------~~~~t~g~~~~~~~~~~------~~~~l~Dt~G~~~~~ 59 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ---------------IIVPTVGFNVESFEKGN------LSFTAFDMSGQGKYR 59 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc---------------eecCccccceEEEEECC------EEEEEEECCCCHhhH
Confidence 489999999999999999965321000 01112222222233333 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCHHHHHHHHHHHhCCC----
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANPEACEEQLQTLFNID---- 152 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~~~~~~~~~~~~~~~---- 152 (257)
..+..+++.+|++|+|+|+++ +|+..... ..++...++..
T Consensus 60 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~l~~~~~~~ 136 (162)
T cd04157 60 GLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLGLENIKD 136 (162)
T ss_pred HHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---HHHHHHHhCCccccC
Confidence 999999999999999999976 44433211 12222222221
Q ss_pred -ccceEEecccccccccccccccC
Q psy12244 153 -KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 -~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+++++||++|.|+++++++|.
T Consensus 137 ~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 137 KPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ceEEEEEeeCCCCCchHHHHHHHh
Confidence 23589999999999999998875
No 89
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.73 E-value=1.5e-17 Score=132.31 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=91.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|..++|||||+.+|.... +..+..+.++.+.....+.+ ++....+.||||||++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~--------------~~~~~~~t~~~~~~~~~i~~----~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS--------------TESPYGYNMGIDYKTTTILL----DGRRVKLQLWDTSGQG 66 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--------------CCCCCCCcceeEEEEEEEEE----CCEEEEEEEEeCCCcH
Confidence 45789999999999999999996421 11111122333332333333 4455889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
+|...+..+++.+|++|||+|.++ +|+.+.. ..+..+.+.+.. ..+
T Consensus 67 ~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~---~~~ 143 (189)
T cd04121 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERN---GMT 143 (189)
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHc---CCE
Confidence 999988889999999999999998 6664321 122222333322 356
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.||+++|++|.+
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 144 FFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHH
Confidence 999999999999999998874
No 90
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=2.2e-17 Score=142.89 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=106.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.+.+|+|+|+||+|||||+|+|++....+... ..|.|++.....+++++ ..+.+|||+|..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-------------~aGTTRD~I~~~~e~~~------~~~~liDTAGiR 237 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-------------IAGTTRDSIDIEFERDG------RKYVLIDTAGIR 237 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-------------CCCccccceeeeEEECC------eEEEEEECCCCC
Confidence 57889999999999999999999988777654 67899999888899887 889999999975
Q ss_pred c----------c-HHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC---CHHHHHHHHH
Q psy12244 107 D----------F-SNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA---NPEACEEQLQ 146 (257)
Q Consensus 107 ~----------~-~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~---~~~~~~~~~~ 146 (257)
+ | ...+..++..+|.+++|+|+.. .|+.+. ..+...+++.
T Consensus 238 rk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~ 317 (444)
T COG1160 238 RKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLR 317 (444)
T ss_pred cccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHH
Confidence 4 2 2335667889999999999998 666443 3556666777
Q ss_pred HHhC-CCccceEEecccccccccccccccC
Q psy12244 147 TLFN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 147 ~~~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+. ...+|++++||++|.|+..+++.+.
T Consensus 318 ~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 318 RKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred HHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 6663 4557899999999999999998886
No 91
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.72 E-value=1.6e-17 Score=129.30 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=86.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+...-. .....+.+.+.....+.+ .+....+.+|||||+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~~~i~D~~G~~~ 63 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYT--------------ESYISTIGVDFKIRTIEL----DGKTIKLQIWDTAGQER 63 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEEEEEEE----CCEEEEEEEEECCCcHh
Confidence 368999999999999999999753211 011122222322233333 33447899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--HHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--EACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--~~~~~~~~~~~~~~~~~ 155 (257)
|.......++.+|++++|+|+++ +|+..... .+....+.+.+ ..+
T Consensus 64 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 140 (166)
T cd01869 64 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL---GIP 140 (166)
T ss_pred HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHc---CCe
Confidence 99888889999999999999987 44432210 11122223322 347
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|++++++.|.
T Consensus 141 ~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 141 FLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 99999999999999998775
No 92
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.72 E-value=1.6e-17 Score=128.52 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=88.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|++..-. .+..++.+.+.....+.+ ++....+.+|||||+..+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~l~~~D~~G~~~~ 62 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD--------------NQYQATIGIDFLSKTMYL----EDKTVRLQLWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--------------ccCCCceeeeEEEEEEEE----CCEEEEEEEEECCCcHHH
Confidence 37999999999999999999753221 122334444444444443 334467999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
...+...++.+|++++|+|+++ +|+.... ..+....+.+.. ..++
T Consensus 63 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~ 139 (161)
T cd01861 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL---NAMF 139 (161)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHh---CCEE
Confidence 9888889999999999999986 5552211 111222222222 3568
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 140 ~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 140 IETSAKAGHNVKELFRKIA 158 (161)
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 9999999999999988775
No 93
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=1.7e-17 Score=129.33 Aligned_cols=126 Identities=18% Similarity=0.210 Sum_probs=86.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|+.|+|||||+++|+...- .. +..+.+..+.....+.. ++....+.+|||||++.|
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~------------~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~ 64 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MA------------DCPHTIGVEFGTRIIEV----NGQKIKLQIWDTAGQERF 64 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC------------CCCcccceeEEEEEEEE----CCEEEEEEEEECCCcHHH
Confidence 5799999999999999999965311 00 00111111222222222 344578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
...+...++.+|++|+|+|+++ +|+.... ..+...++.+.. ..++
T Consensus 65 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~ 141 (166)
T cd04122 65 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN---GLLF 141 (166)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---CCEE
Confidence 9988899999999999999997 6664322 111222222222 3579
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++.+.
T Consensus 142 ~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 142 LECSAKTGENVEDAFLETA 160 (166)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999887665
No 94
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.72 E-value=3.7e-17 Score=126.60 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=87.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+..... .+..+.+..+.....+.+.. .+....+.+|||||+++|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--------------KDYKKTIGVDFLEKQIFLRQ--SDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCcEEEEEEEEEEEEcC--CCCEEEEEEeeCCchHHHH
Confidence 6999999999999999999652210 11122233333223333332 2445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCccceEE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVLR 158 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i~ 158 (257)
..+...++.+|++++|+|+++ +|+.... ..+..+.+.+.++ .++++
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~---~~~~~ 142 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ---LPLFR 142 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC---CeEEE
Confidence 888889999999999999987 5553221 1122223333333 46999
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+||++|.|+++++++|.
T Consensus 143 ~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 143 TSVKDDFNVTELFEYLA 159 (162)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999988765
No 95
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.72 E-value=4e-17 Score=127.11 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=86.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|++..-.. ...+..+.+.....+.. .+....+.+|||||+.+|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~g~~~~ 63 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--------------AFVSTVGIDFKVKTVFR----NDKRVKLQIWDTAGQERY 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCceeeEEEEEEEEE----CCEEEEEEEEECCChHHH
Confidence 579999999999999999996532110 00111111221122221 234478999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--HHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--EACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (257)
...+...++.+|++++|+|.++ +|+.+... .+...++.+.++ .++
T Consensus 64 ~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 140 (165)
T cd01865 64 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG---FEF 140 (165)
T ss_pred HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC---CEE
Confidence 9888899999999999999987 66643321 122233344344 369
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++.+.
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 141 FEASAKENINVKQVFERLV 159 (165)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999998876
No 96
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.72 E-value=1.2e-17 Score=152.77 Aligned_cols=182 Identities=21% Similarity=0.193 Sum_probs=109.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccC------------Ccc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILD------------GEE 94 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~------------~~~ 94 (257)
+++.|+++|++|+|||||+++|++..... ....++|...+...+.+..... ...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~--------------~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~ 68 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK--------------REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc--------------ccCCceecccCeeEeeecccccccccccccccccccc
Confidence 46789999999999999999997642211 1123355544444433321000 000
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCC-----------
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNAN----------- 137 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~----------- 137 (257)
..++|||||||+.|...+..+++.+|++++|+|+++ +|+....
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHH
Confidence 248899999999999999999999999999999974 6764210
Q ss_pred ----HHHHHH-----------HHHHHhCC------------CccceEEecccccccccccccccCCCcccCCCCCC-CCC
Q psy12244 138 ----PEACEE-----------QLQTLFNI------------DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKP-DSK 189 (257)
Q Consensus 138 ----~~~~~~-----------~~~~~~~~------------~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~-~~~ 189 (257)
...+.. ++.+ .++ ...+++|+||++|+|+++|.++|..+.. ..+... ...
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~-~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~-~~l~~~l~~~ 226 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHE-EGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ-QYLEEQLKLE 226 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHh-cCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH-HHhhhhhccC
Confidence 000100 1111 111 1357999999999999999987753211 001000 001
Q ss_pred CCCCCCcchh-----hhcceeeEeeecccchhhHHHHHHh
Q psy12244 190 ATPYEDIPIA-----RIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 190 ~~~~~~~~~~-----~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
...+..+++. +.++.++.|.+.+|....++.++..
T Consensus 227 ~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~ 266 (590)
T TIGR00491 227 EEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMA 266 (590)
T ss_pred CCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEc
Confidence 1122233332 2355667777888877777766543
No 97
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=3.6e-17 Score=126.40 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=83.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++++|||||+++|...... .. ..|+......+.+.. ..+.+|||||+.+|.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~----------~~-------~~t~~~~~~~~~~~~------~~~~i~Dt~G~~~~~ 57 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV----------TT-------IPTIGFNVETVTYKN------LKFQVWDLGGQTSIR 57 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc----------Cc-------CCccCcCeEEEEECC------EEEEEEECCCCHHHH
Confidence 4899999999999999999542110 00 112222222333333 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC-----Cc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI-----DK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~-----~~ 153 (257)
..+...+..+|++|+|+|+++ +|+.+... ..++...++. ..
T Consensus 58 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~ 134 (158)
T cd04151 58 PYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSELKDRT 134 (158)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCccccCCCc
Confidence 888889999999999999975 66543321 1222222221 12
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 135 ~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 135 WSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred EEEEEeeccCCCCHHHHHHHHh
Confidence 4699999999999999998875
No 98
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.72 E-value=4.9e-17 Score=125.99 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=82.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++|... .... ...|+......+.+.. ..+.+|||||+.+|.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~~~---------------~~pt~g~~~~~~~~~~------~~~~l~D~~G~~~~~ 58 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EIVT---------------TIPTIGFNVETVEYKN------ISFTVWDVGGQDKIR 58 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCcc---------------cCCCCCcceEEEEECC------EEEEEEECCCCHhHH
Confidence 6999999999999999999531 1100 0112222222233333 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC-----Cc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI-----DK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~-----~~ 153 (257)
..+..+++.+|++|+|+|+++ +|+.+... .+++...++. ..
T Consensus 59 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~ 135 (159)
T cd04150 59 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCC
Confidence 888899999999999999986 56543211 1222222222 12
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++++||++|.|+++++++|.
T Consensus 136 ~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 136 WYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred EEEEEeeCCCCCCHHHHHHHHh
Confidence 3478999999999999998775
No 99
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.72 E-value=4.2e-17 Score=126.53 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=83.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+...-. .........+.......+ ++....+.+|||||++.|.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~ 63 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYE--------------PQQLSTYALTLYKHNAKF----EGKTILVDFWDTAGQERFQ 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CCcCCceeeEEEEEEEEE----CCEEEEEEEEeCCCchhhh
Confidence 6999999999999999999753211 011111111111111112 3455789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEec
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 160 (257)
..+..+++.+|++++|+|+++ +|+......+ ...+.+.. ..+++++|
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~---~~~~~~~S 139 (161)
T cd04124 64 TMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQK-KFNFAEKH---NLPLYYVS 139 (161)
T ss_pred hhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHH-HHHHHHHc---CCeEEEEe
Confidence 999999999999999999986 4442211111 11122222 35799999
Q ss_pred ccccccccccccccCC
Q psy12244 161 HRRCFSCADCHRSLDS 176 (257)
Q Consensus 161 a~~g~gi~~l~~~i~~ 176 (257)
|++|.|++++++.+..
T Consensus 140 a~~~~gv~~l~~~l~~ 155 (161)
T cd04124 140 AADGTNVVKLFQDAIK 155 (161)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999887763
No 100
>KOG0078|consensus
Probab=99.72 E-value=6.4e-17 Score=126.38 Aligned_cols=136 Identities=18% Similarity=0.255 Sum_probs=100.1
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
|..-+.....+|+++|.++||||+|+-++....-. ......+.+++....+.. ++....+.+
T Consensus 4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~--------------~~~~sTiGIDFk~kti~l----~g~~i~lQi 65 (207)
T KOG0078|consen 4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFN--------------TSFISTIGIDFKIKTIEL----DGKKIKLQI 65 (207)
T ss_pred cccCCcceEEEEEEECCCCCchhHhhhhhhhccCc--------------CCccceEEEEEEEEEEEe----CCeEEEEEE
Confidence 33335678889999999999999999999653211 111233444444444444 556789999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHH
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQT 147 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~ 147 (257)
|||+|+++|...+..+++.|+++++|+|.+. +|+...+ ..+.-+.++.
T Consensus 66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~ 145 (207)
T KOG0078|consen 66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAR 145 (207)
T ss_pred EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHH
Confidence 9999999999999999999999999999998 6664422 2333445555
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+|. +|+++||++|.||++.|-.|..
T Consensus 146 e~G~---~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 146 EYGI---KFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred HhCC---eEEEccccCCCCHHHHHHHHHH
Confidence 5554 5999999999999998877763
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=4.3e-17 Score=128.99 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=87.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|..++|||||+++|.. +.... ...|+......+.+.. ..+.+|||||+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~---------------~~pt~g~~~~~~~~~~------~~~~i~D~~Gq 71 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT---------------TIPTIGFNVETVEYKN------ISFTVWDVGGQ 71 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCcc---------------ccCCcceeEEEEEECC------EEEEEEECCCC
Confidence 3446899999999999999999953 11100 1122222223344433 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCc-
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDK- 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~- 153 (257)
..|...+...++.+|++|+|+|+++ +|+.... ..+++.+.++...
T Consensus 72 ~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~l~l~~~ 148 (181)
T PLN00223 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (181)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC---CHHHHHHHhCcccc
Confidence 9999999999999999999999996 5543321 1234555555432
Q ss_pred ----cceEEecccccccccccccccC
Q psy12244 154 ----KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ----~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++++||++|+|+++++++|.
T Consensus 149 ~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 149 RQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CCCceEEEeccCCCCCCHHHHHHHHH
Confidence 2366899999999999998886
No 102
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=4.5e-17 Score=126.18 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=85.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceE-eceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV-KAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++++...-. .. .. .|. +.....+.. ++....+.||||||+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~------------~~--~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EK------------YD--PTIEDSYRKQIEV----DGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cc------------cC--CchhhhEEEEEEE----CCEEEEEEEEECCCccc
Confidence 57999999999999999999753210 00 00 111 111111222 34457889999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|.++ +|+.+.. ..+....+.+.++ .
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 138 (163)
T cd04136 62 FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG---C 138 (163)
T ss_pred cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC---C
Confidence 99888889999999999999886 5653321 1112223333333 5
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++++.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 139 PFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred eEEEecCCCCCCHHHHHHHHH
Confidence 799999999999999998775
No 103
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.72 E-value=5e-17 Score=127.81 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=86.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|+..... ....|.......+.+.. ..+.+|||||+.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~l~D~~G~~ 70 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVV-----------------HTSPTIGSNVEEIVYKN------IRFLMWDIGGQE 70 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-----------------CcCCccccceEEEEECC------eEEEEEECCCCH
Confidence 3568999999999999999999642110 01123333333444443 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHHHhCC---
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQTLFNI--- 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~~~~~--- 151 (257)
.|...+...++.+|++++|+|+++ +|+.+. +.+ ++.+.++.
T Consensus 71 ~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~----~i~~~l~~~~~ 146 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPA----EISESLGLTSI 146 (174)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHH----HHHHHhCcccc
Confidence 999888899999999999999986 454322 122 22233322
Q ss_pred --CccceEEecccccccccccccccC
Q psy12244 152 --DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 --~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 147 ~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 147 RDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred cCCceEEEecccCCCCCHHHHHHHHh
Confidence 224689999999999999998875
No 104
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.72 E-value=3.1e-17 Score=154.87 Aligned_cols=104 Identities=49% Similarity=0.786 Sum_probs=91.5
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
.++++||+++||+++|||||+++|++..+.+... +..+++|..+.|+++|+|++.....+.|.. ++..+.++|+||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--~~~~~~i~liDt 94 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--EGKEYLINLIDT 94 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe--cCCcEEEEEEcC
Confidence 4678999999999999999999999988877654 346779999999999999998887777743 344589999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||.+|...+..+++.+|++|+|+|+..
T Consensus 95 PG~~df~~~~~~~l~~~D~avlVvda~~ 122 (731)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVE 122 (731)
T ss_pred CCccChHHHHHHHHHhcCEEEEEEECCC
Confidence 9999999999999999999999999987
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.72 E-value=3.3e-17 Score=128.17 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=84.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++|..... . ....|+......+.+.. ..+.+|||||+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~---------------~~~~T~~~~~~~~~~~~------~~i~l~Dt~G~~~~~ 57 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--M---------------QPIPTIGFNVETVEYKN------LKFTIWDVGGKHKLR 57 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--C---------------CcCCcCceeEEEEEECC------EEEEEEECCCChhcc
Confidence 489999999999999999965211 0 11123322233344433 789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCC------
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNID------ 152 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~------ 152 (257)
..+...++.+|++++|+|+++ +|+.... ..+++++.+...
T Consensus 58 ~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~ 134 (169)
T cd04158 58 PLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL---SVEEMTELLSLHKLCCGR 134 (169)
T ss_pred hHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC---CHHHHHHHhCCccccCCC
Confidence 888889999999999999977 4543221 122222222211
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...++++||++|.|+++++++|.+
T Consensus 135 ~~~~~~~Sa~~g~gv~~~f~~l~~ 158 (169)
T cd04158 135 SWYIQGCDARSGMGLYEGLDWLSR 158 (169)
T ss_pred cEEEEeCcCCCCCCHHHHHHHHHH
Confidence 235789999999999999998863
No 106
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.71 E-value=2.9e-17 Score=128.66 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=86.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++++...- ..+..+.+..+.....+.+ .+....+.||||||+++|.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~~ 63 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--------------DKNYKATIGVDFEMERFEI----LGVPFSLQLWDTAGQERFK 63 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------------CCCCCCceeeEEEEEEEEE----CCEEEEEEEEeCCChHHHH
Confidence 589999999999999999975311 1111222222322233333 3445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH----HHHHHHHHHHhCCCcc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP----EACEEQLQTLFNIDKK 154 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~----~~~~~~~~~~~~~~~~ 154 (257)
..+...++.+|++++|+|+++ +|+.+.+. +.....+.+.++ .
T Consensus 64 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~---~ 140 (170)
T cd04108 64 CIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ---A 140 (170)
T ss_pred hhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC---C
Confidence 888889999999999999987 55533211 111112222222 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|++++++.|..
T Consensus 141 ~~~e~Sa~~g~~v~~lf~~l~~ 162 (170)
T cd04108 141 EYWSVSALSGENVREFFFRVAA 162 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988763
No 107
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.71 E-value=3e-17 Score=127.58 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=84.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++++|||||+++|++..-. .+..+.+..+.....+.. .+....+.+|||||++.|.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~~ 63 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV--------------SKYLPTIGIDYGVKKVSV----RNKEVRVNFFDLSGHPEYL 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEE----CCeEEEEEEEECCccHHHH
Confidence 6999999999999999999763211 111222333332333333 3445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
..+...++.+|++|+|+|.++ +|+.+.. ..+....+....
T Consensus 64 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 140 (168)
T cd04119 64 EVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK--- 140 (168)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc---
Confidence 888888999999999999985 3332110 011111122222
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+++++||++|.|++++++.|.
T Consensus 141 ~~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 141 GFKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 25699999999999999998775
No 108
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.71 E-value=5.8e-17 Score=126.47 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=87.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++++...-. . +...|.........+.. ++....+.+|||||+++|.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--------------~--~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~ 63 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE--------------K--KYVATLGVEVHPLDFHT--NRGKIRFNVWDTAGQEKFG 63 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------C--CCCCceeeEEEEEEEEE--CCEEEEEEEEECCCChhhc
Confidence 6999999999999999999742210 0 11123332233333332 3455789999999999988
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEec
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 160 (257)
......+..+|++|+|+|.++ +|+....... +..+.......+++++|
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~e~S 140 (166)
T cd00877 64 GLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKA---KQITFHRKKNLQYYEIS 140 (166)
T ss_pred cccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCH---HHHHHHHHcCCEEEEEe
Confidence 777778899999999999997 5654222111 11122223345799999
Q ss_pred ccccccccccccccCC
Q psy12244 161 HRRCFSCADCHRSLDS 176 (257)
Q Consensus 161 a~~g~gi~~l~~~i~~ 176 (257)
|++|.|+++++++|.+
T Consensus 141 a~~~~~v~~~f~~l~~ 156 (166)
T cd00877 141 AKSNYNFEKPFLWLAR 156 (166)
T ss_pred CCCCCChHHHHHHHHH
Confidence 9999999999998873
No 109
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.71 E-value=4.7e-17 Score=128.90 Aligned_cols=129 Identities=13% Similarity=0.187 Sum_probs=87.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++|+...- ..+..+.+..+.....+.. ++....+.+|||+|+++|.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--------------~~~~~~T~g~~~~~~~i~~----~~~~~~l~iwDt~G~~~~~ 63 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--------------DEDYIQTLGVNFMEKTISI----RGTEITFSIWDLGGQREFI 63 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--------------CCCCCCccceEEEEEEEEE----CCEEEEEEEEeCCCchhHH
Confidence 689999999999999999965321 1111122222222223333 3455789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCC----CHHHHHHHHHHHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNA----NPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~----~~~~~~~~~~~~~~~~~~~~ 156 (257)
..+..+++.+|++++|+|+++ +|+... ......++.+++......++
T Consensus 64 ~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (182)
T cd04128 64 NMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPL 143 (182)
T ss_pred HhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEE
Confidence 888889999999999999987 565311 11112222222221122579
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++||++|.|++++++++..
T Consensus 144 ~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 144 IFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred EEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998863
No 110
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.71 E-value=4.3e-17 Score=126.22 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=86.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|+...... ...+..+.+.....+.+ ++....+.+|||||+.+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~l~l~D~~G~~~~ 62 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE--------------DSQHTIGVEFGSKIIRV----GGKRVKLQIWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCceeeeEEEEEEEE----CCEEEEEEEEECcchHHH
Confidence 379999999999999999997532211 11122222222222322 334478999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
.......++.+|++++|+|+++ +|+.... ..+....+...++ .++
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~ 139 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG---LLF 139 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC---CEE
Confidence 9888889999999999999987 5553221 1111222222223 569
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++++.
T Consensus 140 ~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 140 LETSALTGENVEEAFLKCA 158 (161)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999988765
No 111
>PTZ00416 elongation factor 2; Provisional
Probab=99.71 E-value=6e-17 Score=154.44 Aligned_cols=106 Identities=48% Similarity=0.733 Sum_probs=90.0
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc----cCCccEEEE
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI----LDGEEYLLN 98 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----~~~~~~~~~ 98 (257)
.++++||+|+||+++|||||+++|++..+.+... ...+.+|..+.|+++|+|++.....+.|... ..+..+.++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 4678899999999999999999999988876544 3345689999999999999987777777520 012357899
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|+|||||.+|...+..+++.+|++|+|+|+..
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~ 127 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVE 127 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC
Confidence 99999999999999999999999999999998
No 112
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.71 E-value=7.8e-17 Score=131.01 Aligned_cols=127 Identities=11% Similarity=0.102 Sum_probs=88.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|++..- ..+..+.++.+.....+.+. ++....+.||||||++.|.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--------------~~~~~~T~~~d~~~~~i~~~---~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--------------GKSYKQTIGLDFFSKRVTLP---GNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--------------CCCCCCceeEEEEEEEEEeC---CCCEEEEEEEECCCcHHHH
Confidence 689999999999999999965211 11112233333333333332 2235789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
......++.+|++|+|+|+++ +|+.+.. ..+..+.+.+.++ .
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~---~ 141 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG---M 141 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC---C
Confidence 888889999999999999997 5553211 1122233333333 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|+|+++++++|..
T Consensus 142 ~~~~iSAktg~gv~~lf~~l~~ 163 (215)
T cd04109 142 ESCLVSAKTGDRVNLLFQQLAA 163 (215)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998874
No 113
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.71 E-value=8e-17 Score=124.89 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=84.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||++++++.... .. ..+... ......+.+ ++....+.+|||||+++|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~------------~~~t~~-~~~~~~~~~----~~~~~~~~i~Dt~G~~~~ 63 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TD------------YDPTIE-DSYTKQCEI----DGQWAILDILDTAGQEEF 63 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cc------------cCCCcc-ceEEEEEEE----CCEEEEEEEEECCCCcch
Confidence 58999999999999999999763211 00 011111 111111222 334478999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
...+...++.+|++++|+|+++ +|+..... ...++..+.......+++
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK-VSREEGQELARKLKIPYI 142 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce-ecHHHHHHHHHHcCCcEE
Confidence 9998899999999999999987 55533210 011122222211124799
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|++++++.|.
T Consensus 143 ~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 143 ETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EeeCCCCCCHHHHHHHHH
Confidence 999999999999988775
No 114
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=9.8e-17 Score=129.07 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=87.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+...-. ....+.+..+.....+.+. .+....+.||||||++.|.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~d~~~~~v~~~---~~~~~~l~l~Dt~G~~~~~ 64 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS--------------QHYKATIGVDFALKVIEWD---PNTVVRLQLWDIAGQERFG 64 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCceeEEEEEEEEEEC---CCCEEEEEEEECCCchhhh
Confidence 6999999999999999999753210 0111222222222233332 1455789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
..+...++.+|++|+|+|.++ +|+.+.. ..+..+++.+..+ .
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~ 142 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG--F 142 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC--C
Confidence 888999999999999999986 4543111 1112223333323 2
Q ss_pred cceEEecccccccccccccccCCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
.+++++||++|.|+++++++|...
T Consensus 143 ~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 143 IGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHH
Confidence 469999999999999999988743
No 115
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.70 E-value=1e-16 Score=124.47 Aligned_cols=124 Identities=18% Similarity=0.274 Sum_probs=84.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...... . ..+... +........ ++....+.+|||||+++|.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~--~------------~~~t~~-~~~~~~~~~----~~~~~~l~i~Dt~g~~~~~ 62 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD--D------------YDPTIE-DSYRKQIEI----DGEVCLLDILDTAGQEEFS 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--c------------cCCchh-hhEEEEEEE----CCEEEEEEEEECCCcccch
Confidence 69999999999999999997633210 0 000010 111111112 3445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
..+...++.+|++++|+|+++ +|+.... ..+....+.+.++ .++
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 139 (164)
T smart00173 63 AMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG---CPF 139 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC---CEE
Confidence 988889999999999999987 6654321 1122222333333 579
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 140 ~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 140 LETSAKERVNVDEAFYDLV 158 (164)
T ss_pred EEeecCCCCCHHHHHHHHH
Confidence 9999999999999998776
No 116
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.70 E-value=4.7e-17 Score=126.53 Aligned_cols=129 Identities=18% Similarity=0.239 Sum_probs=87.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+...-.. +..+..+.+.....+.. ++....+.+|||||+..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~ 64 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL--------------DSKSTIGVEFATRSIQI----DGKTIKAQIWDTAGQER 64 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceEEEEEEEEE----CCEEEEEEEEeCCChHH
Confidence 3689999999999999999997532111 11222233333333333 33446899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
|.......++.+|++|+|+|+.+ +|+.... ....++..........+++
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01868 65 YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPTEEAKAFAEKNGLSFI 143 (165)
T ss_pred HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-cCCHHHHHHHHHHcCCEEE
Confidence 98888888999999999999986 5553221 0011122222211235699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|++++++.+.
T Consensus 144 ~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 144 ETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999988765
No 117
>KOG0463|consensus
Probab=99.70 E-value=2.1e-18 Score=144.83 Aligned_cols=205 Identities=20% Similarity=0.234 Sum_probs=143.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCC--CcccccchHHHhhhCceEecee-------------------eEEEe
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG--SSQVLDSLQVEQERGITVKAQT-------------------ASLRY 86 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~--~~~~~d~~~~e~~~g~t~~~~~-------------------~~~~~ 86 (257)
..+|+++|++++|||||++.|. .+.+++.. ..+-+.++++|.+.|.|...+. ..+.|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLT--HgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLT--HGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred eEEEEEEecccCCcceeEeeee--ecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 3579999999999999999984 45554442 2233445666666666643322 23445
Q ss_pred ecccCCccEEEEEeCCCCCcccHHHHHHhh--hhcceEEEEEecCc--------------------------cCCCCCC-
Q psy12244 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSL--AACQGVVLLIDANQ--------------------------VDLKNAN- 137 (257)
Q Consensus 87 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~--~~aD~~ilVvd~~~--------------------------~D~~~~~- 137 (257)
-.+|++....++|||.+||++|.+.+..++ +..|+.+|++.++. +|.+.++
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANi 290 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANI 290 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHH
Confidence 555667778899999999999999999887 45899999999887 8998887
Q ss_pred HHHHHHHHHHHhCCC--------------------------ccceEEecccccccccccccccCCCcccCCCCCCCCCCC
Q psy12244 138 PEACEEQLQTLFNID--------------------------KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKAT 191 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~--------------------------~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~ 191 (257)
+++..+.+.+.+..+ .+|+|.+|..+|+|++.|..+|+.+++-..+ .+.
T Consensus 291 LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R~~~-----~E~ 365 (641)
T KOG0463|consen 291 LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLRRQL-----NEN 365 (641)
T ss_pred HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCccccc-----ccC
Confidence 566666666655321 2489999999999999999888865542221 223
Q ss_pred CCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCccccCChhh
Q psy12244 192 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQV 242 (257)
Q Consensus 192 ~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~~~d~~~~ 242 (257)
.+.++.+++.+-+..+|.+.+| ++....+..+..+. .|+....|++++
T Consensus 366 ~PAeFQIDD~Y~VpGVGTvvSG--T~L~GtIrLND~Ll-LGPd~~G~F~pI 413 (641)
T KOG0463|consen 366 DPAEFQIDDIYWVPGVGTVVSG--TLLSGTIRLNDILL-LGPDSNGDFMPI 413 (641)
T ss_pred CCcceeecceEecCCcceEeec--ceeeeeEEeccEEE-ecCCCCCCeeee
Confidence 3446677888888888888888 55555555444332 566666666554
No 118
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.70 E-value=1.2e-16 Score=125.98 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=88.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec------ccCCccEEEEEe
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS------ILDGEEYLLNLI 100 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~------~~~~~~~~~~li 100 (257)
...+|+++|.+|+|||||+++|....- ..+....+..+.....+.+.. ...+....+.||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF--------------NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLW 68 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--------------CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEE
Confidence 457899999999999999999965211 011112222222222233221 001345789999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQT 147 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~ 147 (257)
||||+++|...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~ 148 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD 148 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH
Confidence 999999999888999999999999999987 5553221 1122233333
Q ss_pred HhCCCccceEEecccccccccccccccC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++ .+++++||++|.|++++++.|.
T Consensus 149 ~~~---~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 149 KYG---IPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred HcC---CeEEEEeCCCCCCHHHHHHHHH
Confidence 333 4699999999999999998876
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=1.1e-16 Score=123.50 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=86.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||++++++.... ....|.......+.+.. ..+.+|||||+..+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~D~~G~~~~~ 57 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-----------------TTIPTIGFNVETVEYKN------VSFTVWDVGGQDKIR 57 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCCCCcCcceEEEEECC------EEEEEEECCCChhhH
Confidence 5899999999999999999764311 01112222233344433 789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~~~~~ 156 (257)
..+...+..+|++++|+|+.. +|+.... .++..+.+... ......++
T Consensus 58 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (158)
T cd00878 58 PLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHI 137 (158)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEE
Confidence 888888899999999999986 5654332 23333332221 12234579
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 138 ~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 138 QPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred EEeeCCCCCCHHHHHHHHh
Confidence 9999999999999988775
No 120
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=1.3e-16 Score=125.61 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=85.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..|+|||||+++|.. +... + .. .|+......+.+.. ..+.+|||||+.
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~--~~~~--------~-----~~--~t~~~~~~~~~~~~------~~l~l~D~~G~~ 68 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL--GESV--------T-----TI--PTIGFNVETVTYKN------ISFTVWDVGGQD 68 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCCC--------C-----cC--CccccceEEEEECC------EEEEEEECCCCh
Confidence 357899999999999999999953 1110 0 01 22222222333333 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCC---
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNID--- 152 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~--- 152 (257)
.|...+...++.+|++|+|+|+++ +|+.+... .+++.+.++..
T Consensus 69 ~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~ 145 (175)
T smart00177 69 KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK---AAEITEKLGLHSIR 145 (175)
T ss_pred hhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC---HHHHHHHhCccccC
Confidence 999988999999999999999986 45433211 12333333322
Q ss_pred --ccceEEecccccccccccccccC
Q psy12244 153 --KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 --~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...++++||++|.|+++++++|.
T Consensus 146 ~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 146 DRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred CCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 22467899999999999998876
No 121
>KOG0098|consensus
Probab=99.70 E-value=7.2e-17 Score=123.16 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=93.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....++.++|..|+|||+|+.+++.+.-... ....+.++.+...+.. +++..++++|||+||
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~--------------hd~TiGvefg~r~~~i----d~k~IKlqiwDtaGq 65 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPV--------------HDLTIGVEFGARMVTI----DGKQIKLQIWDTAGQ 65 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCcccc--------------ccceeeeeeceeEEEE----cCceEEEEEEecCCc
Confidence 3456899999999999999999976432211 1122333333333433 677899999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.|...+.++++.|-++|||+|.+. +|+...+ -++.-+++++..|
T Consensus 66 e~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg--- 142 (216)
T KOG0098|consen 66 ESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHG--- 142 (216)
T ss_pred HHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcC---
Confidence 9999999999999999999999998 6664332 1222233333334
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++++||++++|+++.|....
T Consensus 143 LifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 143 LIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred ceeehhhhhhhhhHHHHHHHHH
Confidence 4588999999999999887654
No 122
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=1.4e-16 Score=124.20 Aligned_cols=129 Identities=21% Similarity=0.274 Sum_probs=87.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+++|+++|++|+|||||+++|++....... ..++.+.......+.+.+ ..+.+|||||+.+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~------~~~~iiDtpG~~~ 62 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS-------------DIAGTTRDSIDVPFEYDG------KKYTLIDTAGIRR 62 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc-------------CCCCCccCceeeEEEECC------eeEEEEECCCCcc
Confidence 567999999999999999999764322211 123344443334444443 5688999999754
Q ss_pred cH-----------HHHHHhhhhcceEEEEEecCc--------------------------cCCCCCC---HHHHHHHHHH
Q psy12244 108 FS-----------NEVTRSLAACQGVVLLIDANQ--------------------------VDLKNAN---PEACEEQLQT 147 (257)
Q Consensus 108 ~~-----------~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~---~~~~~~~~~~ 147 (257)
.. ......+..+|++++|+|+.. +|+.... .+...+.+++
T Consensus 63 ~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (174)
T cd01895 63 KGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRR 142 (174)
T ss_pred ccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHh
Confidence 31 123445678999999999877 6664431 3344455555
Q ss_pred HhC-CCccceEEecccccccccccccccC
Q psy12244 148 LFN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 148 ~~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++ ....+++++||++|.|++++++.+.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 143 KLPFLDYAPIVFISALTGQGVDKLFDAID 171 (174)
T ss_pred hcccccCCceEEEeccCCCCHHHHHHHHH
Confidence 543 2346799999999999999987765
No 123
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=7.8e-17 Score=124.46 Aligned_cols=124 Identities=17% Similarity=0.258 Sum_probs=83.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEec-eeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKA-QTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++|++..-. .. .. .|... ....+.+ ++....+.+|||||+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~------------~~--~t~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 61 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DE------------YD--PTIEDSYRKQVVI----DGETCLLDILDTAGQEE 61 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CC------------cC--CcchheEEEEEEE----CCEEEEEEEEECCCCcc
Confidence 47999999999999999999753211 00 00 11110 1111222 33446788999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~ 155 (257)
|...+..+++.+|++++|+|.++ +|+.... ......++.+.++ .+
T Consensus 62 ~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~ 138 (162)
T cd04138 62 YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG---IP 138 (162)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC---Ce
Confidence 99999999999999999999886 5553321 1111222222223 46
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|+++++++|.
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988775
No 124
>KOG0080|consensus
Probab=99.69 E-value=3.6e-17 Score=121.77 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=89.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|.++|.+|+|||||+-+|+...- ..+....+.++.....+.. ++...++.+|||+|++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f--------------d~~~~~tIGvDFkvk~m~v----dg~~~KlaiWDTAGqE 71 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF--------------DDLHPTTIGVDFKVKVMQV----DGKRLKLAIWDTAGQE 71 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc--------------CccCCceeeeeEEEEEEEE----cCceEEEEEEeccchH
Confidence 357899999999999999999965321 1122222334444444433 6677999999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+|+..+.++++.|.++|+|+|.+. +|....+ ....++-.++..-..+-
T Consensus 72 rFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R-~V~reEG~kfAr~h~~L 150 (209)
T KOG0080|consen 72 RFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER-VVDREEGLKFARKHRCL 150 (209)
T ss_pred hhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc-cccHHHHHHHHHhhCcE
Confidence 999999999999999999999998 4432211 11111111222122345
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
|+++||++.+|++..|+.+.
T Consensus 151 FiE~SAkt~~~V~~~Feelv 170 (209)
T KOG0080|consen 151 FIECSAKTRENVQCCFEELV 170 (209)
T ss_pred EEEcchhhhccHHHHHHHHH
Confidence 89999999999987776654
No 125
>PLN03118 Rab family protein; Provisional
Probab=99.69 E-value=1.7e-16 Score=128.69 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=88.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|+..... +..+..+.+.....+.+ ++..+.+.||||||+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~G~ 72 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE---------------DLAPTIGVDFKIKQLTV----GGKRLKLTIWDTAGQ 72 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---------------CcCCCceeEEEEEEEEE----CCEEEEEEEEECCCc
Confidence 34578999999999999999999753211 01112222222222332 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCH--HHHHHHHHHHhCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANP--EACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~--~~~~~~~~~~~~~ 151 (257)
++|...+..+++.+|++|+|+|+++ +|+..... .+....+....
T Consensus 73 ~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~-- 150 (211)
T PLN03118 73 ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEH-- 150 (211)
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc--
Confidence 9999988999999999999999987 44432110 11111222222
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|++++++.|..
T Consensus 151 -~~~~~e~SAk~~~~v~~l~~~l~~ 174 (211)
T PLN03118 151 -GCLFLECSAKTRENVEQCFEELAL 174 (211)
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 346899999999999999988874
No 126
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=1.7e-16 Score=125.74 Aligned_cols=124 Identities=15% Similarity=0.189 Sum_probs=85.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||++++.. +... . .. .|.......+.+.. ..+.+|||||+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~--~~~~--------~-----~~--~T~~~~~~~~~~~~------~~~~l~D~~G~ 71 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKL--GEVV--------T-----TI--PTIGFNVETVEYKN------LKFTMWDVGGQ 71 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCcc--------c-----cC--CccccceEEEEECC------EEEEEEECCCC
Confidence 3446899999999999999999943 1110 0 01 12222222333333 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCc-
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDK- 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~- 153 (257)
+.+...+...++.+|++|+|+|+++ .|+.+... .+++...++...
T Consensus 72 ~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~l~~~~~ 148 (182)
T PTZ00133 72 DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS---TTEVTEKLGLHSV 148 (182)
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC---HHHHHHHhCCCcc
Confidence 9999989999999999999999976 45433211 123333343321
Q ss_pred ----cceEEecccccccccccccccC
Q psy12244 154 ----KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ----~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 149 ~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 149 RQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred cCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 2467899999999999998876
No 127
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=1.7e-16 Score=128.60 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=89.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|+...-.. ...+.++.+.....+.+. ++....+.+|||||++.|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~--------------~~~~ti~~d~~~~~i~~~---~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE--------------VSDPTVGVDFFSRLIEIE---PGVRIKLQLWDTAGQERF 65 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCceeceEEEEEEEEEC---CCCEEEEEEEeCCcchhH
Confidence 679999999999999999997532110 011222223222223322 244578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
.......++.+|++++|+|.++ +|+.... ..+..+++.+.++ .+
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~---~~ 142 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG---MK 142 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC---CE
Confidence 9888889999999999999987 5553321 1222333444333 56
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++++.|..
T Consensus 143 ~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 143 YIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999998874
No 128
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=8.4e-17 Score=143.91 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=94.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+|+|++...... ....|.|.+.....+.+.+ ..+.+|||||+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-------------~~~~gtt~~~~~~~~~~~~------~~~~liDT~G~ 230 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-------------SDIAGTTRDSIDIPFERNG------KKYLLIDTAGI 230 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec-------------CCCCCceECcEeEEEEECC------cEEEEEECCCc
Confidence 3457899999999999999999986443322 1245677766555665554 57899999998
Q ss_pred cccHH-----------HHHHhhhhcceEEEEEecCc--------------------------cCCCC--CCHHHHHHHHH
Q psy12244 106 VDFSN-----------EVTRSLAACQGVVLLIDANQ--------------------------VDLKN--ANPEACEEQLQ 146 (257)
Q Consensus 106 ~~~~~-----------~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~--~~~~~~~~~~~ 146 (257)
.++.. ....+++.+|++|+|+|+.. +|+.+ ...++..++++
T Consensus 231 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~ 310 (429)
T TIGR03594 231 RRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELR 310 (429)
T ss_pred cccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHH
Confidence 65321 23456789999999999997 77752 12345555565
Q ss_pred HHhC-CCccceEEecccccccccccccccC
Q psy12244 147 TLFN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 147 ~~~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+. ....+++++||++|.|++++++.+.
T Consensus 311 ~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 311 RKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred HhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 5543 3457899999999999999998876
No 129
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.69 E-value=1.5e-16 Score=126.65 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=86.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|+.|+|||||+++|...... ....|.......+.+.+ ..+.+|||||+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-----------------~~~~T~~~~~~~i~~~~------~~~~l~D~~G~~ 74 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-----------------QHVPTLHPTSEELTIGN------IKFKTFDLGGHE 74 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-----------------ccCCccCcceEEEEECC------EEEEEEECCCCH
Confidence 4578999999999999999999642210 01112222333444444 688999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC----
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI---- 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~---- 151 (257)
++...+..+++.+|++++|+|+.+ +|+..... .+++++.++.
T Consensus 75 ~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~---~~~~~~~~~~~~~~ 151 (190)
T cd00879 75 QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVS---EEELRQALGLYGTT 151 (190)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcC---HHHHHHHhCccccc
Confidence 998888888999999999999976 66543211 2233333321
Q ss_pred ------------CccceEEecccccccccccccccC
Q psy12244 152 ------------DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ------------~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|+|+++++++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred ccccccccccCceeEEEEEeEecCCCChHHHHHHHH
Confidence 123589999999999999998876
No 130
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.69 E-value=1.4e-16 Score=124.59 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=85.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+++|+...- ..+..+.++.+.....+.+ ++....+.||||||++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF--------------DTQLFHTIGVEFLNKDLEV----DGHFVTLQIWDTAGQE 65 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC--------------CcCcCCceeeEEEEEEEEE----CCeEEEEEEEeCCChH
Confidence 457899999999999999999964211 0111112222221222222 4455788999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCCHHHHHHHHHHHh-CC
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNANPEACEEQLQTLF-NI 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~~~~~~~~~~~~~-~~ 151 (257)
+|...+...++.+|++++|+|.++ +|+.+.. ...++++++. ..
T Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~ 143 (170)
T cd04116 66 RFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ--VSTEEAQAWCREN 143 (170)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc--cCHHHHHHHHHHC
Confidence 999988899999999999999886 4442111 1112222222 12
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+.++++.+.
T Consensus 144 ~~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 144 GDYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 234689999999999999988765
No 131
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.69 E-value=1.1e-16 Score=128.51 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=88.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+++|+...-. .+..+.+..+.....+.+ .+....+.||||||++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS--------------GSYITTIGVDFKIRTVEI----NGERVKLQIWDTAGQE 66 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--------------CCcCccccceeEEEEEEE----CCEEEEEEEEeCCCch
Confidence 3578999999999999999999653210 001111222222222222 3344678999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
.|...+...++.+|++++|+|+++ +|+.+.. ..+....+...++ .+
T Consensus 67 ~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~---~~ 143 (199)
T cd04110 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG---IS 143 (199)
T ss_pred hHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---CE
Confidence 999888899999999999999987 6664321 1111222222223 56
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|+++++++|..
T Consensus 144 ~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 144 LFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 999999999999999998864
No 132
>KOG0464|consensus
Probab=99.69 E-value=6.9e-17 Score=137.33 Aligned_cols=138 Identities=38% Similarity=0.584 Sum_probs=120.0
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
+.+..+++||+|+.|.++||||...++++..|.+... ++.++.|.+..|+++|+|+......+.|++ +.+
T Consensus 31 ~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg------~ri 104 (753)
T KOG0464|consen 31 NPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG------HRI 104 (753)
T ss_pred CCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc------ceE
Confidence 4455789999999999999999999999999888655 778899999999999999999999999998 999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++||||||.+|.-++.+.++..|+++.|+|++. ||+..++++...+.+++.++.
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 999999999999999999999999999999997 788788888888888888876
Q ss_pred Cccc-eEEecccccc
Q psy12244 152 DKKS-VLRIWHRRCF 165 (257)
Q Consensus 152 ~~~~-~i~iSa~~g~ 165 (257)
.... .+|+--..|.
T Consensus 185 k~l~l~lpi~eak~f 199 (753)
T KOG0464|consen 185 KALKLQLPIGEAKGF 199 (753)
T ss_pred ceEEEEecccccccc
Confidence 5432 3566654444
No 133
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.68 E-value=4.3e-17 Score=149.60 Aligned_cols=183 Identities=21% Similarity=0.211 Sum_probs=106.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc--CCcc---------
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL--DGEE--------- 94 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--~~~~--------- 94 (257)
.|++.|+++||+|+|||||+++|.+..... ....++|...+...+.+.... .+..
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~--------------~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAA--------------KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLK 69 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc--------------CCCCceEEeeceeeccccccccccceeccccccccc
Confidence 466789999999999999999996532211 111234433332222221100 0000
Q ss_pred -EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCC-CCH--------
Q psy12244 95 -YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKN-ANP-------- 138 (257)
Q Consensus 95 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~-~~~-------- 138 (257)
..++|||||||++|...+..+++.+|++++|+|+++ +|+.. +..
T Consensus 70 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 70 IPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred cCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHH
Confidence 127899999999999999999999999999999985 67642 110
Q ss_pred ------HHHH-------HHHHHHh---CC------------CccceEEecccccccccccccccCCCcccCCCCCC-CCC
Q psy12244 139 ------EACE-------EQLQTLF---NI------------DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKP-DSK 189 (257)
Q Consensus 139 ------~~~~-------~~~~~~~---~~------------~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~-~~~ 189 (257)
.... .++...+ ++ ...+++++||++|+|+++|++.+..... ..++.+ ...
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~-~~l~~~l~~~ 228 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ-RYLEERLKID 228 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH-HHHHHhhccC
Confidence 0011 1111111 21 2357999999999999998877642110 001000 011
Q ss_pred CCCCCCcchh-----hhcceeeEeeecccchhhHHHHHH
Q psy12244 190 ATPYEDIPIA-----RIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 190 ~~~~~~~~~~-----~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
...+...++. +..+.+..|.+.+|....++.++.
T Consensus 229 ~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~ 267 (586)
T PRK04004 229 VEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVV 267 (586)
T ss_pred CCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEE
Confidence 1112233322 234566777788887777776644
No 134
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=1.3e-16 Score=123.50 Aligned_cols=115 Identities=19% Similarity=0.283 Sum_probs=78.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc--
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV-- 106 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-- 106 (257)
++|+++|++|+|||||+|+|.+... . ...+..+.|.. . .+|||||+.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~---------------------~--~~~~~~v~~~~------~--~~iDtpG~~~~ 50 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT---------------------L--ARKTQAVEFND------K--GDIDTPGEYFS 50 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc---------------------c--CccceEEEECC------C--CcccCCccccC
Confidence 4799999999999999999854210 0 01122233332 1 269999973
Q ss_pred --ccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEec
Q psy12244 107 --DFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 107 --~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 160 (257)
++...+..++..+|++++|+|++. +|+.+.+.+...+.+.+ ++. ..|++++|
T Consensus 51 ~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~-~~~-~~p~~~~S 128 (158)
T PRK15467 51 HPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLE-TGF-EEPIFELN 128 (158)
T ss_pred CHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcccHHHHHHHHHH-cCC-CCCEEEEE
Confidence 455555667889999999999986 56544444333333332 333 25899999
Q ss_pred ccccccccccccccCC
Q psy12244 161 HRRCFSCADCHRSLDS 176 (257)
Q Consensus 161 a~~g~gi~~l~~~i~~ 176 (257)
|++|+|++++++++.+
T Consensus 129 a~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 129 SHDPQSVQQLVDYLAS 144 (158)
T ss_pred CCCccCHHHHHHHHHH
Confidence 9999999999998874
No 135
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.68 E-value=1.7e-16 Score=123.96 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=85.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+....... .....+.+.....+.. .+....+.+|||||+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 65 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGARMITI----DGKQIKLQIWDTAGQES 65 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEEEE----CCEEEEEEEEECCCcHH
Confidence 46899999999999999999975321110 0111122222222333 33346899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
|.......++.+|++++|+|+++ +|+.... ....++..........+++
T Consensus 66 ~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 66 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR-EVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHHHHHHHHHcCCEEE
Confidence 98888889999999999999987 5554211 0011122222211235699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|+++++..+.
T Consensus 145 e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 145 ETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 999999999999987765
No 136
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.68 E-value=2.6e-16 Score=124.76 Aligned_cols=128 Identities=15% Similarity=0.090 Sum_probs=84.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++++..... . .. .|............ .+.....+.+|||||+++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~----------~-----~~--~t~~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV----------N-----TV--PTKGFNTEKIKVSL-GNSKGITFHFWDVGGQEK 64 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC----------C-----cC--CccccceeEEEeec-cCCCceEEEEEECCCcHh
Confidence 357999999999999999999652211 0 01 11111111122210 022347899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC------
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN------ 150 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~------ 150 (257)
|...+...++.+|++++|+|+++ +|+..... .+++...++
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~ 141 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS---VSEVEKLLALHELSA 141 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC---HHHHHHHhCccccCC
Confidence 98888888999999999999986 45432211 112222221
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|++++++.|..
T Consensus 142 ~~~~~~~~~SA~~~~gi~~l~~~l~~ 167 (183)
T cd04152 142 STPWHVQPACAIIGEGLQEGLEKLYE 167 (183)
T ss_pred CCceEEEEeecccCCCHHHHHHHHHH
Confidence 11246899999999999999988763
No 137
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.68 E-value=2.8e-16 Score=121.91 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=85.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++++|||||+++++... .. .+..+.+..+.....+.. .+....+.+|||||+.+|.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~--~~------------~~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~g~~~~~ 63 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE--FH------------SSHISTIGVDFKMKTIEV----DGIKVRIQIWDTAGQERYQ 63 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CC------------CCCCCceeeEEEEEEEEE----CCEEEEEEEEeCCCcHhHH
Confidence 68999999999999999996421 10 011112222222222332 3445789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
..+...++.+|++++|+|.++ .|+.+.. ..+....+.+.++ ++++
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~---~~~~ 140 (161)
T cd04117 64 TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG---MDFF 140 (161)
T ss_pred hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC---CEEE
Confidence 888889999999999999887 5553322 1222333333333 5799
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|+++++++|.
T Consensus 141 e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 141 ETSACTNSNIKESFTRLT 158 (161)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 999999999999998775
No 138
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.68 E-value=2e-16 Score=122.32 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=82.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|....-.. ...|.......+.+. ....+.+|||||+..+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~-----~~~~l~i~D~~G~~~~~ 58 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-----------------TIPTVGFNVEMLQLE-----KHLSLTVWDVGGQEKMR 58 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-----------------ccCccCcceEEEEeC-----CceEEEEEECCCCHhHH
Confidence 48999999999999999996532110 011222222222221 23689999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHH--HHhCCCccc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQ--TLFNIDKKS 155 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~--~~~~~~~~~ 155 (257)
..+...+..+|++++|+|+.+ +|+... ..++....+. ........+
T Consensus 59 ~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 138 (160)
T cd04156 59 TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWY 138 (160)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEE
Confidence 888888999999999999977 454321 1222222211 111112346
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|+|++++++.|.
T Consensus 139 ~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 139 VQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred EEecccccCCChHHHHHHHh
Confidence 89999999999999998775
No 139
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.68 E-value=3.3e-16 Score=121.68 Aligned_cols=124 Identities=17% Similarity=0.269 Sum_probs=85.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++++.. ..... ...|+... ...+.+ .+..+.+.+|||||++.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~~--------------~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVEK--------------YDPTIEDSYRKQVEV----DGQQCMLEILDTAGTEQ 61 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCcc--------------cCCcchheEEEEEEE----CCEEEEEEEEECCCccc
Confidence 47999999999999999999742 11110 00111111 112222 34457889999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|.++ +|+.... .....+++.+.++ .
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 138 (164)
T cd04175 62 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG---C 138 (164)
T ss_pred chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC---C
Confidence 99999999999999999999876 5554321 1111233433333 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++++.
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHH
Confidence 799999999999999988775
No 140
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.68 E-value=1.4e-16 Score=129.58 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=58.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+++|||||+++|+...- . +...|+........+.. +.+.||||||++.|.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--------------~---~~~~Tig~~~~~~~~~~------~~l~iwDt~G~e~~~ 58 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--------------K---DTVSTVGGAFYLKQWGP------YNISIWDTAGREQFH 58 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--------------C---CCCCccceEEEEEEeeE------EEEEEEeCCCcccch
Confidence 689999999999999999965221 0 01122222222222322 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.....+++.+|++|+|+|+++
T Consensus 59 ~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 59 GLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred hhHHHHhccCCEEEEEEECCC
Confidence 988889999999999999998
No 141
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=3e-16 Score=125.26 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=86.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+....... +....+..+.....+.+ ++....+.||||||+.+|.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~ 64 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG-------------NFIATVGIDFRNKVVTV----DGVKVKLQIWDTAGQERFR 64 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc-------------CcCCcccceeEEEEEEE----CCEEEEEEEEeCCCcHHHH
Confidence 699999999999999999965321110 00111111211112222 3445789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++|+|+|++. +|+.... .....+.+...++ .+++
T Consensus 65 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~---~~~~ 141 (191)
T cd04112 65 SVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG---VPFM 141 (191)
T ss_pred HhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC---CeEE
Confidence 888888999999999999986 5653211 1122233333333 4799
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
++||++|.|+++++++|...
T Consensus 142 e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 142 ETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988743
No 142
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=1.2e-16 Score=122.73 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=81.7
Q ss_pred EEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH-
Q psy12244 32 SIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN- 110 (257)
Q Consensus 32 ~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~- 110 (257)
+++|++|+|||||+++|+....... +...+.|.+.......+.+ +.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~------~~~~i~DtpG~~~~~~~ 61 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-------------EDTPGVTRDRIYGEAEWGG------REFILIDTGGIEPDDEG 61 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-------------cCCCCceeCceeEEEEECC------eEEEEEECCCCCCchhH
Confidence 5899999999999999976422111 1133455554444555544 7899999999988543
Q ss_pred -------HHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 111 -------EVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 111 -------~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
.+...++.+|++++|+|+.. +|+...+. ..+.+.. ++ ..+++
T Consensus 62 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~-~~--~~~~~ 136 (157)
T cd01894 62 ISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEED--EAAEFYS-LG--FGEPI 136 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHH--HHHHHHh-cC--CCCeE
Confidence 44566788999999999975 45543221 1122221 23 23689
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++|+++|.|+++++++|.
T Consensus 137 ~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 137 PISAEHGRGIGDLLDAIL 154 (157)
T ss_pred EEecccCCCHHHHHHHHH
Confidence 999999999999988775
No 143
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=3e-16 Score=122.59 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=85.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...-.. .....+..+.....+.+ .+....+.+|||||+..|.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~~~D~~g~~~~~ 63 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN--------------QYKATIGADFLTKEVTV----DDKLVTLQIWDTAGQERFQ 63 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--------------CcCCccceEEEEEEEEE----CCEEEEEEEEeCCChHHHH
Confidence 69999999999999999996532110 01111222222222333 3344778899999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
..+...++.+|++|+|+|+++ +|+...+ ..+..+.+.+..+ .
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~ 141 (172)
T cd01862 64 SLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG--N 141 (172)
T ss_pred hHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcC--C
Confidence 888899999999999999975 4553211 1122222222222 3
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++++..
T Consensus 142 ~~~~~~Sa~~~~gv~~l~~~i~~ 164 (172)
T cd01862 142 IPYFETSAKEAINVEQAFETIAR 164 (172)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988764
No 144
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.68 E-value=1.8e-16 Score=122.87 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=85.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|++..-.. ...+..........+.+ ++....+.+|||||+++|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~----~~~~~~~~i~D~~G~~~~ 63 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNL----DDTTVKFEIWDTAGQERY 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEE----CCEEEEEEEEeCCchHHH
Confidence 479999999999999999997643211 00111111111222333 334578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~~~~ 155 (257)
.......++.+|++++|+|+++ +|+.... .++ ...+...++ .+
T Consensus 64 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~---~~ 139 (163)
T cd01860 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEE-AQEYADENG---LL 139 (163)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHH-HHHHHHHcC---CE
Confidence 8888888899999999999987 5554211 122 222222223 56
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|+++++++|.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 140 FFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999999999999988775
No 145
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.68 E-value=1.4e-16 Score=124.23 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=77.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|++|+|||||+++|++..... ....+.|.......+.+.. ..++||||||+.+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~------~~~~i~Dt~G~~~~ 60 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--------------APYPFTTKSLFVGHFDYKY------LRWQVIDTPGLLDR 60 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc--------------CCCCCcccceeEEEEccCc------eEEEEEECCCcCCc
Confidence 579999999999999999997632210 1112334443333343333 78999999998431
Q ss_pred H--------HHHHHh-hhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 109 S--------NEVTRS-LAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 109 ~--------~~~~~~-~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
. ...... ...+|++++|+|++. +|+.... ... ...+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~-~~~~~ 137 (168)
T cd01897 61 PLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE--DLS-EIEEE 137 (168)
T ss_pred cccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh--hHH-HHHHh
Confidence 0 111112 234689999999974 3432211 111 12233
Q ss_pred hCCCccceEEecccccccccccccccC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
......+++++||++|.|++++++++.
T Consensus 138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (168)
T cd01897 138 EELEGEEVLKISTLTEEGVDEVKNKAC 164 (168)
T ss_pred hhhccCceEEEEecccCCHHHHHHHHH
Confidence 333446799999999999999998776
No 146
>PTZ00369 Ras-like protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=126.85 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=85.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEecee-eEEEeecccCCccEEEEEeCCCCCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQT-ASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+|+++|.+|+|||||++++++.... . +.. .|....+ ..+.+ ++....+.+|||||++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~------------~~~--~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--D------------EYD--PTIEDSYRKQCVI----DEETCLLDILDTAGQE 64 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--c------------CcC--CchhhEEEEEEEE----CCEEEEEEEEeCCCCc
Confidence 468999999999999999999753211 0 000 1111111 11122 3445789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH--HHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP--EACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~--~~~~~~~~~~~~~~~ 153 (257)
+|...+..+++.+|++++|+|+++ +|+.+... ......+.+.++
T Consensus 65 ~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~--- 141 (189)
T PTZ00369 65 EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG--- 141 (189)
T ss_pred cchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC---
Confidence 999999999999999999999987 45432210 111122222223
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|.+
T Consensus 142 ~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 142 IPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 147
>PLN03110 Rab GTPase; Provisional
Probab=99.68 E-value=3.8e-16 Score=127.03 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|+.|+|||||+++|++..-. .+..+.+..+.....+.+ ++....+.||||||++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~--------------~~~~~t~g~~~~~~~v~~----~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC--------------LESKSTIGVEFATRTLQV----EGKTVKAQIWDTAGQE 72 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCceeEEEEEEEEEE----CCEEEEEEEEECCCcH
Confidence 4578999999999999999999653211 111222223332233333 3455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+...++.+|++|+|+|.++ +|+.... ..+....+.... ..
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~---~~ 149 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE---GL 149 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHc---CC
Confidence 999988889999999999999986 4543221 122233333322 35
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|++++++.|..
T Consensus 150 ~~~e~SA~~g~~v~~lf~~l~~ 171 (216)
T PLN03110 150 SFLETSALEATNVEKAFQTILL 171 (216)
T ss_pred EEEEEeCCCCCCHHHHHHHHHH
Confidence 7999999999999999988863
No 148
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=3.6e-16 Score=127.43 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=88.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|..|+|||||+++++...- ..+.. .|+........+.. ++....+.+|||||+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f--------------~~~~~--~tig~~~~~~~~~~--~~~~~~l~i~Dt~G~ 72 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYE--PTIGVEVHPLDFFT--NCGKIRFYCWDTAGQ 72 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC--------------CCccC--CccceeEEEEEEEE--CCeEEEEEEEECCCc
Confidence 4557899999999999999999864221 11111 22222222222222 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCH-HHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANP-EACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~-~~~~~~~~~~~~~~~~~ 155 (257)
++|...+..+++.+|++|+|+|.++ +|+..... .+.. ++.+ ....+
T Consensus 73 ~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~---~~~~~ 148 (219)
T PLN03071 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHR---KKNLQ 148 (219)
T ss_pred hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHH---hcCCE
Confidence 9998888888999999999999998 55532111 1111 2222 22356
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++|++|..
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHH
Confidence 999999999999999988874
No 149
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.67 E-value=1.5e-16 Score=118.87 Aligned_cols=113 Identities=25% Similarity=0.312 Sum_probs=82.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC--
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH-- 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~-- 105 (257)
+++|.++|++++|||||+++|.+.... ...|.. +.|. =.+|||||-
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~~~------------------~~KTq~-----i~~~---------~~~IDTPGEyi 48 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEEIR------------------YKKTQA-----IEYY---------DNTIDTPGEYI 48 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCCCC------------------cCccce-----eEec---------ccEEECChhhe
Confidence 367999999999999999999542211 111211 2222 236999993
Q ss_pred --cccHHHHHHhhhhcceEEEEEecCc-----------------------cCCC--CCCHHHHHHHHHHHhCCCccceEE
Q psy12244 106 --VDFSNEVTRSLAACQGVVLLIDANQ-----------------------VDLK--NANPEACEEQLQTLFNIDKKSVLR 158 (257)
Q Consensus 106 --~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------~D~~--~~~~~~~~~~~~~~~~~~~~~~i~ 158 (257)
..|..........||.+++|.|+++ +|+. +++.+...+.++. .|.. ++|+
T Consensus 49 E~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~-aG~~--~if~ 125 (143)
T PF10662_consen 49 ENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKN-AGVK--EIFE 125 (143)
T ss_pred eCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHH-cCCC--CeEE
Confidence 4477777778889999999999998 8887 4555555555554 3544 5799
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+|+.+|+|+++|.++|.
T Consensus 126 vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 126 VSAVTGEGIEELKDYLE 142 (143)
T ss_pred EECCCCcCHHHHHHHHh
Confidence 99999999999998875
No 150
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.67 E-value=2.1e-16 Score=123.06 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=82.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++++...- .. ....|....+. ..... +.....+.+|||||+++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f--~~--------------~~~~t~~~~~~-~~~~~--~~~~~~l~i~Dt~G~~~~ 62 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF--RE--------------SYIPTIEDTYR-QVISC--SKNICTLQITDTTGSHQF 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CC--------------CcCCcchheEE-EEEEE--CCEEEEEEEEECCCCCcc
Confidence 4699999999999999999975321 00 00011111111 11111 234478999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCC-H-HHHHHHHHHHhCCCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNAN-P-EACEEQLQTLFNIDK 153 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~-~-~~~~~~~~~~~~~~~ 153 (257)
......+++.+|++++|+|.++ +|+.... . ..........+ .
T Consensus 63 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---~ 139 (165)
T cd04140 63 PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEW---N 139 (165)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHh---C
Confidence 9888888999999999999987 4543211 1 11111122212 2
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||++|.|+++++++|..
T Consensus 140 ~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 140 CAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CcEEEeecCCCCCHHHHHHHHHh
Confidence 46899999999999999988763
No 151
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.67 E-value=3.7e-16 Score=119.82 Aligned_cols=127 Identities=18% Similarity=0.262 Sum_probs=85.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++++|||||+++|++...... ..+..+.+.....+.. ++....+.+||+||+..+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~ 63 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEI----DGKTVKLQIWDTAGQERFR 63 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEE----CCEEEEEEEEecCChHHHH
Confidence 699999999999999999975332211 1112222222222222 2344789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
......++.+|++++|+|+.+ +|+.... ....+++.+.......+++++
T Consensus 64 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (159)
T cd00154 64 SITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR-QVSTEEAQQFAKENGLLFFET 142 (159)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc-cccHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999987 5553111 111222222222234579999
Q ss_pred cccccccccccccccC
Q psy12244 160 WHRRCFSCADCHRSLD 175 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~ 175 (257)
||++|.|+++++++|.
T Consensus 143 sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 143 SAKTGENVEELFQSLA 158 (159)
T ss_pred ecCCCCCHHHHHHHHh
Confidence 9999999999987764
No 152
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=3.6e-16 Score=121.12 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=86.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...-. ....+..+.+.....+.+ .+....+.+|||||+..|.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~G~~~~~ 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS--------------EQYKSTIGVDFKTKTIEV----DGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEE----CCEEEEEEEEECCChHHHH
Confidence 6999999999999999999753211 111122233322233333 3344689999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++++|+|+++ +|+.... ..+..+.+.+.++ .+++
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~ 140 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHG---LPFF 140 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcC---CeEE
Confidence 888889999999999999987 5553311 1122222333333 4699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|++++++.|.
T Consensus 141 e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 141 ETSAKTNTNVEEAFEELA 158 (164)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 999999999999988776
No 153
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=7.2e-16 Score=120.25 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=88.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
...++|+++|++|+|||||+++|+...-.. .....++.+.....+.+ ++....+.+|||||+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~~~D~~g~ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP--------------GQGATIGVDFMIKTVEI----KGEKIKLQIWDTAGQ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCceeeEEEEEEEEE----CCEEEEEEEEECCCc
Confidence 456899999999999999999996422110 01112222232333333 344467899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
..|...+...+..+|++++|+|+.+ +|+.... .....+.+.+.. .
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~---~ 143 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQ---D 143 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc---C
Confidence 9999888889999999999999886 5653221 122223333322 2
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|++++++.|.
T Consensus 144 ~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 144 MYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred CeEEEeeCCCCCCHHHHHHHHH
Confidence 5689999999999999988765
No 154
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.67 E-value=2e-16 Score=122.42 Aligned_cols=125 Identities=20% Similarity=0.237 Sum_probs=84.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...... +..+..+.+.....+.+ .+....+.+|||||+..|.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~ 63 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP--------------DLAATIGVDFKVKTLTV----DGKKVKLAIWDTAGQERFR 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc--------------ccCCcccceEEEEEEEE----CCEEEEEEEEECCCchhhh
Confidence 68999999999999999997532211 01111222222222222 2344789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++++|+|+++ +|+.... ..+....+... ...+++
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~ 140 (161)
T cd01863 64 TLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK---HNMLFI 140 (161)
T ss_pred hhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH---cCCEEE
Confidence 888888899999999999886 5654221 11112222222 245699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|++++++.+.
T Consensus 141 ~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 141 ETSAKTRDGVQQAFEELV 158 (161)
T ss_pred EEecCCCCCHHHHHHHHH
Confidence 999999999999887664
No 155
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=4.4e-16 Score=139.50 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=93.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+|+|++....+. ...+|.|.+.....+.+.+ ..+.+|||||+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~-------------~~~~gtt~~~~~~~~~~~~------~~~~lvDT~G~~ 232 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIV-------------SDIAGTTRDSIDTPFERDG------QKYTLIDTAGIR 232 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceee-------------cCCCCceEEEEEEEEEECC------eeEEEEECCCCC
Confidence 467899999999999999999987543332 2245677776555555554 678999999975
Q ss_pred cc----------H-HHHHHhhhhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 107 DF----------S-NEVTRSLAACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 107 ~~----------~-~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
+. . ..+..+++.+|++|+|+|+.. +|+.... .++..+++...
T Consensus 233 ~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~ 312 (435)
T PRK00093 233 RKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRR 312 (435)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHh
Confidence 42 1 223457789999999999997 6664321 33444555554
Q ss_pred hC-CCccceEEecccccccccccccccC
Q psy12244 149 FN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 149 ~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+. ....|++++||++|.|++++++.+.
T Consensus 313 l~~~~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 313 LPFLDYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred cccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence 42 3456899999999999999988775
No 156
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.67 E-value=4e-16 Score=123.78 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=86.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|....-.. ...|.......+.+.+ ..+.+|||||+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-----------------~~~t~~~~~~~~~~~~------~~~~~~D~~G~ 71 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-----------------HQPTQHPTSEELAIGN------IKFTTFDLGGH 71 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-----------------cCCccccceEEEEECC------EEEEEEECCCC
Confidence 455789999999999999999996522110 0112222223333333 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC---
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI--- 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~--- 151 (257)
..+...+..++..+|++++|+|+++ +|+.... ..+++.+.++.
T Consensus 72 ~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~l~l~~~ 148 (184)
T smart00178 72 QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA---SEDELRYALGLTNT 148 (184)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC---CHHHHHHHcCCCcc
Confidence 9998888899999999999999976 4543221 12233333322
Q ss_pred ---------CccceEEecccccccccccccccC
Q psy12244 152 ---------DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ---------~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....++++||++|.|+++++++|.
T Consensus 149 ~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 149 TGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred cccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 233589999999999999998875
No 157
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.66 E-value=3.7e-16 Score=147.24 Aligned_cols=104 Identities=47% Similarity=0.742 Sum_probs=86.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
.++.+||+++||.++|||||+++|++..+.+... ...+.+|..+.|+++|+|+........+.. +...++++||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~--~~~~~~i~liDT 93 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY--EGNEYLINLIDT 93 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee--cCCceEEEEEeC
Confidence 3568999999999999999999999987776543 334568889999999999987665543322 344589999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||.+|...+..+++.+|++|+|+|+..
T Consensus 94 PG~~~f~~~~~~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 94 PGHVDFGGDVTRAMRAVDGAIVVVCAVE 121 (720)
T ss_pred CCccccHHHHHHHHHhcCEEEEEEecCC
Confidence 9999999999999999999999999976
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=3.6e-16 Score=141.08 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=91.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+|+|++...... +...|.|.+.....+.+.+ ..+.||||||+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~-------------s~~~gtT~d~~~~~~~~~~------~~~~l~DTaG~~ 270 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV-------------DDVAGTTVDPVDSLIELGG------KTWRFVDTAGLR 270 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc-------------cCCCCccCCcceEEEEECC------EEEEEEECCCcc
Confidence 468999999999999999999976433221 2245667666555566655 678899999963
Q ss_pred c----------cHHH-HHHhhhhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 107 D----------FSNE-VTRSLAACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 107 ~----------~~~~-~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
+ |... ...+++.+|++++|+|+++ +|+...+ .....+++.+.
T Consensus 271 ~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~ 350 (472)
T PRK03003 271 RRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRE 350 (472)
T ss_pred ccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHh
Confidence 2 2221 2345688999999999987 7775432 22333444444
Q ss_pred hC-CCccceEEecccccccccccccccCC
Q psy12244 149 FN-IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~-~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+. ...+|++++||++|.|++++++.+.+
T Consensus 351 l~~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 351 LAQVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 42 34468999999999999999988863
No 159
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.66 E-value=5.6e-16 Score=121.27 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+... +..+....+..+.....+.+ ++..+.+.+|||||+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 63 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--------------FPERTEATIGVDFRERTVEI----DGERIKVQLWDTAGQER 63 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--------------CCCccccceeEEEEEEEEEE----CCeEEEEEEEeCCChHH
Confidence 4689999999999999999996421 11111222222322223333 44557899999999998
Q ss_pred cHH-HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 108 FSN-EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~-~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
|.. .+...++.+|++++|+|+++ +|+.... .....+++.+.. .
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~ 140 (170)
T cd04115 64 FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAH---S 140 (170)
T ss_pred HHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHc---C
Confidence 874 46667889999999999987 4442211 122223333322 3
Q ss_pred cceEEecccc---cccccccccccC
Q psy12244 154 KSVLRIWHRR---CFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~---g~gi~~l~~~i~ 175 (257)
.+++++||++ +.|+++++..+.
T Consensus 141 ~~~~e~Sa~~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 141 MPLFETSAKDPSENDHVEAIFMTLA 165 (170)
T ss_pred CcEEEEeccCCcCCCCHHHHHHHHH
Confidence 5799999999 777877776554
No 160
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.66 E-value=2.5e-16 Score=123.59 Aligned_cols=125 Identities=17% Similarity=0.225 Sum_probs=85.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEecee-eEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQT-ASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..|+|||||+++++...- .. +...|+.... ..+.. ++....+.||||||+.+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~~--------------~~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 62 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PD--------------YHDPTIEDAYKQQARI----DNEPALLDILDTAGQAE 62 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CC--------------CcCCcccceEEEEEEE----CCEEEEEEEEeCCCchh
Confidence 5799999999999999999975221 10 0111221111 11222 44557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-H-HHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-P-EACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~-~~~~~~~~~~~~~~~~ 154 (257)
|...+..+++.+|++|+|+|.++ +|+.... . .+...++.+.+ .+
T Consensus 63 ~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~---~~ 139 (172)
T cd04141 63 FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF---NC 139 (172)
T ss_pred hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh---CC
Confidence 99999999999999999999988 4543211 0 11112222222 35
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.||+++|++|..
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHH
Confidence 7999999999999999988863
No 161
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=4.5e-16 Score=121.95 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=85.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|.+..... ...|.......+.+.+ ..+.+|||||+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----------------~~~t~g~~~~~i~~~~------~~~~~~D~~G~ 68 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-----------------ITPTQGFNIKTVQSDG------FKLNVWDIGGQ 68 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-----------------cCCCCCcceEEEEECC------EEEEEEECCCC
Confidence 346789999999999999999996531100 0112222222344433 78899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCc-
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDK- 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~- 153 (257)
..+...+...++.+|++++|+|+.+ +|+.... ..+++.+.++...
T Consensus 69 ~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~i~~~l~~~~~ 145 (173)
T cd04155 69 RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA---PAEEIAEALNLHDL 145 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC---CHHHHHHHcCCccc
Confidence 9998888888999999999999975 3442211 1223333343321
Q ss_pred ----cceEEecccccccccccccccC
Q psy12244 154 ----KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ----~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|+|+++++++|.
T Consensus 146 ~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 146 RDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred CCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 2478999999999999998876
No 162
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.66 E-value=2.1e-16 Score=126.76 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=81.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|++..- ..+..+..+.+.....+.+ ++..+.+.||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f--------------~~~~~pt~~~~~~~~~i~~----~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF--------------PEEYIPTEHRRLYRPAVVL----SGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC--------------CcccCCccccccceeEEEE----CCEEEEEEEEeCCCcccCC
Confidence 699999999999999999965221 1111111211211112222 3455789999999986542
Q ss_pred H--------HHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 110 N--------EVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 110 ~--------~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
. .....+..+|++|+|+|+++ +|+..... ...+.++..
T Consensus 64 ~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~-~~~~~~~~~ 142 (198)
T cd04142 64 GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF-APRHVLSVL 142 (198)
T ss_pred ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccc-ccHHHHHHH
Confidence 1 13345788999999999987 44422211 011122221
Q ss_pred hC-CCccceEEecccccccccccccccCCCcc
Q psy12244 149 FN-IDKKSVLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 149 ~~-~~~~~~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
.. ...++++++||++|.|++++++.+....+
T Consensus 143 ~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 143 VRKSWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred HHHhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 11 12467999999999999999988875443
No 163
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.66 E-value=5e-16 Score=123.99 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=84.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...-... +..+.+........+.. ++....+.+|||||+.+|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~G~~~~~ 64 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVG-------------PYQNTIGAAFVAKRMVV----GERVVTLGIWDTAGSERYE 64 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCc-------------CcccceeeEEEEEEEEE----CCEEEEEEEEECCCchhhh
Confidence 699999999999999999975321100 00111111111122222 3455788999999999988
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC---HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN---PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~---~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++++|+|.++ +|+.+.. .+...+++.++......+++
T Consensus 65 ~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 65 AMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred hhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 888788889999999999976 5553211 01011122222111124689
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
++||++|.|++++++.|...
T Consensus 145 ~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 145 ETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988743
No 164
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=7.7e-16 Score=122.48 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=86.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..|+|||||+++|+...-. .+..+..+.+.....+.+ ++....+.+|||||+.+|.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~g~~~~~ 63 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFS--------------ESTKSTIGVDFKIKTVYI----ENKIIKLQIWDTNGQERFR 63 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEE----CCEEEEEEEEECCCcHHHH
Confidence 6999999999999999999642211 001111222222222332 3345788999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
..+...++.+|++++|+|+++ +|+.+.. .......+.+.++ .+++
T Consensus 64 ~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~---~~~~ 140 (188)
T cd04125 64 SLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLN---IPFF 140 (188)
T ss_pred hhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcC---CeEE
Confidence 888899999999999999987 5654221 1122223333333 3699
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
++||++|.|+++++++|...
T Consensus 141 evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 141 ETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999888643
No 165
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=4.7e-16 Score=124.02 Aligned_cols=124 Identities=13% Similarity=0.185 Sum_probs=83.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|.+|+|||||+++|+...- ... ...|.... ...+.+ ++....+.||||||+++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~--------------~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~ 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VET--------------YDPTIEDSYRKQVVV----DGQPCMLEVLDTAGQEEY 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Ccc--------------CCCchHhhEEEEEEE----CCEEEEEEEEECCCchhh
Confidence 489999999999999999975221 100 00111100 111222 344467999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCH--HHHHHHHHHHhCCCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANP--EACEEQLQTLFNIDK 153 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~--~~~~~~~~~~~~~~~ 153 (257)
......+++.+|++|+|+|.++ +|+..... ......+.+.++
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~--- 137 (190)
T cd04144 61 TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG--- 137 (190)
T ss_pred HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC---
Confidence 9988899999999999999977 45432110 111122233233
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.+..
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHH
Confidence 46999999999999999988874
No 166
>PLN03108 Rab family protein; Provisional
Probab=99.66 E-value=4.1e-16 Score=126.29 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=88.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|+.|+|||||+++|+...-.. .....+..+.....+.+ .+....+.+|||||+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~--------------~~~~ti~~~~~~~~i~~----~~~~i~l~l~Dt~G~ 65 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITI----DNKPIKLQIWDTAGQ 65 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCCccceEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 345789999999999999999997532111 01112222222222333 334467899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.|...+...++.+|++|+|+|++. +|+.... ..+..+++.+.++
T Consensus 66 ~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 142 (210)
T PLN03108 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--- 142 (210)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC---
Confidence 9999888889999999999999987 4553321 1111222233223
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++|+++..
T Consensus 143 ~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 143 LIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999877764
No 167
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.66 E-value=2.2e-16 Score=124.98 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=87.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|..++|||||+.+++...- .. +...|+...+. ....- ++....+.+|||+|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f--------------~~--~~~pT~~~~~~-~~~~~--~~~~~~l~iwDtaG~ 63 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCF--------------PE--NYVPTVFENYT-ASFEI--DTQRIELSLWDTSGS 63 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCC--------------CC--ccCCceeeeeE-EEEEE--CCEEEEEEEEECCCc
Confidence 3456899999999999999999965221 11 11122221111 11111 455688999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC-----------C---HHHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA-----------N---PEAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~-----------~---~~~~ 141 (257)
+.|......+++.+|++|+|+|.++ +|+.+. . ..+.
T Consensus 64 e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 64 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 9999888889999999999999988 565321 0 0111
Q ss_pred HHHHHHHhCCCccceEEeccccccc-ccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFS-CADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~~ 176 (257)
.+++++.++ ..+++++||++|.| |+++|+.+.+
T Consensus 144 ~~~~a~~~~--~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANMAKQIG--AATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHHcC--CCEEEECCcCCCCCCHHHHHHHHHH
Confidence 223333323 23799999999998 9999876653
No 168
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.65 E-value=5.2e-16 Score=121.11 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
+|+++|++|+|||||+++|.+..... ....+.|.......+.+.. ...+.||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v--------------~~~~~~t~~~~~~~~~~~~-----~~~~~l~DtpG~~~~~ 62 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI--------------ADYPFTTLVPNLGVVRVDD-----GRSFVVADIPGLIEGA 62 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc--------------cCCCccccCCcceEEEcCC-----CCeEEEEecCcccCcc
Confidence 68999999999999999996532211 0112334444444444433 13899999999742
Q ss_pred -----cHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 108 -----FSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 108 -----~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
+...+...+..+|++++|+|++. +|+.+. ....+.+...+
T Consensus 63 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~ 140 (170)
T cd01898 63 SEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKELL 140 (170)
T ss_pred cccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHHHH
Confidence 33444455667999999999963 333221 11122222222
Q ss_pred CC-CccceEEecccccccccccccccC
Q psy12244 150 NI-DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~-~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.. ...+++++||++|.|+++++++|.
T Consensus 141 ~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 167 (170)
T cd01898 141 KELWGKPVFPISALTGEGLDELLRKLA 167 (170)
T ss_pred hhCCCCCEEEEecCCCCCHHHHHHHHH
Confidence 22 245689999999999999988775
No 169
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.65 E-value=1.2e-15 Score=121.24 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=85.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|..|+|||||+++|++..-. .+ ...|....+. .+... ++....+.+|||||+++|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--------------~~--~~~t~~~~~~~~i~~~---~~~~~~l~i~Dt~G~~~~ 62 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--------------EE--YVPTVFENYVTNIQGP---NGKIIELALWDTAGQEEY 62 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--------------CC--CCCeeeeeeEEEEEec---CCcEEEEEEEECCCchhH
Confidence 6999999999999999999753210 00 1112211111 12211 244578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC------HHHHHHHHHHHhCCC
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN------PEACEEQLQTLFNID 152 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~------~~~~~~~~~~~~~~~ 152 (257)
.......++.+|++++|+|+++ .|+.... .....+++...++.
T Consensus 63 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~- 141 (187)
T cd04132 63 DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA- 141 (187)
T ss_pred HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC-
Confidence 8888888999999999999987 4543211 01122223332332
Q ss_pred ccceEEecccccccccccccccCCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
.+++++||++|.|++++++.+...
T Consensus 142 -~~~~e~Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 142 -FAYLECSAKTMENVEEVFDTAIEE 165 (187)
T ss_pred -cEEEEccCCCCCCHHHHHHHHHHH
Confidence 268999999999999999888744
No 170
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.65 E-value=1.2e-16 Score=134.60 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=131.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc--------------
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI-------------- 89 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-------------- 89 (257)
....+|+..||+++|||||++.|+ ++..+.. ....+.|.+++|-++|.|.+.....+.|.+-
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLV--TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEE--ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 345679999999999999999984 5655555 3456789999999999999988888777541
Q ss_pred ---cCCccEEEEEeCCCCCcccHHHHHHhh--hhcceEEEEEecCc--------------------------cCCCCCC-
Q psy12244 90 ---LDGEEYLLNLIDTPGHVDFSNEVTRSL--AACQGVVLLIDANQ--------------------------VDLKNAN- 137 (257)
Q Consensus 90 ---~~~~~~~~~liDtpG~~~~~~~~~~~~--~~aD~~ilVvd~~~--------------------------~D~~~~~- 137 (257)
.+.....+.|+||-||+.|...++.++ ++.|..+|++.|++ +|+.+.+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHH
Confidence 011246789999999999999999998 56899999999998 7775433
Q ss_pred HHHHHHHHHHHhC-------------------------CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCC
Q psy12244 138 PEACEEQLQTLFN-------------------------IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATP 192 (257)
Q Consensus 138 ~~~~~~~~~~~~~-------------------------~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~ 192 (257)
++.+.+++...+. ....|+|.+|+.+|+|++-|.+.+..+|.-. .-....
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr-----~~~d~g 347 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR-----RWDDEG 347 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCccc-----ccCCCC
Confidence 5555555544431 1124899999999999998877776544211 112333
Q ss_pred CCCcchhhhcceeeEeeeccc
Q psy12244 193 YEDIPIARIRNFSIIAHVDHG 213 (257)
Q Consensus 193 ~~~~~~~~~~~~~~~G~v~~G 213 (257)
++.|.+++++.+..+|.+.+|
T Consensus 348 ~flmYId~iYsVtGVGtVvsG 368 (527)
T COG5258 348 PFLMYIDKIYSVTGVGTVVSG 368 (527)
T ss_pred CeEEEEEeeEEEeeeEEEEee
Confidence 456778887777666665555
No 171
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.65 E-value=1.2e-15 Score=118.43 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=84.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+++|||||+++|....... ..+..+.+..+.....+.+. ++....+.+|||||+..+.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~------------~~~~~~t~~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVF------------PKNYLMTTGCDFVVKEVPVD---TDNTVELFIFDSAGQELYS 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc------------CccCCCceEEEEEEEEEEeC---CCCEEEEEEEECCCHHHHH
Confidence 69999999999999999996421111 11111112222212222221 2345789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC-H-HHHHHHHHHHhCCCccceEE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN-P-EACEEQLQTLFNIDKKSVLR 158 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~-~-~~~~~~~~~~~~~~~~~~i~ 158 (257)
..+...+..+|++++|+|.++ +|+.... . ....+.+...++ .++++
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~ 143 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ---LKFFK 143 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC---CeEEE
Confidence 888889999999999999986 4553221 1 111122222222 46899
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+||++|.|++++++.|.
T Consensus 144 ~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 144 TSALRGVGYEEPFESLA 160 (164)
T ss_pred EeCCCCCChHHHHHHHH
Confidence 99999999999988765
No 172
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.65 E-value=7.2e-16 Score=119.57 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=83.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceE-eceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV-KAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++++... .... .. .|. +.....+.. ++....+.||||||+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~------------~~--~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT--FIEK------------YD--PTIEDFYRKEIEV----DSSPSVLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCC------------CC--CchhheEEEEEEE----CCEEEEEEEEECCCccc
Confidence 479999999999999999996521 1110 00 111 111111222 34446788999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|.++ +|+.... .......+...++ .
T Consensus 62 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 138 (163)
T cd04176 62 FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG---C 138 (163)
T ss_pred ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC---C
Confidence 99988889999999999999987 4542211 0111223333333 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++++.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHH
Confidence 689999999999999988765
No 173
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.65 E-value=1.1e-15 Score=121.96 Aligned_cols=130 Identities=18% Similarity=0.092 Sum_probs=87.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..++|||||+.+++...- .. +...|+...+. ..+.. ++....+.+|||||+++|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f--------------~~--~~~~t~~~~~~-~~~~~--~~~~~~l~i~Dt~G~e~~ 64 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF--------------PK--EYIPTVFDNYS-AQTAV--DGRTVSLNLWDTAGQEEY 64 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--------------Cc--CCCCceEeeeE-EEEEE--CCEEEEEEEEECCCchhh
Confidence 5799999999999999999965211 11 11123321111 11111 556688999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--HH---------HHHHHHH
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--EA---------CEEQLQT 147 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--~~---------~~~~~~~ 147 (257)
...+..+++.+|++|+|+|.++ .|+.+... +. ..++.++
T Consensus 65 ~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T cd01875 65 DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 9888889999999999999988 55532210 00 0011111
Q ss_pred Hh-CCCccceEEecccccccccccccccCCC
Q psy12244 148 LF-NIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 148 ~~-~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+. .....+++++||++|.||+++|+.+.+.
T Consensus 145 ~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 145 LAKQIHAVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred HHHHcCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 11 1122469999999999999999988753
No 174
>KOG1423|consensus
Probab=99.64 E-value=8.1e-16 Score=126.26 Aligned_cols=86 Identities=24% Similarity=0.339 Sum_probs=61.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||.|.+++....+... +. ++++....+++....+++.|+||||.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~-------------K~------~TTr~~ilgi~ts~eTQlvf~DTPGl 130 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR-------------KV------HTTRHRILGIITSGETQLVFYDTPGL 130 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccc-------------cc------cceeeeeeEEEecCceEEEEecCCcc
Confidence 467899999999999999999998866554332 22 23333333333445589999999995
Q ss_pred cc------------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VD------------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~------------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.. +..+...++..||++++|+|+.+
T Consensus 131 vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 131 VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA 167 (379)
T ss_pred cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC
Confidence 32 22344457788999999999994
No 175
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.64 E-value=2.8e-16 Score=121.02 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=83.9
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH--
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN-- 110 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-- 110 (257)
++|++|+|||||+++|++... . ....++.|.+.....+.+.+ ..+.+|||||+.++..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~-------------~~~~~~~t~~~~~~~~~~~~------~~~~liDtpG~~~~~~~~ 60 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-K-------------VGNWPGVTVEKKEGRFKLGG------KEIEIVDLPGTYSLSPYS 60 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-c-------------ccCCCCcccccceEEEeeCC------eEEEEEECCCccccCCCC
Confidence 589999999999999965321 1 11235667776666666654 6899999999987653
Q ss_pred ----HHHHhh--hhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhCCCccceEEe
Q psy12244 111 ----EVTRSL--AACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 111 ----~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~i~i 159 (257)
.....+ ..+|++++|+|+.. +|+.... .....+.+...++ .+++++
T Consensus 61 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~i 137 (158)
T cd01879 61 EDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLG---VPVVPT 137 (158)
T ss_pred hhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhC---CCeEEE
Confidence 233444 48999999999987 5664332 1222234444333 469999
Q ss_pred cccccccccccccccC
Q psy12244 160 WHRRCFSCADCHRSLD 175 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~ 175 (257)
||++|.|++++++.+.
T Consensus 138 Sa~~~~~~~~l~~~l~ 153 (158)
T cd01879 138 SARKGEGIDELKDAIA 153 (158)
T ss_pred EccCCCCHHHHHHHHH
Confidence 9999999999988775
No 176
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.64 E-value=3.2e-16 Score=123.37 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=86.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..++|||+|+.+++... . ..+ ...|+.... ...+.. ++....+.||||+|+++|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~--f------------~~~--~~~Ti~~~~-~~~~~~--~~~~v~l~i~Dt~G~~~~ 62 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK--F------------PTD--YIPTVFDNF-SANVSV--DGNTVNLGLWDTAGQEDY 62 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC--C------------CCC--CCCcceeee-EEEEEE--CCEEEEEEEEECCCCccc
Confidence 479999999999999999996421 1 111 112322111 111222 456689999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC------------HHHHHHHHH
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN------------PEACEEQLQ 146 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~------------~~~~~~~~~ 146 (257)
......+++.+|++|+|+|.++ +|+.+.. ..+..+++.
T Consensus 63 ~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 63 NRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 9888889999999999999987 6663321 011122233
Q ss_pred HHhCCCccceEEecccccccccccccccCC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+..+ ..+++++||++|.||+++|+.+.+
T Consensus 143 ~~~~--~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 143 KQIG--AAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred HHcC--CCEEEECCCCcccCHHHHHHHHHH
Confidence 3222 225899999999999999988774
No 177
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.64 E-value=1.2e-15 Score=116.98 Aligned_cols=123 Identities=18% Similarity=0.135 Sum_probs=81.6
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN 110 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 110 (257)
|+++|++|+|||||+++|.+.... .+..+ |.......+.+.. ..+.+|||||+..|..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~--------------~~~~~--t~~~~~~~~~~~~------~~~~~~D~~g~~~~~~ 59 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS--------------EDTIP--TVGFNMRKVTKGN------VTLKVWDLGGQPRFRS 59 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC--------------cCccC--CCCcceEEEEECC------EEEEEEECCCCHhHHH
Confidence 799999999999999999653211 01111 2222222233322 7899999999999999
Q ss_pred HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHH-HHhCCCccceE
Q psy12244 111 EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQ-TLFNIDKKSVL 157 (257)
Q Consensus 111 ~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~-~~~~~~~~~~i 157 (257)
.+...+..+|++++|+|++. +|+.... .....+.+. ........+++
T Consensus 60 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (159)
T cd04159 60 MWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCY 139 (159)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEE
Confidence 89999999999999999986 3432221 111121111 00111234689
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++|+++|.|+++++++|.
T Consensus 140 ~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 140 SISCKEKTNIDIVLDWLI 157 (159)
T ss_pred EEEeccCCChHHHHHHHh
Confidence 999999999999988775
No 178
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.64 E-value=8.2e-16 Score=118.73 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=84.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|+....... ..+..+.......+.+ .+....+.+|||||+..+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~g~~~~ 62 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--------------HESTTQASFFQKTVNI----GGKRIDLAIWDTAGQERY 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--------------cCCccceeEEEEEEEE----CCEEEEEEEEECCchHHH
Confidence 3799999999999999999976332110 0111111211222222 233467999999999998
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
...+...++.+|++++|+|+++ +|+.... ..+..+++.+.+ ..++
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~ 139 (162)
T cd04123 63 HALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV---GAKH 139 (162)
T ss_pred HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc---CCEE
Confidence 8888888899999999999987 5554221 112222223322 3458
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++++.
T Consensus 140 ~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 140 FETSAKTGKGIEELFLSLA 158 (162)
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 9999999999999988775
No 179
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.64 E-value=6.1e-16 Score=121.65 Aligned_cols=125 Identities=16% Similarity=0.074 Sum_probs=83.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..|+|||||+.+++... ... +...|+... ...+.+ ++....+.||||||+++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~--------------~~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPG--------------EYIPTVFDNYSANVMV----DGKPVNLGLWDTAGQED 61 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC--------------cCCCcceeeeEEEEEE----CCEEEEEEEEECCCchh
Confidence 479999999999999999996521 111 111121111 111222 45557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--H------------HHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--P------------EACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~------------~~~~~ 143 (257)
|...+...++.+|++|+|+|.++ +|+.+.. . .....
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 98888888999999999999987 5553211 0 00011
Q ss_pred HHHHHhCCCccceEEecccccccccccccccC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++.+. ....+++++||++|.|++++++.+.
T Consensus 142 ~~~~~--~~~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 142 AMAKE--IGAVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred HHHHH--cCCcEEEEecccccCCHHHHHHHHH
Confidence 12222 2234789999999999999988764
No 180
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=9.2e-16 Score=125.51 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=88.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|..++|||+|+.+|+... . ..+.. .|+...+. ..+.. ++....+.||||+|++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~--F------------~~~y~--pTi~~~~~-~~i~~--~~~~v~l~iwDTaG~e 72 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC--Y------------PETYV--PTVFENYT-AGLET--EEQRVELSLWDTSGSP 72 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC--C------------CCCcC--CceeeeeE-EEEEE--CCEEEEEEEEeCCCch
Confidence 45689999999999999999996521 1 11111 12211111 11111 4556889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC------------C--HHHHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA------------N--PEACE 142 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~------------~--~~~~~ 142 (257)
+|......+++.+|++|+|+|.++ +|+... . ..+..
T Consensus 73 ~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~ 152 (232)
T cd04174 73 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQG 152 (232)
T ss_pred hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHH
Confidence 999888889999999999999987 666421 0 01112
Q ss_pred HHHHHHhCCCccceEEecccccc-cccccccccCCC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCF-SCADCHRSLDST 177 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~-gi~~l~~~i~~~ 177 (257)
+++.+.++. .+++++||++|. ||+++|+.+...
T Consensus 153 ~~~a~~~~~--~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 153 CALAKQLGA--EVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred HHHHHHcCC--CEEEEccCCcCCcCHHHHHHHHHHH
Confidence 233333332 258999999998 899999888643
No 181
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.64 E-value=1.3e-15 Score=118.62 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=57.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN 110 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 110 (257)
|+++|..|+|||||+++|+..... . ....|.......+.+. ...+.+|||||+.+|..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~--------------~~~pt~g~~~~~i~~~------~~~l~i~Dt~G~~~~~~ 59 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--E--------------SVVPTTGFNSVAIPTQ------DAIMELLEIGGSQNLRK 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--c--------------cccccCCcceEEEeeC------CeEEEEEECCCCcchhH
Confidence 789999999999999999653210 0 0111222222223232 37899999999999999
Q ss_pred HHHHhhhhcceEEEEEecCc
Q psy12244 111 EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 111 ~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+..+++.+|++++|+|+++
T Consensus 60 ~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 60 YWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred HHHHHHhhCCEEEEEEECCC
Confidence 99999999999999999986
No 182
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.64 E-value=5.8e-16 Score=121.90 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=83.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..|+|||||+.+|++.. . .. ....|+..... .+.+ ++..+.+.||||||+++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f------------~~--~~~pt~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--F------------PS--EYVPTVFDNYAVTVMI----GGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--C------------CC--CCCCceeeeeEEEEEE----CCEEEEEEEEECCCccc
Confidence 479999999999999999996521 1 00 11122221111 1222 44558899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH-----------HHHHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP-----------EACEEQLQ 146 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~-----------~~~~~~~~ 146 (257)
|...+..+++.+|++|+|+|.++ +|+..... ....++.+
T Consensus 62 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~ 141 (175)
T cd01874 62 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHH
Confidence 98888888999999999999987 44422100 00001111
Q ss_pred HHh-CCCccceEEecccccccccccccccC
Q psy12244 147 TLF-NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 147 ~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.. .....+++++||++|.|++++++.+.
T Consensus 142 ~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~ 171 (175)
T cd01874 142 KLARDLKAVKYVECSALTQKGLKNVFDEAI 171 (175)
T ss_pred HHHHHhCCcEEEEecCCCCCCHHHHHHHHH
Confidence 111 12234699999999999999988765
No 183
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=5.1e-16 Score=122.49 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=84.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEecee-eEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQT-ASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..++|||||+++|+...- ..+.. .|+...+ ..+.. ++....+.+|||||++.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--------------~~~~~--~t~~~~~~~~~~~----~~~~~~l~iwDt~G~~~ 61 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--------------PETYV--PTVFENYTASFEI----DEQRIELSLWDTSGSPY 61 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--------------CCCcC--CceEEEEEEEEEE----CCEEEEEEEEECCCchh
Confidence 4699999999999999999965311 11111 1221111 11222 44568899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC-----------C---HHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA-----------N---PEACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~-----------~---~~~~~~ 143 (257)
|......+++.+|++|+|+|.++ +|+.+. . ..+..+
T Consensus 62 ~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 62 YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHH
Confidence 98888888999999999999987 565321 0 011122
Q ss_pred HHHHHhCCCccceEEeccccccc-ccccccccCC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFS-CADCHRSLDS 176 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~~ 176 (257)
++.+.++ ..+++++||++|+| |+++|..+.+
T Consensus 142 ~~a~~~~--~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 142 AIAKQLG--AEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHhC--CCEEEECccCcCCcCHHHHHHHHHH
Confidence 2333323 23689999999995 9999877653
No 184
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.63 E-value=1.7e-15 Score=118.23 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=84.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++|.+..... . ..+ |.... ...+.+ ++....+.+|||||+.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~----------~----~~~--t~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE----------S----YDP--TIEDSYRKQVEI----DGRQCDLEILDTAGTEQ 61 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----------c----cCC--cchheEEEEEEE----CCEEEEEEEEeCCCccc
Confidence 469999999999999999997532110 0 001 11111 111222 33446889999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH--HHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP--EACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~--~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|.++ +|+..... .+....+.+.+ ...
T Consensus 62 ~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~ 139 (168)
T cd04177 62 FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQW--GNV 139 (168)
T ss_pred chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHc--CCc
Confidence 99999999999999999999876 55432211 11112222322 235
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++++.
T Consensus 140 ~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 140 PFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred eEEEeeCCCCCCHHHHHHHHH
Confidence 799999999999999988876
No 185
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.63 E-value=8.5e-16 Score=117.93 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=80.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+........ ..++.|.+.....+.+.. ..+.+|||||+.++.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~------~~~~i~DtpG~~~~~ 63 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVS-------------DIAGTTRDVIEESIDIGG------IPVRLIDTAGIRETE 63 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEecc-------------CCCCCccceEEEEEEeCC------EEEEEEECCCcCCCc
Confidence 6899999999999999999764322111 123444444344444433 689999999987753
Q ss_pred H--------HHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 110 N--------EVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~--------~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
. .....+..+|++++|+|+.. +|+...... .......+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~ 135 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL--------LSLLAGKPII 135 (157)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc--------ccccCCCceE
Confidence 2 23456678999999999995 443221111 1112235799
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|+++++++|.
T Consensus 136 ~~Sa~~~~~v~~l~~~l~ 153 (157)
T cd04164 136 AISAKTGEGLDELKEALL 153 (157)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999988765
No 186
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.63 E-value=8.3e-16 Score=133.52 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=93.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
-.+++|+|+||+|||||+|+|+++..+++.. -+|.|.+.-...+...+ +.+.++||+|..+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-------------I~GTTRDviee~i~i~G------~pv~l~DTAGiRe 277 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTD-------------IAGTTRDVIEEDINLNG------IPVRLVDTAGIRE 277 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecC-------------CCCCccceEEEEEEECC------EEEEEEecCCccc
Confidence 3579999999999999999999988877554 67899999888888888 8999999999865
Q ss_pred c--------HHHHHHhhhhcceEEEEEecCc-------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 108 F--------SNEVTRSLAACQGVVLLIDANQ-------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~--------~~~~~~~~~~aD~~ilVvd~~~-------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
- .......+..||++++|+|++. +|+..... ...+ + + ....
T Consensus 278 t~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~---~~~~-~-~-~~~~ 351 (454)
T COG0486 278 TDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIE---LESE-K-L-ANGD 351 (454)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccc---cchh-h-c-cCCC
Confidence 2 2234456789999999999997 11111100 0000 0 0 1223
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++.+||++|+|++.|.+.|..
T Consensus 352 ~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 352 AIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred ceEEEEecCccCHHHHHHHHHH
Confidence 5899999999999999998884
No 187
>PRK00089 era GTPase Era; Reviewed
Probab=99.63 E-value=1.2e-15 Score=129.68 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=84.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+...|+++|++|+|||||+|+|++....+... ....|.......... ...++.|+||||+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~-------------~~~tt~~~i~~i~~~------~~~qi~~iDTPG~~ 64 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP-------------KPQTTRHRIRGIVTE------DDAQIIFVDTPGIH 64 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC-------------CCCcccccEEEEEEc------CCceEEEEECCCCC
Confidence 45679999999999999999998654433221 112222211111111 12689999999986
Q ss_pred cc--------HHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC--CHHHHHHHHHHHhC
Q psy12244 107 DF--------SNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA--NPEACEEQLQTLFN 150 (257)
Q Consensus 107 ~~--------~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~--~~~~~~~~~~~~~~ 150 (257)
+. .......+..+|++++|+|++. +|+... ......+.+.+.+
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~- 143 (292)
T PRK00089 65 KPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELM- 143 (292)
T ss_pred CchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhC-
Confidence 53 2344556788999999999986 666421 1222333333332
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++++||++|.|++++++.|..
T Consensus 144 -~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 144 -DFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred -CCCeEEEecCCCCCCHHHHHHHHHH
Confidence 3457999999999999999988864
No 188
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.63 E-value=1.2e-15 Score=119.15 Aligned_cols=123 Identities=23% Similarity=0.208 Sum_probs=83.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+++|||||+++|.+. ... +...|+......+.+.. ..+.+|||||+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~--------------~~~~t~g~~~~~~~~~~------~~~~i~D~~G~~~~~ 57 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK--------------KVAPTVGFTPTKLRLDK------YEVCIFDLGGGANFR 57 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc--------------cccCcccceEEEEEECC------EEEEEEECCCcHHHH
Confidence 4899999999999999999642 100 11123322233344433 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHH--HHHhC--CCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQL--QTLFN--IDK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~--~~~~~--~~~ 153 (257)
..+..+++.+|++++|+|+++ +|+.... ..+..+.+ .+... ...
T Consensus 58 ~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~ 137 (167)
T cd04161 58 GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSL 137 (167)
T ss_pred HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCce
Confidence 999999999999999999987 5554432 22222221 11110 112
Q ss_pred cceEEeccccc------ccccccccccC
Q psy12244 154 KSVLRIWHRRC------FSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g------~gi~~l~~~i~ 175 (257)
.+++++||++| .|+++.++||.
T Consensus 138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 138 CHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 45788999998 78988888775
No 189
>KOG0095|consensus
Probab=99.63 E-value=9.6e-16 Score=112.83 Aligned_cols=129 Identities=17% Similarity=0.264 Sum_probs=91.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|+++|+.|+|||.|+.++.+ +..+.. +|-|+...+.....+- ++...++.+|||+|++
T Consensus 6 flfkivlvgnagvgktclvrrftq--glfppg--------------qgatigvdfmiktvev--~gekiklqiwdtagqe 67 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQ--GLFPPG--------------QGATIGVDFMIKTVEV--NGEKIKLQIWDTAGQE 67 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhc--cCCCCC--------------CCceeeeeEEEEEEEE--CCeEEEEEEeeccchH
Confidence 467899999999999999999943 433222 3344443333322222 5677899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhC-CCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFN-IDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~-~~~~~ 155 (257)
+|...+.++++.|+++|+|+|.+. +|+.+ ..++-+++.+.+. ....-
T Consensus 68 rfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d--rrevp~qigeefs~~qdmy 145 (213)
T KOG0095|consen 68 RFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD--RREVPQQIGEEFSEAQDMY 145 (213)
T ss_pred HHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh--hhhhhHHHHHHHHHhhhhh
Confidence 999999999999999999999986 45422 2333333333331 12223
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||+..+|++.||..+.
T Consensus 146 fletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 146 FLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhhcccchhhHHHHHHHHH
Confidence 78999999999999987665
No 190
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=1.2e-15 Score=122.02 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=88.7
Q ss_pred CCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccE
Q psy12244 16 KATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEY 95 (257)
Q Consensus 16 ~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~ 95 (257)
+...|..++....++|+++|++|+|||||+++|++..... ......+.|..... ..+ ..
T Consensus 12 ~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~------------~~~~~~~~t~~~~~--~~~-------~~ 70 (196)
T PRK00454 12 SAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLA------------RTSKTPGRTQLINF--FEV-------ND 70 (196)
T ss_pred hhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc------------cccCCCCceeEEEE--Eec-------CC
Confidence 3345777888889999999999999999999997632100 00112233433221 111 15
Q ss_pred EEEEeCCCCCc----------ccHHHHHHhhh---hcceEEEEEecCc--------------------------cCCCCC
Q psy12244 96 LLNLIDTPGHV----------DFSNEVTRSLA---ACQGVVLLIDANQ--------------------------VDLKNA 136 (257)
Q Consensus 96 ~~~liDtpG~~----------~~~~~~~~~~~---~aD~~ilVvd~~~--------------------------~D~~~~ 136 (257)
.+.||||||+. .+......++. .++++++|+|+.. +|+...
T Consensus 71 ~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 71 KLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred eEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH
Confidence 78999999963 23333333443 3467888888765 555332
Q ss_pred -CHHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 137 -NPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++..+.+++.++....+++++||++|.|++++++.|.
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 151 GERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence 133344445555543245799999999999999988876
No 191
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.63 E-value=2.3e-15 Score=118.87 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=83.1
Q ss_pred CCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEE
Q psy12244 17 ATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYL 96 (257)
Q Consensus 17 ~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~ 96 (257)
+...+++|..+.++|+|+|++|+|||||+|+|++..... . .....+.|..... +.+ + ..
T Consensus 7 ~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~-~-----------~~~~~~~t~~~~~--~~~----~---~~ 65 (179)
T TIGR03598 7 AVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLA-R-----------TSKTPGRTQLINF--FEV----N---DG 65 (179)
T ss_pred eccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-c-----------ccCCCCcceEEEE--EEe----C---Cc
Confidence 344567777888999999999999999999997632110 0 0112233333221 111 1 25
Q ss_pred EEEeCCCCCcc----------cHHHHHHhhh---hcceEEEEEecCc--------------------------cCCCCC-
Q psy12244 97 LNLIDTPGHVD----------FSNEVTRSLA---ACQGVVLLIDANQ--------------------------VDLKNA- 136 (257)
Q Consensus 97 ~~liDtpG~~~----------~~~~~~~~~~---~aD~~ilVvd~~~--------------------------~D~~~~- 136 (257)
+.+|||||+.. +......+++ .+|++++|+|++. +|+...
T Consensus 66 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 66 FRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKS 145 (179)
T ss_pred EEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHH
Confidence 88999999642 3333333443 4689999999987 676432
Q ss_pred CHHHHHHHHHHHhCCC--ccceEEeccccccccc
Q psy12244 137 NPEACEEQLQTLFNID--KKSVLRIWHRRCFSCA 168 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~--~~~~i~iSa~~g~gi~ 168 (257)
+.+...+++++.++.. ..++|++||++|+|++
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 146 ELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 2344555666655432 2479999999999985
No 192
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=9.4e-16 Score=122.17 Aligned_cols=130 Identities=19% Similarity=0.163 Sum_probs=85.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
++|+++|..|+|||||+++|+...- . .+.. .|+...+. .+.. ++....+.||||||++.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~--~------------~~~~--~t~~~~~~~~i~~----~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF--P------------QVYE--PTVFENYVHDIFV----DGLHIELSLWDTAGQEE 60 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--C------------CccC--CcceeeeEEEEEE----CCEEEEEEEEECCCChh
Confidence 4799999999999999999965211 0 0011 12211111 1111 34457899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHH-----------HHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEA-----------CEEQLQ 146 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~-----------~~~~~~ 146 (257)
|...+..+++.+|++++|+|.++ +|+....... ..++..
T Consensus 61 ~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 140 (189)
T cd04134 61 FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL 140 (189)
T ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 88777778899999999999888 5553321100 011111
Q ss_pred HHh-CCCccceEEecccccccccccccccCCCc
Q psy12244 147 TLF-NIDKKSVLRIWHRRCFSCADCHRSLDSTN 178 (257)
Q Consensus 147 ~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~~~~ 178 (257)
+.. ....++++++||++|.|++++|++|....
T Consensus 141 ~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 141 AVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 111 12235799999999999999999887543
No 193
>KOG0086|consensus
Probab=99.63 E-value=2.3e-15 Score=111.26 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=90.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.-..+++++|+.|.|||.|+.+++...-. ....+.+.++.+...+.. .++..++.+|||+|+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfk--------------DdssHTiGveFgSrIinV----GgK~vKLQIWDTAGQ 68 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFK--------------DDSSHTIGVEFGSRIVNV----GGKTVKLQIWDTAGQ 68 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhc--------------ccccceeeeeecceeeee----cCcEEEEEEeecccH
Confidence 34678999999999999999999764321 111222333333333332 456689999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
++|...+.++++.|-+++||+|++. -|+.. +.+....+...+..-...-
T Consensus 69 ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs~FaqEnel~ 147 (214)
T KOG0086|consen 69 ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELM 147 (214)
T ss_pred HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHHhhhccccee
Confidence 9999999999999999999999998 23322 1233333444444334445
Q ss_pred eEEeccccccccccccccc
Q psy12244 156 VLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i 174 (257)
+.++||++|+|+++.|-..
T Consensus 148 flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKC 166 (214)
T ss_pred eeeecccccccHHHHHHHH
Confidence 7899999999999876433
No 194
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=1.2e-15 Score=122.52 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=83.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|+.|+|||||+++|+...-. .. ....+.+.....+.+ .+....+.||||||+..|.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~-------------~~~t~~~~~~~~~~~----~~~~~~l~i~D~~G~~~~~ 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PK-------------YRRTVEEMHRKEYEV----GGVSLTLDILDTSGSYSFP 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cc-------------CCCchhhheeEEEEE----CCEEEEEEEEECCCchhhh
Confidence 4899999999999999999763211 00 000011111122222 2344688999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC-CCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN-IDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~-~~~~~~i 157 (257)
.....++..+|++++|+|+++ +|+.........+...+... ....+++
T Consensus 62 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 141 (198)
T cd04147 62 AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFV 141 (198)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEE
Confidence 888888999999999999987 56533211111111111111 1124689
Q ss_pred EecccccccccccccccCC
Q psy12244 158 RIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~ 176 (257)
++||++|.|++++++++..
T Consensus 142 ~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 142 ETSAKDNENVLEVFKELLR 160 (198)
T ss_pred EecCCCCCCHHHHHHHHHH
Confidence 9999999999999988874
No 195
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.62 E-value=4.1e-15 Score=115.12 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=84.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+...-. .. ..+.+.+.......+ ++....+.+|||||+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~-------------~~~~~~~~~~~~~~~----~~~~~~~~i~D~~g~~~~~ 62 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--ED-------------YEPTKADSYRKKVVL----DGEDVQLNILDTAGQEDYA 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cc-------------cCCcchhhEEEEEEE----CCEEEEEEEEECCChhhhh
Confidence 7999999999999999999753211 00 000011111111111 3445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC--CHHHHHHHHHHHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA--NPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~--~~~~~~~~~~~~~~~~~~~~ 156 (257)
......++.+|++++|+|... +|+... ........+.+.++ .++
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~---~~~ 139 (164)
T cd04139 63 AIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG---VPY 139 (164)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC---CeE
Confidence 999999999999999999876 566431 11122223333333 479
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++.+.
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 140 VETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred EEeeCCCCCCHHHHHHHHH
Confidence 9999999999999998775
No 196
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.62 E-value=1.5e-15 Score=119.10 Aligned_cols=124 Identities=16% Similarity=0.138 Sum_probs=82.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEe-ceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK-AQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|++|+|||||+++|++..-. .. .. .|.. .....+.+ ++..+.+.+|||||+.+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~------------~~--~t~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EE------------YV--PTVFDHYAVSVTV----GGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CC------------CC--CceeeeeEEEEEE----CCEEEEEEEEeCCCcccc
Confidence 6999999999999999999753211 00 00 1111 11112222 344577899999999998
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHH--------------HHHHH
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPE--------------ACEEQ 144 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~--------------~~~~~ 144 (257)
.......++.+|++++|+|..+ +|+.+.... +....
T Consensus 62 ~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 62 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 8877788899999999999877 555322100 01111
Q ss_pred HHHHhCCCccceEEecccccccccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.+. ....+++++||++|.|++++++.+.
T Consensus 142 ~~~~--~~~~~~~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 142 LAKE--IGAHCYVECSALTQKGLKTVFDEAI 170 (174)
T ss_pred HHHH--cCCCEEEEecCCcCCCHHHHHHHHH
Confidence 2222 2234689999999999999988765
No 197
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=2.4e-15 Score=129.40 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=87.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+..|+|+|.+|||||||+++|+.....+. ..+..|+.+....+.+.. ...+.+|||||+.+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va--------------~ypfTT~~p~~G~v~~~~-----~~~~~i~D~PGli~ 218 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIA--------------DYPFTTLHPNLGVVRVDD-----YKSFVIADIPGLIE 218 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccC--------------CCCCceeCceEEEEEeCC-----CcEEEEEeCCCccC
Confidence 34689999999999999999975332211 123457777777676632 15799999999743
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
+...+...+..+|++++|+|+++ +|+.+... ...+.++..
T Consensus 219 ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~-~~~~~~~~~ 297 (335)
T PRK12299 219 GASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE-EREKRAALE 297 (335)
T ss_pred CCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh-HHHHHHHHH
Confidence 44556677888999999999985 56543221 111122222
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.....+++++||++++|+++++++|..
T Consensus 298 ~~~~~~~i~~iSAktg~GI~eL~~~L~~ 325 (335)
T PRK12299 298 LAALGGPVFLISAVTGEGLDELLRALWE 325 (335)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 2112356999999999999999988863
No 198
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.62 E-value=1.4e-15 Score=121.97 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=83.9
Q ss_pred EecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHHHHH
Q psy12244 34 IAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVT 113 (257)
Q Consensus 34 vG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 113 (257)
+|..++|||||+++++.. .. .. +...|+........+.. ++....+.||||||+++|...+.
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f------------~~--~~~~Tig~~~~~~~~~~--~~~~~~l~iwDt~G~e~~~~l~~ 62 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EF------------EK--KYVATLGVEVHPLVFHT--NRGPIRFNVWDTAGQEKFGGLRD 62 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CC------------CC--CCCCceeEEEEEEEEEE--CCEEEEEEEEECCCchhhhhhhH
Confidence 699999999999999642 11 11 11233332222222322 44568999999999999999999
Q ss_pred HhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEeccccc
Q psy12244 114 RSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRC 164 (257)
Q Consensus 114 ~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g 164 (257)
.+++.+|++|+|+|+++ +|+...........+.+. ...+++++||++|
T Consensus 63 ~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~---~~~~~~e~SAk~~ 139 (200)
T smart00176 63 GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRK---KNLQYYDISAKSN 139 (200)
T ss_pred HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHH---cCCEEEEEeCCCC
Confidence 99999999999999998 665332111111122222 2356999999999
Q ss_pred ccccccccccCC
Q psy12244 165 FSCADCHRSLDS 176 (257)
Q Consensus 165 ~gi~~l~~~i~~ 176 (257)
.||+++|++|..
T Consensus 140 ~~v~~~F~~l~~ 151 (200)
T smart00176 140 YNFEKPFLWLAR 151 (200)
T ss_pred CCHHHHHHHHHH
Confidence 999999998874
No 199
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.62 E-value=1.7e-15 Score=122.04 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=78.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+++|++..... ....+.|.+.....+.+.. ...+.||||||+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~-----~~~~~i~Dt~G~~ 100 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYA--------------EDQLFATLDPTTRRLRLPD-----GREVLLTDTVGFI 100 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhcc--------------CCccceeccceeEEEEecC-----CceEEEeCCCccc
Confidence 35689999999999999999997643111 0112334444444444432 1378999999984
Q ss_pred cc-H-------HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 107 DF-S-------NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 107 ~~-~-------~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
+. . ......+..+|++++|+|++. +|+..... .. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~---~~---~~ 174 (204)
T cd01878 101 RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE---LE---ER 174 (204)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH---HH---HH
Confidence 31 1 112234567999999999986 33322111 11 11
Q ss_pred hCCCccceEEecccccccccccccccC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.....+++++||++|.|+++++++|.
T Consensus 175 ~~~~~~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 175 LEAGRPDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred hhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 222345799999999999999988765
No 200
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.62 E-value=1.8e-15 Score=118.67 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=82.1
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN 110 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 110 (257)
|+++|.+|+|||||+++|+...- .. +......... ...+.+ ++....+.+|||||++.|..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~----~~~~~~~~i~Dt~G~~~~~~ 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PE------------DYVPTVFENY-SADVEV----DGKPVELGLWDTAGQEDYDR 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CC------------CCCCcEEeee-eEEEEE----CCEEEEEEEEECCCCcccch
Confidence 58999999999999999975321 10 0011111111 111222 34557899999999999988
Q ss_pred HHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHHHHHHH
Q psy12244 111 EVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EACEEQLQ 146 (257)
Q Consensus 111 ~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~~~~~~ 146 (257)
.....+..+|++|+|+|.++ +|+..... .+..+++.
T Consensus 62 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 62 LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHH
Confidence 88888899999999999987 45432100 00111233
Q ss_pred HHhCCCccceEEecccccccccccccccCC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.++ ..+++++||++|.|++++++.+..
T Consensus 142 ~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 142 KRIG--AVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred HHcC--CcEEEEecCCCCCCHHHHHHHHHH
Confidence 3323 236899999999999999987764
No 201
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.62 E-value=1.4e-15 Score=136.09 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=85.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|++....+.. ...+.|.+.....+.+.+ ..+.+|||||+.+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-------------~~~gtT~d~~~~~i~~~g------~~i~l~DT~G~~~ 275 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVT-------------DIAGTTRDVIEEHINLDG------IPLRLIDTAGIRE 275 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccC-------------CCCCcccccEEEEEEECC------eEEEEEeCCCCCC
Confidence 357999999999999999999764332211 235667666666666655 6899999999976
Q ss_pred cHH--------HHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 108 FSN--------EVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~--------~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+.. .....+..+|++++|+|++. +|+..... .. .....+
T Consensus 276 ~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~------~~---~~~~~~ 346 (449)
T PRK05291 276 TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEID------LE---EENGKP 346 (449)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccch------hh---hccCCc
Confidence 432 23446788999999999975 23221100 00 112346
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|+++|+++|..
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~ 367 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKE 367 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHH
Confidence 899999999999999998874
No 202
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=4.7e-15 Score=115.55 Aligned_cols=126 Identities=12% Similarity=0.131 Sum_probs=83.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|+.|+|||||+++|.+.... .. .+. +.........+ .+....+.+|||||+..+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~-------------~~~-~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~ 61 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--EN-------------VPR-VLPEITIPADV----TPERVPTTIVDTSSRPQDR 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cc-------------CCC-cccceEeeeee----cCCeEEEEEEeCCCchhhh
Confidence 6899999999999999999763211 00 000 00000111111 2344789999999999888
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH----HHHHHHHHHHhCCCccc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP----EACEEQLQTLFNIDKKS 155 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~----~~~~~~~~~~~~~~~~~ 155 (257)
..+...+..+|++++|+|+++ +|+.+... ++....+...+.. ..+
T Consensus 62 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~ 140 (166)
T cd01893 62 ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-IET 140 (166)
T ss_pred HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-ccE
Confidence 877888899999999999887 66643321 1112222222221 136
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++++.+.+
T Consensus 141 ~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 141 CVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred EEEeccccccCHHHHHHHHHH
Confidence 899999999999999987764
No 203
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.61 E-value=1.9e-15 Score=125.17 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=84.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceE-eceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV-KAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|..|+|||||+++|+...- .. +...|+ +.....+.+ ++..+.+.||||+|+++|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f--~~--------------~y~pTi~d~~~k~~~i----~~~~~~l~I~Dt~G~~~~ 61 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF--EE--------------QYTPTIEDFHRKLYSI----RGEVYQLDILDTSGNHPF 61 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC--CC--------------CCCCChhHhEEEEEEE----CCEEEEEEEEECCCChhh
Confidence 699999999999999999975221 10 001111 111222222 345578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc---------------------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ---------------------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~---------------------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
......++..+|++|+|+|.++ +|+... .+...+++.+.+
T Consensus 62 ~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~-~~v~~~ei~~~~ 140 (247)
T cd04143 62 PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP-REVQRDEVEQLV 140 (247)
T ss_pred hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc-cccCHHHHHHHH
Confidence 8877778889999999999876 222110 011223344443
Q ss_pred C-CCccceEEecccccccccccccccCC
Q psy12244 150 N-IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~-~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+ ....+++++||++|.|++++++.|..
T Consensus 141 ~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 141 GGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred HhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3 22456999999999999999998874
No 204
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.61 E-value=6.6e-16 Score=117.14 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=72.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc---
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV--- 106 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~--- 106 (257)
+|+++|++|+|||||+++|++... ....|. .+.+ .-.+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~------------------~~~~t~-----~~~~---------~~~~iDt~G~~~~~ 49 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI------------------LYKKTQ-----AVEY---------NDGAIDTPGEYVEN 49 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc------------------ccccce-----eEEE---------cCeeecCchhhhhh
Confidence 699999999999999999964211 001111 1222 12589999983
Q ss_pred -ccHHHHHHhhhhcceEEEEEecCc-----------------------cCCCCCC-HHHHHHHHHHHhCCCccceEEecc
Q psy12244 107 -DFSNEVTRSLAACQGVVLLIDANQ-----------------------VDLKNAN-PEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 107 -~~~~~~~~~~~~aD~~ilVvd~~~-----------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
.+...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+..+ ..+++++||
T Consensus 50 ~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa 127 (142)
T TIGR02528 50 RRLYSALIVTAADADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAG--AEPIFEISS 127 (142)
T ss_pred HHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccCHHHHHHHHHHcC--CCcEEEEec
Confidence 233333446789999999999987 6764321 1111122222222 236899999
Q ss_pred cccccccccccccC
Q psy12244 162 RRCFSCADCHRSLD 175 (257)
Q Consensus 162 ~~g~gi~~l~~~i~ 175 (257)
++|.|++++++++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999988764
No 205
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=1.7e-15 Score=119.20 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=91.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|..|+|||||+++|.. +... ....|.......+.+.+ +.+.+||.+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~---------------~~~pT~g~~~~~i~~~~------~~~~~~d~gG~ 68 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEIS---------------ETIPTIGFNIEEIKYKG------YSLTIWDLGGQ 68 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEE---------------EEEEESSEEEEEEEETT------EEEEEEEESSS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--cccc---------------ccCcccccccceeeeCc------EEEEEEecccc
Confidence 6778999999999999999999953 1110 12234444455566655 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHH-HHhC-C
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQ-TLFN-I 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~-~~~~-~ 151 (257)
..+...+..++..+|++|+|+|+.+ .|+.++- .++..+.+. ..+. .
T Consensus 69 ~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~ 148 (175)
T PF00025_consen 69 ESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNK 148 (175)
T ss_dssp GGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSS
T ss_pred ccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccC
Confidence 9999999999999999999999997 5655432 222222221 1111 2
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....++++||++|+|+.+.+++|.
T Consensus 149 ~~~~v~~~sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 149 RPWSVFSCSAKTGEGVDEGLEWLI 172 (175)
T ss_dssp SCEEEEEEBTTTTBTHHHHHHHHH
T ss_pred CceEEEeeeccCCcCHHHHHHHHH
Confidence 234589999999999999888775
No 206
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.61 E-value=2.3e-15 Score=117.46 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=82.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|++..-.. +..+. ..+.....+.. .+....+.+|||||+++|.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~--------------~~~~~-~~~~~~~~~~~----~~~~~~l~~~D~~g~~~~~ 62 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPT--------------EYVPT-VFDNYSATVTV----DGKQVNLGLWDTAGQEEYD 62 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCc-eeeeeEEEEEE----CCEEEEEEEEeCCCccccc
Confidence 68999999999999999997633200 00000 11111111222 3445789999999999887
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHH----------HHHHHHHHh
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEA----------CEEQLQTLF 149 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~----------~~~~~~~~~ 149 (257)
......++.+|++++|+|+++ +|+.+..... ..++..+..
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~ 142 (171)
T cd00157 63 RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA 142 (171)
T ss_pred ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHH
Confidence 777777789999999999987 5543322110 011112211
Q ss_pred -CCCccceEEecccccccccccccccC
Q psy12244 150 -NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 -~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+++++||++|.|++++++.|.
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 143 KEIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred HHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 22233799999999999999988765
No 207
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=2.4e-15 Score=130.30 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=81.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+|+|++.. .+. ....+.|.++....+.+.+ ...+.||||||+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v-------------~~~~~tT~d~~~~~i~~~~-----~~~i~l~DT~G~~ 248 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYA-------------ADQLFATLDPTTRRLDLPD-----GGEVLLTDTVGFI 248 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eee-------------ccCCccccCCEEEEEEeCC-----CceEEEEecCccc
Confidence 44789999999999999999997643 111 1123456666666666532 1578999999982
Q ss_pred c---------cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHH
Q psy12244 107 D---------FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQT 147 (257)
Q Consensus 107 ~---------~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~ 147 (257)
+ |. .+...+..||++++|+|+++ +|+... .. +..
T Consensus 249 ~~l~~~lie~f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~----v~~ 321 (351)
T TIGR03156 249 RDLPHELVAAFR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PR----IER 321 (351)
T ss_pred ccCCHHHHHHHH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--Hh----HHH
Confidence 2 22 23345788999999999985 333211 11 111
Q ss_pred HhCCCccceEEecccccccccccccccC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
... ...+++++||++|.|+++|++.|.
T Consensus 322 ~~~-~~~~~i~iSAktg~GI~eL~~~I~ 348 (351)
T TIGR03156 322 LEE-GYPEAVFVSAKTGEGLDLLLEAIA 348 (351)
T ss_pred HHh-CCCCEEEEEccCCCCHHHHHHHHH
Confidence 111 113589999999999999988775
No 208
>KOG0465|consensus
Probab=99.61 E-value=6.8e-16 Score=136.58 Aligned_cols=125 Identities=41% Similarity=0.699 Sum_probs=112.1
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
..|.++.+||.|.-|.++|||||.+++++..+.+... .....+|....|+++|+|+......+.|.. +.+
T Consensus 33 ~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~------~~i 106 (721)
T KOG0465|consen 33 RIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD------YRI 106 (721)
T ss_pred cCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc------cee
Confidence 3455689999999999999999999999988877655 446789999999999999999999999986 999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++||||||.+|..+..++++..|++++|+|+.. ||.-++++-..++++...++.
T Consensus 107 NiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~ 186 (721)
T KOG0465|consen 107 NIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNH 186 (721)
T ss_pred EEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCC
Confidence 999999999999999999999999999999987 888888889999999888764
Q ss_pred C
Q psy12244 152 D 152 (257)
Q Consensus 152 ~ 152 (257)
.
T Consensus 187 ~ 187 (721)
T KOG0465|consen 187 K 187 (721)
T ss_pred c
Confidence 3
No 209
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=2.5e-15 Score=117.57 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=87.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+++|+...-.. .+..+.+........+.+ ++....+.+||++|.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~-------------~~~~~T~~~~~~~~~~~~----~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSL-------------NAYSPTIKPRYAVNTVEV----YGQEKYLILREVGEDE 65 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCc-------------ccCCCccCcceEEEEEEE----CCeEEEEEEEecCCcc
Confidence 56789999999999999999996522110 011111111111122333 3344678999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCH--HHHHHHHHHHhCCCccce
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANP--EACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (257)
.+......+++.+|++++|+|+++ +|+.+... ....+++++.++.. ++
T Consensus 66 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~ 143 (169)
T cd01892 66 VAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP--PP 143 (169)
T ss_pred cccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCC--CC
Confidence 988777888899999999999977 45432210 11123444444432 36
Q ss_pred EEecccccccccccccccCCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+++||++|.|++++++.+...
T Consensus 144 ~~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 144 LHFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred EEEEeccCccHHHHHHHHHHH
Confidence 899999999999999887643
No 210
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=3.7e-15 Score=116.44 Aligned_cols=139 Identities=19% Similarity=0.211 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccE
Q psy12244 16 KATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEY 95 (257)
Q Consensus 16 ~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~ 95 (257)
++..++++|....+.|+++|++|+|||||+|+|++..... +.+..+|.|..+++..+. .
T Consensus 12 sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA------------rtSktPGrTq~iNff~~~--~------- 70 (200)
T COG0218 12 SAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA------------RTSKTPGRTQLINFFEVD--D------- 70 (200)
T ss_pred ecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCccee------------ecCCCCCccceeEEEEec--C-------
Confidence 4556778898999999999999999999999998755322 234567888876554432 2
Q ss_pred EEEEeCCCCCcc----------cHHHHHHhh---hhcceEEEEEecCc--------------------------cCCCCC
Q psy12244 96 LLNLIDTPGHVD----------FSNEVTRSL---AACQGVVLLIDANQ--------------------------VDLKNA 136 (257)
Q Consensus 96 ~~~liDtpG~~~----------~~~~~~~~~---~~aD~~ilVvd~~~--------------------------~D~~~~ 136 (257)
.+.|+|.||+.- ....+..++ ....++++++|+.. +|+...
T Consensus 71 ~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 71 ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK 150 (200)
T ss_pred cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh
Confidence 378999999743 223333344 23677999999998 777553
Q ss_pred C-HHHHHHHHHHHhCCCcc-c--eEEecccccccccccccccC
Q psy12244 137 N-PEACEEQLQTLFNIDKK-S--VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 137 ~-~~~~~~~~~~~~~~~~~-~--~i~iSa~~g~gi~~l~~~i~ 175 (257)
. ..+.+..+++.+..... . ++..|+.++.|++++.+.|.
T Consensus 151 ~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~ 193 (200)
T COG0218 151 SERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKIL 193 (200)
T ss_pred hHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHH
Confidence 2 44555666655533221 1 78889999999999988776
No 211
>PRK04213 GTP-binding protein; Provisional
Probab=99.60 E-value=3e-15 Score=120.32 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=79.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.++|+++|++|+|||||+|+|++... .....++.|.... .+.+ ..+.+|||||+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~--------------~~~~~~~~t~~~~--~~~~--------~~~~l~Dt~G~ 62 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV--------------RVGKRPGVTRKPN--HYDW--------GDFILTDLPGF 62 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--------------ccCCCCceeeCce--EEee--------cceEEEeCCcc
Confidence 3457899999999999999999965221 1112345554422 2222 25889999994
Q ss_pred -----------cccHHHHHHh----hhhcceEEEEEecCc-------------------------------------cCC
Q psy12244 106 -----------VDFSNEVTRS----LAACQGVVLLIDANQ-------------------------------------VDL 133 (257)
Q Consensus 106 -----------~~~~~~~~~~----~~~aD~~ilVvd~~~-------------------------------------~D~ 133 (257)
+.|...+..+ +..+|++++|+|+.. +|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl 142 (201)
T PRK04213 63 GFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK 142 (201)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 3344433333 345689999999842 444
Q ss_pred CCCCHHHHHHHHHHHhCCC------ccceEEecccccccccccccccCC
Q psy12244 134 KNANPEACEEQLQTLFNID------KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~------~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.... .+..+++.+.++.. ..+++++||++| |+++++++|..
T Consensus 143 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~ 189 (201)
T PRK04213 143 IKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRK 189 (201)
T ss_pred cCcH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHH
Confidence 3222 22344555555541 125899999999 99999998873
No 212
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=7.5e-15 Score=129.49 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=86.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
..|+++|.+|||||||+++|+.....+. ..+..|..+....+.+.. ...+.|+||||+..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa--------------~ypfTTl~PnlG~v~~~~-----~~~~~laD~PGlieg 219 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIA--------------NYHFTTLVPNLGVVETDD-----GRSFVMADIPGLIEG 219 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccc--------------cCCcceeceEEEEEEEeC-----CceEEEEECCCCccc
Confidence 4799999999999999999976432221 123456666666666641 16799999999743
Q ss_pred ------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHHH
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQLQ 146 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~~ 146 (257)
+.......+..+|++++|+|++. +|+.. ..+..+.+.
T Consensus 220 a~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~--~~e~l~~l~ 297 (424)
T PRK12297 220 ASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE--AEENLEEFK 297 (424)
T ss_pred ccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC--CHHHHHHHH
Confidence 33445666778999999999952 55422 122334444
Q ss_pred HHhCCCccceEEecccccccccccccccC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.++ .+++++||++|+|+++|+++|.
T Consensus 298 ~~l~---~~i~~iSA~tgeGI~eL~~~L~ 323 (424)
T PRK12297 298 EKLG---PKVFPISALTGQGLDELLYAVA 323 (424)
T ss_pred HHhC---CcEEEEeCCCCCCHHHHHHHHH
Confidence 4444 4699999999999999988876
No 213
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.60 E-value=3.4e-15 Score=115.02 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=82.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+.... ... ....+.+.....+.+ .+..+.+.+||+||+.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~-------------~~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~ 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEE-------------YDPTIEDSYRKTIVV----DGETYTLDILDTAGQEEFS 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcC-------------cCCChhHeEEEEEEE----CCEEEEEEEEECCChHHHH
Confidence 589999999999999999975331 110 000011111112222 2334789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
......++.+|++++|+|.++ +|+.... ..+...++...++ .++
T Consensus 62 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~ 138 (160)
T cd00876 62 AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG---CPF 138 (160)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC---CcE
Confidence 888889999999999999876 5543311 1111122222222 579
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 139 ~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 139 IETSAKDNINIDEVFKLLV 157 (160)
T ss_pred EEeccCCCCCHHHHHHHHH
Confidence 9999999999999988775
No 214
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.60 E-value=4.4e-15 Score=139.95 Aligned_cols=126 Identities=18% Similarity=0.268 Sum_probs=92.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|++.... .....|.|.+.....+.+.+ +.+.+|||||+.+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--------------vgn~pGvTve~k~g~~~~~~------~~i~lvDtPG~ys 62 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR--------------VGNWAGVTVERKEGQFSTTD------HQVTLVDLPGTYS 62 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--------------cCCCCCceEeeEEEEEEcCc------eEEEEEECCCccc
Confidence 357999999999999999999653221 12246788877777776655 7899999999987
Q ss_pred cHHH----------HHHhh--hhcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhC
Q psy12244 108 FSNE----------VTRSL--AACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFN 150 (257)
Q Consensus 108 ~~~~----------~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~ 150 (257)
+... ....+ ..+|++++|+|+++ +|+.+. ......+++++.++
T Consensus 63 l~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred cccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 6421 11122 36899999999997 676432 33444556666665
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|++++||++|+|++++++.+..
T Consensus 143 ---~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 143 ---CPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred ---CCEEEEEeecCCCHHHHHHHHHH
Confidence 46999999999999999988864
No 215
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.60 E-value=9.2e-15 Score=115.32 Aligned_cols=126 Identities=19% Similarity=0.278 Sum_probs=84.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|++|+|||||+++|+..... .. ..+. +.......+.+ .+..+.+.+|||||+.+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~------------~~~t-~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~ 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ES------------YYPT-IENTFSKIIRY----KGQDYHLEIVDTAGQDEY 62 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cc------------cCcc-hhhhEEEEEEE----CCEEEEEEEEECCChHhh
Confidence 57999999999999999999753211 00 0000 00001111222 233467899999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
......++..+|++++|+|.++ +|+...+ .....+.+.+.++ .+
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~ 139 (180)
T cd04137 63 SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG---AA 139 (180)
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC---Ce
Confidence 8888888999999999999886 4543211 1111223333333 56
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++++++..
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 140 FLESSARENENVEEAFELLIE 160 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 899999999999999988874
No 216
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.59 E-value=1.3e-14 Score=110.77 Aligned_cols=126 Identities=23% Similarity=0.358 Sum_probs=80.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|+... .. .+..++++.+.....+.+ ++..+.+.+|||||+.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~-------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FI-------------TEYKPGTTRNYVTTVIEE----DGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-Cc-------------CcCCCCceeeeeEEEEEE----CCEEEEEEEEECCCcccc
Confidence 579999999999999999997643 11 122344555544433433 233467899999999998
Q ss_pred HHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCHHHHHHHHHHHh-CCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANPEACEEQLQTLF-NIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~~~~~~~~~~~~-~~~~~~ 155 (257)
...+......++.++.++|... +|+...+ ...+....+ .....+
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~ 140 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK---LKTHVAFLFAKLNGEP 140 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch---hhHHHHHHHhhccCCc
Confidence 7666666666666665555543 3433222 122222212 122346
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|+++++++|.
T Consensus 141 ~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 141 IIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred eEEeecCCCCCHHHHHHHhh
Confidence 99999999999999988764
No 217
>KOG0087|consensus
Probab=99.59 E-value=1.7e-15 Score=118.08 Aligned_cols=131 Identities=17% Similarity=0.217 Sum_probs=95.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|.+++|||-|+.++.. +.+..+....+.+.+.+..+.. +++..+.+||||+|+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftr--------------nEF~~~SksTIGvef~t~t~~v----d~k~vkaqIWDTAGQ 73 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTR--------------NEFSLESKSTIGVEFATRTVNV----DGKTVKAQIWDTAGQ 73 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcc--------------cccCcccccceeEEEEeeceee----cCcEEEEeeecccch
Confidence 4678899999999999999999943 3344444555555555544444 667789999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
++|...+..+++.|-++++|+|.+. +|+...+ ....++.+.+.......
T Consensus 74 ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr-aV~te~~k~~Ae~~~l~ 152 (222)
T KOG0087|consen 74 ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR-AVPTEDGKAFAEKEGLF 152 (222)
T ss_pred hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc-ccchhhhHhHHHhcCce
Confidence 9999999999999999999999987 5553311 11112222222223345
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||..+.|+++.|+.+.
T Consensus 153 f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 153 FLETSALDATNVEKAFERVL 172 (222)
T ss_pred EEEecccccccHHHHHHHHH
Confidence 89999999999998886654
No 218
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.59 E-value=5.5e-15 Score=139.41 Aligned_cols=131 Identities=17% Similarity=0.226 Sum_probs=91.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+|+|++....+.. ...|.|.+.....+.+.+ ..+.||||||+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-------------~~~gtT~d~~~~~~~~~~------~~~~liDTaG~~ 509 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-------------DLAGTTRDPVDEIVEIDG------EDWLFIDTAGIK 509 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC-------------CCCCCCcCcceeEEEECC------CEEEEEECCCcc
Confidence 4578999999999999999999765432211 245667666555566655 568899999974
Q ss_pred c---------cHHH--HHHhhhhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 107 D---------FSNE--VTRSLAACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 107 ~---------~~~~--~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
+ +... ...+++.+|++++|+|++. +|+.+.. .+...+.+...
T Consensus 510 ~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~ 589 (712)
T PRK09518 510 RRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTE 589 (712)
T ss_pred cCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHh
Confidence 2 2111 2345688999999999987 6765432 23333344443
Q ss_pred h-CCCccceEEecccccccccccccccCC
Q psy12244 149 F-NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~-~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+ .....+++++||++|.|++++++.+..
T Consensus 590 l~~~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 590 FDRVTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred ccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3 334567899999999999999988763
No 219
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.58 E-value=2.7e-15 Score=117.72 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=81.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|+.|+|||||+.+++... ... +..+ ...+.....+.. ++....+.+|||||+..|.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~------------~~~~-t~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~ 62 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPT------------EYVP-TAFDNFSVVVLV----DGKPVRLQLCDTAGQDEFD 62 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC------------CCCC-ceeeeeeEEEEE----CCEEEEEEEEECCCChhhc
Confidence 68999999999999999986521 100 0011 111111111222 3445788999999999988
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--------------HHHHHHHH
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------------PEACEEQL 145 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------------~~~~~~~~ 145 (257)
..+...++.+|++|+|+|.++ +|+.... ..+....+
T Consensus 63 ~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 63 KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred cccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 887788899999999999987 4442210 00011122
Q ss_pred HHHhCCCccceEEecccccccccccccccC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+.++ ..+++++||++|.|++++++.+.
T Consensus 143 a~~~~--~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIG--ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHhC--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 22222 23699999999999999987654
No 220
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.58 E-value=1.1e-14 Score=118.50 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=86.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..++|||||+.+|+... +..+.. .|+...+. .+.+ ++....+.||||+|++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--------------f~~~y~--pTi~~~~~~~~~~----~~~~v~L~iwDt~G~e~ 61 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--------------YPGSYV--PTVFENYTASFEI----DKRRIELNMWDTSGSSY 61 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--------------CCCccC--CccccceEEEEEE----CCEEEEEEEEeCCCcHH
Confidence 479999999999999999996521 111111 12211111 1222 45568899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--H------------HHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--P------------EACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~------------~~~~~ 143 (257)
|......+++.+|++|+|+|.++ +|+.... . .+..+
T Consensus 62 ~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHH
Confidence 99888889999999999999998 6664311 0 01112
Q ss_pred HHHHHhCCCccceEEeccccccc-ccccccccCCC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFS-CADCHRSLDST 177 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~~~ 177 (257)
.+.+.++ ..+++++||+++.| |+++|+.....
T Consensus 142 ~~ak~~~--~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 142 VLAKQVG--AVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHcC--CCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 2222222 34799999999985 99999877643
No 221
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=1.2e-14 Score=127.39 Aligned_cols=128 Identities=17% Similarity=0.232 Sum_probs=87.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
..|+|+|.+|||||||+|+|+..... ....++.|..+....+.+.. ...+.|+||||+..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~--------------vs~~p~TT~~p~~Giv~~~~-----~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPK--------------VADYPFTTLVPNLGVVRVDD-----ERSFVVADIPGLIEG 220 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccc--------------ccCCCCCccCcEEEEEEeCC-----CcEEEEEeCCCcccc
Confidence 36999999999999999999754321 12234566666666666543 13589999999854
Q ss_pred ------cHHHHHHhhhhcceEEEEEecC---c--------------------------------cCCCCCC-HHHHHHHH
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDAN---Q--------------------------------VDLKNAN-PEACEEQL 145 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~---~--------------------------------~D~~~~~-~~~~~~~~ 145 (257)
+...+...+..+|++++|+|+. . +|+.... ..+..+++
T Consensus 221 a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l 300 (390)
T PRK12298 221 ASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAI 300 (390)
T ss_pred ccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHH
Confidence 3345566788999999999987 1 5553211 11222233
Q ss_pred HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.++. ..+++++||+++.|+++|++.|..
T Consensus 301 ~~~~~~-~~~Vi~ISA~tg~GIdeLl~~I~~ 330 (390)
T PRK12298 301 VEALGW-EGPVYLISAASGLGVKELCWDLMT 330 (390)
T ss_pred HHHhCC-CCCEEEEECCCCcCHHHHHHHHHH
Confidence 333222 135899999999999999887763
No 222
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.57 E-value=1.1e-14 Score=114.23 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=81.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
++|+++|+.++|||||+++|++..-. . . ...|.... ...+.+ ++....+.+|||||+++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~------------~--~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--E------------V--YVPTVFENYVADIEV----DGKQVELALWDTAGQED 61 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--C------------C--CCCccccceEEEEEE----CCEEEEEEEEeCCCchh
Confidence 57999999999999999999753211 0 0 00111111 112222 34457889999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--H------------HHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--E------------ACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--~------------~~~~ 143 (257)
|.......+..+|++++|+|.++ +|+.+... . ...+
T Consensus 62 ~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~ 141 (175)
T cd01870 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGR 141 (175)
T ss_pred hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHH
Confidence 88777778899999999999885 34322110 0 0011
Q ss_pred HHHHHhCCCccceEEecccccccccccccccC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++... ....+++++||++|.|+++++++|.
T Consensus 142 ~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 142 DMANK--IGAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred HHHHH--cCCcEEEEeccccCcCHHHHHHHHH
Confidence 11111 1233689999999999999998775
No 223
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.57 E-value=2.1e-14 Score=111.16 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=86.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++|....- . .+..+.+..+.....+.. ++..+.+.+||++|+++|.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~--~------------~~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~g~~~~~ 62 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF--P------------ENYIPTIGIDSYSKEVSI----DGKPVNLEIWDTSGQERFD 62 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST--T------------SSSETTSSEEEEEEEEEE----TTEEEEEEEEEETTSGGGH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc--c------------cccccccccccccccccc----ccccccccccccccccccc
Confidence 589999999999999999976321 1 111111212222233333 4566889999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++|+|+|.++ .|+.+.. ..+..+++.+.++ .+++
T Consensus 63 ~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~---~~~~ 139 (162)
T PF00071_consen 63 SLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG---VPYF 139 (162)
T ss_dssp HHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT---SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC---CEEE
Confidence 888888999999999999998 4543311 1112233333333 6799
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||+++.|+.+++..+.
T Consensus 140 e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 140 EVSAKNGENVKEIFQELI 157 (162)
T ss_dssp EEBTTTTTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999887654
No 224
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.57 E-value=1.7e-14 Score=123.98 Aligned_cols=126 Identities=16% Similarity=0.215 Sum_probs=84.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+..|+++|.+|+|||||+++|......+. ..+..|..+....+.+.. ...+.|+||||+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va--------------~y~fTT~~p~ig~v~~~~-----~~~~~i~D~PGli~ 217 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIA--------------DYPFTTLVPNLGVVRVDD-----GRSFVIADIPGLIE 217 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCcccc--------------CCCCCccCCEEEEEEeCC-----ceEEEEEeCCCccc
Confidence 35789999999999999999975332211 112345555555555432 25789999999853
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCC-HHHHHHH
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNAN-PEACEEQ 144 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~-~~~~~~~ 144 (257)
+...+...+..+|++++|+|++. +|+.... .++..++
T Consensus 218 ~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~ 297 (329)
T TIGR02729 218 GASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKE 297 (329)
T ss_pred CCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHH
Confidence 34455667778999999999983 5553321 2222233
Q ss_pred HHHHhCCCccceEEecccccccccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.+.++ .+++++||++++|+++++++|.
T Consensus 298 l~~~~~---~~vi~iSAktg~GI~eL~~~I~ 325 (329)
T TIGR02729 298 LKKALG---KPVFPISALTGEGLDELLYALA 325 (329)
T ss_pred HHHHcC---CcEEEEEccCCcCHHHHHHHHH
Confidence 333222 4699999999999999988775
No 225
>KOG0091|consensus
Probab=99.56 E-value=3.9e-15 Score=111.30 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=88.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
-.++.++|.+-+|||+|+..+.. |... +-.++.+.++.-...++.. .+...++.+|||+|+++
T Consensus 8 qfrlivigdstvgkssll~~ft~--gkfa------------elsdptvgvdffarlie~~---pg~riklqlwdtagqer 70 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTE--GKFA------------ELSDPTVGVDFFARLIELR---PGYRIKLQLWDTAGQER 70 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhc--Cccc------------ccCCCccchHHHHHHHhcC---CCcEEEEEEeeccchHH
Confidence 35788999999999999999854 2211 1112223333222222222 45568999999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
|...+.++++++=++++|+|.++ .|+...+ -.+..+.+++.+|+
T Consensus 71 frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-- 148 (213)
T KOG0091|consen 71 FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-- 148 (213)
T ss_pred HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc--
Confidence 99999999999999999999998 5554322 11222334444454
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++++||++|.||++.+..|.
T Consensus 149 -~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 149 -AFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred -eEEEecccCCCcHHHHHHHHH
Confidence 499999999999998776664
No 226
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.56 E-value=9.1e-15 Score=113.70 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=78.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-c
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-F 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-~ 108 (257)
+|+++|++|+|||||+++++...- .. .+ .+.. .......+.+ ++....+.+|||||+.. +
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~--------~~----~~t~-~~~~~~~~~~----~~~~~~~~i~D~~g~~~~~ 61 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IG--------EY----DPNL-ESLYSRQVTI----DGEQVSLEILDTAGQQQAD 61 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--cc--------cc----CCCh-HHhceEEEEE----CCEEEEEEEEECCCCcccc
Confidence 489999999999999999975211 00 00 0000 0000111222 33446789999999985 3
Q ss_pred HHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.......++.+|++|+|+|+++ +|+.... ..+....+.+.++ .
T Consensus 62 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---~ 138 (165)
T cd04146 62 TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG---C 138 (165)
T ss_pred cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC---C
Confidence 4556778899999999999987 4432111 0111222333333 4
Q ss_pred ceEEeccccc-ccccccccccC
Q psy12244 155 SVLRIWHRRC-FSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g-~gi~~l~~~i~ 175 (257)
+++++||++| .|++++|+.+.
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHH
Confidence 6999999999 59999988775
No 227
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.56 E-value=3.3e-14 Score=115.52 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=86.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.....+|+++|+.|+|||||+++++... ... ....|+........+.. ++....+.+|||||
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~--~~~~i~i~~~Dt~g 67 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGE--FEK--------------KYIPTLGVEVHPLKFYT--NCGPICFNVWDTAG 67 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCC--CCC--------------CCCCccceEEEEEEEEE--CCeEEEEEEEECCC
Confidence 3445789999999999999998875421 110 11123332233333322 44558999999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCH-HHHHHHHHHHhCCCcc
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANP-EACEEQLQTLFNIDKK 154 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~-~~~~~~~~~~~~~~~~ 154 (257)
+.+|...+...+..+|++++|+|.++ +|+.+... .+.. ++.+. ...
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~~---~~~ 143 (215)
T PTZ00132 68 QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQI-TFHRK---KNL 143 (215)
T ss_pred chhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHH-HHHHH---cCC
Confidence 99998887778889999999999974 44432111 1111 22222 234
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.++++||++|.|+++++.+|.+
T Consensus 144 ~~~e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 144 QYYDISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred EEEEEeCCCCCCHHHHHHHHHH
Confidence 6899999999999998877763
No 228
>KOG0466|consensus
Probab=99.56 E-value=7.4e-16 Score=126.39 Aligned_cols=188 Identities=20% Similarity=0.238 Sum_probs=128.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEe-ecc----------------
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRY-TSI---------------- 89 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~---------------- 89 (257)
-..||+.+||+.+||||++.++.+- ..-+|+.|-++.+|+..+++.... +..
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv-----------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~ 105 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGV-----------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSS 105 (466)
T ss_pred eeeeecceeccccCcceeeeeeccc-----------eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCC
Confidence 3568999999999999999998431 234677888899999988876432 110
Q ss_pred ------c-----CC---ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------
Q psy12244 90 ------L-----DG---EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------- 130 (257)
Q Consensus 90 ------~-----~~---~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------- 130 (257)
| .+ --.++.|+|+|||.-++..|++++...|+++|++.+++
T Consensus 106 k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiiil 185 (466)
T KOG0466|consen 106 KEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIIL 185 (466)
T ss_pred CCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEE
Confidence 0 00 02478899999999999999999999999999999998
Q ss_pred ---cCCCCCC-HHHHHHHHHHHh---CCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCc-------
Q psy12244 131 ---VDLKNAN-PEACEEQLQTLF---NIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDI------- 196 (257)
Q Consensus 131 ---~D~~~~~-~~~~~~~~~~~~---~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~------- 196 (257)
+|+..+. ..+..++++++. ....+|++|+||.-+.|++.+.++|.+ .+|.|.++...+..+
T Consensus 186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivk-----kIPvPvRdf~s~prlIVIRSFD 260 (466)
T KOG0466|consen 186 QNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVK-----KIPVPVRDFTSPPRLIVIRSFD 260 (466)
T ss_pred echhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHh-----cCCCCccccCCCCcEEEEEeec
Confidence 6664332 345555667665 345679999999999999999999983 233333322221111
Q ss_pred ------chhhhcceeeEeeecccchhhHHHHHHhhCCccc
Q psy12244 197 ------PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS 230 (257)
Q Consensus 197 ------~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~ 230 (257)
.+++..+-+..|.+-.|-..+++.|-..+|.+.+
T Consensus 261 VNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~k 300 (466)
T KOG0466|consen 261 VNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTK 300 (466)
T ss_pred cCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeee
Confidence 1233344445555556655566666555665443
No 229
>PRK11058 GTPase HflX; Provisional
Probab=99.56 E-value=1.5e-14 Score=128.28 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=81.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+.|+++|.+|+|||||+|+|++..... ....+.|.+.....+.+.+ ...+.||||||+.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v--------------~~~~~tTld~~~~~i~l~~-----~~~~~l~DTaG~~ 256 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYA--------------ADQLFATLDPTLRRIDVAD-----VGETVLADTVGFI 256 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceee--------------ccCCCCCcCCceEEEEeCC-----CCeEEEEecCccc
Confidence 34679999999999999999997532211 1133456666555555543 1367899999984
Q ss_pred cc--------HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 107 DF--------SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 107 ~~--------~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
+. ...+...+..||++++|+|+++ +|+.... ....+. . .
T Consensus 257 r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-~~~~~~-~-~ 333 (426)
T PRK11058 257 RHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-EPRIDR-D-E 333 (426)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch-hHHHHH-H-h
Confidence 32 1223455688999999999986 4443211 000100 0 1
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+. ..++++||++|.|+++|++.|..
T Consensus 334 ~~~--~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 334 ENK--PIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred cCC--CceEEEeCCCCCCHHHHHHHHHH
Confidence 111 12588999999999999988873
No 230
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.56 E-value=3e-14 Score=110.06 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=80.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+|+|++........ ....+.......+.. ....+.+|||||+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~------~~~~~~liDtpG~~~ 63 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-------------KPQTTRNRIRGIYTD------DDAQIIFVDTPGIHK 63 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-------------CCCceeceEEEEEEc------CCeEEEEEECCCCCc
Confidence 4679999999999999999997643221111 111111111111111 226788999999865
Q ss_pred cH--------HHHHHhhhhcceEEEEEecCc--------------------------cCCCCC--CHHHHHHHHHHHhCC
Q psy12244 108 FS--------NEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA--NPEACEEQLQTLFNI 151 (257)
Q Consensus 108 ~~--------~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~--~~~~~~~~~~~~~~~ 151 (257)
.. ......+..+|++++|+|+.. +|+... ...+..+.++.. .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~ 141 (168)
T cd04163 64 PKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKEL--G 141 (168)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhc--c
Confidence 32 233456788999999999986 555321 122222233332 2
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++|++++.|++++++.|.
T Consensus 142 ~~~~~~~~s~~~~~~~~~l~~~l~ 165 (168)
T cd04163 142 PFAEIFPISALKGENVDELLEEIV 165 (168)
T ss_pred CCCceEEEEeccCCChHHHHHHHH
Confidence 235789999999999999988775
No 231
>KOG0073|consensus
Probab=99.55 E-value=3.6e-14 Score=106.26 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=93.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|.|+|..|+||||++++|.+..... -..|..++.....+++ +.+++||..|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~-----------------i~pt~gf~Iktl~~~~------~~L~iwDvGGq 70 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDT-----------------ISPTLGFQIKTLEYKG------YTLNIWDVGGQ 70 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccc-----------------cCCccceeeEEEEecc------eEEEEEEcCCc
Confidence 456789999999999999999996543211 1235566666677777 99999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHH--HHHHHHhCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACE--EQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~--~~~~~~~~~ 151 (257)
..+...|.+++..+|++|+|+|+.+ .|+.++- .+.+. -.+.+.+..
T Consensus 71 ~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks 150 (185)
T KOG0073|consen 71 KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKS 150 (185)
T ss_pred chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccc
Confidence 9999999999999999999999987 4444221 12222 123333344
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++-+||.+|+++.+=+++|.
T Consensus 151 ~~~~l~~cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 151 HHWRLVKCSAVTGEDLLEGIDWLC 174 (185)
T ss_pred cCceEEEEeccccccHHHHHHHHH
Confidence 556789999999988766555554
No 232
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=2.2e-14 Score=128.16 Aligned_cols=126 Identities=13% Similarity=0.210 Sum_probs=84.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
...|+|+|.+|+|||||+|+|+.....+ ...++.|+.+....+.+.. ..|.|+||||+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkI--------------adypfTTl~P~lGvv~~~~------~~f~laDtPGlie 218 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKI--------------ADYPFTTLVPNLGVVQAGD------TRFTVADVPGLIP 218 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccc--------------cccCcccccceEEEEEECC------eEEEEEECCCCcc
Confidence 3579999999999999999997533221 1234567777777777655 7899999999743
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc---------------------------------------------cCCCC
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ---------------------------------------------VDLKN 135 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~---------------------------------------------~D~~~ 135 (257)
........+..+|++|+|||++. +|+.+
T Consensus 219 gas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 219 GASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred ccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 22344566788999999999963 11110
Q ss_pred CCHHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 136 ANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+.+...+.....++|++||++++|+++|+++|.
T Consensus 299 --a~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ 336 (500)
T PRK12296 299 --ARELAEFVRPELEARGWPVFEVSAASREGLRELSFALA 336 (500)
T ss_pred --hHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 11111222222211134799999999999999988775
No 233
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.54 E-value=3.4e-14 Score=115.97 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=78.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceE--eceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV--KAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~--~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+|+++|.+|+|||||+++|+...-.. . ....+. +.....+.+ ++....+.||||||++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~-~--------------~~~~t~~~~~~~~~i~~----~~~~~~l~i~Dt~G~~~ 62 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDD-H--------------AYDASGDDDTYERTVSV----DGEESTLVVIDHWEQEM 62 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCc-c--------------CcCCCccccceEEEEEE----CCEEEEEEEEeCCCcch
Confidence 69999999999999999996421100 0 000111 111222322 33447899999999983
Q ss_pred cHHHHHHhhh-hcceEEEEEecCc-------------------------------cCCCCCCH--HHHHHHHHHHhCCCc
Q psy12244 108 FSNEVTRSLA-ACQGVVLLIDANQ-------------------------------VDLKNANP--EACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~~~~~~~~-~aD~~ilVvd~~~-------------------------------~D~~~~~~--~~~~~~~~~~~~~~~ 153 (257)
+. ....+. .+|++++|+|+++ +|+..... .+..+++...+ .
T Consensus 63 ~~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~---~ 137 (221)
T cd04148 63 WT--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVF---D 137 (221)
T ss_pred HH--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHc---C
Confidence 32 233455 8999999999987 55533211 11112233322 2
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||++|.||+++++.+..
T Consensus 138 ~~~~e~SA~~~~gv~~l~~~l~~ 160 (221)
T cd04148 138 CKFIETSAGLQHNVDELLEGIVR 160 (221)
T ss_pred CeEEEecCCCCCCHHHHHHHHHH
Confidence 46899999999999999998873
No 234
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.54 E-value=3e-14 Score=126.97 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=84.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+|+|++....+.. ..+|.|.+.....+.+++ ..+.+|||||+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-------------~~pgtTrd~~~~~i~~~g------~~v~l~DTaG~~ 262 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-------------DIKGTTRDVVEGDFELNG------ILIKLLDTAGIR 262 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccC-------------CCCCcEEEEEEEEEEECC------EEEEEeeCCCcc
Confidence 3468999999999999999999864433221 235677777666677765 788999999996
Q ss_pred ccHHH--------HHHhhhhcceEEEEEecCc-------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 107 DFSNE--------VTRSLAACQGVVLLIDANQ-------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~--------~~~~~~~aD~~ilVvd~~~-------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
++... ...+++.+|++++|+|++. +|+...+ .+.+.+.++
T Consensus 263 ~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~----~~~~~~~~~--- 335 (442)
T TIGR00450 263 EHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINS----LEFFVSSKV--- 335 (442)
T ss_pred cchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcc----hhhhhhhcC---
Confidence 64322 3456788999999999875 4443221 112222222
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++ .|++++++.+.
T Consensus 336 ~~~~~vSak~-~gI~~~~~~L~ 356 (442)
T TIGR00450 336 LNSSNLSAKQ-LKIKALVDLLT 356 (442)
T ss_pred CceEEEEEec-CCHHHHHHHHH
Confidence 3588999998 57777766665
No 235
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.52 E-value=4.4e-14 Score=109.34 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=74.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..|+|||||+.+++... .... .. .+.......+.+ ++....+.+|||+|++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~~~------------~~--~~~~~~~~~i~~----~~~~~~l~i~D~~g~~~~- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YVQL------------ES--PEGGRFKKEVLV----DGQSHLLLIRDEGGAPDA- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCCC------------CC--CCccceEEEEEE----CCEEEEEEEEECCCCCch-
Confidence 69999999999999999986521 1000 00 011111112223 344577999999999763
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH----HHHHHHHHHHhCCCcc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP----EACEEQLQTLFNIDKK 154 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~----~~~~~~~~~~~~~~~~ 154 (257)
..++.+|++++|+|.++ +|+...+. .+..+++.+. ...+
T Consensus 61 ----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~--~~~~ 134 (158)
T cd04103 61 ----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD--MKRC 134 (158)
T ss_pred ----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH--hCCC
Confidence 34577999999999998 33321110 1111223221 2235
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.||+++|+.+.
T Consensus 135 ~~~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 135 SYYETCATYGLNVERVFQEAA 155 (158)
T ss_pred cEEEEecCCCCCHHHHHHHHH
Confidence 799999999999999988765
No 236
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.4e-14 Score=130.92 Aligned_cols=126 Identities=20% Similarity=0.270 Sum_probs=93.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|+||+|||||+|+|++....+. .=+|+|++.....+.+++ +.+.++|+||..+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg--------------NwpGvTVEkkeg~~~~~~------~~i~ivDLPG~YS 62 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVG--------------NWPGVTVEKKEGKLKYKG------HEIEIVDLPGTYS 62 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceec--------------CCCCeeEEEEEEEEEecC------ceEEEEeCCCcCC
Confidence 34599999999999999999977544332 247899999999998887 7899999999765
Q ss_pred cHH------HHHHhh--hhcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhCCCcc
Q psy12244 108 FSN------EVTRSL--AACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~------~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~~~~~ 154 (257)
+.. -...++ ..+|+++-|+||++ +|..+. ..+--.+.+++.+| +
T Consensus 63 L~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG---v 139 (653)
T COG0370 63 LTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG---V 139 (653)
T ss_pred CCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC---C
Confidence 321 122233 35799999999998 343211 11222456677666 5
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
|++++||++|.|++++++.+.+
T Consensus 140 PVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 140 PVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred CEEEEEeecCCCHHHHHHHHHH
Confidence 6999999999999999988864
No 237
>KOG0097|consensus
Probab=99.52 E-value=6.5e-14 Score=102.30 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=91.6
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
+....+.+-.|+|..|+|||.|+-++..+.-.. ...+.+.+..++..++. .+...++.+|||
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfma--------------dcphtigvefgtriiev----sgqkiklqiwdt 67 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--------------DCPHTIGVEFGTRIIEV----SGQKIKLQIWDT 67 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhh--------------cCCcccceecceeEEEe----cCcEEEEEEeec
Confidence 344567888999999999999999997643221 11223334444444444 456689999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCC
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
+|+++|...+.++++.+-++++|+|.+. .|+... .+...++.+++..-.
T Consensus 68 agqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q-rdv~yeeak~faeen 146 (215)
T KOG0097|consen 68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ-RDVTYEEAKEFAEEN 146 (215)
T ss_pred ccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc-ccCcHHHHHHHHhhc
Confidence 9999999999999999999999999987 343221 122233444443333
Q ss_pred ccceEEecccccccccccc
Q psy12244 153 KKSVLRIWHRRCFSCADCH 171 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~ 171 (257)
..-+++.||++|+|+++.|
T Consensus 147 gl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 147 GLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred CeEEEEecccccCcHHHHH
Confidence 4458999999999998754
No 238
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.51 E-value=4.7e-14 Score=110.48 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=53.8
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEee-cccCCccEEEEEeCCCCCcc----
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT-SILDGEEYLLNLIDTPGHVD---- 107 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~---- 107 (257)
++|++|+|||||+++|.+.... .....+.|.......+.+. + ..+.||||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~------~~~~i~DtpG~~~~~~~ 60 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK--------------VANYPFTTLEPNLGVVEVPDG------ARIQVADIPGLIEGASE 60 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc--------------ccCCCceeecCcceEEEcCCC------CeEEEEeccccchhhhc
Confidence 5899999999999999764211 1112334555555555554 4 6789999999843
Q ss_pred ---cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 ---FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 ---~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+...+...+..+|++++|+|+..
T Consensus 61 ~~~~~~~~~~~~~~~d~ii~v~d~~~ 86 (176)
T cd01881 61 GRGLGNQFLAHIRRADAILHVVDASE 86 (176)
T ss_pred CCCccHHHHHHHhccCEEEEEEeccC
Confidence 23344566788999999999874
No 239
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.51 E-value=4.5e-14 Score=112.95 Aligned_cols=131 Identities=19% Similarity=0.152 Sum_probs=78.7
Q ss_pred eeEEEEecCCCChHHHHH-HHHHhcCccccCCCcccccchHHHhhhCceEec-e-ee-EEE--e--ecccCCccEEEEEe
Q psy12244 29 RNFSIIAHVDHGKSTLAD-RLLEMTGTVLSSGSSQVLDSLQVEQERGITVKA-Q-TA-SLR--Y--TSILDGEEYLLNLI 100 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~-~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~-~~-~~~--~--~~~~~~~~~~~~li 100 (257)
.+|+++|..++|||||+. ++.... ... ..+..+ ...|+.. . +. ... . ....++....+.||
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~--~~~-------~~f~~~--~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iw 71 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKT--LTQ-------YQLLAT--HVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLW 71 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC--ccc-------ccCccc--cCCceecccceeEEeeeccccceeeCCEEEEEEEE
Confidence 579999999999999996 443211 000 001111 1122210 0 00 000 0 00114566899999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC--------------
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA-------------- 136 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~-------------- 136 (257)
||+|++++ ....+++.+|++|+|+|.++ +|+.+.
T Consensus 72 DTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~ 149 (195)
T cd01873 72 DTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLAR 149 (195)
T ss_pred eCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccc
Confidence 99999863 23457889999999999987 565421
Q ss_pred -----C--HHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 137 -----N--PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 137 -----~--~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
. ..+..+++.+.++ ++++++||++|.||+++|+.+.
T Consensus 150 ~~~~~~~V~~~e~~~~a~~~~---~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 150 PIKNADILPPETGRAVAKELG---IPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred ccccCCccCHHHHHHHHHHhC---CEEEEcCCCCCCCHHHHHHHHH
Confidence 0 1112223333333 4799999999999999988765
No 240
>KOG0093|consensus
Probab=99.50 E-value=7.6e-14 Score=102.62 Aligned_cols=128 Identities=14% Similarity=0.242 Sum_probs=93.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-+.++.|+|...+||||++-+.+... +...--+.+.++.....+ |. ..+..++++|||+|++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddS--------------Ft~afvsTvGidFKvKTv-yr---~~kRiklQiwDTagqE 81 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDS--------------FTSAFVSTVGIDFKVKTV-YR---SDKRIKLQIWDTAGQE 81 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccc--------------cccceeeeeeeeEEEeEe-ee---cccEEEEEEEecccch
Confidence 45689999999999999999885522 111112223333322222 22 2234789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.|...+-.++++|++.||++|.++ ||+..++ ..+-..++.+.+|+.
T Consensus 82 ryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-- 159 (193)
T KOG0093|consen 82 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-- 159 (193)
T ss_pred hhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH--
Confidence 999999999999999999999998 6765544 233344566667764
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+|+.|||.+.|+.++|+.+.
T Consensus 160 -fFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 160 -FFETSAKENINVKQVFERLV 179 (193)
T ss_pred -HhhhcccccccHHHHHHHHH
Confidence 89999999999999888765
No 241
>KOG0467|consensus
Probab=99.50 E-value=8.6e-14 Score=126.05 Aligned_cols=103 Identities=45% Similarity=0.710 Sum_probs=91.1
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
..+.+..+|+.++.|+++|||||...|+...+.+... +.-.++|..+.|+.+|+|++........++ +.++|
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~------~~~nl 76 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKD------YLINL 76 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCc------eEEEE
Confidence 4556789999999999999999999999988877665 556789999999999999987666644444 89999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
||+|||.||......+.+-+|+++++||+.+
T Consensus 77 idspghvdf~sevssas~l~d~alvlvdvve 107 (887)
T KOG0467|consen 77 IDSPGHVDFSSEVSSASRLSDGALVLVDVVE 107 (887)
T ss_pred ecCCCccchhhhhhhhhhhcCCcEEEEeecc
Confidence 9999999999999999999999999999998
No 242
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=3.3e-13 Score=103.40 Aligned_cols=139 Identities=20% Similarity=0.194 Sum_probs=96.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|++.|+.++||||++.++.+............ +..+. .+..|+...+....+.+ .+.++|+|||||+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~--~s~k~--kr~tTva~D~g~~~~~~-----~~~v~LfgtPGq~ 79 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS--VSGKG--KRPTTVAMDFGSIELDE-----DTGVHLFGTPGQE 79 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccc--ccccc--ccceeEeecccceEEcC-----cceEEEecCCCcH
Confidence 456899999999999999999987664333221100 01111 33355555555555433 2689999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCHHHHHHHHHHHhCC--CccceE
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANPEACEEQLQTLFNI--DKKSVL 157 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~~~~~~~~~~~~~~--~~~~~i 157 (257)
+|..++....+.++++|+++|++. .|+..+...+. +++.+.. ...|+|
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~---i~e~l~~~~~~~~vi 156 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEK---IREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHH---HHHHHHhccCCCcee
Confidence 999999999999999999999998 45544443222 2333322 256899
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
+++|..++++.+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999998877766643
No 243
>KOG0079|consensus
Probab=99.50 E-value=2e-14 Score=105.81 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=89.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+..|+|.+++|||+|+-++... .+....-..+.++.....+.. .+...++.||||+|++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~dd--------------tFs~sYitTiGvDfkirTv~i----~G~~VkLqIwDtAGqE 68 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADD--------------TFSGSYITTIGVDFKIRTVDI----NGDRVKLQIWDTAGQE 68 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhc--------------ccccceEEEeeeeEEEEEeec----CCcEEEEEEeecccHH
Confidence 3456789999999999999998542 122111222233333333333 4566899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
.|...+..+++..+++++|+|.+. .|.++... ...++.+.+...-.+.+|
T Consensus 69 rFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv-V~t~dAr~~A~~mgie~F 147 (198)
T KOG0079|consen 69 RFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRV-VDTEDARAFALQMGIELF 147 (198)
T ss_pred HHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcccee-eehHHHHHHHHhcCchhe
Confidence 999999999999999999999998 22222111 111223333222235689
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
++||+...|++..|.-|.++
T Consensus 148 ETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 148 ETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ehhhhhcccchHHHHHHHHH
Confidence 99999999999988777643
No 244
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.49 E-value=3.3e-14 Score=130.96 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=84.5
Q ss_pred ecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHHH---
Q psy12244 35 AHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNE--- 111 (257)
Q Consensus 35 G~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--- 111 (257)
|++|+|||||+|+|++... .....+|.|.+.....+.+++ ..+.+|||||+.++...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--------------~v~n~pG~Tv~~~~~~i~~~~------~~i~lvDtPG~~~~~~~s~~ 60 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--------------TVGNWPGVTVEKKEGKLGFQG------EDIEIVDLPGIYSLTTFSLE 60 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--------------eecCCCCeEEEEEEEEEEECC------eEEEEEECCCccccCccchH
Confidence 8999999999999965321 112356788887777777765 67899999999886432
Q ss_pred ---HHHhh--hhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhCCCccceEEecc
Q psy12244 112 ---VTRSL--AACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 112 ---~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
....+ ..+|++++|+|+++ +|+.+.. .....+++.+.++ .|++++||
T Consensus 61 e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg---~pvv~tSA 137 (591)
T TIGR00437 61 EEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLG---VPVVPTSA 137 (591)
T ss_pred HHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcC---CCEEEEEC
Confidence 22222 46899999999987 4542211 1222345555554 57999999
Q ss_pred cccccccccccccCC
Q psy12244 162 RRCFSCADCHRSLDS 176 (257)
Q Consensus 162 ~~g~gi~~l~~~i~~ 176 (257)
++|+|++++++.+.+
T Consensus 138 ~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 138 TEGRGIERLKDAIRK 152 (591)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998874
No 245
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.49 E-value=1.3e-13 Score=104.21 Aligned_cols=125 Identities=20% Similarity=0.225 Sum_probs=82.3
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHHHH
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEV 112 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 112 (257)
++|++|+|||||+++|+...... .....|. .......... ......+.+||+||+..+....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~---------------~~~~~t~-~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~ 62 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP---------------EEYETTI-IDFYSKTIEV--DGKKVKLQIWDTAGQERFRSLR 62 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC---------------cccccch-hheeeEEEEE--CCEEEEEEEEecCChHHHHhHH
Confidence 58999999999999997643310 0111122 2222233321 2234789999999999988888
Q ss_pred HHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEecc
Q psy12244 113 TRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 113 ~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
...++.+|++++|+|+.. +|+.....................+++++|+
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 142 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSA 142 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEec
Confidence 888899999999999998 4553332222111011222233467999999
Q ss_pred cccccccccccccC
Q psy12244 162 RRCFSCADCHRSLD 175 (257)
Q Consensus 162 ~~g~gi~~l~~~i~ 175 (257)
+++.|+++++++|.
T Consensus 143 ~~~~~i~~~~~~l~ 156 (157)
T cd00882 143 KTGENVEELFEELA 156 (157)
T ss_pred CCCCChHHHHHHHh
Confidence 99999999887764
No 246
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.49 E-value=9.4e-14 Score=106.12 Aligned_cols=125 Identities=21% Similarity=0.222 Sum_probs=80.3
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH---
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS--- 109 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~--- 109 (257)
++|++|+|||||+++|++...... ....+.|.........+. ....+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dt~g~~~~~~~~ 62 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV-------------SPVPGTTTDPVEYVWELG-----PLGPVVLIDTPGIDEAGGLG 62 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc-------------CCCCCcEECCeEEEEEec-----CCCcEEEEECCCCCccccch
Confidence 589999999999999976432211 112233433333333322 12689999999987754
Q ss_pred ----HHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHH-HHH-HHHHHhCCCccceE
Q psy12244 110 ----NEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEA-CEE-QLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ----~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~-~~~-~~~~~~~~~~~~~i 157 (257)
..+...++.+|++++|+|+.. +|+...+... ..+ ...........+++
T Consensus 63 ~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
T cd00880 63 REREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVI 142 (163)
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceE
Confidence 344457788999999999998 5654332111 111 11112234456899
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||+++.|++++++++.
T Consensus 143 ~~sa~~~~~v~~l~~~l~ 160 (163)
T cd00880 143 AVSALTGEGIDELREALI 160 (163)
T ss_pred EEeeeccCCHHHHHHHHH
Confidence 999999999999888765
No 247
>KOG0088|consensus
Probab=99.49 E-value=6.2e-15 Score=109.64 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=89.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|+++|...+|||||+-+++...-. + ++-.|+...+......- ++....+.||||+|++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn----------~------kHlsTlQASF~~kk~n~--ed~ra~L~IWDTAGQE 73 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFN----------C------KHLSTLQASFQNKKVNV--EDCRADLHIWDTAGQE 73 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcc----------h------hhHHHHHHHHhhccccc--ccceeeeeeeeccchH
Confidence 3578999999999999999998753211 1 11111111111111111 3345789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
+|-..-.-+++.+|+++||+|.++ +|+.+.+ ....++...+.....+.+
T Consensus 74 rfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR-~Vt~qeAe~YAesvGA~y 152 (218)
T KOG0088|consen 74 RFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER-QVTRQEAEAYAESVGALY 152 (218)
T ss_pred hhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh-hhhHHHHHHHHHhhchhh
Confidence 999888889999999999999998 6664432 222223333333334568
Q ss_pred EEecccccccccccccccCCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+++||+...||.++|+.|...
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAK 173 (218)
T ss_pred eecccccccCHHHHHHHHHHH
Confidence 999999999999999888643
No 248
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.47 E-value=3.2e-13 Score=110.98 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=58.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
+|+++|.+|+|||||+++|.+..... ....+.|.+.....+.+.+ ..+++|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--------------~~~~~tT~~~~~g~~~~~~------~~i~l~DtpG~~~~~ 61 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV--------------AAYEFTTLTCVPGVLEYKG------AKIQLLDLPGIIEGA 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc--------------cCCCCccccceEEEEEECC------eEEEEEECCCccccc
Confidence 58999999999999999997532211 1122345455555566655 7899999999854
Q ss_pred -----cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 -----FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 -----~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+.......++.+|++++|+|+++
T Consensus 62 ~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 62 ADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred ccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 23455677899999999999865
No 249
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.47 E-value=1.2e-13 Score=109.90 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=81.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|+.|+|||||+++|.... ... +.. .|.... ...+.+ ++....+.+|||||+..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~~------------~~~--~t~~~~~~~~~~~----~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FPE------------EYH--PTVFENYVTDCRV----DGKPVQLALWDTAGQEE 61 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc------------ccC--CcccceEEEEEEE----CCEEEEEEEEECCCChh
Confidence 479999999999999999996321 100 001 111111 112222 33446789999999988
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH------------HHHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP------------EACEEQL 145 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~------------~~~~~~~ 145 (257)
|.......++.+|++++|+|.+. +|+..... ......+
T Consensus 62 ~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 62 YERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred ccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHH
Confidence 76555556788999999999987 55532110 0112222
Q ss_pred HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.++ ..++|++||++|.|++++++.+.+
T Consensus 142 ~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~ 170 (187)
T cd04129 142 AKEIG--AKKYMECSALTGEGVDDVFEAATR 170 (187)
T ss_pred HHHhC--CcEEEEccCCCCCCHHHHHHHHHH
Confidence 33323 246999999999999999998874
No 250
>KOG1191|consensus
Probab=99.44 E-value=1.3e-13 Score=119.94 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=70.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
....|+|+|+||+|||||+|+|......+..+ ..|.|.|.-.+.+..++ +.+.|+||+|..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-------------v~GTTRDaiea~v~~~G------~~v~L~DTAGiR 327 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-------------VPGTTRDAIEAQVTVNG------VPVRLSDTAGIR 327 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-------------CCCcchhhheeEeecCC------eEEEEEeccccc
Confidence 34789999999999999999999887777665 78999999888898888 899999999986
Q ss_pred c---------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 107 D---------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~---------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
. -.......+..||++++|+|+..
T Consensus 328 e~~~~~iE~~gI~rA~k~~~~advi~~vvda~~ 360 (531)
T KOG1191|consen 328 EESNDGIEALGIERARKRIERADVILLVVDAEE 360 (531)
T ss_pred cccCChhHHHhHHHHHHHHhhcCEEEEEecccc
Confidence 5 12223446778999999999955
No 251
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.43 E-value=8.3e-13 Score=96.71 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=56.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
+|+++|.+|+|||||+|+|++....... ...+.|.......+.+.. ..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-------------~~~~~T~~~~~~~~~~~~------~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS-------------NIPGTTRDPVYGQFEYNN------KKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES-------------SSTTSSSSEEEEEEEETT------EEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc-------------ccccceeeeeeeeeeece------eeEEEEeCCCCcccc
Confidence 4899999999999999999863322211 123344444344445544 6778999999854
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
........+..+|++++|+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 62 SQDNDGKEIRKFLEQISKSDLIIYVVDASN 91 (116)
T ss_dssp HHHHHHHHHHHHHHHHCTESEEEEEEETTS
T ss_pred hhhHHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 22234555678999999999774
No 252
>KOG1143|consensus
Probab=99.42 E-value=2.7e-14 Score=120.23 Aligned_cols=184 Identities=16% Similarity=0.192 Sum_probs=120.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeec---------------cc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTS---------------IL 90 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---------------~~ 90 (257)
..+++++|..++|||||++.|.+ +.+++. .....+.++.+|.+.|.|.......+.|+. ++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQ--geLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQ--GELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEEecCcccCcceeeeeeec--ccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 35799999999999999999954 555544 444556677888888877654444333322 12
Q ss_pred CCccEEEEEeCCCCCcccHHHHHHhhhh--cceEEEEEecCc--------------------------cCCCCCC-HHHH
Q psy12244 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAA--CQGVVLLIDANQ--------------------------VDLKNAN-PEAC 141 (257)
Q Consensus 91 ~~~~~~~~liDtpG~~~~~~~~~~~~~~--aD~~ilVvd~~~--------------------------~D~~~~~-~~~~ 141 (257)
+.....++|||.+||.+|.+.++.++.. .|++++|+.|+. +|+.... .++.
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~t 324 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKT 324 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHH
Confidence 3446789999999999999999988864 799999999987 6775432 3444
Q ss_pred HHHHHHHh--------------------------CCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCC
Q psy12244 142 EEQLQTLF--------------------------NIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYED 195 (257)
Q Consensus 142 ~~~~~~~~--------------------------~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 195 (257)
.+++...+ .-+..|+|.+|+.+|+|++.|..+|.-++..-.-.........+..
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~q~~~e 404 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLVQLPAE 404 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHHHhcCcce
Confidence 44444333 1223489999999999999988887744321110001111222234
Q ss_pred cchhhhcceeeEeeeccc
Q psy12244 196 IPIARIRNFSIIAHVDHG 213 (257)
Q Consensus 196 ~~~~~~~~~~~~G~v~~G 213 (257)
+.+++..++.=+|.|.-|
T Consensus 405 FqvdEiy~Vp~VG~VVGG 422 (591)
T KOG1143|consen 405 FQVDEIYNVPHVGQVVGG 422 (591)
T ss_pred eeHhHeecCCcccccccc
Confidence 556666666555555545
No 253
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.40 E-value=4.9e-13 Score=111.03 Aligned_cols=85 Identities=19% Similarity=0.300 Sum_probs=65.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+.--.|+++|.+++|||||+++|++........ .-.|..+....+.|++ .+++++|+||.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y--------------~FTTl~~VPG~l~Y~g------a~IQild~Pgi 120 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADY--------------PFTTLEPVPGMLEYKG------AQIQLLDLPGI 120 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCcccccc--------------CceecccccceEeecC------ceEEEEcCccc
Confidence 345679999999999999999997755544322 1235566677788888 89999999997
Q ss_pred cc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.. .-++.+..++.||++++|+|+..
T Consensus 121 i~gas~g~grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 121 IEGASSGRGRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred ccCcccCCCCcceeeeeeccCCEEEEEEecCC
Confidence 44 22456778899999999999996
No 254
>KOG0468|consensus
Probab=99.40 E-value=1.8e-12 Score=116.14 Aligned_cols=104 Identities=42% Similarity=0.708 Sum_probs=88.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC---CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS---GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~---~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
.+.+||+++||-.+|||+|+..|..++..-... ..-.+.|.+..|++||.++......+...+. .++.+.++++||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~-~~KS~l~nilDT 204 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS-KGKSYLMNILDT 204 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC-cCceeeeeeecC
Confidence 578999999999999999999998766532211 2235678899999999999988887766653 667789999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||.+|..++..+++.+|++++|+|+.+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~E 232 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAE 232 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEccc
Confidence 9999999999999999999999999998
No 255
>KOG1489|consensus
Probab=99.39 E-value=1.7e-12 Score=107.44 Aligned_cols=126 Identities=18% Similarity=0.330 Sum_probs=90.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+..|++||-||+|||||+++|......+... .-.|+.+....+.|.+. .++++-|.||...
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~Y--------------aFTTL~P~iG~v~yddf-----~q~tVADiPGiI~ 256 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHY--------------AFTTLRPHIGTVNYDDF-----SQITVADIPGIIE 256 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCccccc--------------ceeeeccccceeecccc-----ceeEeccCccccc
Confidence 3468899999999999999997755544332 12456666666767652 3499999999754
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHH
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQL 145 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~ 145 (257)
+-...+..+..++..++|+|.+. +|++++ .+..++++
T Consensus 257 GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-e~~~l~~L 335 (366)
T KOG1489|consen 257 GAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-EKNLLSSL 335 (366)
T ss_pred cccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-HHHHHHHH
Confidence 34456778888999999999997 555422 22234566
Q ss_pred HHHhCCCccceEEecccccccccccccccC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++.+..+ .+||+||++|+|+++|++.|.
T Consensus 336 ~~~lq~~--~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 336 AKRLQNP--HVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred HHHcCCC--cEEEeeeccccchHHHHHHHh
Confidence 6655432 489999999999999887765
No 256
>KOG0083|consensus
Probab=99.37 E-value=1.9e-13 Score=98.99 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=84.1
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHHHH
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEV 112 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 112 (257)
++|.+++|||.|+-++ +.++.-.. ..-.|+.+.+...-..- ++...++++|||+|+++|...+
T Consensus 2 llgds~~gktcllir~--kdgafl~~-------------~fistvgid~rnkli~~--~~~kvklqiwdtagqerfrsvt 64 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRF--KDGAFLAG-------------NFISTVGIDFRNKLIDM--DDKKVKLQIWDTAGQERFRSVT 64 (192)
T ss_pred ccccCccCceEEEEEe--ccCceecC-------------ceeeeeeeccccceecc--CCcEEEEEEeeccchHHHhhhh
Confidence 6899999999998776 33332111 00112222222222222 5667899999999999999999
Q ss_pred HHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceEEec
Q psy12244 113 TRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 113 ~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i~iS 160 (257)
-.+++.+|+.++++|..+ +|+..++ ..+--+.+.+.++ +|+.++|
T Consensus 65 ~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~---ipfmets 141 (192)
T KOG0083|consen 65 HAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG---IPFMETS 141 (192)
T ss_pred HhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHC---CCceecc
Confidence 999999999999999887 5653322 2222344555555 4699999
Q ss_pred ccccccccccccccC
Q psy12244 161 HRRCFSCADCHRSLD 175 (257)
Q Consensus 161 a~~g~gi~~l~~~i~ 175 (257)
|++|-|++..|-.|.
T Consensus 142 aktg~nvd~af~~ia 156 (192)
T KOG0083|consen 142 AKTGFNVDLAFLAIA 156 (192)
T ss_pred ccccccHhHHHHHHH
Confidence 999999997776655
No 257
>KOG0070|consensus
Probab=99.37 E-value=8.4e-13 Score=101.29 Aligned_cols=86 Identities=14% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
.+...+..+|+++|--++||||++.+| +.+.+. ..-.|+..+...+.|+. ..+++||
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykL--k~~E~v---------------ttvPTiGfnVE~v~ykn------~~f~vWD 67 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKL--KLGEIV---------------TTVPTIGFNVETVEYKN------ISFTVWD 67 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEee--ccCCcc---------------cCCCccccceeEEEEcc------eEEEEEe
Confidence 344567778999999999999999988 333321 22457777888888877 8999999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..|+.+++..+..+++..+++|+|||+++
T Consensus 68 vGGq~k~R~lW~~Y~~~t~~lIfVvDS~D 96 (181)
T KOG0070|consen 68 VGGQEKLRPLWKHYFQNTQGLIFVVDSSD 96 (181)
T ss_pred cCCCcccccchhhhccCCcEEEEEEeCCc
Confidence 99999999999999999999999999997
No 258
>COG2262 HflX GTPases [General function prediction only]
Probab=99.36 E-value=2.4e-12 Score=110.33 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=85.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
...+.|+++|.+|+|||||+|+|++......+ +---|.++.+..+.+.+ ...+.+-||-|+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--------------~LFATLdpttR~~~l~~-----g~~vlLtDTVGF 250 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD--------------QLFATLDPTTRRIELGD-----GRKVLLTDTVGF 250 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccc--------------cccccccCceeEEEeCC-----CceEEEecCccC
Confidence 45678999999999999999999753322111 11235666666666652 268999999998
Q ss_pred cc--------cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHH
Q psy12244 106 VD--------FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQT 147 (257)
Q Consensus 106 ~~--------~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~ 147 (257)
.+ -.+.++.....||+++.|||+++ +|+... ......+..
T Consensus 251 I~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~--~~~~~~~~~ 328 (411)
T COG2262 251 IRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED--EEILAELER 328 (411)
T ss_pred cccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc--hhhhhhhhh
Confidence 65 12334445577999999999998 343221 111222222
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. . + +.+++||++|.|++.|++.|..
T Consensus 329 ~--~-~-~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 329 G--S-P-NPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred c--C-C-CeEEEEeccCcCHHHHHHHHHH
Confidence 1 1 1 4799999999999999988763
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.35 E-value=5e-12 Score=101.25 Aligned_cols=102 Identities=25% Similarity=0.335 Sum_probs=69.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|++|+|||||+|+|++........ ...+.|.........+.+ ..+++|||||..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~------------~~~~~T~~~~~~~~~~~~------~~i~viDTPG~~d~ 62 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL------------SASSVTKTCQKESAVWDG------RRVNVIDTPGLFDT 62 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc------------CCCCcccccceeeEEECC------eEEEEEECcCCCCc
Confidence 479999999999999999998754332110 123556666666666655 78999999998764
Q ss_pred H-------HHHHH----hhhhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCC
Q psy12244 109 S-------NEVTR----SLAACQGVVLLIDANQVDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 109 ~-------~~~~~----~~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~ 151 (257)
. ..+.. ....+|++|+|+++.. . ........+.+++.+|-
T Consensus 63 ~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~--~-t~~d~~~l~~l~~~fg~ 113 (196)
T cd01852 63 SVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR--F-TEEEEQAVETLQELFGE 113 (196)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC--c-CHHHHHHHHHHHHHhCh
Confidence 1 12222 2356799999998875 2 22345667777777763
No 260
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.34 E-value=6e-12 Score=97.34 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=74.1
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc--
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF-- 108 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-- 108 (257)
|+++|++|+|||||++.|++...... .+...+.|... ..+... ..+.+|||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~------------~~~~~~~t~~~--~~~~~~-------~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR------------TSKTPGKTQLI--NFFNVN-------DKFRLVDLPGYGYAKV 60 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee------------ecCCCCcceeE--EEEEcc-------CeEEEecCCCcccccc
Confidence 79999999999999999974221110 01112222221 111111 27889999997542
Q ss_pred --------HHHHHHhh---hhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHHhC
Q psy12244 109 --------SNEVTRSL---AACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTLFN 150 (257)
Q Consensus 109 --------~~~~~~~~---~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~~~ 150 (257)
...+..++ ...+++++|+|... +|+.... .......+...+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~ 140 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELK 140 (170)
T ss_pred CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHH
Confidence 22222333 34678889998875 5543211 2223333333332
Q ss_pred --CCccceEEecccccccccccccccC
Q psy12244 151 --IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 --~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....+++++||+++.|+.++++.|.
T Consensus 141 ~~~~~~~~~~~Sa~~~~~~~~l~~~l~ 167 (170)
T cd01876 141 LFEIDPPIILFSSLKGQGIDELRALIE 167 (170)
T ss_pred hccCCCceEEEecCCCCCHHHHHHHHH
Confidence 3445799999999999999988775
No 261
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.32 E-value=3.1e-12 Score=123.03 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccC------------CccEEEEEeCCCCCcc
Q psy12244 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILD------------GEEYLLNLIDTPGHVD 107 (257)
Q Consensus 40 GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~------------~~~~~~~liDtpG~~~ 107 (257)
+||||+.+|.+... ......|+|+..+.+.+.+...-. -....++|||||||+.
T Consensus 473 ~KTtLLD~iR~t~v--------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~ 538 (1049)
T PRK14845 473 HNTTLLDKIRKTRV--------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA 538 (1049)
T ss_pred ccccHHHHHhCCCc--------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH
Confidence 39999999965432 223467899998888877653100 0011389999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------cCCC-CCC--------------HHHHHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLK-NAN--------------PEACEEQLQ 146 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~-~~~--------------~~~~~~~~~ 146 (257)
|......++..+|++++|+|+++ +|+. .++ .+...+++.
T Consensus 539 F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~ 618 (1049)
T PRK14845 539 FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELE 618 (1049)
T ss_pred HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHH
Confidence 99888888999999999999985 7774 222 122222221
Q ss_pred ----H------HhCC------------CccceEEecccccccccccccccCCCcccCCCC-CCCCCCCCCCCcchh----
Q psy12244 147 ----T------LFNI------------DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLA-KPDSKATPYEDIPIA---- 199 (257)
Q Consensus 147 ----~------~~~~------------~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~---- 199 (257)
+ ..|+ ...+++|+||++|+|+++|+++|..++. ..+. ........+....+.
T Consensus 619 ~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~-~~l~~~L~~~~~~~~~g~VlEv~~ 697 (1049)
T PRK14845 619 IKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ-KYLEERLKLNVEGYAKGTILEVKE 697 (1049)
T ss_pred HHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH-HhhhhhhccCCCCceEEEEEEEEE
Confidence 0 0121 2357999999999999999987763321 0010 001111112223332
Q ss_pred -hhcceeeEeeecccchhhHHHHHHh
Q psy12244 200 -RIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 200 -~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
...+.++.|.+.+|....++.++..
T Consensus 698 ~kG~G~vvt~iv~~G~Lk~GD~iv~g 723 (1049)
T PRK14845 698 EKGLGTTIDAIIYDGTLRRGDTIVVG 723 (1049)
T ss_pred ecCceeEEEEEEEcCEEecCCEEEEc
Confidence 2355667777788877777776553
No 262
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=8.1e-12 Score=104.16 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=59.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+|+|+||||||||++++......+... +-.|-..+.+.+.+.+ ..+++|||||.-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y--------------PFTTK~i~vGhfe~~~------~R~QvIDTPGlL 226 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY--------------PFTTKGIHVGHFERGY------LRIQVIDTPGLL 226 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCC--------------CccccceeEeeeecCC------ceEEEecCCccc
Confidence 57899999999999999999996644433221 1134455566666665 689999999975
Q ss_pred c--------cHHHHHHhhh-hcceEEEEEecCc
Q psy12244 107 D--------FSNEVTRSLA-ACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~--------~~~~~~~~~~-~aD~~ilVvd~~~ 130 (257)
| ...+...+++ ..++++|++|++.
T Consensus 227 DRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se 259 (346)
T COG1084 227 DRPLEERNEIERQAILALRHLAGVILFLFDPSE 259 (346)
T ss_pred CCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc
Confidence 5 2333444554 4688999999997
No 263
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.29 E-value=1.3e-11 Score=99.33 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=58.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|++++|||||+++|....... ...++......+.... .+....+.+||||||.++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-----------------t~~s~~~~~~~~~~~~--~~~~~~~~l~D~pG~~~~ 61 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-----------------TVTSIEPNVATFILNS--EGKGKKFRLVDVPGHPKL 61 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-----------------ccCcEeecceEEEeec--CCCCceEEEEECCCCHHH
Confidence 469999999999999999996532110 0011111222222211 123467999999999999
Q ss_pred HHHHHHhhhhc-ceEEEEEecCc
Q psy12244 109 SNEVTRSLAAC-QGVVLLIDANQ 130 (257)
Q Consensus 109 ~~~~~~~~~~a-D~~ilVvd~~~ 130 (257)
...+...++.+ +++|+|+|+..
T Consensus 62 ~~~~~~~~~~~~~~vV~VvD~~~ 84 (203)
T cd04105 62 RDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred HHHHHHHHhccCCEEEEEEECcc
Confidence 98888889998 99999999985
No 264
>KOG0469|consensus
Probab=99.29 E-value=6.7e-12 Score=109.48 Aligned_cols=106 Identities=47% Similarity=0.757 Sum_probs=90.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeec----------ccCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTS----------ILDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~----------~~~~ 92 (257)
..+++|+.++.|+++|||||...|+.+.+.+... ..+.++|..+.|+++++|+......+.+.- .-++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 4578999999999999999999999988877644 678889999999999999986555443321 1145
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.+++||.|||.+|..+.-.+++..|++++|||+.+
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~ 133 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC
Confidence 67899999999999999999999999999999999988
No 265
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.27 E-value=2.8e-11 Score=98.37 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=60.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..|+|||||+++|.+..-. .+...++... +....... ......+.+|||+|+++|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~--------------~~~~~t~~~~--~~~~~~~~--~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP--------------EGYPPTIGNL--DPAKTIEP--YRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc--------------ccCCCceeee--eEEEEEEe--CCCEEEEEeecCCCHHHH
Confidence 78999999999999999999653221 1112222222 11111111 122467999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
...+..+...++++++|+|...
T Consensus 68 ~~~~~~y~~~~~~~l~~~d~~~ 89 (219)
T COG1100 68 RSLRPEYYRGANGILIVYDSTL 89 (219)
T ss_pred HHHHHHHhcCCCEEEEEEeccc
Confidence 9999999999999999999886
No 266
>KOG1144|consensus
Probab=99.27 E-value=5.5e-13 Score=120.55 Aligned_cols=90 Identities=29% Similarity=0.381 Sum_probs=64.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc------------CCcc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL------------DGEE 94 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~------------~~~~ 94 (257)
+.+.++|+||+++|||-|+..+.+.+.. .....|+|..++.+.+....+. .-.-
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVq--------------egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kv 539 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQ--------------EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKV 539 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccc--------------cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCC
Confidence 4567999999999999999999553221 1223455555544444322110 0011
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
-.+.+||||||+.|.....++.+.||++|+|+|...
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMH 575 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhc
Confidence 358899999999999999999999999999999988
No 267
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.27 E-value=8.4e-12 Score=89.57 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=81.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC--
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH-- 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~-- 105 (257)
+++++++|.+++|||||++.|.+.... -..+..++|+. . ..|||||-
T Consensus 1 MKri~~vG~~gcGKTtL~q~L~G~~~l-----------------------ykKTQAve~~d------~--~~IDTPGEy~ 49 (148)
T COG4917 1 MKRIAFVGQVGCGKTTLFQSLYGNDTL-----------------------YKKTQAVEFND------K--GDIDTPGEYF 49 (148)
T ss_pred CceeEEecccccCchhHHHHhhcchhh-----------------------hcccceeeccC------c--cccCCchhhh
Confidence 357999999999999999999442111 11122345543 1 26999994
Q ss_pred --cccHHHHHHhhhhcceEEEEEecCc-----------------------cCCC-CCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 106 --VDFSNEVTRSLAACQGVVLLIDANQ-----------------------VDLK-NANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 106 --~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------~D~~-~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
..+..........+|++++|-.+++ +|+. +++.....+.+.+. | ..++|.+
T Consensus 50 ~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea-G--a~~IF~~ 126 (148)
T COG4917 50 EHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREA-G--AEPIFET 126 (148)
T ss_pred hhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEecccccchHhHHHHHHHHHHc-C--CcceEEE
Confidence 3344445556688999999998887 7776 44555555555552 4 4579999
Q ss_pred cccccccccccccccCC
Q psy12244 160 WHRRCFSCADCHRSLDS 176 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~ 176 (257)
|+.+..|+++|+++|..
T Consensus 127 s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 127 SAVDNQGVEELVDYLAS 143 (148)
T ss_pred eccCcccHHHHHHHHHh
Confidence 99999999999998873
No 268
>KOG0075|consensus
Probab=99.26 E-value=9.2e-12 Score=91.74 Aligned_cols=124 Identities=18% Similarity=0.181 Sum_probs=84.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
...+.++|-.++|||||+|.+.. |.. .+.-+.|.......+. .....+.+||.||+..
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~--g~~--------------~edmiptvGfnmrk~t------kgnvtiklwD~gGq~r 77 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIAR--GQY--------------LEDMIPTVGFNMRKVT------KGNVTIKLWDLGGQPR 77 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEee--ccc--------------hhhhcccccceeEEec------cCceEEEEEecCCCcc
Confidence 45689999999999999998632 110 1122334333322222 2336788999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCc---
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDK--- 153 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~--- 153 (257)
|..++..+.+..++++++|||.+ +|++++-- ..++-..+|+..
T Consensus 78 frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~---~~~li~rmgL~sitd 154 (186)
T KOG0075|consen 78 FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS---KIALIERMGLSSITD 154 (186)
T ss_pred HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc---HHHHHHHhCcccccc
Confidence 99999999999999999999998 44443310 112222233322
Q ss_pred --cceEEecccccccccccccccCC
Q psy12244 154 --KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 --~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.-.|.||++...|++.+.++|.+
T Consensus 155 REvcC~siScke~~Nid~~~~Wli~ 179 (186)
T KOG0075|consen 155 REVCCFSISCKEKVNIDITLDWLIE 179 (186)
T ss_pred ceEEEEEEEEcCCccHHHHHHHHHH
Confidence 23689999999999988887763
No 269
>PLN00023 GTP-binding protein; Provisional
Probab=99.26 E-value=3.7e-11 Score=101.75 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=66.2
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc---------cCC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI---------LDG 92 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~---------~~~ 92 (257)
..+.....+|+++|..++|||||+++|+...- .....+.+..+.....+.+... -++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F--------------~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~ 80 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS--------------IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCc--------------ccccCCceeeeEEEEEEEECCcccccccccccCC
Confidence 44555667899999999999999999965211 1111222222222233343210 013
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.+.||||+|++.|...+..+++.+|++|+|+|.++
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITd 118 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ 118 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCC
Confidence 45789999999999999999999999999999999885
No 270
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=6.1e-12 Score=102.58 Aligned_cols=130 Identities=26% Similarity=0.279 Sum_probs=83.6
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtp 103 (257)
...+.||.++|.+|+|||||+|+|++....... +-|.+.+.... ...+.+ ..++|||||
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--------------~vg~~t~~~~~~~~~~~~------~~l~lwDtP 95 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--------------KVGVGTDITTRLRLSYDG------ENLVLWDTP 95 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee--------------ecccCCCchhhHHhhccc------cceEEecCC
Confidence 456778999999999999999999753332211 01111111111 112222 679999999
Q ss_pred CCcc-------cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCC----C-------
Q psy12244 104 GHVD-------FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNA----N------- 137 (257)
Q Consensus 104 G~~~-------~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~----~------- 137 (257)
|.++ +.......+...|++++++++.+ +|+... +
T Consensus 96 G~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~ 175 (296)
T COG3596 96 GLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPS 175 (296)
T ss_pred CcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCC
Confidence 9987 77778889999999999999998 333110 0
Q ss_pred --H----HHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 138 --P----EACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 138 --~----~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
. ++-.+.+.+++. +.-|++.+|+..+.|++.+...+.
T Consensus 176 ~a~~qfi~~k~~~~~~~~q-~V~pV~~~~~r~~wgl~~l~~ali 218 (296)
T COG3596 176 PAIKQFIEEKAEALGRLFQ-EVKPVVAVSGRLPWGLKELVRALI 218 (296)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcCCeEEeccccCccHHHHHHHHH
Confidence 1 111222333322 234788899999999999887765
No 271
>KOG0076|consensus
Probab=99.25 E-value=1.1e-11 Score=93.96 Aligned_cols=137 Identities=14% Similarity=0.105 Sum_probs=90.0
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
...-..|+|+|.-|+||||++.++-...... ...... .+-..|...+...++... ..+.|||..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~--------~~~l~~-~ki~~tvgLnig~i~v~~------~~l~fwdlgG 78 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKA--------YGGLNP-SKITPTVGLNIGTIEVCN------APLSFWDLGG 78 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhh--------hcCCCH-HHeecccceeecceeecc------ceeEEEEcCC
Confidence 3455679999999999999999873211100 000000 122234444555555544 6899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHH--HHHHHHHHh------C
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEA--CEEQLQTLF------N 150 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~--~~~~~~~~~------~ 150 (257)
++.....+..++..++++++|||+.+ +-..+.+.+. ...++...+ +
T Consensus 79 Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~ 158 (197)
T KOG0076|consen 79 QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIP 158 (197)
T ss_pred hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcC
Confidence 99999999999999999999999998 1111111111 112232222 3
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
-...++.||||.+|+||++-.+++.+
T Consensus 159 ~rd~~~~pvSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 159 RRDNPFQPVSALTGEGVKEGIEWLVK 184 (197)
T ss_pred CccCccccchhhhcccHHHHHHHHHH
Confidence 34567999999999999988777763
No 272
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.25 E-value=3.5e-11 Score=96.62 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=61.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec-ccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS-ILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|..++|||||+++|+...- ..+..+.+..+.....+.+.. ..++..+.+.||||+|+++|
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f--------------~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~ 67 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV--------------LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH
Confidence 689999999999999999975221 111112222222222333321 01245578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.......++.+|++|+|+|.++
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcC
Confidence 9888889999999999999886
No 273
>PRK09866 hypothetical protein; Provisional
Probab=99.23 E-value=5.6e-11 Score=107.74 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=59.4
Q ss_pred cEEEEEeCCCCCcc-----cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCC---C
Q psy12244 94 EYLLNLIDTPGHVD-----FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNA---N 137 (257)
Q Consensus 94 ~~~~~liDtpG~~~-----~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~---~ 137 (257)
..++.|+||||... +...+...+..+|++++|+|+.. +|+.+. +
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 35789999999854 34456678999999999999986 555321 1
Q ss_pred HHHHHHHHHHHh---CCCccceEEecccccccccccccccCC
Q psy12244 138 PEACEEQLQTLF---NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 ~~~~~~~~~~~~---~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.+.+.+...+ ..+...+|||||++|.|++.|++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 334444443332 334456999999999999999988874
No 274
>KOG0395|consensus
Probab=99.22 E-value=2.7e-11 Score=96.65 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=89.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+.++|+++|.+|+|||+|+.+++...- ..+..+.+. +.....+.. ++....+.|+||+|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f--------------~~~y~ptie-d~y~k~~~v----~~~~~~l~ilDt~g~~ 62 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRF--------------VEDYDPTIE-DSYRKELTV----DGEVCMLEILDTAGQE 62 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccc--------------ccccCCCcc-ccceEEEEE----CCEEEEEEEEcCCCcc
Confidence 357899999999999999999865221 111122111 111222222 4566889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+|..+...+++.+|+.++|++.++ +|+.... ..+..+.+...+ .
T Consensus 63 ~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~---~ 139 (196)
T KOG0395|consen 63 EFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSW---G 139 (196)
T ss_pred cChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhc---C
Confidence 999999999999999999999998 5554321 112222333322 3
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||+...|++++|..|..
T Consensus 140 ~~f~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 140 CAFIETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred CcEEEeeccCCcCHHHHHHHHHH
Confidence 56999999999999999888764
No 275
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.20 E-value=1.7e-10 Score=94.29 Aligned_cols=115 Identities=18% Similarity=0.233 Sum_probs=74.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+..|+++|++|+|||||++.|+...... ......|. + .... ....+++++||||+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~------------~~~~~~g~-i----~i~~------~~~~~i~~vDtPg~ 93 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ------------NISDIKGP-I----TVVT------GKKRRLTFIECPND 93 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC------------cccccccc-E----EEEe------cCCceEEEEeCCch
Confidence 446779999999999999999997642210 00011121 0 0011 12368899999986
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC--CHHHHHHHHHHHhC---CCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA--NPEACEEQLQTLFN---IDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~--~~~~~~~~~~~~~~---~~~ 153 (257)
. ..+...+..+|++++|+|+.. +|+... ..+...+++++.+. ...
T Consensus 94 ~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~ 170 (225)
T cd01882 94 I---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQG 170 (225)
T ss_pred H---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence 4 455667889999999999975 566422 23444555555332 345
Q ss_pred cceEEeccccccc
Q psy12244 154 KSVLRIWHRRCFS 166 (257)
Q Consensus 154 ~~~i~iSa~~g~g 166 (257)
.+++++||++.-.
T Consensus 171 ~ki~~iSa~~~~~ 183 (225)
T cd01882 171 AKLFYLSGIVHGR 183 (225)
T ss_pred CcEEEEeeccCCC
Confidence 6899999988743
No 276
>KOG0081|consensus
Probab=99.20 E-value=6.5e-12 Score=93.72 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=85.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc-----CCccEEEEEeCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL-----DGEEYLLNLIDT 102 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~-----~~~~~~~~liDt 102 (257)
..+...+|.+|+|||+++-++.. +..... --..+.++.....+.|+..- .+....+.+|||
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD--~~F~~q------------FIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDT 74 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTD--GKFNTQ------------FISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDT 74 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecC--Ccccce------------eEEEeecccccceEEEeccCCCCCCcceEEEEeeecc
Confidence 34567899999999999987642 111000 01112233333344443310 123468999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHh
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLF 149 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~ 149 (257)
+|+++|...+-..++.|-+.++++|.+. .|+.+.+ -++...++.+.+
T Consensus 75 AGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky 154 (219)
T KOG0081|consen 75 AGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY 154 (219)
T ss_pred ccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999998 4443221 122223444444
Q ss_pred CCCccceEEecccccccccccccccC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+ .|+|++||-+|.||++..+.+.
T Consensus 155 g---lPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 155 G---LPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred C---CCeeeeccccCcCHHHHHHHHH
Confidence 5 5699999999999987665554
No 277
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.16 E-value=7.1e-11 Score=86.58 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=55.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+|+|..|+|||||+++|++..... ........+.+........ ......+.+||++|+..+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~g~~~~~ 64 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPD----------NSVPEETSEITIGVDVIVV------DGDRQSLQFWDFGGQEEFY 64 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS------------------SSTTSCEEEEEEEE------TTEEEEEEEEEESSSHCHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcc----------cccccccCCCcEEEEEEEe------cCCceEEEEEecCccceec
Confidence 58999999999999999998744320 0000011112222111122 2233568999999998877
Q ss_pred HHHHHhhhhcceEEEEEecCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~ 130 (257)
......+..+|++|+|+|+++
T Consensus 65 ~~~~~~~~~~d~~ilv~D~s~ 85 (119)
T PF08477_consen 65 SQHQFFLKKADAVILVYDLSD 85 (119)
T ss_dssp CTSHHHHHHSCEEEEEEECCG
T ss_pred ccccchhhcCcEEEEEEcCCC
Confidence 765666899999999999884
No 278
>KOG0071|consensus
Probab=99.16 E-value=1.4e-10 Score=84.94 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=66.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+.+|-.++||||++-.|...... ..-.|..++...+.|+. ..|++||..|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-----------------~~ipTvGFnvetVtykN------~kfNvwdvGGq 71 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-----------------TTIPTVGFNVETVTYKN------VKFNVWDVGGQ 71 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-----------------ccccccceeEEEEEeee------eEEeeeeccCc
Confidence 45677999999999999999998542221 11235555566677776 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.++.|..++....++|||+|+.+
T Consensus 72 d~iRplWrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 72 DKIRPLWRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred hhhhHHHHhhccCCceEEEEEeccc
Confidence 9999999999999999999999986
No 279
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.13 E-value=8.4e-10 Score=91.34 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=61.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|.+|+|||||+|+|++........ ....|.........+.+ ..+++|||||.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-------------~~~~T~~~~~~~~~~~g------~~i~vIDTPGl 89 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSA-------------FQSETLRVREVSGTVDG------FKLNIIDTPGL 89 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-------------CCCceEEEEEEEEEECC------eEEEEEECCCc
Confidence 356789999999999999999998754322111 11234433333333333 68999999998
Q ss_pred cccHH------H----HHHhhh--hcceEEEEEecCccCCCCCCHHHHHHHHHHHhCC
Q psy12244 106 VDFSN------E----VTRSLA--ACQGVVLLIDANQVDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~------~----~~~~~~--~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~ 151 (257)
.+... . +..++. ..|++++|...+.... ........+.+++.++.
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~-~~~d~~llk~I~e~fG~ 146 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR-DYLDLPLLRAITDSFGP 146 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC-CHHHHHHHHHHHHHhCh
Confidence 86521 1 112222 4677777754332111 11223566677776653
No 280
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.12 E-value=1.7e-10 Score=92.50 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=72.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+|+|++..... .. ..... ....|... ..+.. .....+.+|||||+.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~-~~--~~~~~------~~~~t~~~----~~~~~---~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE-EG--AAPTG------VVETTMKR----TPYPH---PKFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC-CC--ccccC------ccccccCc----eeeec---CCCCCceEEeCCCCCcc
Confidence 579999999999999999997632110 00 00000 00011110 11110 11146899999998642
Q ss_pred HH---H--HHHhhhhcceEEEEEecCc------------------------cCCCCC----------CHHHHHHHHHHH-
Q psy12244 109 SN---E--VTRSLAACQGVVLLIDANQ------------------------VDLKNA----------NPEACEEQLQTL- 148 (257)
Q Consensus 109 ~~---~--~~~~~~~aD~~ilVvd~~~------------------------~D~~~~----------~~~~~~~~~~~~- 148 (257)
.. . ....+..+|++++|.+..- +|+... ..+..++++++.
T Consensus 66 ~~~~~~~l~~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~ 145 (197)
T cd04104 66 AFPPDDYLEEMKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred cCCHHHHHHHhCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence 11 1 1223567899888865442 565211 122333333332
Q ss_pred ---h---CCCccceEEeccc--ccccccccccccC
Q psy12244 149 ---F---NIDKKSVLRIWHR--RCFSCADCHRSLD 175 (257)
Q Consensus 149 ---~---~~~~~~~i~iSa~--~g~gi~~l~~~i~ 175 (257)
+ +....++|.+|+. .+.|+..|.+.|.
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~ 180 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLL 180 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHH
Confidence 2 2344578999998 5788888777765
No 281
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.10 E-value=1.7e-10 Score=90.22 Aligned_cols=83 Identities=19% Similarity=0.404 Sum_probs=52.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+.+.|.|+|+.|+|||+|+.+|.+.... .|.........+.. .......+.+||+|||.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~--------------------~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~ 60 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTV--------------------PTVTSMENNIAYNV-NNSKGKKLRLVDIPGHP 60 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-----------------------B---SSEEEECCG-SSTCGTCECEEEETT-H
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcC--------------------CeeccccCCceEEe-ecCCCCEEEEEECCCcH
Confidence 3467999999999999999999764211 11111111111110 02334578899999999
Q ss_pred ccHHHHHHh---hhhcceEEEEEecCc
Q psy12244 107 DFSNEVTRS---LAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~~~~~~~~~---~~~aD~~ilVvd~~~ 130 (257)
++....... ...+.++|+|||+..
T Consensus 61 rlr~~~~~~~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 61 RLRSKLLDELKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp CCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred HHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence 988776665 788999999999973
No 282
>KOG0072|consensus
Probab=99.09 E-value=8.3e-11 Score=86.47 Aligned_cols=127 Identities=13% Similarity=0.180 Sum_probs=90.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..++.++|-.|+||+|++-++ ..+..+ ....|+..+...+.|+. -++.+||..|+
T Consensus 16 e~e~rililgldGaGkttIlyrl--qvgevv---------------ttkPtigfnve~v~yKN------Lk~~vwdLggq 72 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRL--QVGEVV---------------TTKPTIGFNVETVPYKN------LKFQVWDLGGQ 72 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEc--ccCccc---------------ccCCCCCcCcccccccc------ccceeeEccCc
Confidence 35667999999999999988776 222211 12245566666677765 68999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHhCCC-----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLFNID----- 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~~~~----- 152 (257)
......|..++...|.+|+|||+.+ ..+.+........++...+++.
T Consensus 73 tSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r 152 (182)
T KOG0072|consen 73 TSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR 152 (182)
T ss_pred ccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh
Confidence 9999999999999999999999998 1111111122222333333322
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+|..||.+|+|++...+++.
T Consensus 153 ~~~Iv~tSA~kg~Gld~~~DWL~ 175 (182)
T KOG0072|consen 153 IWQIVKTSAVKGEGLDPAMDWLQ 175 (182)
T ss_pred eeEEEeeccccccCCcHHHHHHH
Confidence 23589999999999999988886
No 283
>PTZ00099 rab6; Provisional
Probab=99.09 E-value=1.3e-10 Score=91.46 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=62.1
Q ss_pred CCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC---C
Q psy12244 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA---N 137 (257)
Q Consensus 91 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~---~ 137 (257)
++....+.||||||+++|...+..+++.+|++|+|+|+++ +|+... .
T Consensus 25 ~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~ 104 (176)
T PTZ00099 25 DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVT 104 (176)
T ss_pred CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCC
Confidence 4556899999999999999988899999999999999987 555321 1
Q ss_pred HHHHHHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 138 PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.++.. .....+ ...++++||++|.||++++++|.+
T Consensus 105 ~~e~~-~~~~~~---~~~~~e~SAk~g~nV~~lf~~l~~ 139 (176)
T PTZ00099 105 YEEGM-QKAQEY---NTMFHETSAKAGHNIKVLFKKIAA 139 (176)
T ss_pred HHHHH-HHHHHc---CCEEEEEECCCCCCHHHHHHHHHH
Confidence 12221 122222 235899999999999999998874
No 284
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.08 E-value=3.3e-10 Score=97.08 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=86.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------CCcccccchHHHh---hhCceEeceeeEEEeec-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------GSSQVLDSLQVEQ---ERGITVKAQTASLRYTS- 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------~~~~~~d~~~~e~---~~g~t~~~~~~~~~~~~- 88 (257)
.+...|+|.|.+|+|||||+++|.......... +++...|..+.+. .++.-+..........+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 467789999999999999999976533211110 1112223333221 11211111111111110
Q ss_pred ---------ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC
Q psy12244 89 ---------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN 137 (257)
Q Consensus 89 ---------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~ 137 (257)
..+...+.+.|+||+|...-... ....+|.+++|++... +|+....
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~ 210 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDNKT 210 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccchh
Confidence 01223478999999998843222 4667999999986222 4543322
Q ss_pred -HHHHHHHHHHHhCCC-------ccceEEecccccccccccccccCC
Q psy12244 138 -PEACEEQLQTLFNID-------KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 -~~~~~~~~~~~~~~~-------~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
......+++..+.+. ..|++++||++|.|+++|++.|..
T Consensus 211 ~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~ 257 (332)
T PRK09435 211 AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIED 257 (332)
T ss_pred HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 344555666555431 257999999999999999999984
No 285
>KOG0074|consensus
Probab=99.08 E-value=9.7e-10 Score=80.66 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=64.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|.++|-.|+||||++.+|-.... +.-..|-.+++..+.+.+ .+++++||..|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-----------------~hltpT~GFn~k~v~~~g-----~f~LnvwDiGGq 72 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-----------------RHLTPTNGFNTKKVEYDG-----TFHLNVWDIGGQ 72 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-----------------hhccccCCcceEEEeecC-----cEEEEEEecCCc
Confidence 5667899999999999999999833111 111223334445555544 389999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
......|.+++.+.|++|+|+|+++
T Consensus 73 r~IRpyWsNYyenvd~lIyVIDS~D 97 (185)
T KOG0074|consen 73 RGIRPYWSNYYENVDGLIYVIDSTD 97 (185)
T ss_pred cccchhhhhhhhccceEEEEEeCCc
Confidence 9999999999999999999999876
No 286
>PTZ00258 GTP-binding protein; Provisional
Probab=99.07 E-value=4.6e-10 Score=97.96 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=61.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc-----------CCccE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL-----------DGEEY 95 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~-----------~~~~~ 95 (257)
...+|+|+|.+|+|||||+|+|.+....+ ...++.|+++....+.+.... .....
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v--------------~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~a 85 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPA--------------ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPA 85 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccc--------------cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCC
Confidence 44579999999999999999996533221 113456666666666554200 00124
Q ss_pred EEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
++.|+||||... +.......++.+|++++|||+..
T Consensus 86 qi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~ 127 (390)
T PTZ00258 86 QLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFE 127 (390)
T ss_pred CeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 689999999753 33455667899999999999864
No 287
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.06 E-value=4.3e-10 Score=94.03 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=58.2
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc--------C---CccEEEEE
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL--------D---GEEYLLNL 99 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--------~---~~~~~~~l 99 (257)
|+|+|.+|+|||||+|+|++..... ...++.|+++..+.+.+.+.. . .....+.|
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~--------------~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~l 66 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA--------------ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEF 66 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc--------------ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEE
Confidence 5899999999999999997643321 112455666666655554300 0 01136999
Q ss_pred eCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 100 IDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 100 iDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+|+||..+ +.......++.+|++++|||+..
T Consensus 67 vD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 67 VDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 99999653 33345567789999999999864
No 288
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.04 E-value=2.7e-09 Score=89.98 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=59.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+||||++|+|++......+. + ...+.........+.+ ..+++|||||..
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~--------f-----~s~t~~~~~~~~~~~G------~~l~VIDTPGL~ 97 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSA--------F-----QSEGLRPMMVSRTRAG------FTLNIIDTPGLI 97 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC--------C-----CCcceeEEEEEEEECC------eEEEEEECCCCC
Confidence 45689999999999999999998754332211 0 0111111111222333 789999999988
Q ss_pred ccHH---HHHHhhh------hcceEEEEEecCccCCCCCCHHHHHHHHHHHhC
Q psy12244 107 DFSN---EVTRSLA------ACQGVVLLIDANQVDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 107 ~~~~---~~~~~~~------~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~ 150 (257)
+... .....+. ..|++++|...+... .........+.+++.||
T Consensus 98 d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG 149 (313)
T TIGR00991 98 EGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFG 149 (313)
T ss_pred chHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhh
Confidence 6422 1222222 588999995433211 11122445666777665
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.03 E-value=9.6e-10 Score=94.94 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=59.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCC---ccEEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDG---EEYLL 97 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~---~~~~~ 97 (257)
.+|+|+|.+|+|||||+|+|++....+ ...++.|+++....+.+... +.. ....+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v--------------~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i 68 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA--------------ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATI 68 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee--------------cccccccccceEEEEEeccccchhhHHhcCCccccCceE
Confidence 479999999999999999997644211 11245566666555554330 000 11368
Q ss_pred EEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 98 NLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 98 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.|+|+||... +.......++.+|++++|||+..
T Consensus 69 ~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 69 EFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred EEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 9999999753 33345667889999999999964
No 290
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.99 E-value=3.2e-09 Score=86.08 Aligned_cols=103 Identities=22% Similarity=0.307 Sum_probs=61.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
++|+++|.+|+||||++|.|++........ .....|.........+.+ ..+.+|||||+.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~------------~~~~~t~~~~~~~~~~~g------~~v~VIDTPGl~d~ 62 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS------------SAKSVTQECQKYSGEVDG------RQVTVIDTPGLFDS 62 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T------------TTSS--SS-EEEEEEETT------EEEEEEE--SSEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc------------ccCCcccccceeeeeecc------eEEEEEeCCCCCCC
Confidence 479999999999999999998754321110 112233333344445555 7899999999865
Q ss_pred ------cHHHHHH----hhhhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCC
Q psy12244 108 ------FSNEVTR----SLAACQGVVLLIDANQVDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 108 ------~~~~~~~----~~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
....+.. .....+++|||+....+. .......+.+.+.||..
T Consensus 63 ~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t---~~~~~~l~~l~~~FG~~ 114 (212)
T PF04548_consen 63 DGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFT---EEDREVLELLQEIFGEE 114 (212)
T ss_dssp TEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-S---HHHHHHHHHHHHHHCGG
T ss_pred cccHHHHHHHHHHHHHhccCCCeEEEEEEecCcch---HHHHHHHHHHHHHccHH
Confidence 1222332 234589999999877432 22456677778877743
No 291
>KOG4252|consensus
Probab=98.99 E-value=2.7e-11 Score=92.23 Aligned_cols=130 Identities=21% Similarity=0.250 Sum_probs=86.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.++..+++|+|..++||||++.++|. |...... +..+..+.-..++.. ..+.....+|||+|
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCk--gifTkdy------------kktIgvdflerqi~v----~~Edvr~mlWdtag 78 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKDY------------KKTIGVDFLERQIKV----LIEDVRSMLWDTAG 78 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhc--ccccccc------------ccccchhhhhHHHHh----hHHHHHHHHHHhcc
Confidence 35667899999999999999999974 2222210 001111111111111 22335677999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++.|-..+..++++|.+.+||++.++ ||+.+.. .....+.+.+.+.
T Consensus 79 qeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~--- 155 (246)
T KOG4252|consen 79 QEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH--- 155 (246)
T ss_pred chhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhh---
Confidence 99999999999999999999999888 6664432 1122223333332
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++.+|++...|+..+|.+|.
T Consensus 156 ~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 156 KRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred hhhhhhhhhhhhhhHHHHHHHH
Confidence 4578999999999999988886
No 292
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.98 E-value=3.1e-09 Score=89.46 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=42.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|+........... +.......+.+++. ........ ++....+++|||||+.+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~----~~~~~~~~~T~~i~--~~~~~i~~--~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPP----DPAEEHIDKTVEIK--SSKAEIEE--NGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCC----CccccccCCceEEE--EEEEEEEE--CCEEEEEEEEecCCccc
Confidence 468999999999999999999764332211100 00001112222233 22222322 44557899999999866
Q ss_pred c
Q psy12244 108 F 108 (257)
Q Consensus 108 ~ 108 (257)
+
T Consensus 76 ~ 76 (276)
T cd01850 76 N 76 (276)
T ss_pred c
Confidence 4
No 293
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.97 E-value=2.1e-09 Score=92.00 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=54.0
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec----------------c-cCC-
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS----------------I-LDG- 92 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~----------------~-~~~- 92 (257)
|+++|.+|+|||||+|+|+.....+.. .+..|+++......+.. . .++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~--------------~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 66 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIAN--------------YPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGK 66 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccC--------------CCCccccceeEEEEEecCCCchhhhhhhcccccccccCc
Confidence 589999999999999999764321111 11223333333222210 0 011
Q ss_pred ccEEEEEeCCCCCc----ccH---HHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHV----DFS---NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~----~~~---~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+...+.+|||||.. .+. ......++.||++++|+|+..
T Consensus 67 ~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 67 RYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 23579999999983 332 345567899999999999985
No 294
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.97 E-value=1.6e-09 Score=90.99 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=82.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
-|++||-||+|||||++++......+....+ .|+.++...+.... ...|.+-|.||...
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpF--------------TTL~PnLGvV~~~~-----~~sfv~ADIPGLIEGA 221 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPF--------------TTLVPNLGVVRVDG-----GESFVVADIPGLIEGA 221 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCcc--------------ccccCcccEEEecC-----CCcEEEecCccccccc
Confidence 5789999999999999999776655544322 23444444444322 15689999999754
Q ss_pred -----cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCC--CHHHHHHHH
Q psy12244 108 -----FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNA--NPEACEEQL 145 (257)
Q Consensus 108 -----~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~--~~~~~~~~~ 145 (257)
+-...+..+..+.+++.|||.+. +|+... ..+...+.+
T Consensus 222 s~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l 301 (369)
T COG0536 222 SEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKAL 301 (369)
T ss_pred ccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHH
Confidence 33445677788899999999996 664322 233334444
Q ss_pred HHHhCCCccceEEecccccccccccccccC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+..+.. ..++|||.+++|+++|.+.+.
T Consensus 302 ~~~~~~~--~~~~ISa~t~~g~~~L~~~~~ 329 (369)
T COG0536 302 AEALGWE--VFYLISALTREGLDELLRALA 329 (369)
T ss_pred HHhcCCC--cceeeehhcccCHHHHHHHHH
Confidence 4433322 123399999999998876665
No 295
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.96 E-value=3.7e-09 Score=86.24 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=55.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|+.++||||+.+.+......- ....-+.|.+.....+.+.+. ..+++||+||+..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-------------dT~~L~~T~~ve~~~v~~~~~-----~~l~iwD~pGq~~~~ 62 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-------------DTLRLEPTIDVEKSHVRFLSF-----LPLNIWDCPGQDDFM 62 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-------------GGGG-----SEEEEEEECTTS-----CEEEEEEE-SSCSTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-------------hccccCCcCCceEEEEecCCC-----cEEEEEEcCCccccc
Confidence 58999999999999999886432211 112234666665555654431 589999999998876
Q ss_pred HH-----HHHhhhhcceEEEEEecCc
Q psy12244 110 NE-----VTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~-----~~~~~~~aD~~ilVvd~~~ 130 (257)
.. ....++.++++|+|+|+..
T Consensus 63 ~~~~~~~~~~if~~v~~LIyV~D~qs 88 (232)
T PF04670_consen 63 ENYFNSQREEIFSNVGVLIYVFDAQS 88 (232)
T ss_dssp HTTHTCCHHHHHCTESEEEEEEETT-
T ss_pred cccccccHHHHHhccCEEEEEEEccc
Confidence 65 3456788999999999994
No 296
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.96 E-value=2.8e-09 Score=93.83 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=55.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------------cC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------------LD 91 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------------~~ 91 (257)
.+|+|+|.+|+|||||+|+|++....+.. .++.|+++.......... .+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~--------------y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~ 67 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIAN--------------YPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCID 67 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccC--------------CCCcceeeeeeeeeeccCCchhhhhhhhccccccccC
Confidence 57999999999999999999754322111 122343433332221000 01
Q ss_pred -CccEEEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecC
Q psy12244 92 -GEEYLLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 92 -~~~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
.....+.|+||||... .....+..++.+|++++|+|+.
T Consensus 68 ~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 68 GTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 1225789999999642 3335566689999999999996
No 297
>KOG0393|consensus
Probab=98.92 E-value=6.4e-10 Score=87.52 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=84.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...++++||..++|||+|+-.+. ++........+++|.+ ...+... +++.+.+.+|||+|++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t--~~~fp~~yvPTVFdny-------------s~~v~V~---dg~~v~L~LwDTAGqe 64 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYT--TNAFPEEYVPTVFDNY-------------SANVTVD---DGKPVELGLWDTAGQE 64 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEec--cCcCcccccCeEEccc-------------eEEEEec---CCCEEEEeeeecCCCc
Confidence 34679999999999999997763 3332222222222211 1122221 3667889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH---------------HHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP---------------EAC 141 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~---------------~~~ 141 (257)
+|.......+..+|.++++++..+ .|+.. +. ...
T Consensus 65 dYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~-d~~~~~~l~~~~~~~Vt~~~ 143 (198)
T KOG0393|consen 65 DYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD-DPSTLEKLQRQGLEPVTYEQ 143 (198)
T ss_pred ccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh-CHHHHHHHHhccCCcccHHH
Confidence 998866678899999999888777 44431 11 011
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
...+++.+| ...++++||++..|+.++|+.....
T Consensus 144 g~~lA~~ig--a~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 144 GLELAKEIG--AVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred HHHHHHHhC--cceeeeehhhhhCCcHHHHHHHHHH
Confidence 112333333 2468999999999999988766543
No 298
>KOG0410|consensus
Probab=98.91 E-value=2.4e-09 Score=89.22 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=76.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
...+.|++||.+|+|||||+++|+... ...+... --|.++........ ....+.+.||-|+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aa-l~p~drL-------------FATLDpT~h~a~Lp-----sg~~vlltDTvGF 236 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAA-LYPNDRL-------------FATLDPTLHSAHLP-----SGNFVLLTDTVGF 236 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhh-cCccchh-------------heeccchhhhccCC-----CCcEEEEeechhh
Confidence 345689999999999999999997422 2211100 11333322222222 1257889999998
Q ss_pred ccc--------HHHHHHhhhhcceEEEEEecCc----------------cCCCCCC-HHHHHHHHHHHhCC-------Cc
Q psy12244 106 VDF--------SNEVTRSLAACQGVVLLIDANQ----------------VDLKNAN-PEACEEQLQTLFNI-------DK 153 (257)
Q Consensus 106 ~~~--------~~~~~~~~~~aD~~ilVvd~~~----------------~D~~~~~-~~~~~~~~~~~~~~-------~~ 153 (257)
-.- ...++.....+|+++-|+|.+. ++.+.+- .+.+.+ +-..... ..
T Consensus 237 isdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mie-VdnkiD~e~~~~e~E~ 315 (410)
T KOG0410|consen 237 ISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIE-VDNKIDYEEDEVEEEK 315 (410)
T ss_pred hhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHh-hccccccccccCcccc
Confidence 651 1223444567999999999997 3332211 111111 1000000 01
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++||++|+|++++.+.++
T Consensus 316 n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 316 NLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred CCccccccccCccHHHHHHHHH
Confidence 1258999999999999988776
No 299
>KOG1673|consensus
Probab=98.90 E-value=1.9e-09 Score=80.41 Aligned_cols=131 Identities=12% Similarity=0.206 Sum_probs=92.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|.++|.+..|||||+-.+++ +.+.++......++.....+.. .+....+.+||..|++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~--------------~~~de~~~q~~GvN~mdkt~~i----~~t~IsfSIwdlgG~~ 80 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQ--------------NEYDEEYTQTLGVNFMDKTVSI----RGTDISFSIWDLGGQR 80 (205)
T ss_pred eEEEEEeecccccCceeeehhhhc--------------chhHHHHHHHhCccceeeEEEe----cceEEEEEEEecCCcH
Confidence 357899999999999999988754 2233333333333322223332 3455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
+|..+..-+...+-+++|++|.+. +|++.+..+.+..+.+.+...-.
T Consensus 81 ~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn 160 (205)
T KOG1673|consen 81 EFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMN 160 (205)
T ss_pred hhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 998887777788888999999998 66665444455555555444444
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++.|.+|+.+..|++.+|..+.
T Consensus 161 AsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 161 ASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred CcEEEeeccccccHHHHHHHHH
Confidence 6689999999999998887654
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.83 E-value=1.9e-10 Score=94.64 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=45.1
Q ss_pred EEEEeCCCCCcccHHHHHHh------h--hhcceEEEEEecCc-------------------------------cCCCCC
Q psy12244 96 LLNLIDTPGHVDFSNEVTRS------L--AACQGVVLLIDANQ-------------------------------VDLKNA 136 (257)
Q Consensus 96 ~~~liDtpG~~~~~~~~~~~------~--~~aD~~ilVvd~~~-------------------------------~D~~~~ 136 (257)
.+.++|||||.++...+... + ...=++++++|+.. +|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 68899999998855443332 2 23446889999987 676541
Q ss_pred C---------------------HHHHHHHHHHHh-CCCcc-ceEEecccccccccccccccC
Q psy12244 137 N---------------------PEACEEQLQTLF-NIDKK-SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 137 ~---------------------~~~~~~~~~~~~-~~~~~-~~i~iSa~~g~gi~~l~~~i~ 175 (257)
. .....+.+.+.+ .+... +++++|+++++|+++|+..+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id 233 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAID 233 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHH
Confidence 1 122222334433 33334 699999999999999987765
No 301
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.83 E-value=1.4e-08 Score=81.39 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=52.5
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCC---CCHHHHHHHHHHHh
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKN---ANPEACEEQLQTLF 149 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~---~~~~~~~~~~~~~~ 149 (257)
....+|+|.|..- ..... ...+|.++.|+|+.. +|+.+ .+.+...+.++..
T Consensus 92 ~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~- 167 (199)
T TIGR00101 92 LEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKM- 167 (199)
T ss_pred CCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHh-
Confidence 5678999999321 11111 122688999999876 56543 3345555666664
Q ss_pred CCCccceEEecccccccccccccccCC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+..++|++||++|+|+++++++|.+
T Consensus 168 -~~~~~i~~~Sa~~g~gi~el~~~i~~ 193 (199)
T TIGR00101 168 -RGEKPFIFTNLKTKEGLDTVIDWIEH 193 (199)
T ss_pred -CCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 23578999999999999999998874
No 302
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.80 E-value=3.9e-09 Score=82.14 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=29.3
Q ss_pred EEEEEeCCCCCcc----cHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVD----FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~----~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.|+||||..+ ....+..++..+|++|+|+++..
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc
Confidence 4689999999865 22556777899999999999885
No 303
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.79 E-value=5.6e-08 Score=88.90 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=61.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|+++|.+|+|||||+|.|++........ ...+.| ........+.+ ..+.+|||||..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss------------~~~~TT-r~~ei~~~idG------~~L~VIDTPGL~ 177 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDA------------FGMGTT-SVQEIEGLVQG------VKIRVIDTPGLK 177 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccC------------CCCCce-EEEEEEEEECC------ceEEEEECCCCC
Confidence 34689999999999999999998754322111 011222 22122222333 679999999987
Q ss_pred ccH------HH----HHHhhh--hcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCC
Q psy12244 107 DFS------NE----VTRSLA--ACQGVVLLIDANQVDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~------~~----~~~~~~--~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
+.. .. ....+. .+|++|+|..... ...........+.+++.||..
T Consensus 178 dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~-~~~D~eD~~aLr~Iq~lFG~~ 234 (763)
T TIGR00993 178 SSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDM-QTRDSNDLPLLRTITDVLGPS 234 (763)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-ccccHHHHHHHHHHHHHhCHH
Confidence 631 12 222333 4788888875431 111111235677788888644
No 304
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=5e-08 Score=83.43 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=59.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc----------c--CCccEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI----------L--DGEEYL 96 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----------~--~~~~~~ 96 (257)
.+++|||.||+|||||+|+++.....+.+..+ .|++++...+....- | .-....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF--------------~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ 68 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPF--------------CTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAP 68 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCc--------------ccccCCeeEEecCchHHHHHHHhcCCCCcEEeee
Confidence 57999999999999999999875533333222 233333333222110 0 011257
Q ss_pred EEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 97 LNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 97 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+.|+|.+|... +-...+..++.+|+++.|||+..
T Consensus 69 ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 69 VEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 89999999754 45566778999999999999996
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.78 E-value=2.5e-08 Score=80.52 Aligned_cols=146 Identities=13% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCcccc-----CCCcccccchHHHhhhCce-EeceeeEEEe-ec------c-
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-----SGSSQVLDSLQVEQERGIT-VKAQTASLRY-TS------I- 89 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~-----~~~~~~~d~~~~e~~~g~t-~~~~~~~~~~-~~------~- 89 (257)
+...+++|+++|+.|+|||||+++++........ .+.....|....+ +.+.. +......... .. +
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 4457899999999999999999999876332111 0111112332222 22211 1111110000 00 0
Q ss_pred -cCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCC---CHHHHHH
Q psy12244 90 -LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNA---NPEACEE 143 (257)
Q Consensus 90 -~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~---~~~~~~~ 143 (257)
.......+.||+|.|...... ......+..+.|+|+.. +|+.+. +..+..+
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~ 173 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADLAEAVGFDVEKMKA 173 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHccccchhhHHHHHH
Confidence 001134788999999211110 11112344556666654 666432 1334444
Q ss_pred HHHHHhCCCccceEEecccccccccccccccC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++.. +..|++++||++|.|++++++++.
T Consensus 174 ~l~~~~--~~~~i~~~Sa~~g~gv~~l~~~i~ 203 (207)
T TIGR00073 174 DAKKIN--PEAEIILMSLKTGEGLDEWLEFLE 203 (207)
T ss_pred HHHHhC--CCCCEEEEECCCCCCHHHHHHHHH
Confidence 444432 346899999999999999998876
No 306
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8e-09 Score=96.27 Aligned_cols=60 Identities=43% Similarity=0.738 Sum_probs=55.5
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCcc----ccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ----VLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~----~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+.|++.+.+|+++||+|+.++|++..|.+.++|... ++|+++.|++|||||+++.+++
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~ 70 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTL 70 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEE
Confidence 45679999999999999999999999999999988855 9999999999999999999874
No 307
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=1.3e-08 Score=78.54 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=37.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+..+|+++|.+|+|||||+|+|+........ ..+|.|.... .+... ..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-------------~~~g~T~~~~--~~~~~-------~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-------------PIPGETKVWQ--YITLM-------KRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-------------CCCCeeEeEE--EEEcC-------CCEEEEECcCC
Confidence 3467899999999999999999764433222 2345554322 11111 24789999994
No 308
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.72 E-value=2.7e-08 Score=77.62 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=81.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccc-----cCCCcccccchHHHhhhC-ceEeceeeEEEeec-------c----c
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVL-----SSGSSQVLDSLQVEQERG-ITVKAQTASLRYTS-------I----L 90 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~-----~~~~~~~~d~~~~e~~~g-~t~~~~~~~~~~~~-------~----~ 90 (257)
.+.|.+.|++|||||+|+.+++.....-. ..+..+..|.....+..+ ..+...+...+... + .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 57899999999999999999876432211 113333333333333122 12222222111000 0 0
Q ss_pred CCccEEEEEeCCCCCcccHHHHHHhhhhcc-eEEEEEecCc----------------------cCC---CCCCHHHHHHH
Q psy12244 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQ-GVVLLIDANQ----------------------VDL---KNANPEACEEQ 144 (257)
Q Consensus 91 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD-~~ilVvd~~~----------------------~D~---~~~~~~~~~~~ 144 (257)
+.....+.||...| ...... .....| +-|+|+|... .|+ .+.+.+.+.+.
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~d 168 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYVGADLEVMARD 168 (202)
T ss_pred cCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHhCccHHHHHHH
Confidence 01114677788777 211111 112233 6778888877 444 34566777777
Q ss_pred HHHHhCCCccceEEecccccccccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++. .+..||+++|+++|+|++++.+++.
T Consensus 169 a~~~--np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 169 AKEV--NPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred HHHh--CCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 7765 3567899999999999999988876
No 309
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.71 E-value=1.1e-07 Score=82.62 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=61.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC---CCcccccchHHHhhhC---ceEecee---eEEEeecccCCccEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS---GSSQVLDSLQVEQERG---ITVKAQT---ASLRYTSILDGEEYL 96 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~---~~~~~~d~~~~e~~~g---~t~~~~~---~~~~~~~~~~~~~~~ 96 (257)
.....|+++|++++|||||+|+|........-. ......|.++.+ ..| .|.++.+ ..++.... ++....
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~~~-~~~~~~ 92 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEININ-EGTKFK 92 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcC-CCCCCcccCCCccccCcceEEecc-CCCccc
Confidence 345569999999999999999998763222111 111122222211 235 4555555 33444331 455578
Q ss_pred EEEeCCCCCcc-------------------------cHHH----HHHhhh-hcceEEEEE-ecC
Q psy12244 97 LNLIDTPGHVD-------------------------FSNE----VTRSLA-ACQGVVLLI-DAN 129 (257)
Q Consensus 97 ~~liDtpG~~~-------------------------~~~~----~~~~~~-~aD~~ilVv-d~~ 129 (257)
+.|+||+|+.+ |... +...+. .+|..|+|. |++
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgs 156 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGT 156 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCC
Confidence 99999999754 2222 333455 789999999 886
No 310
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.71 E-value=1.8e-08 Score=78.85 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=38.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+++++|.+|+|||||+|+|++...... ...+|.|...... .+. ..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-------------~~~pg~T~~~~~~--~~~-------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV-------------GATPGVTKSMQEV--HLD-------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee-------------cCCCCeEcceEEE--EeC-------CCEEEEECcCC
Confidence 46899999999999999999986543322 2345666643322 221 35889999994
No 311
>KOG0462|consensus
Probab=98.69 E-value=1.9e-08 Score=89.11 Aligned_cols=64 Identities=73% Similarity=0.988 Sum_probs=57.3
Q ss_pred CCcchhhhcceeeEeeecccchhhHHHHHHhhCCccc-CCCccccCChhhHhhhCceEeeeeeeC
Q psy12244 194 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 194 ~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~-~g~~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+|.++.|+++++.||+.||+|+.|+++..+|++.+ .+..+++|.++.|+||||||++..+++
T Consensus 53 ~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasi 117 (650)
T KOG0462|consen 53 SLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASI 117 (650)
T ss_pred ccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEE
Confidence 3567788999999999999999999999999998765 466889999999999999999988764
No 312
>KOG0090|consensus
Probab=98.69 E-value=2.1e-08 Score=78.89 Aligned_cols=83 Identities=19% Similarity=0.361 Sum_probs=60.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+.|.++|..|+|||+|+-+|++... +..-.++..+.+.+.+.. ..+++||.|||.
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~-----------------~~TvtSiepn~a~~r~gs------~~~~LVD~PGH~ 93 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH-----------------RGTVTSIEPNEATYRLGS------ENVTLVDLPGHS 93 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc-----------------cCeeeeeccceeeEeecC------cceEEEeCCCcH
Confidence 346799999999999999999965311 011123444455555544 458899999999
Q ss_pred ccHHHHHHhhh---hcceEEEEEecCccC
Q psy12244 107 DFSNEVTRSLA---ACQGVVLLIDANQVD 132 (257)
Q Consensus 107 ~~~~~~~~~~~---~aD~~ilVvd~~~~D 132 (257)
+........+. .+-+++||||+...+
T Consensus 94 rlR~kl~e~~~~~~~akaiVFVVDSa~f~ 122 (238)
T KOG0090|consen 94 RLRRKLLEYLKHNYSAKAIVFVVDSATFL 122 (238)
T ss_pred HHHHHHHHHccccccceeEEEEEeccccc
Confidence 98887777775 788999999998644
No 313
>KOG1532|consensus
Probab=98.68 E-value=5.3e-09 Score=85.37 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=23.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+++..|.++|..|+||||++.+|......
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 45677999999999999999999764443
No 314
>KOG0077|consensus
Probab=98.68 E-value=1.5e-07 Score=71.11 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=60.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.-+++++|--|+|||||+..|-...-. +.-.|.-+........+ ..++-+|..||
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-----------------qhvPTlHPTSE~l~Ig~------m~ftt~DLGGH 74 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-----------------QHVPTLHPTSEELSIGG------MTFTTFDLGGH 74 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-----------------ccCCCcCCChHHheecC------ceEEEEccccH
Confidence 34567999999999999999988321111 11123322233333444 68899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..-...+..++..+|+++++||+-+
T Consensus 75 ~qArr~wkdyf~~v~~iv~lvda~d 99 (193)
T KOG0077|consen 75 LQARRVWKDYFPQVDAIVYLVDAYD 99 (193)
T ss_pred HHHHHHHHHHHhhhceeEeeeehhh
Confidence 9999999999999999999999987
No 315
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.67 E-value=1.4e-08 Score=77.86 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=34.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+.++++|++|||||||+|+|+....... ........+|.........+.+.. ...+|||||+.+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t--------~~is~~~~rGkHTTt~~~l~~l~~-------g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT--------GEISEKTGRGKHTTTHRELFPLPD-------GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------------S--------------SEEEEEETT-------SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh--------hhhhcccCCCcccCCCeeEEecCC-------CcEEEECCCCCcc
Confidence 6799999999999999999976432211 111222223322222233333321 3469999998765
No 316
>KOG2486|consensus
Probab=98.65 E-value=9.2e-08 Score=78.38 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=58.2
Q ss_pred CCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 18 TPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 18 ~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
....++|..+.+.+++.|.+|+|||+|+|.++......... ....|.|...+...+. ..+
T Consensus 126 ~~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~-----------k~K~g~Tq~in~f~v~---------~~~ 185 (320)
T KOG2486|consen 126 VTAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTS-----------KSKNGKTQAINHFHVG---------KSW 185 (320)
T ss_pred ceeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhc-----------CCCCccceeeeeeecc---------ceE
Confidence 33446777788899999999999999999997644322111 1134445443333221 578
Q ss_pred EEeCCCCCc----------ccHHHHHHhh---hhcceEEEEEecCc
Q psy12244 98 NLIDTPGHV----------DFSNEVTRSL---AACQGVVLLIDANQ 130 (257)
Q Consensus 98 ~liDtpG~~----------~~~~~~~~~~---~~aD~~ilVvd~~~ 130 (257)
.++|.||+. ++.+.+..++ ...=.+++++|++.
T Consensus 186 ~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv 231 (320)
T KOG2486|consen 186 YEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASV 231 (320)
T ss_pred EEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccC
Confidence 899999932 2444444444 23344677788876
No 317
>KOG0052|consensus
Probab=98.61 E-value=8.7e-09 Score=88.16 Aligned_cols=94 Identities=33% Similarity=0.504 Sum_probs=76.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
...++|+++||.++||||+.. +.++.++.. .++|.+|....|++++++++.....+
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~---- 77 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF---- 77 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecc----
Confidence 345789999999999999887 344544433 56799999999999998866433333
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEec
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~ 128 (257)
....+.++++|.|||.+|.+++..+.+.||++++++.+
T Consensus 78 --~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~ 115 (391)
T KOG0052|consen 78 --ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 115 (391)
T ss_pred --cceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEee
Confidence 33448999999999999999999999999999999988
No 318
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.61 E-value=1.3e-07 Score=82.00 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+.+|+|+|.+|+|||||+|+|.+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999954
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.60 E-value=2.5e-08 Score=81.49 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=81.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------CCcccccchHHH---hhhCceEeceeeEEEeec--
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------GSSQVLDSLQVE---QERGITVKAQTASLRYTS-- 88 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------~~~~~~d~~~~e---~~~g~t~~~~~~~~~~~~-- 88 (257)
+.+.|+|.|++|+|||||+++|.......... .++..-|+.+.. .+.++-+.+....=...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 56789999999999999999987533221111 344455554433 233443332221111100
Q ss_pred --------ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------cCC---CCCC---HHH
Q psy12244 89 --------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------VDL---KNAN---PEA 140 (257)
Q Consensus 89 --------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------~D~---~~~~---~~~ 140 (257)
+++-..+.+.||.|.|..+-.- .-...+|.+++|+-... .|+ .++| .+.
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~~gA~~ 184 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADRPGADR 184 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SHHHHHH
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCChHHHHH
Confidence 0122357888999999775332 23567899999886665 222 1223 234
Q ss_pred HHHHHHHHhCC-------CccceEEecccccccccccccccCC
Q psy12244 141 CEEQLQTLFNI-------DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 141 ~~~~~~~~~~~-------~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++..+.+ ...|++.+||.+|.|+++|++.|..
T Consensus 185 ~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 185 TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 44455544421 1247999999999999999998874
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.59 E-value=1e-07 Score=81.40 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=49.2
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCCH-HHHHH----HHH
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNANP-EACEE----QLQ 146 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~~-~~~~~----~~~ 146 (257)
.+.+.|+||||...-. ...+..+|.++++.+... +|+..... ..... .+.
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~ 202 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEGATNVTIARLMLALALE 202 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccchhHHHHHHHHHHHHHh
Confidence 5789999999976322 234566788877764442 66654321 11111 111
Q ss_pred HHhC---CCccceEEecccccccccccccccCC
Q psy12244 147 TLFN---IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.... ....+++++||++|.|+++++++|..
T Consensus 203 ~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 203 EIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred hccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 1111 01135899999999999999998874
No 321
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.59 E-value=7.6e-08 Score=74.09 Aligned_cols=57 Identities=28% Similarity=0.371 Sum_probs=38.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+..+++++|.+|+|||||+|+|+...... ....++.|.......+ . ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-------------~~~~~~~t~~~~~~~~--~-------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-------------VGNVPGTTTSQQEVKL--D-------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-------------ccCCCCcccceEEEEe--c-------CCEEEEECCCC
Confidence 45779999999999999999997644322 1223455555433221 1 35889999995
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.55 E-value=2.6e-07 Score=77.47 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=31.5
Q ss_pred cCCCCC---CHHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 131 VDLKNA---NPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 131 ~D~~~~---~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+|+... +.+...+.+++.. +..++|++||++|+|+++|.++|.
T Consensus 240 iDLl~~~~~dle~~~~~lr~ln--p~a~I~~vSA~tGeGld~L~~~L~ 285 (290)
T PRK10463 240 VDLLPYLNFDVEKCIACAREVN--PEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred HHcCcccHHHHHHHHHHHHhhC--CCCcEEEEECCCCCCHHHHHHHHH
Confidence 777542 3455555665542 456799999999999999998886
No 323
>PRK13768 GTPase; Provisional
Probab=98.54 E-value=5.7e-08 Score=80.86 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=20.4
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++|++++.|++++.++|.+
T Consensus 222 ~~vi~iSa~~~~gl~~L~~~I~~ 244 (253)
T PRK13768 222 VRVIPVSAKTGEGFDELYAAIQE 244 (253)
T ss_pred CcEEEEECCCCcCHHHHHHHHHH
Confidence 46899999999999999998874
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.54 E-value=9.2e-07 Score=72.65 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+.|+++|+.++||||++++|++..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 45679999999999999999998753
No 325
>KOG1486|consensus
Probab=98.53 E-value=1.3e-07 Score=76.44 Aligned_cols=84 Identities=19% Similarity=0.295 Sum_probs=61.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.-.+|+++|-|.+|||||+..+........+. .-.|.......+.|++ ..++++|.||..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~y--------------eFTTLtcIpGvi~y~g------a~IQllDLPGIi 120 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASY--------------EFTTLTCIPGVIHYNG------ANIQLLDLPGII 120 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhce--------------eeeEEEeecceEEecC------ceEEEecCcccc
Confidence 34579999999999999999997654433221 1134555566677777 789999999975
Q ss_pred c-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 107 D-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
. --.+....++.||++++|+|++.
T Consensus 121 eGAsqgkGRGRQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 121 EGASQGKGRGRQVIAVARTADLILMVLDATK 151 (364)
T ss_pred cccccCCCCCceEEEEeecccEEEEEecCCc
Confidence 4 22345556788999999999986
No 326
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.53 E-value=1e-07 Score=72.19 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.2
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+++++|.+|+|||||+|+|+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999754
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.52 E-value=1.3e-07 Score=75.19 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=65.8
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHH-----HHhCCCccceE
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQ-----TLFNIDKKSVL 157 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~-----~~~~~~~~~~i 157 (257)
|...+...+..+|++++|+|+.+ +|+.... .....+... +..+....+++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 56666667777888888888765 7764322 111111111 11233234689
Q ss_pred EecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 158 RIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
++||++|.|+++|++.|.... + ....+.++|..+.||+++.+.++...
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l-----~---------------~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLA-----K---------------KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHh-----h---------------cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 999999999999998887321 1 11357899999999999999998753
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.50 E-value=1.4e-07 Score=75.03 Aligned_cols=63 Identities=27% Similarity=0.280 Sum_probs=38.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+++++|.+|+|||||+|+|+......... .........+|.|.+.....+ . ..+.+|||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~-----~~~~~~~~~~gtT~~~~~~~~--~-------~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL-----KDLLTTSPIPGTTLDLIKIPL--G-------NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc-----ccccccCCCCCeeeeeEEEec--C-------CCCEEEeCcCC
Confidence 579999999999999999998754211100 000112234566665432222 1 14689999995
No 329
>KOG1490|consensus
Probab=98.48 E-value=3e-07 Score=80.97 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=72.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
...+++.+||.+|+||||++|.+......+. ++. -.|...-...+.|+. ..|+++||||.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevq--pYa------------FTTksL~vGH~dykY------lrwQViDTPGI 225 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ--PYA------------FTTKLLLVGHLDYKY------LRWQVIDTPGI 225 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccC--Ccc------------cccchhhhhhhhhhe------eeeeecCCccc
Confidence 4567899999999999999988743222110 000 012222233344444 57999999997
Q ss_pred cccH------HH--HHHhh-hhcceEEEEEecCc-------------------------------cCCC-CCCHHHHHHH
Q psy12244 106 VDFS------NE--VTRSL-AACQGVVLLIDANQ-------------------------------VDLK-NANPEACEEQ 144 (257)
Q Consensus 106 ~~~~------~~--~~~~~-~~aD~~ilVvd~~~-------------------------------~D~~-~~~~~~~~~~ 144 (257)
-+-. -+ .+.++ +.--+|+++.|.+. +|+- ..+..+..++
T Consensus 226 LD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ 305 (620)
T KOG1490|consen 226 LDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQE 305 (620)
T ss_pred cCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHH
Confidence 5511 11 11121 22245888999887 5552 2233333322
Q ss_pred H-HHHhCCCccceEEecccccccccccc
Q psy12244 145 L-QTLFNIDKKSVLRIWHRRCFSCADCH 171 (257)
Q Consensus 145 ~-~~~~~~~~~~~i~iSa~~g~gi~~l~ 171 (257)
+ +..-.....+++..|+.+-+|+.++.
T Consensus 306 ll~~~~~~~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 306 LLQTIIDDGNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred HHHHHHhccCceEEEecccchhceeeHH
Confidence 2 22223344679999999999997654
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.47 E-value=1e-06 Score=75.06 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=46.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHH-hhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVE-QERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e-~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
-..+|.+||+.|.||||++|.|+.....-.. ..+..+.. .. .|+........... ++....+++|||||+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~-----~~~~~~~~~~~--~~~~i~~~~~~l~e--~~~~~~l~vIDtpGf 92 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDET-----EIDDIRAEGTS--PTLEIKITKAELEE--DGFHLNLTVIDTPGF 92 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCC-----CccCcccccCC--cceEEEeeeeeeec--CCeEEEEEEeccCCc
Confidence 4578999999999999999999886221110 11111111 12 23333344444444 566678999999999
Q ss_pred ccc
Q psy12244 106 VDF 108 (257)
Q Consensus 106 ~~~ 108 (257)
.++
T Consensus 93 GD~ 95 (373)
T COG5019 93 GDF 95 (373)
T ss_pred ccc
Confidence 874
No 331
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.47 E-value=2.4e-07 Score=78.61 Aligned_cols=59 Identities=32% Similarity=0.313 Sum_probs=40.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+++++|.+|+|||||+|+|++...... ...+|.|..... +... ..+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-------------~~~~g~T~~~~~--~~~~-------~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT-------------GNRPGVTKAQQW--IKLG-------KGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccc-------------CCCCCeEEEEEE--EEeC-------CcEEEEECCCcC
Confidence 446799999999999999999976433221 124566765432 2221 357899999975
Q ss_pred c
Q psy12244 107 D 107 (257)
Q Consensus 107 ~ 107 (257)
.
T Consensus 178 ~ 178 (287)
T PRK09563 178 W 178 (287)
T ss_pred C
Confidence 3
No 332
>KOG3886|consensus
Probab=98.47 E-value=2.4e-07 Score=73.97 Aligned_cols=86 Identities=16% Similarity=0.275 Sum_probs=64.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|.++|.+|+|||++=..+.....+. ..+-.|-|++.....+.|.+. ..+++||+.|++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~-------------D~~rlg~tidveHsh~RflGn-----l~LnlwDcGgqe 64 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIAR-------------DTRRLGATIDVEHSHVRFLGN-----LVLNLWDCGGQE 64 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhh-------------hhhccCCcceeeehhhhhhhh-----heeehhccCCcH
Confidence 34689999999999999877765322111 122356788877777777652 578999999999
Q ss_pred ccHHHHHH-----hhhhcceEEEEEecCc
Q psy12244 107 DFSNEVTR-----SLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~~~~~~~~-----~~~~aD~~ilVvd~~~ 130 (257)
.|+++... .++..+++++|+|+..
T Consensus 65 ~fmen~~~~q~d~iF~nV~vli~vFDves 93 (295)
T KOG3886|consen 65 EFMENYLSSQEDNIFRNVQVLIYVFDVES 93 (295)
T ss_pred HHHHHHHhhcchhhheeheeeeeeeeccc
Confidence 88777655 4678899999999987
No 333
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=1.1e-07 Score=83.06 Aligned_cols=61 Identities=64% Similarity=0.925 Sum_probs=53.1
Q ss_pred cchhhhcceeeEeeecccchhhHHHHHHhhCCccc-CCCccccCChhhHhhhCceEeeeeee
Q psy12244 196 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 196 ~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~-~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
++..++|+++++.|++.||+|+.|+++..+|.+.. .-..+++|.+++|+||||||++....
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~ 65 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVR 65 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEE
Confidence 34567899999999999999999999999998753 34488999999999999999998764
No 334
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=1.7e-07 Score=80.60 Aligned_cols=57 Identities=32% Similarity=0.335 Sum_probs=40.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++.++|.+|+|||||+|+|++...+.+. ..+|+|...+.... . ..+.++||||..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-------------~~PG~Tk~~q~i~~--~-------~~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTS-------------NRPGTTKGIQWIKL--D-------DGIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeC-------------CCCceecceEEEEc--C-------CCeEEecCCCcC
Confidence 356999999999999999999886664432 24577665332222 1 348899999964
No 335
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.44 E-value=2.5e-07 Score=78.06 Aligned_cols=57 Identities=32% Similarity=0.361 Sum_probs=38.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+..+++++|.+|+|||||+|+|+....... ...+|.|.... .+... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-------------~~~~g~T~~~~--~~~~~-------~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-------------GNRPGVTKGQQ--WIKLS-------DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-------------CCCCCeecceE--EEEeC-------CCEEEEECCCc
Confidence 346799999999999999999975432221 12345565432 22221 25789999998
No 336
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.42 E-value=8.3e-07 Score=72.51 Aligned_cols=90 Identities=20% Similarity=0.157 Sum_probs=51.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+...|+|+|++++|||+|+|+|++...... ..+. ....|...-.....+. .+....+.++||||.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~------~~~~-----~~~~T~gi~~~~~~~~---~~~~~~v~~lDteG~ 70 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD------VMDT-----SQQTTKGIWMWSVPFK---LGKEHAVLLLDTEGT 70 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE------ecCC-----CCCCccceEEEecccc---CCCcceEEEEecCCc
Confidence 4567899999999999999999987521110 0000 0111111111111110 113368999999998
Q ss_pred ccc------HHHHHHhhhh--cceEEEEEecC
Q psy12244 106 VDF------SNEVTRSLAA--CQGVVLLIDAN 129 (257)
Q Consensus 106 ~~~------~~~~~~~~~~--aD~~ilVvd~~ 129 (257)
.+. ......++.. +|++|+.++..
T Consensus 71 ~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 71 DGRERGEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred CccccCchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 653 2233445555 89888887665
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=98.42 E-value=1.9e-07 Score=80.96 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++++|.+|+|||||+|+|+....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 479999999999999999986443
No 338
>KOG3883|consensus
Probab=98.40 E-value=9.5e-07 Score=66.00 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=59.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEe-ceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK-AQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.+.-+|++||.-++|||+++.+|++-...+..+. ..|+. .....++.. .+....+.|.||.|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~--------------~pTiEDiY~~svet~---rgarE~l~lyDTaG 69 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL--------------HPTIEDIYVASVETD---RGAREQLRLYDTAG 69 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCcc--------------ccchhhheeEeeecC---CChhheEEEeeccc
Confidence 4556799999999999999999987554433221 11211 112222222 23345788999999
Q ss_pred CcccHHHHH-HhhhhcceEEEEEecCc
Q psy12244 105 HVDFSNEVT-RSLAACQGVVLLIDANQ 130 (257)
Q Consensus 105 ~~~~~~~~~-~~~~~aD~~ilVvd~~~ 130 (257)
...+..+.. -+++-+|+.+||++..+
T Consensus 70 lq~~~~eLprhy~q~aDafVLVYs~~d 96 (198)
T KOG3883|consen 70 LQGGQQELPRHYFQFADAFVLVYSPMD 96 (198)
T ss_pred ccCchhhhhHhHhccCceEEEEecCCC
Confidence 998844444 45678999999999987
No 339
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.40 E-value=1e-06 Score=76.36 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=58.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC-ccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------cCCccEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG-TVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------LDGEEYL 96 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~-~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------~~~~~~~ 96 (257)
.+++|+|.+|+|||||+|+|+.... ..... +-.|+.+....+.+.+. .......
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y--------------pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~ 68 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP--------------PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTT 68 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC--------------CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCce
Confidence 5799999999999999999976443 22111 11233333433333220 0011246
Q ss_pred EEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 97 LNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 97 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+.++|.||... +.......++.+|+++.|+++..
T Consensus 69 i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 69 TEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred EEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 88999999754 44566778899999999999975
No 340
>KOG1547|consensus
Probab=98.40 E-value=3.1e-06 Score=68.09 Aligned_cols=69 Identities=29% Similarity=0.332 Sum_probs=40.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhh-CceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQER-GITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~-g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.||.+||.+|.|||||+|.|......-... +....+.-+ .+.+...+..+.- .+...++++|||||+.|
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~------~~~~~~p~pkT~eik~~thvieE----~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSS------SDNSAEPIPKTTEIKSITHVIEE----KGVKLKLTVIDTPGFGD 116 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccC------CCcccCcccceEEEEeeeeeeee----cceEEEEEEecCCCccc
Confidence 689999999999999999997533211110 111111111 1122222222221 34456899999999877
No 341
>KOG4423|consensus
Probab=98.39 E-value=1.1e-08 Score=78.70 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=89.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+.++.|+|.-++|||+++.+.+..... ......+..+.....+.|+. .....+.|||.+|+
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs--------------~~yRAtIgvdfalkVl~wdd---~t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFS--------------YHYRATIGVDFALKVLQWDD---KTIVRLQLWDIAGQ 85 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHH--------------HHHHHHHhHHHHHHHhccCh---HHHHHHHHhcchhh
Confidence 34678999999999999999998764321 11111222233333344442 23356789999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCCHHHHHHHHHHHh-C
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNANPEACEEQLQTLF-N 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~~~~~~~~~~~~~-~ 150 (257)
++|..++.-+++.+.++.+|+|.+. +|....-..+.-.++.++. .
T Consensus 86 erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ke 165 (229)
T KOG4423|consen 86 ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKE 165 (229)
T ss_pred hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhc
Confidence 9999888889999999999999988 3432221112122333322 1
Q ss_pred CCccceEEecccccccccccccccCCCc
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDSTN 178 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~~~ 178 (257)
.....++++|+|...|+++..+.+.+..
T Consensus 166 ngf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 166 NGFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred cCccceeeeccccccChhHHHHHHHHHH
Confidence 2223589999999999998877776443
No 342
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.39 E-value=6.6e-07 Score=75.44 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=40.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|.++|.+|+|||||+|.|+......... ..+.......... ........... ++....+++|||||+.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~----~~~~~~~~~~~~~--~i~~~~~~l~e--~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS----SIPPPSASISRTL--EIEERTVELEE--NGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS-------------S------SCE--EEEEEEEEEEE--TCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc----ccccccccccccc--ceeeEEEEecc--CCcceEEEEEeCCCccc
Confidence 4689999999999999999998743322110 0000011112222 23333444444 56678999999999875
No 343
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=4.7e-06 Score=74.58 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=71.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhC-ceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERG-ITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g-~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.-|+++|++|.|||||+..|+.+-... ....-+| +|+- .++...++|+.||
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~------------ti~~i~GPiTvv------------sgK~RRiTflEcp-- 121 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQ------------TIDEIRGPITVV------------SGKTRRITFLECP-- 121 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHh------------hhhccCCceEEe------------ecceeEEEEEeCh--
Confidence 45567899999999999999987532110 0011111 2221 3455889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~~~ 153 (257)
+-...++..+..||+++|++|++- +|+.... +....+.+...+ -+.+
T Consensus 122 -~Dl~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 122 -SDLHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred -HHHHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCC
Confidence 334567778889999999999997 6664321 344444444333 2345
Q ss_pred cceEEeccccc
Q psy12244 154 KSVLRIWHRRC 164 (257)
Q Consensus 154 ~~~i~iSa~~g 164 (257)
+.+|.+|....
T Consensus 201 aKlFylsgV~n 211 (1077)
T COG5192 201 AKLFYLSGVEN 211 (1077)
T ss_pred ceEEEeccccc
Confidence 56888887653
No 344
>KOG0467|consensus
Probab=98.36 E-value=2.9e-07 Score=84.52 Aligned_cols=58 Identities=47% Similarity=0.724 Sum_probs=53.9
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+|+++++.||+.||+++.|.++..+|.+++ +|+.+.+|+.++|+.|||||+++.++
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is 66 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAIS 66 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccc
Confidence 45789999999999999999999999998876 78899999999999999999999886
No 345
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.36 E-value=7.1e-07 Score=69.82 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++++++|.+|+|||||+|+|+..
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999753
No 346
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=3.8e-07 Score=78.80 Aligned_cols=57 Identities=40% Similarity=0.555 Sum_probs=50.6
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+++++|||++||+|++.+++|..|.+.. .|+ .|++|..++|++||+||+.+.++|
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f 80 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF 80 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe
Confidence 357899999999999999999999998854 444 789999999999999999998875
No 347
>KOG0096|consensus
Probab=98.35 E-value=8.3e-07 Score=68.66 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=83.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+++++|..+.||+|++++.+. +.. |.....|+........+.. +....++..|||+|++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~lt--geF--------------e~~y~at~Gv~~~pl~f~t--n~g~irf~~wdtagqE 70 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLT--GEF--------------EKTYPATLGVEVHPLLFDT--NRGQIRFNVWDTAGQE 70 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhc--ccc--------------eecccCcceeEEeeeeeec--ccCcEEEEeeecccce
Confidence 467899999999999999999743 221 2223334444444444443 3335899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC--H--HHHHHHHHHHhCCCccceEEec
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN--P--EACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~--~--~~~~~~~~~~~~~~~~~~i~iS 160 (257)
.+......++-.+.++++++|... |-+++.. . ......--.+....++.++++|
T Consensus 71 k~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iS 150 (216)
T KOG0096|consen 71 KKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEIS 150 (216)
T ss_pred eecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEee
Confidence 988777777777889999999986 0011100 0 0000000011112234689999
Q ss_pred ccccccccccccccC
Q psy12244 161 HRRCFSCADCHRSLD 175 (257)
Q Consensus 161 a~~g~gi~~l~~~i~ 175 (257)
|++..|.+.-|-++.
T Consensus 151 aksn~NfekPFl~La 165 (216)
T KOG0096|consen 151 AKSNYNFERPFLWLA 165 (216)
T ss_pred cccccccccchHHHh
Confidence 999999998887776
No 348
>KOG1491|consensus
Probab=98.33 E-value=2.9e-06 Score=71.55 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=61.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------cCCccE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------LDGEEY 95 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------~~~~~~ 95 (257)
..++++|||.+|+||||++|+|+...-...+ -+--|+++..+++...+. ......
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~N--------------fPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa 84 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAAN--------------FPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPA 84 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccC--------------CCcceeccccceeecCchHHHHHHHhcCCcceeee
Confidence 4568999999999999999999764332211 122355555544433210 012346
Q ss_pred EEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+++.|.+|... +-...++.++.+|+++-||++..
T Consensus 85 ~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 85 FLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 899999999765 44556788999999999999887
No 349
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=4.6e-07 Score=78.61 Aligned_cols=60 Identities=37% Similarity=0.670 Sum_probs=52.4
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
+.+.|.++++.|.+.||+|+.+.++...|.|..+|. ..+.||+++|++|||||.+|+-.|
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF 76 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQF 76 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEe
Confidence 345588999999999999999999999998876665 558999999999999999998654
No 350
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=7.1e-07 Score=73.90 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++++|++|+|||||+|+|+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468999999999999999998643
No 351
>KOG0464|consensus
Probab=98.29 E-value=7.1e-07 Score=76.97 Aligned_cols=61 Identities=44% Similarity=0.768 Sum_probs=55.2
Q ss_pred chhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 197 ~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
++.+.|++.++.|++.||++..++++|..|.+..+|. .++.|++.+|+||||||.++...|
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~f 97 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNF 97 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeec
Confidence 4567899999999999999999999999999988777 779999999999999999987654
No 352
>PRK12289 GTPase RsgA; Reviewed
Probab=98.29 E-value=6.3e-07 Score=77.77 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++++|++|+|||||+|+|+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 47999999999999999997543
No 353
>KOG0469|consensus
Probab=98.28 E-value=6.9e-07 Score=78.73 Aligned_cols=58 Identities=52% Similarity=0.787 Sum_probs=53.2
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcc--cCCCccccCChhhHhhhCceEeeeeeeC
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~--~~g~~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+|+..++.||+.||+|+.|+++.+.|.+. ++|..+..|..+.|++|||||+++.+|+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl 77 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISL 77 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeee
Confidence 368899999999999999999999999886 4677999999999999999999999885
No 354
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=6e-07 Score=75.16 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.7
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+..+++|++|+|||||+|+|..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 3678999999999999999964
No 355
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.27 E-value=2.6e-06 Score=70.92 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=79.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCcccc--------C-----CCcccccchHHHhh---hCceEeceeeEEEeec-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--------S-----GSSQVLDSLQVEQE---RGITVKAQTASLRYTS- 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~--------~-----~~~~~~d~~~~e~~---~g~t~~~~~~~~~~~~- 88 (257)
.+.+.|+|.|.+|+|||||+.+|......-.. + .++..-|+.+..+. +++-+.+....=...+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 45678999999999999999998643211100 0 34444454443322 1222211111100000
Q ss_pred ---------ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC
Q psy12244 89 ---------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN 137 (257)
Q Consensus 89 ---------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~ 137 (257)
.|+--.+.+.||.|-|..+-... -...+|.+++|.-+.. .|+.+
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~~~-- 203 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADRKG-- 203 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccChhh--
Confidence 02233577888888887653322 2345677666653333 33222
Q ss_pred HHHHHHHHHHHhCC---------CccceEEecccccccccccccccCC
Q psy12244 138 PEACEEQLQTLFNI---------DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 ~~~~~~~~~~~~~~---------~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+....+++..+.. -..|++.+||.+|+|+++|++.+..
T Consensus 204 A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 204 AEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED 251 (323)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence 22223333322211 1236899999999999999998874
No 356
>KOG1707|consensus
Probab=98.26 E-value=2.7e-06 Score=76.34 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=78.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..|+|||||+-+|+...-...-+ .+-.-+++-.. + ........++||+.-.
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP-----------~rl~~i~IPad---v------tPe~vpt~ivD~ss~~ 67 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP-----------RRLPRILIPAD---V------TPENVPTSIVDTSSDS 67 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhcccccc-----------ccCCccccCCc---c------CcCcCceEEEeccccc
Confidence 45679999999999999999997643211000 00111232211 1 1111347799999777
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCH---HH-HHHHHHHHh
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANP---EA-CEEQLQTLF 149 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~---~~-~~~~~~~~~ 149 (257)
+-.......++.||++++|++.++ +|...... +. +.-.+.++-
T Consensus 68 ~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~ 147 (625)
T KOG1707|consen 68 DDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA 147 (625)
T ss_pred chhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH
Confidence 666666778999999999998887 44432221 11 222222221
Q ss_pred CCCccceEEecccccccccccccccCC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
... -.|++||++-.|+.++|-+-.+
T Consensus 148 EiE--tciecSA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 148 EIE--TCIECSALTLANVSELFYYAQK 172 (625)
T ss_pred HHH--HHHhhhhhhhhhhHhhhhhhhh
Confidence 222 2589999999999998866654
No 357
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.22 E-value=1.3e-06 Score=76.49 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=40.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+++++|.+|+|||||+|+|+....... +.......+|.|.+.. .+.+. ..+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~--------~~~~~s~~pgtT~~~~--~~~~~-------~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK--------DVITTSPFPGTTLDLI--EIPLD-------DGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc--------ceeeecCCCCeEeeEE--EEEeC-------CCCEEEECCCCCC
Confidence 4799999999999999999987533110 0111233466676543 22221 1356999999864
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.22 E-value=1.9e-06 Score=66.22 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...+++++|.+|+|||||+|+|.+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999964
No 359
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.21 E-value=8.3e-07 Score=84.55 Aligned_cols=58 Identities=50% Similarity=0.721 Sum_probs=51.2
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.|+++++||+++||+|+.+++++..|.+.+ .|..+++|+.++|++||+||+++.++
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~ 77 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVS 77 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceE
Confidence 45789999999999999999999999998764 34567899999999999999998764
No 360
>PRK13796 GTPase YqeH; Provisional
Probab=98.17 E-value=1.5e-06 Score=76.11 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=38.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.++.++|.+|+|||||+|+|+...... .+.......+|.|.+.. .+.+.. ...++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~--------~~~~~~s~~pGTT~~~~--~~~l~~-------~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE--------KDVITTSRFPGTTLDKI--EIPLDD-------GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc--------cceEEecCCCCccceeE--EEEcCC-------CcEEEECCCcc
Confidence 478999999999999999998643110 01111234566676532 222221 24699999985
No 361
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.15 E-value=1.6e-06 Score=83.77 Aligned_cols=58 Identities=48% Similarity=0.720 Sum_probs=50.6
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.++|+++++||+++||+|+.+++++.+|.+.. .|..+++|..++|++||+||+++.++
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~ 76 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGIS 76 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeE
Confidence 45789999999999999999999999997765 34466799999999999999988765
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.12 E-value=1.5e-06 Score=73.37 Aligned_cols=113 Identities=22% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCcc-cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 103 PGHVD-FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 103 pG~~~-~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
|||.. ...++...+..+|++++|+|+.. +|+.+. ... +...+.+.....+++
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~--~~~-~~~~~~~~~~~~~vi 81 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADP--AVT-KQWLKYFEEKGIKAL 81 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCH--HHH-HHHHHHHHHcCCeEE
Confidence 78754 56677788899999999999975 665321 111 111112211124689
Q ss_pred EecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 158 RIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
++||+++.|+++|.+.+..... ... ....... . ......+.++|..+.||+++.+++....
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~-~~~--~~~~~~~---~-~~~~~~~~~vG~~nvGKSslin~l~~~~ 142 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLK-EKN--EKLKAKG---L-KNRPIRAMIVGIPNVGKSTLINRLAGKK 142 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHH-Hhh--hhhhhcc---C-CCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 9999999999998887763211 000 0000000 0 1123458889999999999999997543
No 363
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.11 E-value=3.6e-06 Score=73.65 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=74.6
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCC--HHHHHHHHH---HHhCCCccce
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNAN--PEACEEQLQ---TLFNIDKKSV 156 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~--~~~~~~~~~---~~~~~~~~~~ 156 (257)
++|..........++++++|+|+.+ +|+.... .++..+.++ +.+++....+
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 3455555555566777777777765 7764322 233333332 2234433358
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhC-----CcccC
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTG-----TVLSS 231 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g-----~~~~~ 231 (257)
+++||++|.|++++++.|.... . .+.+.++|..+.||+|+.+.++...+ ...+.
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~--~-------------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~ 189 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKAR--N-------------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSP 189 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHh--C-------------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecC
Confidence 9999999999999998886220 0 14688999999999999999988543 12223
Q ss_pred CCccccCChhhHh
Q psy12244 232 GSSQVLDSLQVEQ 244 (257)
Q Consensus 232 g~~~~~d~~~~e~ 244 (257)
.++++++....+.
T Consensus 190 ~pgtT~~~~~~~~ 202 (360)
T TIGR03597 190 FPGTTLDLIEIPL 202 (360)
T ss_pred CCCeEeeEEEEEe
Confidence 3455655544443
No 364
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.10 E-value=3e-05 Score=66.59 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+++|++|+||||++..|...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999998654
No 365
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.09 E-value=2.8e-06 Score=77.72 Aligned_cols=58 Identities=29% Similarity=0.599 Sum_probs=50.4
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.|+++++||+++||+|+.+++++..|.+.+.|. .++.|+.++|++||+||.++...
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~ 74 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQ 74 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEE
Confidence 45689999999999999999999999998766543 37899999999999999988764
No 366
>PTZ00416 elongation factor 2; Provisional
Probab=98.09 E-value=2.2e-06 Score=82.63 Aligned_cols=58 Identities=52% Similarity=0.735 Sum_probs=50.1
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.|+++++||+++||+|+.+++++..|.+.+ .|..+++|+.++|++||+||.++.++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~ 76 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGIS 76 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceE
Confidence 44689999999999999999999999997754 34456799999999999999988654
No 367
>KOG2655|consensus
Probab=98.09 E-value=8.3e-06 Score=70.06 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=43.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..++.++|..|.|||||+|.|+.....- .. ........... |............ ++....++++||||+.+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~-~~----~~~~~~~~~~~--t~~i~~~~~~iee--~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSG-NR----EVPGASERIKE--TVEIESTKVEIEE--NGVKLNLTVIDTPGFGD 91 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccC-Cc----ccCCcccCccc--cceeeeeeeeecC--CCeEEeeEEeccCCCcc
Confidence 4789999999999999999998752111 00 00111111111 3333333344443 56667899999999987
No 368
>KOG1487|consensus
Probab=98.07 E-value=2.9e-06 Score=69.03 Aligned_cols=82 Identities=21% Similarity=0.346 Sum_probs=58.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
.++.++|-+.+|||||+..|.+........ .+.|.........|++ .++.+.|.||..+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasy--------------efttl~~vpG~~~y~g------aKiqlldlpgiieg 119 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAY--------------EFTTLTTVPGVIRYKG------AKIQLLDLPGIIEG 119 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccc--------------cceeEEEecceEeccc------cceeeecCcchhcc
Confidence 468999999999999999996644332221 1233333344455665 7899999999754
Q ss_pred ------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
--++.+..++.++++++|+|+..
T Consensus 120 akdgkgrg~qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 120 AKDGKGRGKQVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred cccCCCCccEEEEEeecccEEEEEeeccC
Confidence 23445566788999999999987
No 369
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.06 E-value=3.9e-06 Score=71.15 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++++|++|+|||||+|.|+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 579999999999999999997643
No 370
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.06 E-value=3.1e-06 Score=78.66 Aligned_cols=58 Identities=66% Similarity=0.964 Sum_probs=50.4
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCC-CccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g-~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
...|+++++||+++||+|+.+++++..|.+...+ ..+++|.+++|++||+||+++.++
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~ 63 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVR 63 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEE
Confidence 4578999999999999999999999999876533 378999999999999999986653
No 371
>PRK00007 elongation factor G; Reviewed
Probab=98.06 E-value=3.8e-06 Score=79.59 Aligned_cols=59 Identities=39% Similarity=0.647 Sum_probs=51.4
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..++|+++++||+++||+|+.+++++..|.+.+.|. .+++|+.++|++||+||+++..+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~ 69 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATT 69 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEE
Confidence 456799999999999999999999999997755433 67999999999999999987665
No 372
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.05 E-value=2.3e-06 Score=66.97 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=70.5
Q ss_pred CCCCc-ccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 102 TPGHV-DFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 102 tpG~~-~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
-|||- +...++...+..||++++|+|+.. +|+... +.. ....+.+.....++
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~--~~~-~~~~~~~~~~~~~v 78 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADP--KKT-KKWLKYFESKGEKV 78 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCCh--HHH-HHHHHHHHhcCCeE
Confidence 36664 466677788899999999999975 555321 111 11212222122358
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhC
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
+++||+++.|+++|.+.+...-. . .. +.... . .......+.++|..+.||+++...+.....
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~-~-~~-~~~~~-~----~~~~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLK-D-IE-KLKAK-G----LLPRGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHH-H-Hh-hhhhc-c----cCCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 99999999999999887763210 0 00 00000 0 011124678999999999999999986443
No 373
>PRK12739 elongation factor G; Reviewed
Probab=98.05 E-value=3.2e-06 Score=80.13 Aligned_cols=60 Identities=37% Similarity=0.632 Sum_probs=51.5
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+.|+++++||+++||+|+.+++++..|.+.+.|. .+++|+.++|++||+||.++..++
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~ 68 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTC 68 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEE
Confidence 456799999999999999999999999887655432 679999999999999999987653
No 374
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.04 E-value=4e-06 Score=69.42 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=38.9
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
.+++++||++|.|++++++.+.. ...+++|..+.||+++.+.++..
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~-------------------------~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN-------------------------RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC-------------------------CEEEEECCCCCCHHHHHHHHhhh
Confidence 56999999999999999886651 23678999999999999999764
No 375
>KOG1424|consensus
Probab=98.03 E-value=3.8e-06 Score=74.37 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=40.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+|++||.+||||||+||+|.+....- ....+|.|--+++..+. -.+-|.||||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-------------VS~TPGkTKHFQTi~ls---------~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-------------VSSTPGKTKHFQTIFLS---------PSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-------------eecCCCCcceeEEEEcC---------CCceecCCCCcc
Confidence 4789999999999999999998755432 23355666544433332 357799999965
No 376
>PRK00098 GTPase RsgA; Reviewed
Probab=98.02 E-value=4.8e-06 Score=70.99 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++++|++|+|||||+|+|+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999997643
No 377
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.02 E-value=4.6e-06 Score=75.54 Aligned_cols=56 Identities=38% Similarity=0.541 Sum_probs=48.1
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-------ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..|.+.+ .|. .|++|..++|++||+||..+...
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 367999999999999999999999998764 333 35899999999999999988654
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.02 E-value=2.9e-05 Score=65.26 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+++.|+++|++|+||||++..|..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4567899999999999999998864
No 379
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.02 E-value=4.8e-06 Score=64.14 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=45.2
Q ss_pred eEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCcc
Q psy12244 156 VLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ 235 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~ 235 (257)
++++||++|.|+++|.+.+.... +.. . . .....+.++|..+.||+|+.++++.........-+++
T Consensus 72 ~~~iSa~~~~~~~~L~~~l~~~~--~~~--~---~--------~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~ 136 (157)
T cd01858 72 AFHASINNPFGKGSLIQLLRQFS--KLH--S---D--------KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE 136 (157)
T ss_pred EEEeeccccccHHHHHHHHHHHH--hhh--c---c--------ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe
Confidence 58999999999999888886321 100 0 0 0123577899999999999999987554333333344
Q ss_pred ccC
Q psy12244 236 VLD 238 (257)
Q Consensus 236 ~~d 238 (257)
+.+
T Consensus 137 T~~ 139 (157)
T cd01858 137 TKV 139 (157)
T ss_pred eEe
Confidence 433
No 380
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.02 E-value=4.5e-06 Score=79.14 Aligned_cols=59 Identities=37% Similarity=0.653 Sum_probs=51.4
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..++|+++++||+++||+|+.+++++..|.+.+.+. .+++|+.+.|++||+||.++..+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~ 69 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATT 69 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEE
Confidence 456799999999999999999999999998755443 48999999999999999987654
No 381
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.02 E-value=4.8e-06 Score=76.20 Aligned_cols=58 Identities=36% Similarity=0.654 Sum_probs=50.1
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.|+++++||+++||+|+.+++++..|.+.+.|. .++.|+.++|++||+||.++...
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~ 73 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQ 73 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEE
Confidence 45689999999999999999999999998866554 24689999999999999998754
No 382
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.99 E-value=4.8e-06 Score=74.83 Aligned_cols=57 Identities=37% Similarity=0.471 Sum_probs=48.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccCC------------C-----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG------------S-----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g------------~-----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+++++||+++||+|+.+++++..|.+.+.+ . .+++|..++|++||+||..+...|
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~ 80 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF 80 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence 36799999999999999999999999765422 0 468999999999999999987654
No 383
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.98 E-value=1.9e-06 Score=73.05 Aligned_cols=114 Identities=23% Similarity=0.240 Sum_probs=70.4
Q ss_pred CCCCcc-cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 102 TPGHVD-FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 102 tpG~~~-~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
-|||.. -..+....+..+|++|+|+|+.. +|+.+. .. .+...+.+.....++
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~--~~-~~~~~~~~~~~~~~v 83 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADP--EV-TKKWIEYFEEQGIKA 83 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCH--HH-HHHHHHHHHHcCCeE
Confidence 378754 45567778899999999999976 555321 11 122222221112468
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++||+++.|+++|.+.+..... .. . ....... .......+.++|..+.||+++.+++....
T Consensus 84 i~vSa~~~~gi~~L~~~l~~~l~-~~-~-~~~~~~~----~~~~~~~~~~~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 84 LAINAKKGQGVKKILKAAKKLLK-EK-N-ERRKAKG----MRPRAIRAMIIGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred EEEECCCcccHHHHHHHHHHHHH-HH-H-hhhhhcc----cCcCceEEEEECCCCCCHHHHHHHHhcCC
Confidence 99999999999998887763211 00 0 0000000 01123468899999999999999997644
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=97.97 E-value=2.6e-05 Score=67.30 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++..|+++|.+|+||||++..|..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999998888764
No 385
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.96 E-value=7.2e-06 Score=71.89 Aligned_cols=53 Identities=55% Similarity=0.800 Sum_probs=46.6
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcccCCC--ccccCChhhHhhhCceEee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--SQVLDSLQVEQERGITVKA 252 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--~~~~d~~~~e~~rg~ti~~ 252 (257)
..|+++++.||+.||+|+.|+++...|+...... .+++|....|+||||||-+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILa 58 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILA 58 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEe
Confidence 4689999999999999999999999998754333 6799999999999999954
No 386
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.95 E-value=1.3e-05 Score=61.62 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=52.4
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS 233 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~ 233 (257)
.+++++||++|.|+++|.+.+...- .... ...... . .......++++|..+.||+++.+.++.........+.
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~~~-~~~~-~~~~~~-~----~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~ 132 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTKQT-NSNL-KSYAKD-G----KLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP 132 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHHHh-HHHH-HHHHhc-c----ccccCcEEEEEccCCCCHHHHHHHHHccccccccCCC
Confidence 4589999999999999998876320 0000 000000 0 0112356889999999999999999876554444555
Q ss_pred ccccCChhhH
Q psy12244 234 SQVLDSLQVE 243 (257)
Q Consensus 234 ~~~~d~~~~e 243 (257)
+++.+.....
T Consensus 133 ~~t~~~~~~~ 142 (155)
T cd01849 133 GTTTSQQEVK 142 (155)
T ss_pred CcccceEEEE
Confidence 6666654433
No 387
>KOG2485|consensus
Probab=97.92 E-value=1.3e-05 Score=67.03 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=42.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+++.++|-||+|||||+|++......... ......++|+|+........... ..+.++||||.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k--------~a~vG~~pGVT~~V~~~iri~~r------p~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKK--------AARVGAEPGVTRRVSERIRISHR------PPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhcc--------ceeccCCCCceeeehhheEeccC------CceEEecCCCc
Confidence 4578999999999999999998543322211 11123467888876553322222 35889999995
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=97.88 E-value=2.3e-05 Score=68.74 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=54.6
Q ss_pred hCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh-C-
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT-G- 226 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~-g- 226 (257)
++....+++++||++|.|++++++.|.... . .+.+.++|..+.||+|+.++++... |
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~--~-------------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~ 187 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR--E-------------------GRDVYVVGVTNVGKSTLINRIIKEITGE 187 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhc--C-------------------CCeEEEEcCCCCcHHHHHHHHHhhccCc
Confidence 354434689999999999999998886320 0 1357889999999999999998643 1
Q ss_pred ---CcccCCCccccCChhhHhhhC
Q psy12244 227 ---TVLSSGSSQVLDSLQVEQERG 247 (257)
Q Consensus 227 ---~~~~~g~~~~~d~~~~e~~rg 247 (257)
......++++++........|
T Consensus 188 ~~~~~~s~~pGTT~~~~~~~l~~~ 211 (365)
T PRK13796 188 KDVITTSRFPGTTLDKIEIPLDDG 211 (365)
T ss_pred cceEEecCCCCccceeEEEEcCCC
Confidence 123455677777665544444
No 389
>KOG0465|consensus
Probab=97.87 E-value=5.5e-06 Score=74.69 Aligned_cols=62 Identities=40% Similarity=0.754 Sum_probs=54.8
Q ss_pred cchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 196 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 196 ~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+..+.|++.+..|+++||+++.+++++..|.+...+. ++++|+++.|++|||||.++.+++
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~ 99 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYF 99 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeee
Confidence 44567899999999999999999999999998766544 779999999999999999998764
No 390
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.84 E-value=6.6e-05 Score=66.64 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++..|+++|.+|+||||++..|..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 391
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.83 E-value=0.0003 Score=60.55 Aligned_cols=69 Identities=7% Similarity=0.210 Sum_probs=50.1
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCccCCCC------CCHHHHHHHHHHHhC---CCccceEEecccc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKN------ANPEACEEQLQTLFN---IDKKSVLRIWHRR 163 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D~~~------~~~~~~~~~~~~~~~---~~~~~~i~iSa~~ 163 (257)
..+.+||++|+....+.|...+..++++++|+|.++-|..- ..+.+.++.+...+. +...|++.+-.|.
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 67889999999999999999999999999999999855421 124555555555443 2345666665554
No 392
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.81 E-value=2.6e-05 Score=62.32 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
|+.|+++|++|+||||.+-+|....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999999986544
No 393
>KOG1954|consensus
Probab=97.81 E-value=6.7e-05 Score=64.20 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=58.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc--CccccC-----CCcccccchHHHhhhCceEeceeeEEEeec--------------
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT--GTVLSS-----GSSQVLDSLQVEQERGITVKAQTASLRYTS-------------- 88 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~--~~~~~~-----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------------- 88 (257)
-|.++|+-..||||+++.|+... +.-... .+..++....++.-+|.+.-.... ..+.+
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~-~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAK-KPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCC-CchhhhhhhHHHHHHHHHH
Confidence 48999999999999999997522 111111 111112222222222322211100 00100
Q ss_pred --ccCCccEEEEEeCCCCCc-----------ccHHHHHHhhhhcceEEEEEecCccCC
Q psy12244 89 --ILDGEEYLLNLIDTPGHV-----------DFSNEVTRSLAACQGVVLLIDANQVDL 133 (257)
Q Consensus 89 --~~~~~~~~~~liDtpG~~-----------~~~~~~~~~~~~aD~~ilVvd~~~~D~ 133 (257)
.+...-.++++|||||.- +|.....-.+..+|.++|++|+...|.
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI 196 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI 196 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc
Confidence 001112479999999963 366666667788999999999998555
No 394
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.80 E-value=1.4e-05 Score=71.60 Aligned_cols=56 Identities=45% Similarity=0.669 Sum_probs=47.9
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-----ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..|.+... |. .+++|..++|++||+|+..+...
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~ 78 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK 78 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE
Confidence 3679999999999999999999999987542 33 46899999999999999987654
No 395
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.78 E-value=3.1e-05 Score=59.47 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=41.0
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
.+++++||++|.|+++|++.+.... + . . .....+.++|..+.||+++..++..
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~-----~--~--~--------~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELA-----K--I--D--------GKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHH-----h--h--c--------CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998887321 1 0 0 1124578999999999999999975
No 396
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.78 E-value=0.00031 Score=61.09 Aligned_cols=68 Identities=7% Similarity=0.223 Sum_probs=49.4
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCccCCC------CCCHHHHHHHHHHHhC---CCccceEEeccc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLK------NANPEACEEQLQTLFN---IDKKSVLRIWHR 162 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D~~------~~~~~~~~~~~~~~~~---~~~~~~i~iSa~ 162 (257)
..+.+||.+|+..+++.|...+..++++++|+|.++-|.. .....+..+.+...++ +...|++.+-.|
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK 260 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK 260 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence 6788999999999999999999999999999999985432 1124555555655553 233466555544
No 397
>KOG0448|consensus
Probab=97.75 E-value=0.00021 Score=65.58 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=59.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------CC---cccccchHHH------hhhC--c-----eE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------GS---SQVLDSLQVE------QERG--I-----TV 77 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------~~---~~~~d~~~~e------~~~g--~-----t~ 77 (257)
...+|+|.|++++||||++|+++......... ++ ....+...+. .+.+ . .-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 45689999999999999999999865544322 00 0001110000 0000 0 11
Q ss_pred eceeeEEEeecc-cCCccEEEEEeCCCCCcc---cHHHHHHhhhhcceEEEEEecCc
Q psy12244 78 KAQTASLRYTSI-LDGEEYLLNLIDTPGHVD---FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~---~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
......+.|+.. |.--.-.+.++|.||..- +...+......+|++|||+.+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn 244 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN 244 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc
Confidence 122233444431 001112688999999753 44455556678999999999987
No 398
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.73 E-value=2.3e-05 Score=70.53 Aligned_cols=56 Identities=39% Similarity=0.562 Sum_probs=47.5
Q ss_pred cceeeEeeecccchhhHHHHHHhhCCcccC------------CC-----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+++++||+++||+|+.+++++..|.+... |. .+++|..++|++||+||..+..+|
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 579999999999999999999999877642 22 257999999999999999987653
No 399
>PRK12289 GTPase RsgA; Reviewed
Probab=97.70 E-value=7e-05 Score=65.14 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=38.6
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++||++|.|+++|++.+.. ..++++|..+.||+++.+.++...
T Consensus 150 ~~v~~iSA~tg~GI~eL~~~L~~-------------------------ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 150 YQPLFISVETGIGLEALLEQLRN-------------------------KITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred CeEEEEEcCCCCCHHHHhhhhcc-------------------------ceEEEEeCCCCCHHHHHHHHcCcc
Confidence 35899999999999998877751 125789999999999999997543
No 400
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.65 E-value=0.00017 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.7
Q ss_pred ceeeEeeecccchhhHHHHHHhh
Q psy12244 203 NFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 203 ~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+.++|..+.||+++.+++....
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999997543
No 401
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.65 E-value=0.00021 Score=55.07 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999865
No 402
>PRK10218 GTP-binding protein; Provisional
Probab=97.64 E-value=3.3e-05 Score=71.74 Aligned_cols=57 Identities=51% Similarity=0.807 Sum_probs=49.4
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcccCCC--ccccCChhhHhhhCceEeeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
+.|+++++||+++||+++.+++++..|.+.+.+. .+++|+.++|++||+||.+..++
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~ 62 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTA 62 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEE
Confidence 4689999999999999999999998887755432 58999999999999999887654
No 403
>PRK00098 GTPase RsgA; Reviewed
Probab=97.64 E-value=6.8e-05 Score=63.97 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=38.1
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
.+++++||++|.|+++|++.+.. ..++++|..+.||+|+.+.++..
T Consensus 142 ~~v~~vSA~~g~gi~~L~~~l~g-------------------------k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 142 YDVLELSAKEGEGLDELKPLLAG-------------------------KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred CeEEEEeCCCCccHHHHHhhccC-------------------------ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999998876531 23778999999999999998754
No 404
>PRK12288 GTPase RsgA; Reviewed
Probab=97.63 E-value=5.3e-05 Score=65.82 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=39.1
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++||++|.|+++|++.|.. .-.+++|..+.||+|+.+.++...
T Consensus 183 ~~v~~vSA~tg~GideL~~~L~~-------------------------ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 183 YRVLMVSSHTGEGLEELEAALTG-------------------------RISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CeEEEEeCCCCcCHHHHHHHHhh-------------------------CCEEEECCCCCCHHHHHHHhcccc
Confidence 47999999999999999887651 126789999999999999997543
No 405
>KOG0458|consensus
Probab=97.62 E-value=7.4e-05 Score=67.28 Aligned_cols=58 Identities=38% Similarity=0.538 Sum_probs=49.9
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..-..++.|||++||+|+..++++.-|.+.+ .|+ .|++|.-++|++||+||......|
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 3467889999999999999999999998753 344 889999999999999999887654
No 406
>KOG2484|consensus
Probab=97.60 E-value=5.2e-05 Score=65.36 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=40.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+++|+|-+|+||||+||+|.......... .+|+|.... .+... ..+.|+|.||..
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-------------~pGvT~smq--eV~Ld-------k~i~llDsPgiv 308 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-------------VPGVTRSMQ--EVKLD-------KKIRLLDSPGIV 308 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCC-------------Cccchhhhh--heecc-------CCceeccCCcee
Confidence 45679999999999999999998766543322 345554321 22222 478899999975
Q ss_pred c
Q psy12244 107 D 107 (257)
Q Consensus 107 ~ 107 (257)
-
T Consensus 309 ~ 309 (435)
T KOG2484|consen 309 P 309 (435)
T ss_pred e
Confidence 3
No 407
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00038 Score=60.99 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+++.|+++|++|+||||++..|..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457899999999999999999964
No 408
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.57 E-value=5.6e-05 Score=72.08 Aligned_cols=57 Identities=49% Similarity=0.704 Sum_probs=48.9
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..|+++++||+++||+++.+++++..|.+.+ .|..+.+|+.++|++||+||.++..+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~ 76 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVS 76 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccce
Confidence 4689999999999999999999999987754 34456799999999999999987543
No 409
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.56 E-value=6.1e-05 Score=70.88 Aligned_cols=55 Identities=35% Similarity=0.497 Sum_probs=46.6
Q ss_pred cceeeEeeecccchhhHHHHHHhhCCccc------------CCC-------ccccCChhhHhhhCceEeeeeee
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+++++||+++||+|+.+++++..|.+.. .|. .+.+|..++|++||+||..+...
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 45899999999999999999999998762 333 36899999999999999987654
No 410
>PRK13351 elongation factor G; Reviewed
Probab=97.56 E-value=6.9e-05 Score=71.21 Aligned_cols=59 Identities=44% Similarity=0.715 Sum_probs=50.5
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+.++++++||+++||+++.+++++..|.+.+.+. .+..|+.+.|++||+||.++..+
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~ 67 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATS 67 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEE
Confidence 445799999999999999999999999887765543 46899999999999999987654
No 411
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00011 Score=64.11 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...++++|++|+||||++..|...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999754
No 412
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.50 E-value=0.00013 Score=62.01 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=38.7
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++||++|.|+++|++.|.. ..+++.|+.+.||+|+.+.++...
T Consensus 139 ~~v~~vSA~~g~gi~~L~~~L~~-------------------------k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 139 YPVLAVSAKTGEGLDELREYLKG-------------------------KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred CeEEEEECCCCccHHHHHhhhcc-------------------------ceEEEECCCCCCHHHHHHHHhchh
Confidence 46899999999999998776551 247889999999999999987643
No 413
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.50 E-value=9.8e-05 Score=66.24 Aligned_cols=56 Identities=39% Similarity=0.564 Sum_probs=47.2
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..|.+.. .|. .+++|..++|++||+|+..+...
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~ 79 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK 79 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE
Confidence 367999999999999999999999887652 122 46899999999999999987654
No 414
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.0014 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+|.|.|+||+|||||+.++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 46899999999999999999864
No 415
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.41 E-value=0.00045 Score=62.26 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred eeeEEEEecCCCChHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~ 49 (257)
.++|.|+|..++|||||+.+|.
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~ 46 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQ 46 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhh
Confidence 4689999999999999999984
No 416
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.39 E-value=0.00061 Score=53.14 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+++.++|+|.+|+|||||+++|+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 3556799999999999999999975
No 417
>KOG2423|consensus
Probab=97.37 E-value=8.7e-05 Score=64.02 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+...|+++|.+|+||||++|.|.....+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccc
Confidence 34567999999999999999999665443
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.37 E-value=0.00074 Score=52.70 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|++|+||||+...+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888764
No 419
>CHL00071 tufA elongation factor Tu
Probab=97.37 E-value=0.00015 Score=64.68 Aligned_cols=56 Identities=30% Similarity=0.396 Sum_probs=45.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC--CCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~--g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.++++...|.+... .....+|..++|++||+|+.++...
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~ 69 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE 69 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE
Confidence 3679999999999999999999988765321 1134789999999999999987654
No 420
>PLN03126 Elongation factor Tu; Provisional
Probab=97.34 E-value=0.00017 Score=65.30 Aligned_cols=56 Identities=34% Similarity=0.453 Sum_probs=46.1
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccCC--CccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG--SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g--~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..|.+.... ....+|..++|++||+||..+...
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~ 138 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVE 138 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEE
Confidence 46799999999999999999999888664321 235799999999999999887644
No 421
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0014 Score=58.26 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|+.|+||||++..|...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988754
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.28 E-value=0.00031 Score=62.85 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++..|+++|.+|+||||++..|..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4567899999999999999998864
No 423
>PRK00049 elongation factor Tu; Reviewed
Probab=97.24 E-value=0.00035 Score=62.05 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=42.8
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcc--cCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~--~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++...... .....+.+|..++|++||+|++++...
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~ 69 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVE 69 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEE
Confidence 46799999999999999999988532211 111123789999999999999987553
No 424
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.23 E-value=0.00027 Score=62.70 Aligned_cols=56 Identities=29% Similarity=0.440 Sum_probs=42.5
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCc--ccCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~--~~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.++++...... .+....+.+|..++|++||+|+..+...
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~ 69 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE 69 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE
Confidence 4679999999999999999997542211 0111235799999999999999987654
No 425
>PRK12736 elongation factor Tu; Reviewed
Probab=97.22 E-value=0.0003 Score=62.46 Aligned_cols=56 Identities=30% Similarity=0.430 Sum_probs=42.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.++++...+..-+ ....+.+|..++|++||+|++.+...
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~ 69 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVE 69 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeE
Confidence 478999999999999999999864432110 11123699999999999999987654
No 426
>PRK01889 GTPase RsgA; Reviewed
Probab=97.20 E-value=0.00027 Score=61.84 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..++++|.+|+|||||+|.|++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4689999999999999999987544
No 427
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.17 E-value=0.0028 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.+.|++||++||||||.+-.|..+-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 36789999999999999998886543
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0031 Score=55.85 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...++++|++|+||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999975
No 429
>PLN03127 Elongation factor Tu; Provisional
Probab=97.11 E-value=0.00037 Score=62.75 Aligned_cols=55 Identities=31% Similarity=0.467 Sum_probs=41.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhh---CCcccCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMT---GTVLSSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~---g~~~~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++.... |.. .......+|..++|++||+||+.+...
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~-~~~~~~~~D~~~~E~~rGiTi~~~~~~ 118 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKA-KAVAFDEIDKAPEEKARGITIATAHVE 118 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcc-cceeeccccCChhHhhcCceeeeeEEE
Confidence 4679999999999999999996432 211 111122699999999999999987654
No 430
>KOG1534|consensus
Probab=97.10 E-value=0.0012 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=22.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCcccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS 57 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~ 57 (257)
.+.++|+.|+||||..+.+........+
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gR 32 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGR 32 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCc
Confidence 4678999999999999999765544433
No 431
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0003 Score=61.32 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=21.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+...++++|+.|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 432
>PRK12735 elongation factor Tu; Reviewed
Probab=97.07 E-value=0.0005 Score=61.07 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=42.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..+.... ....+.+|..++|++||+|++.+...
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~ 69 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVE 69 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeE
Confidence 367999999999999999999875432111 11134799999999999999986543
No 433
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.05 E-value=0.003 Score=53.00 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+..+++++|++|+||||++..|...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999988653
No 434
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.00 E-value=0.0015 Score=49.82 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=25.5
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
.+.+.||||||... .....+..||.+++|....
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPG 123 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCC
Confidence 47899999999753 3345788899999888655
No 435
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.97 E-value=0.0037 Score=44.28 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=45.5
Q ss_pred EEEEe-cCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 31 FSIIA-HVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 31 i~ivG-~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
|+++| ..|+||||+.-.|...... .|. ....+.. + ..+.+.++|+|+....
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~------------------~~~----~vl~~d~----d-~~~d~viiD~p~~~~~- 53 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR------------------RGK----RVLLIDL----D-PQYDYIIIDTPPSLGL- 53 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh------------------CCC----cEEEEeC----C-CCCCEEEEeCcCCCCH-
Confidence 56777 6799999998887543211 111 0111211 1 1167889999997643
Q ss_pred HHHHHhhhhcceEEEEEecCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.....+..+|.++++++.+.
T Consensus 54 -~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 54 -LTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred -HHHHHHHHCCEEEEeccCCH
Confidence 33477788999999987764
No 436
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.96 E-value=0.002 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.++++|..|+|||||+++|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 437
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.96 E-value=0.0011 Score=59.09 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++..++++|++|+||||++..|...
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34678999999999999998887643
No 438
>PRK10867 signal recognition particle protein; Provisional
Probab=96.95 E-value=0.0014 Score=58.61 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=20.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++..|.++|.+|+||||++..|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3467899999999999998877754
No 439
>PRK01889 GTPase RsgA; Reviewed
Probab=96.92 E-value=0.0015 Score=57.12 Aligned_cols=68 Identities=21% Similarity=0.153 Sum_probs=48.4
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeee
Q psy12244 131 VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHV 210 (257)
Q Consensus 131 ~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v 210 (257)
+|+.+. .+...+.+... ....++|++|+++|.|+++|.+++.. ...++++|..
T Consensus 152 ~DL~~~-~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~~L~~~L~~------------------------g~~~~lvG~s 204 (356)
T PRK01889 152 ADLCED-AEEKIAEVEAL--APGVPVLAVSALDGEGLDVLAAWLSG------------------------GKTVALLGSS 204 (356)
T ss_pred hhcCCC-HHHHHHHHHHh--CCCCcEEEEECCCCccHHHHHHHhhc------------------------CCEEEEECCC
Confidence 777542 23334444443 22457999999999999998876640 1357899999
Q ss_pred cccchhhHHHHHHhh
Q psy12244 211 DHGKSTLADRLLEMT 225 (257)
Q Consensus 211 ~~Gk~~~~~~i~~~~ 225 (257)
+.||+++.+.+....
T Consensus 205 gvGKStLin~L~g~~ 219 (356)
T PRK01889 205 GVGKSTLVNALLGEE 219 (356)
T ss_pred CccHHHHHHHHHHhc
Confidence 999999999987644
No 440
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.88 E-value=0.0011 Score=48.33 Aligned_cols=24 Identities=42% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.|+|.|.+||||||+.+.|....+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999976533
No 441
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.86 E-value=0.0011 Score=42.40 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=18.8
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+|.|+.++|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999853
No 442
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0047 Score=56.26 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+-..|+|+|++|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 443
>PRK08118 topology modulation protein; Reviewed
Probab=96.83 E-value=0.0012 Score=51.48 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++|.|+|++|+|||||...|....+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999776554
No 444
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.00086 Score=55.96 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=41.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCc--ccCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~--~~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..|+..+||++.||+|+..+|....... ..+..-.-.|..++|++|||||+.++..
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahve 69 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVE 69 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeE
Confidence 4688999999999999999985433211 1122233578899999999999998764
No 445
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.82 E-value=0.013 Score=49.63 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.1
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+..+++++.|+|++|.|||+++++|....
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 3455678999999999999999999997643
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.75 E-value=0.001 Score=53.98 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=18.2
Q ss_pred eEEEEecCCCChHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~ 49 (257)
-|+|+|++|||||||+|.+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999883
No 447
>KOG3905|consensus
Probab=96.72 E-value=0.0023 Score=54.22 Aligned_cols=38 Identities=3% Similarity=-0.124 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 138 PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++.+...+++++-..+...|.+|+|...|++.|..+|.
T Consensus 249 fdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 249 FDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred HHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 34445556665422234589999999999999988886
No 448
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.72 E-value=0.0017 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 449
>KOG0082|consensus
Probab=96.71 E-value=0.0075 Score=52.10 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCccCC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDL 133 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D~ 133 (257)
..+-++|++||..-++.|.-.+..++++|||++.++-|.
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq 233 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQ 233 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhh
Confidence 688899999999999999999999999999999998555
No 450
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.014 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++..|+++|++|+||||.+..|...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988653
No 451
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.70 E-value=0.0054 Score=52.30 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=23.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++..|.++|--|+||||-+..|.+..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 468889999999999999999987543
No 452
>KOG3859|consensus
Probab=96.70 E-value=0.0018 Score=53.60 Aligned_cols=67 Identities=24% Similarity=0.236 Sum_probs=39.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..||.-+|.+|-|||||++.|.+..-..... ... .+++ ......+.... .+...+++++||.|+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~-----~H~-----~~~V--~L~~~TyelqE--snvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPS-----THT-----LPNV--KLQANTYELQE--SNVRLKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCC-----ccC-----CCCc--eeecchhhhhh--cCeeEEEEEEeecccc
Confidence 35799999999999999999997643211100 000 1111 11112222222 3444689999999986
Q ss_pred c
Q psy12244 107 D 107 (257)
Q Consensus 107 ~ 107 (257)
+
T Consensus 107 D 107 (406)
T KOG3859|consen 107 D 107 (406)
T ss_pred c
Confidence 6
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0041 Score=59.08 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|+.|+||||++..|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 457899999999999999998753
No 454
>KOG1533|consensus
Probab=96.65 E-value=0.0049 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
.+|+|+||+||||-.+-+...-..+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~ 29 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAI 29 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHh
Confidence 5799999999999988765443333
No 455
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0015 Score=52.33 Aligned_cols=21 Identities=38% Similarity=0.309 Sum_probs=18.9
Q ss_pred eeEEEEecCCCChHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~ 49 (257)
-.++|+|++|+|||||+.+|-
T Consensus 29 evv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999984
No 456
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.65 E-value=0.034 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+++..++.|--|+|||||+|+|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4567889999999999999999864
No 457
>PRK07261 topology modulation protein; Provisional
Probab=96.64 E-value=0.0019 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+|+|+|.+|+|||||...|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986543
No 458
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.59 E-value=0.0051 Score=55.09 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...++++|++|+||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988854
No 459
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.58 E-value=0.0026 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++...|+|+|++|+|||||+++|...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999764
No 460
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.58 E-value=0.0024 Score=47.91 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEecCCCChHHHHHHHHHhcC
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
|.++|++|+|||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999976554
No 461
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0016 Score=53.31 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-|+|+|++|+|||||++.+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999854
No 462
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.56 E-value=0.0025 Score=41.72 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
|++.|.+|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999653
No 463
>KOG0460|consensus
Probab=96.48 E-value=0.0024 Score=54.41 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=40.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCC--cccCCCccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGT--VLSSGSSQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~--~~~~g~~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..++.-+|||+.||+|+..+|-..-.. .....+-.-.|..++|..|||||+.++.
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHv 110 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHV 110 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeee
Confidence 357888999999999999987442221 1122234457888999999999999875
No 464
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0028 Score=49.80 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++|+|+|++|+||||+...|....+.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999876443
No 465
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.48 E-value=0.014 Score=40.14 Aligned_cols=69 Identities=26% Similarity=0.282 Sum_probs=45.8
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN 110 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 110 (257)
+++.|..|+||||+...|..... +.|... ...+ .+.++|+|+......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~------------------~~g~~v------~~~~--------d~iivD~~~~~~~~~ 49 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA------------------KRGKRV------LLID--------DYVLIDTPPGLGLLV 49 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH------------------HCCCeE------EEEC--------CEEEEeCCCCccchh
Confidence 67889999999999999865321 111111 1111 477999999865432
Q ss_pred H-HHHhhhhcceEEEEEecCcc
Q psy12244 111 E-VTRSLAACQGVVLLIDANQV 131 (257)
Q Consensus 111 ~-~~~~~~~aD~~ilVvd~~~~ 131 (257)
. .......+|.++++++....
T Consensus 50 ~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 50 LLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred hhhhhhhhhCCEEEEecCCchh
Confidence 2 24566788999999877653
No 466
>KOG4181|consensus
Probab=96.44 E-value=0.016 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-..|+++|.-|+|||||++.|..
T Consensus 188 f~VIgvlG~QgsGKStllslLaa 210 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAA 210 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhc
Confidence 45689999999999999998854
No 467
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.40 E-value=0.0034 Score=50.54 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|.|.+|+|||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999764
No 468
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.39 E-value=0.0029 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.5
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.++|+|++|+|||||+|.+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3589999999999999998855
No 469
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.37 E-value=0.0042 Score=53.57 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=80.1
Q ss_pred EEEeCCCCCcc-cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 97 LNLIDTPGHVD-FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 97 ~~liDtpG~~~-~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
..+-+-|||.. +.......+..+|+++-|+|+.. +|+.+. ...++-.+.+..
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~---~~~~~W~~~~~~ 88 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPK---EVTKKWKKYFKK 88 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCH---HHHHHHHHHHHh
Confidence 34556699865 67777788889999999999998 555332 222222333322
Q ss_pred C-ccceEEecccccccccccccccCCC--cccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCc
Q psy12244 152 D-KKSVLRIWHRRCFSCADCHRSLDST--NLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV 228 (257)
Q Consensus 152 ~-~~~~i~iSa~~g~gi~~l~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~ 228 (257)
. ....+.++++.+.+...+..++..+ ...+.+. +.. . ......+.++|..+.||++++++++......
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~-~-------~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~ 159 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLK-KKG-L-------LKRKIRVGVVGYPNVGKSTLINRLLGKKVAK 159 (322)
T ss_pred cCCCccEEEEeecccCccchHHHHHHHHHHHHHHHh-hcC-C-------CccceEEEEEcCCCCcHHHHHHHHhccccee
Confidence 1 3446889999999888776433321 0000000 000 0 0112447889999999999999999887755
Q ss_pred ccCCCccccC
Q psy12244 229 LSSGSSQVLD 238 (257)
Q Consensus 229 ~~~g~~~~~d 238 (257)
...-++++.+
T Consensus 160 ~s~~PG~Tk~ 169 (322)
T COG1161 160 TSNRPGTTKG 169 (322)
T ss_pred eCCCCceecc
Confidence 5444455444
No 470
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.003 Score=54.05 Aligned_cols=56 Identities=36% Similarity=0.519 Sum_probs=44.6
Q ss_pred cceeeEeeecccchhhHHHHHHhhCCccc------------CCC-------ccccCChhhHhhhCceEeeeeeeC
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-------SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-------~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
-++.-+|+|+.||+|++.++++....+.. .|. .-.+|.++.|+|.||||..+.-+|
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 46778999999999999999998765531 111 336899999999999999887654
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.35 E-value=0.0035 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++++|+.|+|||||++.++..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 46899999999999999988653
No 472
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.35 E-value=0.0027 Score=47.29 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEEccCCCccccceeeecc
Confidence 589999999999999999854
No 473
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.34 E-value=0.0041 Score=48.95 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+||||||+.+.|....+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999976544
No 474
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.32 E-value=0.0033 Score=47.19 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999764
No 475
>KOG3887|consensus
Probab=96.32 E-value=0.0045 Score=50.34 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=49.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|.++|.--+||||+-....++.... +.+-.|....+|.+- ..+.-..+.+||.||+.+|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn---------eTlflESTski~~d~----------is~sfinf~v~dfPGQ~~~ 88 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN---------ETLFLESTSKITRDH----------ISNSFINFQVWDFPGQMDF 88 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC---------ceeEeeccCcccHhh----------hhhhhcceEEeecCCcccc
Confidence 349999999999999887654422110 000011111111110 0112257889999999875
Q ss_pred HHH---HHHhhhhcceEEEEEecCc
Q psy12244 109 SNE---VTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 109 ~~~---~~~~~~~aD~~ilVvd~~~ 130 (257)
..- ...-++.+-+.++|+|+.+
T Consensus 89 Fd~s~D~e~iF~~~gALifvIDaQd 113 (347)
T KOG3887|consen 89 FDPSFDYEMIFRGVGALIFVIDAQD 113 (347)
T ss_pred CCCccCHHHHHhccCeEEEEEechH
Confidence 432 3344677888999999998
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.27 E-value=0.0036 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.9
Q ss_pred eeEEEEecCCCChHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~ 49 (257)
..++++|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999985
No 477
>PRK06217 hypothetical protein; Validated
Probab=96.26 E-value=0.0045 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+|+|+|.+|+|||||..+|....+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999976554
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.24 E-value=0.0039 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
-.+++|+|++|+|||||++.|+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999764
No 479
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.21 E-value=0.003 Score=57.05 Aligned_cols=45 Identities=36% Similarity=0.415 Sum_probs=36.8
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..++++.|||+.||+|+..++... ..|..++|.+||+||+...++
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~-----------~~~r~~~E~~rGiTi~lGfa~ 78 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGV-----------KTVRFKREKVRNITIKLGYAN 78 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCC-----------CcccchhhHHhCCchhccccc
Confidence 467889999999999999998621 236678999999999876653
No 480
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.17 E-value=0.0054 Score=44.87 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
|+|.|.+|||||||.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999765
No 481
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.16 E-value=0.0054 Score=48.60 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+++-|+|+|++|+|||||+++|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45669999999999999999997643
No 482
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.15 E-value=0.015 Score=51.72 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.|+|+|..|+|||||+.+|+.
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~ 23 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVA 23 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 483
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.15 E-value=0.003 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+|+|+|.+++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999765
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.13 E-value=0.005 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|++|||||||+++|....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987643
No 485
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.10 E-value=0.0059 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++.++|+|..|+|||||+++|+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 35689999999999999999965
No 486
>KOG0447|consensus
Probab=96.09 E-value=0.027 Score=51.05 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=60.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC------------------CCccc------ccchHH------------
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------------GSSQV------LDSLQV------------ 69 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~------------------~~~~~------~d~~~~------------ 69 (257)
...++|++||.-.+||||.+..+.+...-.... ..+.+ .|-.++
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 457789999999999999999886533222111 01111 111111
Q ss_pred ----HhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-------------cHHHHHHhhhhcceEEEEEe
Q psy12244 70 ----EQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-------------FSNEVTRSLAACQGVVLLID 127 (257)
Q Consensus 70 ----e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvd 127 (257)
....|-|+...+..+..++ .+ -..+.++|.||... ...+...++.+++++|+++.
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKG--Pg-LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ 457 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKG--PG-LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ 457 (980)
T ss_pred HHHhcccCCcccccceEEEeecC--CC-cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec
Confidence 1123556655555555554 22 24788999999643 44455667788999999973
No 487
>PRK13949 shikimate kinase; Provisional
Probab=96.09 E-value=0.0061 Score=47.51 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+|+|+|++|+|||||...|....+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 47999999999999999999776553
No 488
>PRK14530 adenylate kinase; Provisional
Probab=96.08 E-value=0.0057 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++|+|+|.+|+||||+...|....+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36999999999999999999776553
No 489
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.07 E-value=0.0059 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.+-|+|+|++|+|||||+++|..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 456688999999999999999964
No 490
>PRK08233 hypothetical protein; Provisional
Probab=96.06 E-value=0.006 Score=47.70 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..|+|.|.+|+|||||.++|....
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 568999999999999999997644
No 491
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.06 E-value=0.039 Score=48.76 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=22.4
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++-.|.++|--|+||||....|..+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~ 123 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKY 123 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHH
Confidence 345678999999999999999988653
No 492
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.06 E-value=0.005 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 493
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.06 E-value=0.0057 Score=44.87 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+.++|++|+||||++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 468999999999999999997643
No 494
>KOG0459|consensus
Probab=96.04 E-value=0.0016 Score=56.52 Aligned_cols=59 Identities=36% Similarity=0.369 Sum_probs=49.9
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc-----------------CCCccccCChhhHhhhCceEeeeeeeC
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-----------------SGSSQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~-----------------~g~~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+..+++++||++.||+|++..|++..|.+.. ..-.|.+|+.++|+++|-|++...++|
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 34578999999999999999999998887642 112789999999999999999988775
No 495
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.0047 Score=50.13 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-|+|+|++|+|||||+..|-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 389999999999999999843
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.0051 Score=53.02 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.6
Q ss_pred EEEEecCCCChHHHHHHHHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~ 50 (257)
++++|++|+|||||++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999965
No 497
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.02 E-value=0.0055 Score=48.89 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
|+|+|++|+|||||.+.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999664
No 498
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.00 E-value=0.028 Score=43.66 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+||||+.... .....+..+|.+|+|+++..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~ 96 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI 96 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc
Confidence 6889999986543 35566789999999998775
No 499
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.99 E-value=0.0065 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=16.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...+.+.|.|++|+|||+|++++..
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 500
>PLN02459 probable adenylate kinase
Probab=95.97 E-value=0.01 Score=49.37 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 12 KPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++..++.+.......++.+|+++|++|+||||+...|....+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~ 55 (261)
T PLN02459 13 ADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGV 55 (261)
T ss_pred hhhccccccCCccccCccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444444445567999999999999999999776554
Done!