Query psy12244
Match_columns 257
No_of_seqs 271 out of 2054
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 22:28:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 99.9 4.4E-26 1.5E-30 202.6 17.5 194 23-225 12-279 (439)
2 2ywe_A GTP-binding protein LEP 99.9 2.5E-25 8.4E-30 203.2 13.6 194 24-223 2-227 (600)
3 3cb4_D GTP-binding protein LEP 99.9 8.7E-25 3E-29 199.9 12.6 190 26-221 2-223 (599)
4 3j25_A Tetracycline resistance 99.9 8.8E-26 3E-30 208.9 5.2 184 27-221 1-280 (638)
5 1zun_B Sulfate adenylate trans 99.9 6.8E-24 2.3E-28 188.4 16.4 195 22-225 18-280 (434)
6 1r5b_A Eukaryotic peptide chai 99.9 8.5E-25 2.9E-29 195.7 9.7 195 24-225 39-308 (467)
7 3vqt_A RF-3, peptide chain rel 99.9 8.7E-25 3E-29 198.7 9.1 119 26-150 29-181 (548)
8 3p26_A Elongation factor 1 alp 99.9 7.3E-24 2.5E-28 190.6 12.0 193 27-225 32-306 (483)
9 1f60_A Elongation factor EEF1A 99.9 2.3E-23 8E-28 186.0 14.3 191 26-225 5-280 (458)
10 3izq_1 HBS1P, elongation facto 99.9 2.9E-23 1E-27 190.9 13.6 194 26-225 165-440 (611)
11 3mca_A HBS1, elongation factor 99.9 9.6E-25 3.3E-29 200.2 2.7 194 25-225 174-440 (592)
12 1jny_A EF-1-alpha, elongation 99.9 1.1E-23 3.6E-28 187.2 9.0 191 26-225 4-269 (435)
13 1wb1_A Translation elongation 99.9 1E-23 3.5E-28 189.3 7.8 184 26-225 17-236 (482)
14 1kk1_A EIF2gamma; initiation o 99.9 8.3E-23 2.8E-27 180.2 9.9 185 25-225 7-253 (410)
15 1s0u_A EIF-2-gamma, translatio 99.9 7.5E-23 2.6E-27 180.4 9.5 185 25-225 5-251 (408)
16 4fn5_A EF-G 1, elongation fact 99.9 1.1E-22 3.7E-27 190.5 10.6 128 23-150 8-166 (709)
17 2c78_A Elongation factor TU-A; 99.9 9.8E-23 3.4E-27 179.5 8.0 187 26-223 9-255 (405)
18 3tr5_A RF-3, peptide chain rel 99.9 4.8E-22 1.6E-26 179.8 11.3 119 26-150 11-163 (528)
19 1d2e_A Elongation factor TU (E 99.9 6.6E-23 2.3E-27 180.1 5.1 186 27-223 2-238 (397)
20 3sjy_A Translation initiation 99.8 9.8E-22 3.3E-26 173.0 6.4 195 26-226 6-246 (403)
21 1mky_A Probable GTP-binding pr 99.8 3.8E-21 1.3E-25 171.0 9.3 168 29-226 2-205 (439)
22 3avx_A Elongation factor TS, e 99.8 2.4E-21 8.3E-26 185.2 6.6 187 26-223 294-529 (1289)
23 2hjg_A GTP-binding protein ENG 99.8 9.3E-22 3.2E-26 174.8 2.8 164 29-227 4-201 (436)
24 2rdo_7 EF-G, elongation factor 99.8 7.8E-20 2.7E-24 170.7 15.0 126 24-149 6-162 (704)
25 1zo1_I IF2, translation initia 99.8 2E-21 6.7E-26 174.0 -0.8 173 26-221 2-210 (501)
26 2h5e_A Peptide chain release f 99.8 3.5E-19 1.2E-23 161.3 13.4 143 26-174 11-189 (529)
27 2xex_A Elongation factor G; GT 99.8 3.9E-19 1.3E-23 165.8 13.7 149 23-179 5-184 (693)
28 4dcu_A GTP-binding protein ENG 99.8 1.5E-20 5.3E-25 167.9 3.4 178 26-238 21-232 (456)
29 2dy1_A Elongation factor G; tr 99.8 2.4E-19 8.1E-24 166.7 11.4 122 22-150 3-154 (665)
30 2elf_A Protein translation elo 99.8 6.3E-21 2.1E-25 165.7 -0.0 166 28-225 21-229 (370)
31 4dkx_A RAS-related protein RAB 99.8 3.7E-19 1.3E-23 143.5 10.0 129 27-176 12-172 (216)
32 1dar_A EF-G, elongation factor 99.8 1.2E-18 4.1E-23 162.5 14.8 147 25-179 9-186 (691)
33 3izy_P Translation initiation 99.8 3.1E-21 1.1E-25 174.1 -4.9 173 27-221 3-211 (537)
34 2il1_A RAB12; G-protein, GDP, 99.8 1.2E-18 3.9E-23 137.8 9.9 132 24-175 22-185 (192)
35 3tkl_A RAS-related protein RAB 99.8 1.5E-18 5.1E-23 137.1 10.4 130 26-176 14-175 (196)
36 2lkc_A Translation initiation 99.8 1.1E-19 3.7E-24 141.4 3.6 131 26-176 6-167 (178)
37 1zd9_A ADP-ribosylation factor 99.8 1.3E-18 4.6E-23 136.9 9.8 129 26-176 20-181 (188)
38 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.3E-18 4.3E-23 135.2 9.3 131 25-176 4-170 (177)
39 3iev_A GTP-binding protein ERA 99.8 1.6E-18 5.6E-23 147.1 10.4 134 24-176 6-178 (308)
40 1ky3_A GTP-binding protein YPT 99.8 3.9E-19 1.3E-23 138.5 5.8 133 25-176 5-174 (182)
41 2gf9_A RAS-related protein RAB 99.8 1.6E-18 5.5E-23 136.4 9.3 142 14-176 8-181 (189)
42 2p5s_A RAS and EF-hand domain 99.8 2.7E-18 9.2E-23 136.4 10.3 134 21-175 21-192 (199)
43 1r8s_A ADP-ribosylation factor 99.8 4E-18 1.4E-22 130.7 10.9 123 30-175 2-157 (164)
44 1upt_A ARL1, ADP-ribosylation 99.8 2.7E-18 9.4E-23 132.4 9.9 128 26-176 5-165 (171)
45 2g6b_A RAS-related protein RAB 99.8 5.1E-18 1.7E-22 132.1 11.4 131 26-176 8-170 (180)
46 2hup_A RAS-related protein RAB 99.8 6.1E-18 2.1E-22 134.7 12.1 131 26-176 27-189 (201)
47 2ew1_A RAS-related protein RAB 99.8 2.8E-18 9.6E-23 136.9 10.0 130 26-176 24-185 (201)
48 1g16_A RAS-related protein SEC 99.8 2E-18 6.8E-23 133.0 8.8 129 27-176 2-161 (170)
49 1wf3_A GTP-binding protein; GT 99.8 1.9E-18 6.6E-23 146.1 9.2 129 26-176 5-169 (301)
50 2efe_B Small GTP-binding prote 99.8 3.5E-18 1.2E-22 133.1 9.9 130 26-176 10-171 (181)
51 1z06_A RAS-related protein RAB 99.8 2.3E-18 7.8E-23 135.6 8.8 134 22-176 14-184 (189)
52 2a5j_A RAS-related protein RAB 99.8 2.5E-18 8.5E-23 135.6 9.0 130 25-175 18-179 (191)
53 3tw8_B RAS-related protein RAB 99.8 1.6E-18 5.5E-23 134.9 7.8 130 26-176 7-167 (181)
54 3bc1_A RAS-related protein RAB 99.7 8.2E-18 2.8E-22 132.3 11.7 140 20-176 3-181 (195)
55 1fzq_A ADP-ribosylation factor 99.7 3.6E-18 1.2E-22 133.7 9.6 125 26-176 14-174 (181)
56 1z0f_A RAB14, member RAS oncog 99.7 6.4E-18 2.2E-22 131.2 10.9 129 25-175 12-173 (179)
57 1zj6_A ADP-ribosylation factor 99.7 3.1E-18 1.1E-22 134.5 9.1 128 26-176 14-174 (187)
58 2h57_A ADP-ribosylation factor 99.7 1.8E-18 6.1E-23 136.3 7.7 130 25-175 18-182 (190)
59 2oil_A CATX-8, RAS-related pro 99.7 3.1E-18 1.1E-22 135.2 9.0 129 26-175 23-183 (193)
60 2bcg_Y Protein YP2, GTP-bindin 99.7 3.2E-18 1.1E-22 136.6 9.2 130 26-176 6-167 (206)
61 3clv_A RAB5 protein, putative; 99.7 2.3E-18 8E-23 136.4 8.3 77 95-175 93-199 (208)
62 2bme_A RAB4A, RAS-related prot 99.7 5.6E-18 1.9E-22 132.7 10.4 129 26-176 8-169 (186)
63 1m2o_B GTP-binding protein SAR 99.7 2.7E-18 9.3E-23 135.5 8.5 123 27-175 22-187 (190)
64 2b6h_A ADP-ribosylation factor 99.7 2E-18 6.8E-23 136.6 7.5 132 21-175 22-186 (192)
65 4bas_A ADP-ribosylation factor 99.7 2.6E-18 8.8E-23 136.0 8.2 134 22-176 11-185 (199)
66 1ek0_A Protein (GTP-binding pr 99.7 4.5E-18 1.5E-22 130.8 9.3 128 28-176 3-165 (170)
67 1zbd_A Rabphilin-3A; G protein 99.7 1.2E-17 4.1E-22 132.8 12.0 130 26-176 6-167 (203)
68 3t1o_A Gliding protein MGLA; G 99.7 4E-18 1.4E-22 134.5 9.1 142 25-176 11-188 (198)
69 2h17_A ADP-ribosylation factor 99.7 2.1E-18 7.1E-23 134.9 7.3 128 25-175 18-178 (181)
70 2hxs_A RAB-26, RAS-related pro 99.7 4.4E-18 1.5E-22 132.2 9.1 131 26-176 4-169 (178)
71 1r2q_A RAS-related protein RAB 99.7 3.5E-18 1.2E-22 131.5 8.4 129 26-176 4-165 (170)
72 1f6b_A SAR1; gtpases, N-termin 99.7 1.6E-18 5.6E-23 137.8 6.6 126 27-175 24-194 (198)
73 2fu5_C RAS-related protein RAB 99.7 1.8E-18 6.1E-23 135.2 6.7 130 26-176 6-167 (183)
74 2dyk_A GTP-binding protein; GT 99.7 2E-18 6.8E-23 131.9 6.8 124 28-175 1-157 (161)
75 4dsu_A GTPase KRAS, isoform 2B 99.7 1.3E-17 4.4E-22 130.7 11.2 129 26-176 2-162 (189)
76 1z0j_A RAB-22, RAS-related pro 99.7 5.4E-18 1.8E-22 130.5 8.9 129 26-175 4-164 (170)
77 1vg8_A RAS-related protein RAB 99.7 1E-18 3.5E-23 139.3 4.9 131 26-176 6-171 (207)
78 3cph_A RAS-related protein SEC 99.7 4.8E-18 1.7E-22 136.0 8.8 131 25-176 17-178 (213)
79 3t5g_A GTP-binding protein RHE 99.7 4.4E-18 1.5E-22 132.8 7.7 131 24-176 2-165 (181)
80 2hjg_A GTP-binding protein ENG 99.7 4.4E-18 1.5E-22 151.2 8.6 131 26-175 173-344 (436)
81 1ksh_A ARF-like protein 2; sma 99.7 3.8E-18 1.3E-22 133.8 7.3 128 26-176 16-176 (186)
82 2f7s_A C25KG, RAS-related prot 99.7 4.9E-18 1.7E-22 136.5 8.0 135 25-176 22-195 (217)
83 1z08_A RAS-related protein RAB 99.7 7.9E-18 2.7E-22 129.7 8.8 129 26-175 4-164 (170)
84 3iby_A Ferrous iron transport 99.7 9.6E-19 3.3E-23 144.7 3.8 127 28-177 1-164 (256)
85 2y8e_A RAB-protein 6, GH09086P 99.7 6E-18 2E-22 131.4 8.1 128 27-176 13-173 (179)
86 1c1y_A RAS-related protein RAP 99.7 8.9E-18 3.1E-22 128.9 8.9 127 28-175 3-162 (167)
87 3dz8_A RAS-related protein RAB 99.7 6.6E-18 2.2E-22 133.2 8.2 130 26-176 21-182 (191)
88 1svi_A GTP-binding protein YSX 99.7 1.3E-17 4.6E-22 131.5 9.9 135 20-175 15-190 (195)
89 3kkq_A RAS-related protein M-R 99.7 2.2E-17 7.6E-22 129.0 11.0 128 26-175 16-177 (183)
90 2fn4_A P23, RAS-related protei 99.7 1.1E-17 3.9E-22 130.0 9.2 131 24-176 5-168 (181)
91 1x3s_A RAS-related protein RAB 99.7 1.1E-17 3.8E-22 131.8 9.1 130 26-176 13-174 (195)
92 1z2a_A RAS-related protein RAB 99.7 1.1E-17 3.6E-22 128.6 8.7 129 26-175 3-162 (168)
93 1kao_A RAP2A; GTP-binding prot 99.7 2.5E-17 8.7E-22 126.1 10.7 126 28-175 3-161 (167)
94 2fh5_B SR-beta, signal recogni 99.7 1.9E-17 6.3E-22 132.9 10.4 85 26-130 5-90 (214)
95 4dhe_A Probable GTP-binding pr 99.7 9.6E-19 3.3E-23 141.2 2.7 140 19-176 20-207 (223)
96 2atx_A Small GTP binding prote 99.7 2.5E-17 8.6E-22 130.0 10.8 137 18-176 8-189 (194)
97 2fg5_A RAB-22B, RAS-related pr 99.7 1.1E-17 3.9E-22 132.0 8.8 130 26-176 21-182 (192)
98 3q85_A GTP-binding protein REM 99.7 2E-17 6.9E-22 127.3 9.4 127 28-175 2-162 (169)
99 3pqc_A Probable GTP-binding pr 99.7 7.8E-18 2.7E-22 132.6 7.2 135 19-175 14-189 (195)
100 1u8z_A RAS-related protein RAL 99.7 4.3E-17 1.5E-21 125.0 10.9 126 27-175 3-162 (168)
101 3q72_A GTP-binding protein RAD 99.7 1.7E-17 5.9E-22 127.4 8.7 125 28-175 2-159 (166)
102 2bov_A RAla, RAS-related prote 99.7 6E-17 2.1E-21 128.8 12.1 129 25-176 11-173 (206)
103 3oes_A GTPase rhebl1; small GT 99.7 6.9E-18 2.4E-22 134.2 6.4 133 22-176 18-183 (201)
104 2o52_A RAS-related protein RAB 99.7 7.8E-18 2.7E-22 133.9 6.5 129 26-176 23-184 (200)
105 2nzj_A GTP-binding protein REM 99.7 3.2E-17 1.1E-21 126.9 9.8 127 27-175 3-164 (175)
106 3con_A GTPase NRAS; structural 99.7 6.2E-17 2.1E-21 127.3 11.6 134 21-176 14-179 (190)
107 3qq5_A Small GTP-binding prote 99.7 1.5E-18 5.2E-23 152.7 2.1 137 19-176 25-192 (423)
108 4dcu_A GTP-binding protein ENG 99.7 3.4E-17 1.2E-21 146.2 10.8 132 26-176 193-365 (456)
109 2erx_A GTP-binding protein DI- 99.7 4.4E-17 1.5E-21 125.5 10.0 128 27-176 2-163 (172)
110 3cbq_A GTP-binding protein REM 99.7 5.6E-17 1.9E-21 128.6 10.8 131 25-176 20-184 (195)
111 2ce2_X GTPase HRAS; signaling 99.7 1.6E-16 5.4E-21 121.4 12.9 126 28-175 3-160 (166)
112 3o47_A ADP-ribosylation factor 99.7 1E-17 3.5E-22 143.5 6.8 128 26-176 163-323 (329)
113 2wji_A Ferrous iron transport 99.7 4.6E-18 1.6E-22 131.1 4.0 125 28-175 3-160 (165)
114 2a9k_A RAS-related protein RAL 99.7 8.2E-17 2.8E-21 125.8 11.2 128 26-176 16-177 (187)
115 2x77_A ADP-ribosylation factor 99.7 4.7E-18 1.6E-22 133.7 4.1 128 26-176 20-180 (189)
116 2qu8_A Putative nucleolar GTP- 99.7 2.5E-17 8.4E-22 133.7 8.4 138 19-176 18-201 (228)
117 3cpj_B GTP-binding protein YPT 99.7 1.2E-17 4.2E-22 135.0 6.4 130 26-176 11-172 (223)
118 2gf0_A GTP-binding protein DI- 99.7 1.1E-16 3.7E-21 126.6 11.7 129 26-176 6-167 (199)
119 1moz_A ARL1, ADP-ribosylation 99.7 6.6E-18 2.3E-22 131.9 4.4 124 26-175 16-175 (183)
120 3ihw_A Centg3; RAS, centaurin, 99.7 1.6E-16 5.5E-21 124.7 12.3 126 24-176 16-176 (184)
121 3gj0_A GTP-binding nuclear pro 99.7 1.3E-17 4.3E-22 134.7 5.6 131 24-176 11-171 (221)
122 1n0u_A EF-2, elongation factor 99.7 2.7E-17 9.3E-22 156.4 8.6 106 25-130 16-133 (842)
123 3reg_A RHO-like small GTPase; 99.7 6.6E-17 2.3E-21 127.7 9.5 130 26-176 21-184 (194)
124 3i8s_A Ferrous iron transport 99.7 5.3E-18 1.8E-22 141.6 3.0 127 28-177 3-166 (274)
125 4djt_A GTP-binding nuclear pro 99.7 1.1E-17 3.8E-22 134.6 4.1 133 26-176 9-171 (218)
126 2atv_A RERG, RAS-like estrogen 99.7 1.2E-16 4.1E-21 126.5 9.7 133 20-175 20-186 (196)
127 2j0v_A RAC-like GTP-binding pr 99.7 7.2E-17 2.5E-21 129.2 8.5 130 26-177 7-177 (212)
128 1ega_A Protein (GTP-binding pr 99.7 1.7E-17 5.8E-22 140.4 4.9 131 26-176 6-171 (301)
129 3a1s_A Iron(II) transport prot 99.7 9.7E-18 3.3E-22 138.9 3.2 128 26-176 3-163 (258)
130 3l0i_B RAS-related protein RAB 99.7 1.4E-18 4.8E-23 138.0 -1.9 130 26-176 31-192 (199)
131 2xtp_A GTPase IMAP family memb 99.7 5.9E-17 2E-21 134.1 7.8 135 24-176 18-204 (260)
132 2gj8_A MNME, tRNA modification 99.7 3.7E-17 1.3E-21 127.0 6.0 128 28-176 4-162 (172)
133 2gco_A H9, RHO-related GTP-bin 99.7 1.2E-16 4.1E-21 127.0 9.0 129 26-175 23-195 (201)
134 4gzl_A RAS-related C3 botulinu 99.7 8.5E-17 2.9E-21 128.3 8.1 129 26-175 28-200 (204)
135 2yc2_C IFT27, small RAB-relate 99.7 1.3E-17 4.5E-22 132.7 3.2 132 26-176 18-188 (208)
136 1g7s_A Translation initiation 99.7 4.3E-18 1.5E-22 155.8 0.1 181 27-222 4-265 (594)
137 3bwd_D RAC-like GTP-binding pr 99.7 2.6E-17 8.9E-22 128.3 4.5 130 26-176 6-177 (182)
138 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.5E-16 5.3E-21 124.2 8.2 130 27-177 4-177 (186)
139 2wjg_A FEOB, ferrous iron tran 99.7 3.2E-17 1.1E-21 128.6 4.3 127 27-176 6-165 (188)
140 3gee_A MNME, tRNA modification 99.7 8.8E-17 3E-21 143.7 7.6 126 29-177 234-395 (476)
141 2j1l_A RHO-related GTP-binding 99.7 1.4E-16 5E-21 127.9 7.9 130 26-176 32-205 (214)
142 3q3j_B RHO-related GTP-binding 99.7 1.3E-16 4.5E-21 128.3 7.5 133 24-177 23-200 (214)
143 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-16 3.8E-21 144.4 7.9 128 26-176 320-480 (497)
144 3llu_A RAS-related GTP-binding 99.7 7.3E-17 2.5E-21 127.8 5.8 136 21-175 13-192 (196)
145 3k53_A Ferrous iron transport 99.7 6E-17 2E-21 135.0 5.5 126 28-176 3-162 (271)
146 2fv8_A H6, RHO-related GTP-bin 99.7 1.8E-16 6.2E-21 126.6 8.2 130 27-177 24-197 (207)
147 2q3h_A RAS homolog gene family 99.7 3.5E-17 1.2E-21 129.9 3.9 131 25-176 17-191 (201)
148 3b1v_A Ferrous iron uptake tra 99.7 1.8E-17 6.2E-22 138.1 1.9 125 28-176 3-160 (272)
149 1gwn_A RHO-related GTP-binding 99.7 2.5E-16 8.6E-21 125.9 8.4 141 14-176 15-200 (205)
150 1m7b_A RND3/RHOE small GTP-bin 99.6 3E-16 1E-20 122.9 8.5 130 26-176 5-179 (184)
151 3th5_A RAS-related C3 botulinu 99.5 1E-17 3.6E-22 133.4 0.0 134 24-176 26-201 (204)
152 1mky_A Probable GTP-binding pr 99.6 4E-16 1.4E-20 138.7 9.9 131 26-175 178-350 (439)
153 1xzp_A Probable tRNA modificat 99.6 1.2E-16 4.2E-21 142.9 6.4 125 29-176 244-401 (482)
154 2iwr_A Centaurin gamma 1; ANK 99.6 1.1E-15 3.7E-20 118.8 11.1 122 26-175 5-164 (178)
155 3c5c_A RAS-like protein 12; GD 99.6 3.6E-16 1.2E-20 122.9 7.6 128 25-175 18-181 (187)
156 2g3y_A GTP-binding protein GEM 99.6 7.2E-16 2.5E-20 123.8 9.1 131 26-176 35-199 (211)
157 3r7w_A Gtpase1, GTP-binding pr 99.6 4.7E-16 1.6E-20 131.9 7.5 129 28-175 3-176 (307)
158 2cjw_A GTP-binding protein GEM 99.6 1.6E-15 5.6E-20 119.8 8.7 130 27-176 5-168 (192)
159 3lxw_A GTPase IMAP family memb 99.6 1.9E-15 6.4E-20 124.3 8.6 87 26-130 19-117 (247)
160 3geh_A MNME, tRNA modification 99.6 1.6E-16 5.6E-21 141.4 2.2 124 29-176 225-380 (462)
161 2f9l_A RAB11B, member RAS onco 99.6 2E-15 6.9E-20 119.7 4.9 129 27-176 4-164 (199)
162 2cxx_A Probable GTP-binding pr 99.6 3E-15 1E-19 117.2 5.5 123 29-176 2-180 (190)
163 3dpu_A RAB family protein; roc 99.5 1.6E-15 5.4E-20 138.0 4.1 132 26-176 39-204 (535)
164 2zej_A Dardarin, leucine-rich 99.5 2.4E-15 8.2E-20 117.8 4.2 134 29-175 3-173 (184)
165 2wkq_A NPH1-1, RAS-related C3 99.5 3.5E-15 1.2E-19 127.2 5.1 129 27-176 154-326 (332)
166 3t5d_A Septin-7; GTP-binding p 99.5 1E-14 3.4E-19 121.7 7.7 142 26-177 6-201 (274)
167 1lnz_A SPO0B-associated GTP-bi 99.5 6.7E-15 2.3E-19 126.2 5.4 126 29-176 159-326 (342)
168 1oix_A RAS-related protein RAB 99.5 4.9E-15 1.7E-19 116.9 4.1 129 26-175 27-187 (191)
169 3lxx_A GTPase IMAP family memb 99.5 2.8E-14 9.7E-19 116.5 8.7 91 22-130 23-124 (239)
170 2qtf_A Protein HFLX, GTP-bindi 99.5 5.8E-14 2E-18 121.5 11.0 130 27-176 178-350 (364)
171 2e87_A Hypothetical protein PH 99.5 4E-14 1.4E-18 122.5 8.6 128 26-176 165-332 (357)
172 2aka_B Dynamin-1; fusion prote 99.5 3.9E-14 1.3E-18 119.3 7.6 80 95-175 125-248 (299)
173 1nrj_B SR-beta, signal recogni 99.5 3.7E-14 1.3E-18 113.8 6.7 83 23-129 7-93 (218)
174 3r7w_B Gtpase2, GTP-binding pr 99.4 9.4E-14 3.2E-18 117.6 5.6 125 30-175 1-169 (331)
175 3def_A T7I23.11 protein; chlor 99.4 1.2E-12 4.2E-17 108.3 9.4 116 27-162 35-160 (262)
176 3c5h_A Glucocorticoid receptor 99.3 3.9E-14 1.3E-18 116.9 -1.8 28 23-50 14-50 (255)
177 1jwy_B Dynamin A GTPase domain 99.3 5.9E-13 2E-17 112.9 4.6 35 95-129 131-178 (315)
178 1wxq_A GTP-binding protein; st 99.3 1.1E-12 3.7E-17 114.7 6.2 87 30-130 2-113 (397)
179 2j69_A Bacterial dynamin-like 99.3 6.2E-13 2.1E-17 124.1 4.2 35 96-130 175-212 (695)
180 4a9a_A Ribosome-interacting GT 99.3 4.5E-12 1.5E-16 109.6 7.9 85 26-130 70-161 (376)
181 2p67_A LAO/AO transport system 99.3 1.4E-12 4.8E-17 112.1 4.6 79 95-176 149-257 (341)
182 3p32_A Probable GTPase RV1496/ 99.3 3.7E-12 1.3E-16 110.0 6.7 80 94-176 171-280 (355)
183 1h65_A Chloroplast outer envel 99.3 1.6E-11 5.4E-16 102.0 9.7 117 27-163 38-164 (270)
184 1pui_A ENGB, probable GTP-bind 99.3 7.8E-12 2.7E-16 99.5 7.1 133 23-176 21-195 (210)
185 2qag_A Septin-2, protein NEDD5 99.3 4.8E-12 1.7E-16 109.5 6.3 137 28-174 37-227 (361)
186 2x2e_A Dynamin-1; nitration, h 99.2 1.7E-12 5.7E-17 112.1 2.8 26 27-52 30-55 (353)
187 1udx_A The GTP-binding protein 99.2 1.1E-11 3.7E-16 108.8 7.0 126 29-176 158-321 (416)
188 3t34_A Dynamin-related protein 99.2 1.3E-11 4.3E-16 106.8 6.9 79 95-174 136-255 (360)
189 2wsm_A Hydrogenase expression/ 99.2 5.5E-12 1.9E-16 101.3 3.1 145 26-176 28-210 (221)
190 2ged_A SR-beta, signal recogni 99.1 9E-12 3.1E-16 97.7 2.2 80 26-129 46-129 (193)
191 3zvr_A Dynamin-1; hydrolase, D 99.1 3.8E-11 1.3E-15 112.0 6.3 144 27-176 50-274 (772)
192 2www_A Methylmalonic aciduria 99.1 5E-11 1.7E-15 102.6 6.6 79 95-176 167-275 (349)
193 1jal_A YCHF protein; nucleotid 99.1 6.1E-11 2.1E-15 102.0 6.6 88 29-130 3-108 (363)
194 2ohf_A Protein OLA1, GTP-bindi 99.1 1.3E-10 4.4E-15 100.9 7.0 90 27-130 21-128 (396)
195 2qpt_A EH domain-containing pr 99.1 2.5E-10 8.7E-15 103.8 8.4 35 96-130 155-200 (550)
196 2qnr_A Septin-2, protein NEDD5 99.0 1.7E-10 5.8E-15 97.3 5.6 24 27-50 17-40 (301)
197 2dby_A GTP-binding protein; GD 99.0 5.2E-10 1.8E-14 96.7 8.4 88 29-130 2-111 (368)
198 2qm8_A GTPase/ATPase; G protei 98.9 8.1E-10 2.8E-14 94.6 5.9 79 95-176 148-257 (337)
199 1cip_A Protein (guanine nucleo 98.9 1.5E-09 5.3E-14 93.3 6.2 36 95-130 193-228 (353)
200 1yrb_A ATP(GTP)binding protein 98.9 8.7E-09 3E-13 84.7 9.6 26 26-51 12-37 (262)
201 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 8.8E-09 3E-13 89.5 9.0 91 27-130 19-127 (392)
202 4fn5_A EF-G 1, elongation fact 98.8 8.4E-10 2.9E-14 103.4 0.6 62 196-257 8-73 (709)
203 3ohm_A Guanine nucleotide-bind 98.8 3.8E-09 1.3E-13 89.7 4.4 35 95-129 167-201 (327)
204 2qag_C Septin-7; cell cycle, c 98.7 1.2E-08 4.2E-13 89.4 7.0 24 28-51 31-54 (418)
205 2j37_W Signal recognition part 98.7 4.3E-09 1.5E-13 94.3 4.0 150 26-177 99-310 (504)
206 2hf9_A Probable hydrogenase ni 98.7 1.3E-08 4.4E-13 81.7 6.2 27 26-52 36-62 (226)
207 3vqt_A RF-3, peptide chain rel 98.7 9.9E-10 3.4E-14 99.8 -0.5 60 198-257 28-95 (548)
208 3ec1_A YQEH GTPase; atnos1, at 98.7 5.4E-09 1.8E-13 90.6 3.2 124 29-172 163-323 (369)
209 4fid_A G protein alpha subunit 98.7 3.8E-08 1.3E-12 83.9 7.3 35 95-129 161-195 (340)
210 1u0l_A Probable GTPase ENGC; p 98.6 5.7E-09 2E-13 87.9 1.2 101 96-224 64-192 (301)
211 3h2y_A GTPase family protein; 98.6 1.8E-08 6.1E-13 87.2 3.9 126 29-173 161-323 (368)
212 1puj_A YLQF, conserved hypothe 98.5 6.8E-08 2.3E-12 80.5 4.5 59 27-107 119-177 (282)
213 1f5n_A Interferon-induced guan 98.4 1.9E-07 6.4E-12 85.1 5.6 27 26-52 36-62 (592)
214 1puj_A YLQF, conserved hypothe 98.4 2.3E-07 7.9E-12 77.3 4.3 117 99-225 3-144 (282)
215 3ec1_A YQEH GTPase; atnos1, at 98.3 3.4E-07 1.2E-11 79.2 5.0 106 97-224 51-185 (369)
216 3h2y_A GTPase family protein; 98.3 7E-07 2.4E-11 77.2 6.0 101 104-225 55-184 (368)
217 3cnl_A YLQF, putative uncharac 98.3 2.4E-07 8.3E-12 76.3 2.1 57 29-107 100-156 (262)
218 3dm5_A SRP54, signal recogniti 98.2 3.1E-06 1.1E-10 74.4 7.0 24 27-50 99-122 (443)
219 1zcb_A G alpha I/13; GTP-bindi 98.1 7.5E-07 2.6E-11 76.7 1.7 36 95-130 201-236 (362)
220 2yv5_A YJEQ protein; hydrolase 98.1 4.8E-07 1.6E-11 76.2 0.4 95 105-225 66-188 (302)
221 1tq4_A IIGP1, interferon-induc 98.0 4E-05 1.4E-09 67.0 10.7 22 29-50 70-91 (413)
222 3kl4_A SRP54, signal recogniti 98.0 1.3E-05 4.4E-10 70.5 7.5 24 27-50 96-119 (433)
223 2qag_B Septin-6, protein NEDD5 98.0 3.2E-05 1.1E-09 67.7 9.6 26 26-51 40-65 (427)
224 3cnl_A YLQF, putative uncharac 97.9 8.2E-06 2.8E-10 67.1 5.2 96 103-225 5-123 (262)
225 3q5d_A Atlastin-1; G protein, 97.9 6E-05 2E-09 66.5 9.9 27 25-51 64-90 (447)
226 2xtz_A Guanine nucleotide-bind 97.7 2.3E-06 7.8E-11 73.5 -1.6 37 93-129 181-217 (354)
227 2v3c_C SRP54, signal recogniti 97.7 3.8E-05 1.3E-09 67.7 5.8 26 26-51 97-122 (432)
228 3sop_A Neuronal-specific septi 97.6 3.4E-05 1.2E-09 63.7 3.8 24 29-52 3-26 (270)
229 2ywe_A GTP-binding protein LEP 97.6 2E-05 6.9E-10 72.1 2.2 58 198-255 3-61 (600)
230 2xxa_A Signal recognition part 97.6 4.6E-05 1.6E-09 67.1 4.0 26 26-51 98-123 (433)
231 3cb4_D GTP-binding protein LEP 97.4 4.2E-05 1.4E-09 70.0 2.1 56 200-255 3-59 (599)
232 1j8m_F SRP54, signal recogniti 97.4 0.00018 6.1E-09 60.2 4.9 24 28-51 98-121 (297)
233 3j2k_7 ERF3, eukaryotic polype 97.3 0.00021 7.3E-09 63.1 4.6 57 200-256 16-89 (439)
234 2rdo_7 EF-G, elongation factor 97.3 0.00015 5.2E-09 67.7 3.8 58 199-256 8-69 (704)
235 1azs_C GS-alpha; complex (lyas 97.3 0.00041 1.4E-08 60.3 6.2 69 95-163 217-294 (402)
236 1t9h_A YLOQ, probable GTPase E 97.2 0.0002 6.7E-09 60.2 3.1 68 131-223 127-195 (307)
237 1n0u_A EF-2, elongation factor 97.1 0.00016 5.4E-09 68.9 2.6 57 199-255 17-75 (842)
238 3ney_A 55 kDa erythrocyte memb 97.1 0.0003 1E-08 55.1 3.7 31 22-52 13-43 (197)
239 1zu4_A FTSY; GTPase, signal re 97.1 0.00041 1.4E-08 58.6 4.4 26 26-51 103-128 (320)
240 2yhs_A FTSY, cell division pro 97.1 0.00083 2.9E-08 59.8 6.3 26 26-51 291-316 (503)
241 1t9h_A YLOQ, probable GTPase E 97.0 0.00018 6.1E-09 60.4 1.7 22 29-50 174-195 (307)
242 3l82_B F-box only protein 4; T 97.0 0.00029 1E-08 55.5 2.5 35 96-130 97-137 (227)
243 2h5e_A Peptide chain release f 96.8 0.00028 9.6E-09 63.7 1.4 58 199-256 11-76 (529)
244 1lvg_A Guanylate kinase, GMP k 96.8 0.00056 1.9E-08 53.5 2.9 23 29-51 5-27 (198)
245 1ye8_A Protein THEP1, hypothet 96.8 0.00066 2.2E-08 52.3 3.2 23 30-52 2-24 (178)
246 1kgd_A CASK, peripheral plasma 96.8 0.00066 2.3E-08 52.2 3.2 24 29-52 6-29 (180)
247 1zp6_A Hypothetical protein AT 96.8 0.0008 2.7E-08 51.9 3.5 24 28-51 9-32 (191)
248 3tr5_A RF-3, peptide chain rel 96.8 0.00017 5.9E-09 65.1 -0.7 59 198-256 10-76 (528)
249 3asz_A Uridine kinase; cytidin 96.7 0.001 3.6E-08 52.2 3.7 26 26-51 4-29 (211)
250 1dar_A EF-G, elongation factor 96.7 0.00069 2.4E-08 63.2 2.7 58 199-256 10-71 (691)
251 2xex_A Elongation factor G; GT 96.6 0.00076 2.6E-08 62.9 2.6 58 199-256 8-69 (693)
252 3a00_A Guanylate kinase, GMP k 96.6 0.001 3.6E-08 51.3 2.9 23 30-52 3-25 (186)
253 3c8u_A Fructokinase; YP_612366 96.6 0.0016 5.4E-08 51.2 3.8 25 27-51 21-45 (208)
254 3l2o_B F-box only protein 4; s 96.6 0.001 3.5E-08 55.0 2.7 31 102-132 194-224 (312)
255 4eun_A Thermoresistant glucoki 96.5 0.0016 5.3E-08 50.9 3.6 28 27-54 28-55 (200)
256 1znw_A Guanylate kinase, GMP k 96.5 0.0013 4.4E-08 51.7 3.0 24 29-52 21-44 (207)
257 3tr0_A Guanylate kinase, GMP k 96.5 0.0013 4.5E-08 51.2 3.1 24 29-52 8-31 (205)
258 2ffh_A Protein (FFH); SRP54, s 96.5 0.0032 1.1E-07 55.1 5.6 25 27-51 97-121 (425)
259 1z6g_A Guanylate kinase; struc 96.5 0.0014 4.7E-08 52.1 3.0 25 28-52 23-47 (218)
260 1bif_A 6-phosphofructo-2-kinas 96.5 0.00043 1.5E-08 61.6 -0.1 26 26-51 37-62 (469)
261 1s96_A Guanylate kinase, GMP k 96.5 0.0015 5.1E-08 52.0 3.1 24 29-52 17-40 (219)
262 3tau_A Guanylate kinase, GMP k 96.5 0.0019 6.3E-08 50.8 3.6 25 28-52 8-32 (208)
263 3kb2_A SPBC2 prophage-derived 96.5 0.0018 6.1E-08 48.8 3.3 25 29-53 2-26 (173)
264 1knq_A Gluconate kinase; ALFA/ 96.4 0.0026 8.7E-08 48.3 4.2 26 28-53 8-33 (175)
265 1r5b_A Eukaryotic peptide chai 96.4 0.0009 3.1E-08 59.5 1.8 56 200-255 42-114 (467)
266 1np6_A Molybdopterin-guanine d 96.4 0.0021 7.1E-08 49.3 3.5 23 28-50 6-28 (174)
267 3mca_A HBS1, elongation factor 96.4 0.00081 2.8E-08 61.6 1.3 56 201-256 177-249 (592)
268 3iij_A Coilin-interacting nucl 96.4 0.0024 8.3E-08 48.7 3.8 27 27-53 10-36 (180)
269 1ex7_A Guanylate kinase; subst 96.4 0.0019 6.6E-08 50.0 3.1 22 31-52 4-25 (186)
270 2qor_A Guanylate kinase; phosp 96.4 0.0021 7.1E-08 50.3 3.3 26 27-52 11-36 (204)
271 2rcn_A Probable GTPase ENGC; Y 96.4 0.0019 6.6E-08 55.2 3.3 45 154-223 193-237 (358)
272 1ukz_A Uridylate kinase; trans 96.3 0.0035 1.2E-07 48.8 4.5 29 25-53 12-40 (203)
273 2j41_A Guanylate kinase; GMP, 96.3 0.0024 8.2E-08 49.7 3.5 23 29-51 7-29 (207)
274 1kag_A SKI, shikimate kinase I 96.3 0.0023 7.8E-08 48.4 3.3 25 29-53 5-29 (173)
275 1nn5_A Similar to deoxythymidy 96.3 0.0028 9.4E-08 49.7 3.7 26 26-51 7-32 (215)
276 3t61_A Gluconokinase; PSI-biol 96.3 0.0025 8.6E-08 49.6 3.4 26 28-53 18-43 (202)
277 2bbw_A Adenylate kinase 4, AK4 96.3 0.0027 9.2E-08 51.2 3.6 27 28-54 27-53 (246)
278 4gp7_A Metallophosphoesterase; 96.3 0.002 7E-08 49.0 2.8 20 29-48 10-29 (171)
279 2rcn_A Probable GTPase ENGC; Y 96.3 0.0018 6.3E-08 55.3 2.7 22 30-51 217-238 (358)
280 2f1r_A Molybdopterin-guanine d 96.3 0.0012 4.1E-08 50.4 1.4 22 29-50 3-24 (171)
281 3vaa_A Shikimate kinase, SK; s 96.3 0.0029 9.9E-08 49.3 3.6 27 27-53 24-50 (199)
282 1uf9_A TT1252 protein; P-loop, 96.3 0.0032 1.1E-07 48.8 3.8 26 26-51 6-31 (203)
283 1y63_A LMAJ004144AAA protein; 96.2 0.0035 1.2E-07 48.2 4.0 25 27-51 9-33 (184)
284 1xjc_A MOBB protein homolog; s 96.2 0.0029 9.8E-08 48.2 3.4 24 27-50 3-26 (169)
285 4ido_A Atlastin-1; GTPase, GTP 96.2 0.012 3.9E-07 51.9 7.3 26 25-50 64-89 (457)
286 3lw7_A Adenylate kinase relate 96.2 0.0033 1.1E-07 47.2 3.4 24 29-53 2-25 (179)
287 2if2_A Dephospho-COA kinase; a 96.1 0.0033 1.1E-07 48.9 3.4 22 29-50 2-23 (204)
288 3umf_A Adenylate kinase; rossm 96.1 0.0046 1.6E-07 49.1 4.2 36 20-55 21-56 (217)
289 1nks_A Adenylate kinase; therm 96.1 0.004 1.4E-07 47.7 3.8 24 29-52 2-25 (194)
290 3tif_A Uncharacterized ABC tra 96.1 0.0021 7.1E-08 51.7 2.2 21 30-50 33-53 (235)
291 1htw_A HI0065; nucleotide-bind 96.1 0.0034 1.2E-07 47.2 3.2 24 29-52 34-57 (158)
292 1qf9_A UMP/CMP kinase, protein 96.1 0.0051 1.7E-07 47.1 4.3 26 28-53 6-31 (194)
293 2eyu_A Twitching motility prot 96.1 0.0032 1.1E-07 51.5 3.3 23 29-51 26-48 (261)
294 1ly1_A Polynucleotide kinase; 96.1 0.0038 1.3E-07 47.3 3.4 22 29-50 3-24 (181)
295 2yv5_A YJEQ protein; hydrolase 96.1 0.0032 1.1E-07 52.6 3.1 21 29-49 166-186 (302)
296 2pcj_A ABC transporter, lipopr 96.1 0.0025 8.7E-08 50.8 2.4 21 30-50 32-52 (224)
297 2v9p_A Replication protein E1; 96.1 0.0034 1.2E-07 52.5 3.2 23 29-51 127-149 (305)
298 2rhm_A Putative kinase; P-loop 96.1 0.0049 1.7E-07 47.3 3.9 26 28-53 5-30 (193)
299 1jny_A EF-1-alpha, elongation 96.0 0.00098 3.4E-08 58.7 -0.2 55 201-255 6-77 (435)
300 2bdt_A BH3686; alpha-beta prot 96.0 0.0041 1.4E-07 47.8 3.4 21 30-50 4-24 (189)
301 3b85_A Phosphate starvation-in 96.0 0.0035 1.2E-07 49.4 3.0 22 30-51 24-45 (208)
302 3uie_A Adenylyl-sulfate kinase 96.0 0.0048 1.6E-07 48.0 3.8 26 27-52 24-49 (200)
303 1cke_A CK, MSSA, protein (cyti 96.0 0.0043 1.5E-07 49.1 3.5 25 29-53 6-30 (227)
304 2onk_A Molybdate/tungstate ABC 96.0 0.0033 1.1E-07 50.7 2.7 22 29-50 25-46 (240)
305 2i3b_A HCR-ntpase, human cance 96.0 0.004 1.4E-07 48.3 2.9 22 30-51 3-24 (189)
306 3aez_A Pantothenate kinase; tr 95.9 0.0049 1.7E-07 51.8 3.7 26 26-51 88-113 (312)
307 3trf_A Shikimate kinase, SK; a 95.9 0.0048 1.6E-07 47.2 3.4 26 28-53 5-30 (185)
308 2cbz_A Multidrug resistance-as 95.9 0.0032 1.1E-07 50.7 2.4 21 30-50 33-53 (237)
309 2jeo_A Uridine-cytidine kinase 95.9 0.0056 1.9E-07 49.3 3.8 27 27-53 24-50 (245)
310 1qhx_A CPT, protein (chloramph 95.9 0.0056 1.9E-07 46.4 3.6 25 29-53 4-28 (178)
311 3tqc_A Pantothenate kinase; bi 95.9 0.0058 2E-07 51.5 3.9 26 26-51 90-115 (321)
312 1zd8_A GTP:AMP phosphotransfer 95.9 0.0057 1.9E-07 48.6 3.7 27 27-53 6-32 (227)
313 1nij_A Hypothetical protein YJ 95.9 0.0055 1.9E-07 51.5 3.7 25 27-51 3-27 (318)
314 1gvn_B Zeta; postsegregational 95.9 0.0067 2.3E-07 50.2 4.2 27 26-52 31-57 (287)
315 3cm0_A Adenylate kinase; ATP-b 95.9 0.0063 2.2E-07 46.5 3.8 26 28-53 4-29 (186)
316 1odf_A YGR205W, hypothetical 3 95.9 0.006 2E-07 50.7 3.8 25 26-50 29-53 (290)
317 1mv5_A LMRA, multidrug resista 95.9 0.0035 1.2E-07 50.6 2.4 21 30-50 30-50 (243)
318 3ec2_A DNA replication protein 95.9 0.0048 1.7E-07 47.0 3.1 25 27-51 37-61 (180)
319 3gfo_A Cobalt import ATP-bindi 95.8 0.0033 1.1E-07 51.8 2.2 21 30-50 36-56 (275)
320 1sgw_A Putative ABC transporte 95.8 0.0034 1.2E-07 49.8 2.2 21 30-50 37-57 (214)
321 2qt1_A Nicotinamide riboside k 95.8 0.0056 1.9E-07 47.8 3.5 25 27-51 20-44 (207)
322 2pze_A Cystic fibrosis transme 95.8 0.0036 1.2E-07 50.1 2.4 21 30-50 36-56 (229)
323 2ff7_A Alpha-hemolysin translo 95.8 0.0036 1.2E-07 50.7 2.4 21 30-50 37-57 (247)
324 2jaq_A Deoxyguanosine kinase; 95.8 0.0055 1.9E-07 47.4 3.4 24 30-53 2-25 (205)
325 4dzz_A Plasmid partitioning pr 95.8 0.011 3.6E-07 45.9 5.1 35 94-130 75-109 (206)
326 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0045 1.5E-07 50.2 2.9 22 30-51 31-52 (250)
327 1b0u_A Histidine permease; ABC 95.8 0.0034 1.2E-07 51.4 2.2 21 30-50 34-54 (262)
328 1jjv_A Dephospho-COA kinase; P 95.8 0.0051 1.7E-07 48.0 3.2 22 29-50 3-24 (206)
329 4g1u_C Hemin import ATP-bindin 95.8 0.0033 1.1E-07 51.6 2.1 21 30-50 39-59 (266)
330 1u0l_A Probable GTPase ENGC; p 95.8 0.0044 1.5E-07 51.7 2.9 23 29-51 170-192 (301)
331 1tev_A UMP-CMP kinase; ploop, 95.8 0.006 2.1E-07 46.8 3.5 26 28-53 3-28 (196)
332 3lnc_A Guanylate kinase, GMP k 95.8 0.0036 1.2E-07 49.9 2.3 23 29-51 28-51 (231)
333 1g6h_A High-affinity branched- 95.8 0.0035 1.2E-07 51.1 2.2 21 30-50 35-55 (257)
334 2c95_A Adenylate kinase 1; tra 95.8 0.0064 2.2E-07 46.8 3.7 27 27-53 8-34 (196)
335 3tlx_A Adenylate kinase 2; str 95.8 0.0066 2.2E-07 48.9 3.8 27 27-53 28-54 (243)
336 1rz3_A Hypothetical protein rb 95.8 0.0073 2.5E-07 47.0 4.0 25 26-50 20-44 (201)
337 1via_A Shikimate kinase; struc 95.8 0.0053 1.8E-07 46.6 3.1 25 29-53 5-29 (175)
338 3fb4_A Adenylate kinase; psych 95.8 0.0063 2.1E-07 47.8 3.5 25 30-54 2-26 (216)
339 1zak_A Adenylate kinase; ATP:A 95.8 0.006 2E-07 48.2 3.4 27 27-53 4-30 (222)
340 2cdn_A Adenylate kinase; phosp 95.8 0.0071 2.4E-07 47.0 3.8 28 26-53 18-45 (201)
341 2ghi_A Transport protein; mult 95.8 0.0041 1.4E-07 50.8 2.4 22 30-51 48-69 (260)
342 1rj9_A FTSY, signal recognitio 95.8 0.0063 2.1E-07 50.9 3.6 25 27-51 101-125 (304)
343 2zu0_C Probable ATP-dependent 95.7 0.005 1.7E-07 50.5 2.9 22 30-51 48-69 (267)
344 3dl0_A Adenylate kinase; phosp 95.7 0.007 2.4E-07 47.5 3.7 24 30-53 2-25 (216)
345 1ji0_A ABC transporter; ATP bi 95.7 0.0043 1.5E-07 50.0 2.4 21 30-50 34-54 (240)
346 1zun_B Sulfate adenylate trans 95.7 0.0023 7.8E-08 56.3 0.8 55 201-255 24-97 (434)
347 4a74_A DNA repair and recombin 95.7 0.0061 2.1E-07 48.1 3.2 21 30-50 27-47 (231)
348 1aky_A Adenylate kinase; ATP:A 95.7 0.0067 2.3E-07 47.9 3.5 27 27-53 3-29 (220)
349 2olj_A Amino acid ABC transpor 95.7 0.0044 1.5E-07 50.7 2.4 21 30-50 52-72 (263)
350 1sq5_A Pantothenate kinase; P- 95.7 0.0076 2.6E-07 50.4 3.9 26 26-51 78-103 (308)
351 2ixe_A Antigen peptide transpo 95.7 0.0045 1.5E-07 50.9 2.4 21 30-50 47-67 (271)
352 1kht_A Adenylate kinase; phosp 95.7 0.0071 2.4E-07 46.3 3.4 24 29-52 4-27 (192)
353 1vpl_A ABC transporter, ATP-bi 95.7 0.0046 1.6E-07 50.4 2.4 21 30-50 43-63 (256)
354 2gza_A Type IV secretion syste 95.7 0.0051 1.8E-07 52.7 2.8 23 29-51 176-198 (361)
355 2qi9_C Vitamin B12 import ATP- 95.7 0.0047 1.6E-07 50.1 2.4 21 30-50 28-48 (249)
356 1uj2_A Uridine-cytidine kinase 95.7 0.008 2.7E-07 48.6 3.8 30 25-54 19-48 (252)
357 4e22_A Cytidylate kinase; P-lo 95.6 0.0079 2.7E-07 48.8 3.7 26 28-53 27-52 (252)
358 3jvv_A Twitching mobility prot 95.6 0.0065 2.2E-07 52.0 3.3 22 30-51 125-146 (356)
359 2dy1_A Elongation factor G; tr 95.6 0.0076 2.6E-07 55.9 4.0 57 199-255 7-67 (665)
360 2plr_A DTMP kinase, probable t 95.6 0.0083 2.9E-07 46.7 3.7 25 29-53 5-29 (213)
361 2ehv_A Hypothetical protein PH 95.6 0.0059 2E-07 48.9 2.9 20 30-49 32-51 (251)
362 2ze6_A Isopentenyl transferase 95.6 0.0077 2.6E-07 48.9 3.5 25 29-53 2-26 (253)
363 2ihy_A ABC transporter, ATP-bi 95.6 0.0049 1.7E-07 50.9 2.4 21 30-50 49-69 (279)
364 2wwf_A Thymidilate kinase, put 95.6 0.0092 3.1E-07 46.5 3.9 25 27-51 9-33 (212)
365 2vli_A Antibiotic resistance p 95.6 0.0063 2.2E-07 46.3 2.8 26 28-53 5-30 (183)
366 2kjq_A DNAA-related protein; s 95.6 0.0066 2.3E-07 45.1 2.8 23 29-51 37-59 (149)
367 2yz2_A Putative ABC transporte 95.6 0.0053 1.8E-07 50.3 2.4 21 30-50 35-55 (266)
368 2nq2_C Hypothetical ABC transp 95.6 0.0053 1.8E-07 49.9 2.3 21 30-50 33-53 (253)
369 2bwj_A Adenylate kinase 5; pho 95.5 0.0081 2.8E-07 46.3 3.3 26 28-53 12-37 (199)
370 3b9q_A Chloroplast SRP recepto 95.5 0.011 3.9E-07 49.3 4.3 26 26-51 98-123 (302)
371 3nh6_A ATP-binding cassette SU 95.5 0.0034 1.2E-07 52.6 1.0 21 30-50 82-102 (306)
372 2yvu_A Probable adenylyl-sulfa 95.5 0.012 4.2E-07 45.0 4.2 25 27-51 12-36 (186)
373 2p5t_B PEZT; postsegregational 95.5 0.0081 2.8E-07 48.7 3.3 28 26-53 30-57 (253)
374 1lw7_A Transcriptional regulat 95.5 0.0044 1.5E-07 53.1 1.6 25 28-52 170-194 (365)
375 2v54_A DTMP kinase, thymidylat 95.5 0.0094 3.2E-07 46.2 3.4 24 28-51 4-27 (204)
376 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.0055 1.9E-07 51.9 2.2 23 29-51 172-194 (330)
377 1f60_A Elongation factor EEF1A 95.5 0.0029 9.8E-08 56.1 0.4 55 201-255 7-78 (458)
378 2ewv_A Twitching motility prot 95.5 0.0079 2.7E-07 51.8 3.2 24 28-51 136-159 (372)
379 2pjz_A Hypothetical protein ST 95.4 0.0066 2.3E-07 49.7 2.4 22 30-51 32-53 (263)
380 3e70_C DPA, signal recognition 95.4 0.011 3.8E-07 49.9 3.8 26 26-51 127-152 (328)
381 2bbs_A Cystic fibrosis transme 95.4 0.0071 2.4E-07 50.2 2.6 21 30-50 66-86 (290)
382 1e6c_A Shikimate kinase; phosp 95.4 0.0091 3.1E-07 44.9 3.0 25 29-53 3-27 (173)
383 3tui_C Methionine import ATP-b 95.4 0.0074 2.5E-07 51.7 2.7 21 30-50 56-76 (366)
384 3fvq_A Fe(3+) IONS import ATP- 95.4 0.0079 2.7E-07 51.4 2.9 22 30-51 32-53 (359)
385 3be4_A Adenylate kinase; malar 95.4 0.011 3.8E-07 46.6 3.6 27 27-53 4-30 (217)
386 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0093 3.2E-07 48.5 3.2 24 28-51 4-27 (260)
387 2f6r_A COA synthase, bifunctio 95.4 0.021 7.1E-07 47.1 5.3 25 26-50 73-97 (281)
388 1vht_A Dephospho-COA kinase; s 95.3 0.01 3.6E-07 46.6 3.3 23 28-50 4-26 (218)
389 1gtv_A TMK, thymidylate kinase 95.3 0.005 1.7E-07 48.2 1.4 22 30-51 2-23 (214)
390 2pt5_A Shikimate kinase, SK; a 95.3 0.011 3.9E-07 44.2 3.3 24 30-53 2-25 (168)
391 1e4v_A Adenylate kinase; trans 95.3 0.012 4E-07 46.2 3.5 24 30-53 2-25 (214)
392 3a8t_A Adenylate isopentenyltr 95.3 0.011 3.9E-07 49.9 3.5 27 27-53 39-65 (339)
393 3zvl_A Bifunctional polynucleo 95.3 0.018 6.2E-07 50.3 4.9 31 23-53 253-283 (416)
394 2iyv_A Shikimate kinase, SK; t 95.3 0.01 3.5E-07 45.3 2.9 25 29-53 3-27 (184)
395 1z47_A CYSA, putative ABC-tran 95.2 0.0091 3.1E-07 51.0 2.7 22 30-51 43-64 (355)
396 3kta_A Chromosome segregation 95.2 0.012 4.1E-07 44.8 3.2 23 30-52 28-50 (182)
397 1p9r_A General secretion pathw 95.2 0.011 3.9E-07 51.6 3.3 23 30-52 169-191 (418)
398 2og2_A Putative signal recogni 95.2 0.016 5.6E-07 49.5 4.2 26 26-51 155-180 (359)
399 1ak2_A Adenylate kinase isoenz 95.2 0.013 4.6E-07 46.6 3.5 27 27-53 15-41 (233)
400 2oap_1 GSPE-2, type II secreti 95.2 0.0086 3E-07 53.7 2.6 23 29-51 261-283 (511)
401 2yyz_A Sugar ABC transporter, 95.1 0.0097 3.3E-07 50.9 2.7 22 30-51 31-52 (359)
402 3rlf_A Maltose/maltodextrin im 95.1 0.0098 3.3E-07 51.3 2.7 22 30-51 31-52 (381)
403 1jbk_A CLPB protein; beta barr 95.1 0.015 5.2E-07 43.9 3.6 25 27-51 42-66 (195)
404 2pbr_A DTMP kinase, thymidylat 95.1 0.014 4.6E-07 44.8 3.3 22 30-51 2-23 (195)
405 3sr0_A Adenylate kinase; phosp 95.1 0.014 4.9E-07 45.8 3.4 26 30-55 2-27 (206)
406 2it1_A 362AA long hypothetical 95.1 0.01 3.4E-07 50.9 2.7 22 30-51 31-52 (362)
407 3r20_A Cytidylate kinase; stru 95.1 0.014 4.7E-07 46.8 3.3 27 27-53 8-34 (233)
408 1zuh_A Shikimate kinase; alpha 95.1 0.014 4.9E-07 43.7 3.3 27 27-53 6-32 (168)
409 3szr_A Interferon-induced GTP- 95.1 0.0063 2.2E-07 55.9 1.5 23 29-51 46-68 (608)
410 1g29_1 MALK, maltose transport 95.1 0.01 3.6E-07 51.0 2.7 22 30-51 31-52 (372)
411 1v43_A Sugar-binding transport 95.0 0.011 3.7E-07 50.9 2.7 22 30-51 39-60 (372)
412 2pez_A Bifunctional 3'-phospho 95.0 0.017 5.7E-07 43.9 3.5 24 28-51 5-28 (179)
413 2vp4_A Deoxynucleoside kinase; 95.0 0.012 4E-07 47.0 2.7 26 26-51 18-43 (230)
414 2z0h_A DTMP kinase, thymidylat 94.9 0.015 5.2E-07 44.6 3.2 22 30-51 2-23 (197)
415 3gd7_A Fusion complex of cysti 94.9 0.013 4.4E-07 50.7 2.9 22 30-51 49-70 (390)
416 3b9p_A CG5977-PA, isoform A; A 94.9 0.076 2.6E-06 43.6 7.5 24 28-51 54-77 (297)
417 3p26_A Elongation factor 1 alp 94.9 0.01 3.5E-07 52.9 2.3 56 201-256 33-105 (483)
418 2xb4_A Adenylate kinase; ATP-b 94.8 0.018 6.1E-07 45.6 3.4 24 30-53 2-25 (223)
419 1ixz_A ATP-dependent metallopr 94.8 0.018 6.1E-07 46.4 3.5 22 30-51 51-72 (254)
420 3nwj_A ATSK2; P loop, shikimat 94.8 0.016 5.5E-07 47.0 3.1 26 28-53 48-73 (250)
421 2x8a_A Nuclear valosin-contain 94.8 0.017 5.9E-07 47.4 3.3 23 30-52 46-68 (274)
422 3foz_A TRNA delta(2)-isopenten 94.8 0.023 8E-07 47.4 4.1 26 28-53 10-35 (316)
423 3pfi_A Holliday junction ATP-d 94.8 0.036 1.2E-06 46.5 5.3 24 28-51 55-78 (338)
424 1m7g_A Adenylylsulfate kinase; 94.8 0.022 7.6E-07 44.5 3.8 25 27-51 24-48 (211)
425 3d3q_A TRNA delta(2)-isopenten 94.7 0.023 7.9E-07 48.1 3.9 25 29-53 8-32 (340)
426 2npi_A Protein CLP1; CLP1-PCF1 94.7 0.016 5.6E-07 51.2 3.1 23 29-51 139-161 (460)
427 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.017 5.9E-07 45.4 3.0 21 30-50 25-45 (235)
428 4b4t_L 26S protease subunit RP 94.7 0.058 2E-06 47.3 6.5 27 27-53 214-240 (437)
429 3d31_A Sulfate/molybdate ABC t 94.7 0.0092 3.1E-07 50.8 1.4 22 30-51 28-49 (348)
430 3crm_A TRNA delta(2)-isopenten 94.6 0.029 1E-06 47.2 4.2 25 29-53 6-30 (323)
431 2c78_A Elongation factor TU-A; 94.6 0.017 5.9E-07 50.1 2.9 55 201-255 11-68 (405)
432 1in4_A RUVB, holliday junction 94.6 0.019 6.6E-07 48.5 3.1 24 29-52 52-75 (334)
433 1cr0_A DNA primase/helicase; R 94.5 0.021 7.2E-07 47.2 3.2 22 30-51 37-58 (296)
434 4eaq_A DTMP kinase, thymidylat 94.5 0.031 1.1E-06 44.6 4.1 27 27-53 25-51 (229)
435 1q3t_A Cytidylate kinase; nucl 94.5 0.025 8.7E-07 45.1 3.6 28 26-53 14-41 (236)
436 2grj_A Dephospho-COA kinase; T 94.5 0.032 1.1E-06 43.3 4.0 27 27-53 11-37 (192)
437 1f2t_A RAD50 ABC-ATPase; DNA d 94.5 0.021 7.2E-07 42.3 2.8 21 30-50 25-45 (149)
438 1iy2_A ATP-dependent metallopr 94.5 0.023 7.9E-07 46.5 3.2 22 30-51 75-96 (278)
439 2w58_A DNAI, primosome compone 94.5 0.026 8.8E-07 43.7 3.4 23 29-51 55-77 (202)
440 2p65_A Hypothetical protein PF 94.4 0.02 6.8E-07 43.2 2.6 25 27-51 42-66 (187)
441 1oxx_K GLCV, glucose, ABC tran 94.4 0.009 3.1E-07 51.0 0.7 22 30-51 33-54 (353)
442 1lv7_A FTSH; alpha/beta domain 94.4 0.028 9.6E-07 45.3 3.6 24 28-51 45-68 (257)
443 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.12 4.2E-06 43.3 7.6 24 28-51 45-68 (322)
444 2obl_A ESCN; ATPase, hydrolase 94.3 0.026 9E-07 48.0 3.4 23 30-52 73-95 (347)
445 3qf7_A RAD50; ABC-ATPase, ATPa 94.3 0.023 8E-07 48.6 3.0 20 31-50 26-45 (365)
446 3bos_A Putative DNA replicatio 94.3 0.028 9.7E-07 44.3 3.4 24 28-51 52-75 (242)
447 1a7j_A Phosphoribulokinase; tr 94.3 0.019 6.3E-07 47.7 2.3 25 27-51 4-28 (290)
448 1vma_A Cell division protein F 94.3 0.038 1.3E-06 46.1 4.2 26 26-51 102-127 (306)
449 2cvh_A DNA repair and recombin 94.2 0.027 9.1E-07 44.0 3.0 21 30-50 22-42 (220)
450 2px0_A Flagellar biosynthesis 94.2 0.03 1E-06 46.5 3.5 24 27-50 104-127 (296)
451 3euj_A Chromosome partition pr 94.2 0.027 9.1E-07 50.1 3.2 24 29-52 30-53 (483)
452 3vfd_A Spastin; ATPase, microt 94.2 0.15 5E-06 43.9 7.8 24 28-51 148-171 (389)
453 1ltq_A Polynucleotide kinase; 94.1 0.032 1.1E-06 46.1 3.4 23 29-51 3-25 (301)
454 3exa_A TRNA delta(2)-isopenten 94.1 0.037 1.3E-06 46.4 3.7 25 29-53 4-28 (322)
455 3b60_A Lipid A export ATP-bind 94.1 0.022 7.5E-07 52.0 2.6 21 30-50 371-391 (582)
456 1n0w_A DNA repair protein RAD5 94.1 0.029 9.9E-07 44.5 3.0 22 30-51 26-47 (243)
457 3b5x_A Lipid A export ATP-bind 94.1 0.024 8.3E-07 51.7 2.8 21 30-50 371-391 (582)
458 1svm_A Large T antigen; AAA+ f 94.0 0.033 1.1E-06 48.0 3.4 23 28-50 169-191 (377)
459 3izq_1 HBS1P, elongation facto 94.0 0.012 4.1E-07 54.0 0.7 55 201-255 167-238 (611)
460 3ake_A Cytidylate kinase; CMP 94.0 0.035 1.2E-06 42.9 3.3 24 30-53 4-27 (208)
461 2qmh_A HPR kinase/phosphorylas 94.0 0.035 1.2E-06 43.3 3.1 25 29-53 35-59 (205)
462 1yqt_A RNAse L inhibitor; ATP- 94.0 0.027 9.3E-07 50.8 2.9 21 30-50 49-69 (538)
463 3d8b_A Fidgetin-like protein 1 94.0 0.092 3.1E-06 44.7 6.1 25 27-51 116-140 (357)
464 2dpy_A FLII, flagellum-specifi 93.9 0.034 1.2E-06 48.9 3.4 23 30-52 159-181 (438)
465 2ocp_A DGK, deoxyguanosine kin 93.9 0.043 1.5E-06 43.8 3.8 25 28-52 2-26 (241)
466 2yl4_A ATP-binding cassette SU 93.8 0.022 7.6E-07 52.1 2.1 21 30-50 372-392 (595)
467 4b4t_K 26S protease regulatory 93.8 0.12 4.1E-06 45.2 6.6 27 27-53 205-231 (428)
468 1p5z_B DCK, deoxycytidine kina 93.8 0.022 7.6E-07 46.2 1.8 26 26-51 22-47 (263)
469 3qf4_B Uncharacterized ABC tra 93.8 0.024 8.1E-07 51.9 2.2 21 30-50 383-403 (598)
470 1zcb_A G alpha I/13; GTP-bindi 93.8 0.037 1.3E-06 47.3 3.3 23 26-48 31-53 (362)
471 1hqc_A RUVB; extended AAA-ATPa 93.7 0.076 2.6E-06 44.1 5.1 22 29-50 39-60 (324)
472 4b4t_M 26S protease regulatory 93.7 0.11 3.7E-06 45.5 6.2 27 27-53 214-240 (434)
473 3cwq_A Para family chromosome 93.7 0.18 6.3E-06 39.2 7.0 35 94-130 67-102 (209)
474 3t15_A Ribulose bisphosphate c 93.7 0.064 2.2E-06 44.3 4.5 26 27-52 35-60 (293)
475 1nlf_A Regulatory protein REPA 93.5 0.044 1.5E-06 44.9 3.2 21 30-50 32-52 (279)
476 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.057 2E-06 43.3 3.8 26 26-51 37-62 (262)
477 2chg_A Replication factor C sm 93.5 0.046 1.6E-06 42.3 3.2 22 29-50 39-60 (226)
478 3ozx_A RNAse L inhibitor; ATP 93.5 0.029 9.9E-07 50.7 2.2 22 29-50 26-47 (538)
479 3j16_B RLI1P; ribosome recycli 93.5 0.038 1.3E-06 50.7 2.9 21 30-50 105-125 (608)
480 3h4m_A Proteasome-activating n 93.5 0.054 1.8E-06 44.2 3.6 25 27-51 50-74 (285)
481 2h92_A Cytidylate kinase; ross 93.4 0.05 1.7E-06 42.6 3.3 25 29-53 4-28 (219)
482 3k9g_A PF-32 protein; ssgcid, 93.4 0.28 9.4E-06 39.6 7.8 35 94-130 144-178 (267)
483 4a82_A Cystic fibrosis transme 93.4 0.02 7E-07 52.1 1.1 21 30-50 369-389 (578)
484 3ld9_A DTMP kinase, thymidylat 93.3 0.064 2.2E-06 42.6 3.7 28 24-51 17-44 (223)
485 4f4c_A Multidrug resistance pr 93.3 0.026 8.9E-07 56.4 1.7 21 30-50 1107-1127(1321)
486 3syl_A Protein CBBX; photosynt 93.2 0.064 2.2E-06 44.3 3.8 25 27-51 66-90 (309)
487 1njg_A DNA polymerase III subu 93.2 0.057 1.9E-06 42.3 3.3 23 29-51 46-68 (250)
488 3tqf_A HPR(Ser) kinase; transf 93.2 0.057 2E-06 41.1 3.1 23 29-51 17-39 (181)
489 4b4t_J 26S protease regulatory 93.2 0.14 4.9E-06 44.3 6.0 27 27-53 181-207 (405)
490 3qf4_A ABC transporter, ATP-bi 93.2 0.025 8.5E-07 51.7 1.3 21 30-50 371-391 (587)
491 2ga8_A Hypothetical 39.9 kDa p 93.2 0.073 2.5E-06 45.3 4.1 27 26-52 22-48 (359)
492 1d2n_A N-ethylmaleimide-sensit 93.2 0.076 2.6E-06 43.1 4.1 26 26-51 62-87 (272)
493 2zan_A Vacuolar protein sortin 93.2 0.23 7.7E-06 43.6 7.4 24 28-51 167-190 (444)
494 1fnn_A CDC6P, cell division co 93.1 0.057 1.9E-06 46.0 3.4 24 29-52 45-68 (389)
495 3bk7_A ABC transporter ATP-bin 93.1 0.039 1.3E-06 50.6 2.4 21 30-50 119-139 (607)
496 1yqt_A RNAse L inhibitor; ATP- 93.1 0.047 1.6E-06 49.3 2.9 22 30-51 314-335 (538)
497 2qby_A CDC6 homolog 1, cell di 93.0 0.06 2.1E-06 45.6 3.4 25 27-51 44-68 (386)
498 3cf0_A Transitional endoplasmi 93.0 0.067 2.3E-06 44.3 3.6 25 28-52 49-73 (301)
499 3ozx_A RNAse L inhibitor; ATP 92.9 0.042 1.5E-06 49.6 2.4 21 30-50 296-316 (538)
500 1sxj_E Activator 1 40 kDa subu 92.9 0.053 1.8E-06 45.8 2.9 24 27-50 35-58 (354)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.94 E-value=4.4e-26 Score=202.60 Aligned_cols=194 Identities=23% Similarity=0.297 Sum_probs=147.4
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLR 85 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~ 85 (257)
.+.....+|+++|++|+|||||+++|++..+.+... +.++++|.++.|+++|+|++.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 344567899999999999999999999887766543 346789999999999999998888877
Q ss_pred eecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------c
Q psy12244 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------V 131 (257)
Q Consensus 86 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~ 131 (257)
+.. +.++|||||||++|..++..+++.+|++|||+|+++ +
T Consensus 92 ~~~------~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 92 TEK------KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred cCC------eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 766 799999999999999999999999999999999963 7
Q ss_pred CCCCCC-----HHHHHHHHHHHh---CCC---ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCC
Q psy12244 132 DLKNAN-----PEACEEQLQTLF---NID---KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKAT 191 (257)
Q Consensus 132 D~~~~~-----~~~~~~~~~~~~---~~~---~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~ 191 (257)
|+...+ .++..+++..++ ++. ..+++++||++|.|++++.+. ++||.+ ++.+.....
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~---~~w~~g~~L~~~l~~i~~~~~~~~ 242 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDF---CPWYIGLPFIPYLDNLPNFNRSVD 242 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccccc---ccccCchHHHHHHHhCCCCccCCC
Confidence 764322 334444444443 443 467999999999999997763 335544 233334444
Q ss_pred CCCCcchhhh---cceeeEeeecccchhhHHHHHHhh
Q psy12244 192 PYEDIPIARI---RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 192 ~~~~~~~~~~---~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+..+++.+. .+.++.|++.+|....++.+...+
T Consensus 243 ~p~r~~v~~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p 279 (439)
T 3j2k_7 243 GPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMP 279 (439)
T ss_pred CCeEEEEEEEEcCCCeEEEEEEEeeEEecCCEEEEcc
Confidence 4555665432 457788999999988888876544
No 2
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.92 E-value=2.5e-25 Score=203.17 Aligned_cols=194 Identities=39% Similarity=0.619 Sum_probs=133.9
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
+.++.+||+|+|++|+|||||+++|++.++.+... ...+++|.+..|+++|+|+......+.|... ++..+.++||||
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~-dg~~~~inliDT 80 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK-DGNTYKLHLIDT 80 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT-TSCEEEEEEECC
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC-CCCeEEEEEEEC
Confidence 45688999999999999999999999877766443 2456788999999999999988888877631 345589999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
|||.+|...+..+++.+|++|+|+|+++ +|+..++.++..+++++.++....++
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~v 160 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEA 160 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGC
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccE
Confidence 9999999999999999999999999987 89988888888888888888766679
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHHHH
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
+++||++|.|+++++++|... ++.|......+.... .+..++.+..|++.+|....++.+..
T Consensus 161 i~vSAktg~GI~~Lle~I~~~-----lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~ 227 (600)
T 2ywe_A 161 ILASAKEGIGIEEILEAIVNR-----IPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIML 227 (600)
T ss_dssp EECBTTTTBSHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEE
T ss_pred EEEEeecCCCchHHHHHHHHh-----cccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEe
Confidence 999999999999999887632 222222222222211 12345777778888888887776643
No 3
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.92 E-value=8.7e-25 Score=199.87 Aligned_cols=190 Identities=42% Similarity=0.680 Sum_probs=125.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
++.+||+|+|++|+|||||+++|++.++.+... ...+++|.+..|+++|+|+......+.|... ++..+.++||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~-~g~~~~l~liDTPG 80 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS-DGETYQLNFIDTPG 80 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT-TSCEEEEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC-CCCeEEEEEEECCC
Confidence 468999999999999999999999987766543 2456788899999999999988888888631 34558999999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceEE
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLR 158 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (257)
|.+|...+..+++.+|++|+|+|+++ +|+..++.++..+++++.++....++++
T Consensus 81 h~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 160 (599)
T 3cb4_D 81 HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR 160 (599)
T ss_dssp CGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEE
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEE
Confidence 99999999999999999999999987 8998888888888898888876667999
Q ss_pred ecccccccccccccccCCCcccCCCCCCCCCCCCCCCcch-----hhhcceeeEeeecccchhhHHHH
Q psy12244 159 IWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI-----ARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
+||++|.|++++++.|... ++.|......+....+ +...+.+..+++-+|....++.+
T Consensus 161 vSAktg~GI~~Ll~~I~~~-----lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 161 CSAKTGVGVQDVLERLVRD-----IPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp ECTTTCTTHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred eecccCCCchhHHHHHhhc-----CCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 9999999999999887632 2222222222222211 23456667777888877766654
No 4
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.91 E-value=8.8e-26 Score=208.92 Aligned_cols=184 Identities=24% Similarity=0.382 Sum_probs=144.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
++|||+|+||+++|||||+.+|++.++.+.+. +..+++|..+.|++||+|+......+.|++ +.++||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~------~~iNlIDT 74 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN------TKVNIIDT 74 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS------CBCCCEEC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC------EEEEEEEC
Confidence 57899999999999999999999999988664 567789999999999999999999999987 89999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC-----
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI----- 151 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~----- 151 (257)
|||.||..++.++++.+|++|+||||.+ ||+..+++....+++++.++.
T Consensus 75 PGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~ 154 (638)
T 3j25_A 75 PGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK 154 (638)
T ss_dssp CCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCC
T ss_pred CCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999999998 898888888887777765532
Q ss_pred --------------------------------------------------------CccceEEecccccccccccccccC
Q psy12244 152 --------------------------------------------------------DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 --------------------------------------------------------~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...|++..||+++.|++.|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~ 234 (638)
T 3j25_A 155 QKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVIT 234 (638)
T ss_dssp CCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHH
T ss_pred ceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhh
Confidence 123678889999999999998886
Q ss_pred CCcccCCCCCCCCCCCCCC-----CcchhhhcceeeEeeecccchhhHHHH
Q psy12244 176 STNLNDGLAKPDSKATPYE-----DIPIARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
.. ++.|......+. ....+..++....+++-+|....++.+
T Consensus 235 ~~-----~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v 280 (638)
T 3j25_A 235 NK-----FYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSV 280 (638)
T ss_dssp HS-----CCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCS
T ss_pred cc-----ccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCcc
Confidence 32 222221111111 111233455556677777766655554
No 5
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=6.8e-24 Score=188.44 Aligned_cols=195 Identities=18% Similarity=0.279 Sum_probs=136.9
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceee
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTA 82 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~ 82 (257)
.......++|+++|++|+|||||+++|++..+.+... ...+.+|.++.|+++|+|++....
T Consensus 18 ~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 18 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred hcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 3334567899999999999999999999876544221 122457888899999999998777
Q ss_pred EEEeecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCC
Q psy12244 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKN 135 (257)
Q Consensus 83 ~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~ 135 (257)
.+.+.. ..++|||||||++|..++..+++.+|++|+|+|+++ +|+.+
T Consensus 98 ~~~~~~------~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 98 YFSTAK------RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEECSS------EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred EeecCC------ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 766655 789999999999999999999999999999999986 78866
Q ss_pred CCH---HHHHHHHHHHh---C--CCccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcch
Q psy12244 136 ANP---EACEEQLQTLF---N--IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPI 198 (257)
Q Consensus 136 ~~~---~~~~~~~~~~~---~--~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~ 198 (257)
++. +...+++.+++ + ....+++++||++|.|++++++.+ +||.+ ++.+......+..+++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~---~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v 248 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERS---PWYAGQSLMEILETVEIASDRNYTDLRFPV 248 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTC---TTCCSCCTTHHHHHSCCTTCCCSSSCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccC---ccccCchHHHHHhcCCCcccCCCCCcEEEE
Confidence 442 23444555443 4 344689999999999999987653 46554 2233333334445555
Q ss_pred hhh-----cceeeEeeecccchhhHHHHHHhh
Q psy12244 199 ARI-----RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 199 ~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+. .+....|++.+|....++.+...+
T Consensus 249 ~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p 280 (434)
T 1zun_B 249 QYVNRPNLNFRGFAGTLASGIVHKGDEIVVLP 280 (434)
T ss_dssp CEEECSSSSCCEEEEECCBSCEETTCEEEETT
T ss_pred EEEeccCCCceEEEEEEecceEeCCCEEEEec
Confidence 432 223467899999999888876654
No 6
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.91 E-value=8.5e-25 Score=195.73 Aligned_cols=195 Identities=24% Similarity=0.266 Sum_probs=114.9
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEe
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRY 86 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 86 (257)
...+.++|+++|++|+|||||+++|++..+.+... ...+.+|..+.|+++|+|++.....+.+
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 34567899999999999999999999877654311 2356788899999999999988777776
Q ss_pred ecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cC
Q psy12244 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VD 132 (257)
Q Consensus 87 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D 132 (257)
.. ..++|||||||++|..++..+++.+|++|||+|+++ +|
T Consensus 119 ~~------~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~D 192 (467)
T 1r5b_A 119 EH------RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 192 (467)
T ss_dssp SS------EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred CC------eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECcc
Confidence 55 789999999999999999999999999999999863 78
Q ss_pred CCCCC-----HHHHHHHHHHHh----CCC---ccceEEecccccccccccccccCCCcccCCC---------CCCCCCCC
Q psy12244 133 LKNAN-----PEACEEQLQTLF----NID---KKSVLRIWHRRCFSCADCHRSLDSTNLNDGL---------AKPDSKAT 191 (257)
Q Consensus 133 ~~~~~-----~~~~~~~~~~~~----~~~---~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~---------~~~~~~~~ 191 (257)
+...+ ++...+++.+++ ++. ..+++++||++|.|++++++.. ..+||.+. +.+.+...
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~-~~~w~~g~~L~~~l~~i~~~~~~~~ 271 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS-VCPWYQGPSLLEYLDSMTHLERKVN 271 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTT-TCSSCCSCCHHHHHHHCCCCHHHHT
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccc-cCccccchhHHHHHHhCCCCcCCCC
Confidence 75422 233334444433 554 5679999999999999988532 34677652 22222222
Q ss_pred CCCCcchhh---hcceeeEeeecccchhhHHHHHHhh
Q psy12244 192 PYEDIPIAR---IRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 192 ~~~~~~~~~---~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+..+++.+ .++.++.|++.+|....++.+...+
T Consensus 272 ~p~~~~v~~~~~~~G~v~~G~v~~G~l~~gd~v~~~p 308 (467)
T 1r5b_A 272 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMP 308 (467)
T ss_dssp SCCEEECCEEEESSSEEEEEECCBSEEETTEEEEEET
T ss_pred CCcEEEEEEEEeCCCeEEEEEEeeeEEeeCCEEEEcc
Confidence 334455443 2567788999999988888876544
No 7
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.91 E-value=8.7e-25 Score=198.66 Aligned_cols=119 Identities=34% Similarity=0.595 Sum_probs=93.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
++.|||+|+||+++|||||..+|++.++.+... ...+++|+.+.|++||+|+......+.|++ +.+
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~------~~i 102 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD------RVV 102 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT------EEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC------EEE
Confidence 478999999999999999999999999887543 234789999999999999999999999988 999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+|||||||.||..++.++++.+|++|+||||.. ||+..+++.++.+++++.++
T Consensus 103 NlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 103 NLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp EEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 999999999999999999999999999999998 99999999988888887764
No 8
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.90 E-value=7.3e-24 Score=190.61 Aligned_cols=193 Identities=20% Similarity=0.218 Sum_probs=132.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeecc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTSI 89 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 89 (257)
...+|+++|++|+|||||+++|++..+.+... .++++.|....++++|+|++.....+.+..
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-
Confidence 46799999999999999999999886655321 356778999999999999998888777655
Q ss_pred cCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCC
Q psy12244 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKN 135 (257)
Q Consensus 90 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~ 135 (257)
+.++|||||||++|..++..+++.+|++|+|+|++. +|+.+
T Consensus 111 -----~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 -----ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp -----CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred -----ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 799999999999999999999999999999999964 77765
Q ss_pred CC---HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCCCC-------------C--CCCCCCC
Q psy12244 136 AN---PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLA-------------K--PDSKATP 192 (257)
Q Consensus 136 ~~---~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~-------------~--~~~~~~~ 192 (257)
++ .++..+++.+++ ++. ..+++++||++|+|++++.+.+...+||++.. . |......
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~ 265 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDD 265 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSS
T ss_pred chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCC
Confidence 43 333444444433 443 46799999999999998876543344555421 1 2333344
Q ss_pred CCCcchhhh--------cceeeEeeecccchhhHHHHHHhh
Q psy12244 193 YEDIPIARI--------RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 193 ~~~~~~~~~--------~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+..+++.+. .+.++.|++.+|....++.+...+
T Consensus 266 p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p 306 (483)
T 3p26_A 266 PFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYP 306 (483)
T ss_dssp CCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEET
T ss_pred ceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeC
Confidence 455665443 345678999999988888775544
No 9
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.90 E-value=2.3e-23 Score=185.98 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=140.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
....+|+++|++|+|||||+++|++..+.+... ++++++|..+.|+++|+|++.....+.+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 356899999999999999999999875443210 234567888899999999998887776655
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|||||||++|..++..+++.+|++|||+|+++ +|+.
T Consensus 85 ------~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 85 ------YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp ------EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred ------ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 789999999999999999999999999999999972 7776
Q ss_pred CCCH---HHHHHHHHHH---hCCC--ccceEEecccccccccccccccCCCcccCC---------------------CCC
Q psy12244 135 NANP---EACEEQLQTL---FNID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------------------LAK 185 (257)
Q Consensus 135 ~~~~---~~~~~~~~~~---~~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------------------~~~ 185 (257)
+++. +...++++++ +++. ..+++++||++|.|++++.+. .+||++ ++.
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~---~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~ 235 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN---APWYKGWEKETKAGVVKGKTLLEAIDAIEQ 235 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS---CTTCCCEEEECSSSEEEESSHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc---CchhhcccccccccccchHHHHHHhhccCC
Confidence 4332 3344455443 3543 368999999999999887653 345542 233
Q ss_pred CCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHHHHhh
Q psy12244 186 PDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 186 ~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
|......+..+++.+. ++.++.|++.+|....++.+...+
T Consensus 236 p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p 280 (458)
T 1f60_A 236 PSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAP 280 (458)
T ss_dssp CCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEET
T ss_pred CcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECC
Confidence 4444444555665543 456778999999988888865444
No 10
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.9e-23 Score=190.87 Aligned_cols=194 Identities=20% Similarity=0.217 Sum_probs=144.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
....+|+++|++|+|||||+++|++..+.+... ...++.|.+..++.+|+|++.....+.+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346799999999999999999998766554331 356778899999999999998888887765
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|||||||++|..++..+++.+|++|+|||++. +|+.
T Consensus 245 ------~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 245 ------ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp ------CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred ------ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 789999999999999999999999999999999962 7876
Q ss_pred CCC---HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCCC-------------CC--CCCCCC
Q psy12244 135 NAN---PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDGL-------------AK--PDSKAT 191 (257)
Q Consensus 135 ~~~---~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~-------------~~--~~~~~~ 191 (257)
+++ .++..+++..++ ++. ..++|++||++|.|++++.......+||.+. +. |.....
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~ 398 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKD 398 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccc
Confidence 543 233444444433 443 4689999999999999986554444565541 11 222333
Q ss_pred CCCCcchhhh--------cceeeEeeecccchhhHHHHHHhh
Q psy12244 192 PYEDIPIARI--------RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 192 ~~~~~~~~~~--------~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+..+++.+. .+.++.|++.+|....++.+...+
T Consensus 399 ~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p 440 (611)
T 3izq_1 399 DPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYP 440 (611)
T ss_dssp SCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETT
T ss_pred cchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEec
Confidence 4445555443 345678999999998888876544
No 11
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.89 E-value=9.6e-25 Score=200.17 Aligned_cols=194 Identities=19% Similarity=0.299 Sum_probs=106.9
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEee
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYT 87 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 87 (257)
....++|+++|++|+|||||+++|++..+.+... ...+++|.++.|+++|+|++.....+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3467899999999999999999998876655432 34678999999999999999888887776
Q ss_pred cccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC----------c------------------------cCC
Q psy12244 88 SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN----------Q------------------------VDL 133 (257)
Q Consensus 88 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~----------~------------------------~D~ 133 (257)
+ +.++|||||||.+|..++..+++.+|++|||||++ . +|+
T Consensus 254 ~------~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 254 K------KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp -----------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred C------eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 5 78999999999999999999999999999999987 2 777
Q ss_pred CCCC---HHHHHHHHHHHh----CCC--ccceEEecccccccccccccccCCCcccCCC---------CCCCCCCCCCCC
Q psy12244 134 KNAN---PEACEEQLQTLF----NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDGL---------AKPDSKATPYED 195 (257)
Q Consensus 134 ~~~~---~~~~~~~~~~~~----~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~---------~~~~~~~~~~~~ 195 (257)
..++ ++...+++..++ ++. ..+++++||++|.|++++.... .++||.+. ..+......+..
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~-~~~w~~g~~Lle~l~~~~pp~~~~~~p~r 406 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSD-LYKWYKGPTLLSALDQLVPPEKPYRKPLR 406 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCG-GGGTCCSCCHHHHHHTSCCCSCTTTSCCE
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccc-cccccchHHHHHHHHhhccccccccccch
Confidence 6544 344556666655 443 3579999999999998544321 12344331 123333334445
Q ss_pred cchhhh----cceeeEeeecccchhhHHHHHHhh
Q psy12244 196 IPIARI----RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 196 ~~~~~~----~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++.+. .+.++.|++.+|....++.+...+
T Consensus 407 ~~v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p 440 (592)
T 3mca_A 407 LSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVS 440 (592)
T ss_dssp EEEEEEEEETTEEEEEEEEEESEEETTCEEEETT
T ss_pred heeeEEEecCCeEEEEEEEeeeeEccCCEEEEcc
Confidence 655443 456678999999888888776544
No 12
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=1.1e-23 Score=187.21 Aligned_cols=191 Identities=25% Similarity=0.395 Sum_probs=129.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
.+.++|+++|++|+|||||+++|++..+.+... ..++++|.++.|+++|+|++.....+.+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 457899999999999999999999875544321 112467888999999999998877776655
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|||||||++|..++..+++.+|++|+|+|+++ +|+.
T Consensus 84 ------~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 84 ------YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp ------CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred ------eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 789999999999999999999999999999999974 7776
Q ss_pred CC--C---HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCC
Q psy12244 135 NA--N---PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYED 195 (257)
Q Consensus 135 ~~--~---~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~ 195 (257)
+. + ++...+++++++ ++. ..+++++||++|+|+.++++.+ +|+++ ++.|.+....+..
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~---~~~~g~~Ll~~l~~~~~p~~~~~~~~~ 234 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENM---KWYNGPTLEEYLDQLELPPKPVDKPLR 234 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSC---TTCCSCCHHHHHTTCCCCCCGGGSCCB
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccccc---ccccchhHHHHHhccCCCCCCCCCCeE
Confidence 52 1 234455555543 433 3679999999999999877642 34432 2223332223344
Q ss_pred cchhh-----hcceeeEeeecccchhhHHHHHHhh
Q psy12244 196 IPIAR-----IRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 196 ~~~~~-----~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++.+ ..+.++.|++.+|....++.+...+
T Consensus 235 ~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p 269 (435)
T 1jny_A 235 IPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMP 269 (435)
T ss_dssp EEEEEEEEETTTEEEEEEECCBSCEETTCEEEEET
T ss_pred EEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECC
Confidence 55443 2456678999999988888776544
No 13
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=1e-23 Score=189.27 Aligned_cols=184 Identities=22% Similarity=0.383 Sum_probs=120.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++... ...+|.+..++++|+|++..+..+.+.+ +.++|||||||
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~-------~~~~d~~~~e~~~GiTi~~~~~~~~~~~------~~i~iiDtPGh 83 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIAS-------TSAHDKLPESQKRGITIDIGFSAFKLEN------YRITLVDAPGH 83 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC---------------------------CCCEEEETT------EEEEECCCSSH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCc-------ccccccccccccCccEEecceEEEEECC------EEEEEEECCCh
Confidence 3567999999999999999999975321 2346778889999999998888887765 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHHh----CCCcc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTLF----NIDKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~~----~~~~~ 154 (257)
++|..++..+++.+|++|+|+|+++ +|+.+.+ .+...+++++++ ++...
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999999976 7776422 344555555544 34457
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhh-----hcceeeEeeecccchhhHHHHHHhh
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-----IRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++++||++|+|+++|+++|..... .+...+....+..+++++ .++.++.|++.+|....++.+...+
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~---~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p 236 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN---NAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLP 236 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH---HSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTT
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc---CccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECC
Confidence 8999999999999999998875211 110011122233455443 2455667888888888777765433
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=8.3e-23 Score=180.25 Aligned_cols=185 Identities=20% Similarity=0.297 Sum_probs=130.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------cC--
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------LD-- 91 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------~~-- 91 (257)
....++|+++|++|+|||||+++|++. ..+.+..|+++|+|++..+..+.+... +.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~-----------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~ 75 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV-----------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC 75 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC-----------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC-----------ccccChhhhcCCcEEEEeeeeeeccccccccccccccccccc
Confidence 356789999999999999999999642 235667788899999877665554210 00
Q ss_pred Cc----cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-H
Q psy12244 92 GE----EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-P 138 (257)
Q Consensus 92 ~~----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~ 138 (257)
+. ...++|||||||++|..++..++..+|++|||+|+++ +|+...+ .
T Consensus 76 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 76 GHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH
T ss_pred CcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHH
Confidence 11 2689999999999999999999999999999999984 6765432 2
Q ss_pred HHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhh-------------hc
Q psy12244 139 EACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-------------IR 202 (257)
Q Consensus 139 ~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 202 (257)
.+..+++++++. ....+++++||++|.|+++|+++|... ++.|.+....+..+++.+ .+
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~-----~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~ 230 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF-----IPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLV 230 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEECCSCCC----CCC
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh-----CCCCccccCCCcEEEEEEEEeccCCCccccCCc
Confidence 234455666553 245689999999999999999988741 111222222222333332 25
Q ss_pred ceeeEeeecccchhhHHHHHHhh
Q psy12244 203 NFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 203 ~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+.++.|++.+|....++.+...+
T Consensus 231 G~v~~g~v~~G~l~~gd~v~~~p 253 (410)
T 1kk1_A 231 GGVLDGSIVQGKLKVGDEIEIRP 253 (410)
T ss_dssp CCEEEEEEEESCEETTCEEEEEE
T ss_pred eEEEEEEEEeCeEeeCCEEEECC
Confidence 56788999999888888775543
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=7.5e-23 Score=180.40 Aligned_cols=185 Identities=18% Similarity=0.279 Sum_probs=120.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------cC--
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------LD-- 91 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------~~-- 91 (257)
.....+|+++|++|+|||||+++|++. ..+.+..|+++|+|++..+....+... +.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~-----------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~ 73 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV-----------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNC 73 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC-----------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTS
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC-----------ccccCcccccCCcEEEeccccccccccccccccccccccccc
Confidence 345689999999999999999999642 245677788899999876655443210 00
Q ss_pred Cc----cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-H
Q psy12244 92 GE----EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-P 138 (257)
Q Consensus 92 ~~----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~ 138 (257)
+. ...++|||||||++|..++..++..+|++|+|+|+++ +|+.+.+ .
T Consensus 74 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 74 LAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTT
T ss_pred CcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHH
Confidence 11 2689999999999999999999999999999999983 7876543 2
Q ss_pred HHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchh-------------hhc
Q psy12244 139 EACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIA-------------RIR 202 (257)
Q Consensus 139 ~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 202 (257)
.+..+++++++. ....+++++||++|+|+++|+++|... ++.+.+....+..+++. +.+
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~-----i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~ 228 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDF-----IPTPKRDPDATPRMYVARSFDINKPGTEIKDLK 228 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCC
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh-----CCCCcccCCCCeEEEEEEEEeecCCCcccccCc
Confidence 234445555542 245689999999999999999988741 11222222222334433 235
Q ss_pred ceeeEeeecccchhhHHHHHHhh
Q psy12244 203 NFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 203 ~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+.++.|.+.+|....++.+...+
T Consensus 229 G~v~~g~v~~G~l~~gd~v~~~p 251 (408)
T 1s0u_A 229 GGVLGGAIIQGVFKVGDEIEIRP 251 (408)
T ss_dssp CCEEEEEEEESCEETTCEEEEEE
T ss_pred eeEEEEEEEECeEecCCEEEEcC
Confidence 66788999999999888876644
No 16
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.88 E-value=1.1e-22 Score=190.52 Aligned_cols=128 Identities=38% Similarity=0.527 Sum_probs=92.1
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeeccc-CCccEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSIL-DGEEYLL 97 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~-~~~~~~~ 97 (257)
.|.+++|||+|+||.++|||||..+|+..++.+... +...++|..+.|++||+|+......+.|++.. ....+.+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 456899999999999999999999999888776542 45678999999999999999999999886510 1235899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+|||||||.||..++..+++.+|++|+|||+.+ ||+..+++....+++++.++
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 999999999999999999999999999999998 88888888888877776553
No 17
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=9.8e-23 Score=179.50 Aligned_cols=187 Identities=21% Similarity=0.310 Sum_probs=131.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccc---cCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVL---SSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~---~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
....+|+++|++|+|||||+++|++...... .......+|..+.|+.+|+|++.....+.+.. ..++||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~------~~~~iiDt 82 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK------RHYSHVDC 82 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS------CEEEEEEC
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC------eEEEEEEC
Confidence 4568999999999999999999987421110 00112246888899999999987665555444 78999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---C
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---N 150 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~ 150 (257)
|||++|..++..+++.+|++|+|+|+++ +|+.... .+...+++++++ +
T Consensus 83 pG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 83 PGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp CCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999986 7775411 122333444433 4
Q ss_pred C--CccceEEeccccccc------------------ccccccccCCCcccCCCCCCCCCCCCCCCcchhh-----hccee
Q psy12244 151 I--DKKSVLRIWHRRCFS------------------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-----IRNFS 205 (257)
Q Consensus 151 ~--~~~~~i~iSa~~g~g------------------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 205 (257)
+ ...+++++||++|.| +++|++.|.. .++.|.+....+..+++.+ .++.+
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~-----~lp~p~~~~~~p~~~~v~~v~~~~~~G~v 237 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDE-----YIPTPVRDVDKPFLMPVEDVFTITGRGTV 237 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHH-----HSCCCCCCCSSCCEEECCEEEEETTTEEE
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHh-----hcCCCCCCCCCCcEEEEEEEEEcCCCceE
Confidence 3 236899999999988 6666666653 1222333333344455433 35677
Q ss_pred eEeeecccchhhHHHHHH
Q psy12244 206 IIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 206 ~~G~v~~Gk~~~~~~i~~ 223 (257)
+.|++.+|....++.+..
T Consensus 238 ~~g~v~~G~l~~gd~v~~ 255 (405)
T 2c78_A 238 ATGRIERGKVKVGDEVEI 255 (405)
T ss_dssp EEEECCBSEEETTCEEEE
T ss_pred EEEEEecccccCCCEEEE
Confidence 889999999988888754
No 18
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.87 E-value=4.8e-22 Score=179.82 Aligned_cols=119 Identities=33% Similarity=0.622 Sum_probs=101.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
++.++|+|+|++|+|||||+++|++..+.+... ......|....++++|+|+......+.+.+ +.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~------~~i 84 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD------YLI 84 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT------EEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC------EEE
Confidence 568999999999999999999999777766322 134567888889999999998888888876 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+|||||||.+|...+..+++.+|++|+|+|+.. +|+...+..+..+++++.++
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~ 163 (528)
T 3tr5_A 85 NLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILR 163 (528)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred EEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhC
Confidence 999999999999999999999999999999987 88877777777777766654
No 19
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=6.6e-23 Score=180.09 Aligned_cols=186 Identities=20% Similarity=0.273 Sum_probs=129.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
+..+|+++|++|+|||||+++|++........ ...+.+|....|+++|+|++.....+.+.. +.++||||||
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------~~~~iiDtpG 75 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA------RHYAHTDCPG 75 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS------CEEEEEECSS
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC------eEEEEEECCC
Confidence 35789999999999999999998742211100 111235666778889999987665554443 7899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NID 152 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~~ 152 (257)
|++|..++..+++.+|++|+|+|+++ +|+.... .+...+++++++ ++.
T Consensus 76 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 76 HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999987 6765411 122334444433 442
Q ss_pred --ccceEEeccccccc----------ccccccccCCCcccCCCCCCCCCCCCCCCcchhh-----hcceeeEeeecccch
Q psy12244 153 --KKSVLRIWHRRCFS----------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-----IRNFSIIAHVDHGKS 215 (257)
Q Consensus 153 --~~~~i~iSa~~g~g----------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~G~v~~Gk~ 215 (257)
..+++++||++|.| +++|++.|.. .++.|.+....+..+++.+ .++.++.|++.+|..
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~-----~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l 230 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT-----YIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGIL 230 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH-----HSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEE
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH-----hCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceE
Confidence 36899999999875 6777777653 1222333333334455443 356778899999998
Q ss_pred hhHHHHHH
Q psy12244 216 TLADRLLE 223 (257)
Q Consensus 216 ~~~~~i~~ 223 (257)
..++.+..
T Consensus 231 ~~gd~v~~ 238 (397)
T 1d2e_A 231 KKGDECEF 238 (397)
T ss_dssp ETTCEEEE
T ss_pred eCCCEEEE
Confidence 88888753
No 20
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.84 E-value=9.8e-22 Score=172.99 Aligned_cols=195 Identities=14% Similarity=0.191 Sum_probs=119.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.+..+|+++|++|+|||||+++|++........ ...............+.+.+.......+.. .......++||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD-EPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCS-CCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccc-cccccceEEEEECCC
Confidence 456789999999999999999997532111000 000000000001112222111100000000 011126899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-HHHHHHHHHHHh---CCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-PEACEEQLQTLF---NID 152 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~~~~~~~~~~~~---~~~ 152 (257)
|++|..++..++..+|++|+|+|+++ +|+.+.+ ..+..+++.+.+ +..
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 164 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 164 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999987 6765432 234445555554 334
Q ss_pred ccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhh-------------hcceeeEeeecccchhhHH
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-------------IRNFSIIAHVDHGKSTLAD 219 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~G~v~~Gk~~~~~ 219 (257)
..+++++||++|+|+++|+++|... ++.+......+..+++.+ .++.++.|++.+|....++
T Consensus 165 ~~~ii~vSA~~g~gi~~L~~~l~~~-----l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd 239 (403)
T 3sjy_A 165 NVPIIPVSALHKINIDSLIEGIEEY-----IKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQ 239 (403)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTC
T ss_pred CCEEEEEECCCCcChHHHHHHHHHh-----CCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCC
Confidence 5689999999999999999988742 112222222333444432 2566788999999998888
Q ss_pred HHHHhhC
Q psy12244 220 RLLEMTG 226 (257)
Q Consensus 220 ~i~~~~g 226 (257)
.+...++
T Consensus 240 ~v~~~p~ 246 (403)
T 3sjy_A 240 EIKVLPG 246 (403)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 7765443
No 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=3.8e-21 Score=171.04 Aligned_cols=168 Identities=20% Similarity=0.318 Sum_probs=109.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
++|+|+|++|+|||||+|+|++....+ .+..+|+|.+.....+.|.+ ..+.+|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~-------------v~~~~g~T~d~~~~~~~~~~------~~~~l~DT~G~~~~ 62 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI-------------VEDEEGVTRDPVQDTVEWYG------KTFKLVDTCGVFDN 62 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------------------CCSEEEEEETT------EEEEEEECTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce-------------ecCCCCCccceeeEEEEECC------eEEEEEECCCcccc
Confidence 579999999999999999998654332 12356888888888888876 7899999999764
Q ss_pred --------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHH-HHHhCCC
Q psy12244 108 --------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQL-QTLFNID 152 (257)
Q Consensus 108 --------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~-~~~~~~~ 152 (257)
+...+..+++.||++++|+|+.. +|+. .....++ .+++...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~----~~~~~~~~~~~~~lg 138 (439)
T 1mky_A 63 PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL----REFEREVKPELYSLG 138 (439)
T ss_dssp GGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH----HHHHHHTHHHHGGGS
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc----cccHHHHHHHHHhcC
Confidence 34566778899999999999876 4432 1112222 3333222
Q ss_pred ccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
..+++++||++|.|+++|++.+...-..... ...... .......++++|..++||+|+..+++....
T Consensus 139 ~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~---~~~~~~----~~~~~~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 139 FGEPIPVSAEHNINLDTMLETIIKKLEEKGL---DLESKP----EITDAIKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp SCSCEECBTTTTBSHHHHHHHHHHHHHHTTC---CSSSCC----CCCSCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred CCCEEEEeccCCCCHHHHHHHHHHhcccccc---cchhcc----ccccCceEEEECCCCCCHHHHHHHHhCCcc
Confidence 2358999999999999999888632110000 000000 011235799999999999999999987543
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=2.4e-21 Score=185.19 Aligned_cols=187 Identities=21% Similarity=0.336 Sum_probs=119.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....+|+++|++|+|||||+++|++........ ...+.+|..+.|+++|+|++.....+.... ..++|||||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~------~kI~IIDTP 367 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPT------RHYAHVDCP 367 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSS------CEEEEEECC
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCC------EEEEEEECC
Confidence 456899999999999999999998742111000 011246778889999999987665555443 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||++|..++..+++.+|++|+|||+++ +|+.... .+...+++++++ ++
T Consensus 368 GHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 368 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp CHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999987 7775421 223334444433 43
Q ss_pred --CccceEEeccccc--------ccccccccccCCCcccCCCCCCCCCCCCCCCcchhh-----hcceeeEeeecccchh
Q psy12244 152 --DKKSVLRIWHRRC--------FSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-----IRNFSIIAHVDHGKST 216 (257)
Q Consensus 152 --~~~~~i~iSa~~g--------~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~G~v~~Gk~~ 216 (257)
...+++++||++| .|+++|++.|.. .++.|.+....+..+++.+ .++.++.|++.+|...
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~-----~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLk 522 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS-----YIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 522 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH-----TSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEE
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhh-----hcCCCccccccceeeeccccccccCCcEEEEEEEeccEEe
Confidence 2468999999999 568888887763 1222333323333444443 3567788999999988
Q ss_pred hHHHHHH
Q psy12244 217 LADRLLE 223 (257)
Q Consensus 217 ~~~~i~~ 223 (257)
.++.+..
T Consensus 523 vGD~V~I 529 (1289)
T 3avx_A 523 VGEEVEI 529 (1289)
T ss_dssp TTCEEEE
T ss_pred cCCEEEE
Confidence 8888754
No 23
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=9.3e-22 Score=174.82 Aligned_cols=164 Identities=18% Similarity=0.285 Sum_probs=103.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc--
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV-- 106 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-- 106 (257)
++|+++|++|+|||||+|+|++....+ .+...|+|.+.....+.+.+ ..+.+|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-------------v~~~~g~T~d~~~~~~~~~~------~~~~l~DT~G~~~~ 64 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI-------------VEDTPGVTRDRIYSSAEWLN------YDFNLIDTGGIDIG 64 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------------------CEEEECTTCS------SCCEEEC-------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-------------ecCCCCCccceEEEEEEECC------ceEEEEECCCCCCc
Confidence 579999999999999999997643322 12356777776666666654 679999999996
Q ss_pred ------ccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 107 ------DFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ------~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
.+...+..++..+|++|+|+|+.. +|+... ...+.+++.....
T Consensus 65 ~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~-----~~~~~~~~~lg~~ 139 (436)
T 2hjg_A 65 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM-----RANIYDFYSLGFG 139 (436)
T ss_dssp --CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------CCCSSGGGSSC
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc-----hhhHHHHHHcCCC
Confidence 566777888999999999999986 444321 1111122222223
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGT 227 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~ 227 (257)
+++++||++|.|+++|++.+..... +. +.. . ......+++++|+.+.||+++.++++.....
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l~-~~---~~~-~------~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~ 201 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHFK-NI---PET-K------YNEEVIQFCLIGRPNVGKSSLVNAMLGEERV 201 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTGG-GC---CSS-C------CCTTCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred CeEEEeCcCCCChHHHHHHHHHhcC-cc---ccc-c------ccccCcEEEEEcCCCCCHHHHHHHHhCCCce
Confidence 6899999999999999988863211 11 100 0 0122467999999999999999999876543
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.82 E-value=7.8e-20 Score=170.72 Aligned_cols=126 Identities=38% Similarity=0.539 Sum_probs=102.5
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecc-cCCccEEEE
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSI-LDGEEYLLN 98 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~~~~~~~ 98 (257)
+.++.++|+|+|++|+|||||+++|++..+.+... ....++|+.+.|+++|+|+......+.|... .++..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34678999999999999999999999876655432 3456789999999999999888777777531 134458999
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
|||||||.+|...+..+++.+|++|+|+|++. +|+...+.++..+++++.+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999987 7877766666666666554
No 25
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=2e-21 Score=174.00 Aligned_cols=173 Identities=19% Similarity=0.280 Sum_probs=115.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.++++|+++|++|+|||||+++|+..... ....+|+|++.....+.+.+ ..++|||||||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~--------------~~e~~GIT~~i~~~~v~~~~------~~i~~iDTPGh 61 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA--------------SGEAGGITQHIGAYHVETEN------GMITFLDTPGH 61 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS--------------BTTBCCCCCCSSCCCCCTTS------SCCCEECCCTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc--------------cccCCCeeEeEEEEEEEECC------EEEEEEECCCc
Confidence 46788999999999999999999763211 11235777776665555543 57899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHH--h--CC-Ccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTL--F--NI-DKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~--~--~~-~~~ 154 (257)
++|..++..+++.+|++|||+|+++ +|+..++.++..+++.+. + .+ ...
T Consensus 62 e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~ 141 (501)
T 1zo1_I 62 AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGES 141 (501)
T ss_dssp TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSC
T ss_pred HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCc
Confidence 9999999999999999999999986 777654433222222110 0 01 125
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHH
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
+++++||++|.|+++|+++|.... +.+. +......+.... ....++.+..|.+.+|....++.+
T Consensus 142 ~~v~vSAktG~gI~eLle~I~~~~--~~~~-~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v 210 (501)
T 1zo1_I 142 QFVHVSAKAGTGIDELLDAILLQA--EVLE-LKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIV 210 (501)
T ss_dssp EEEECCTTTCTTCTTHHHHTTTTC--CCST-TTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEE
T ss_pred cEEEEeeeeccCcchhhhhhhhhh--hhhc-cccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEE
Confidence 799999999999999999987431 1111 111111111111 233466777788888877766654
No 26
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.80 E-value=3.5e-19 Score=161.26 Aligned_cols=143 Identities=26% Similarity=0.428 Sum_probs=103.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.+.++|+|+|++|+|||||+++|++..+.+... ....+.|+.+.++.+|+|+......+.+.+ +.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~------~~i 84 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD------CLV 84 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT------EEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC------eEE
Confidence 467899999999999999999999866554221 124567888889999999998888888876 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+|||||||.+|...+..+++.+|++|+|+|+.. +|+...+..+..+++++.++.
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 85 NLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKI 164 (529)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred EEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999987 888877777888888888876
Q ss_pred Cccc--eEEeccccccccccccccc
Q psy12244 152 DKKS--VLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 152 ~~~~--~i~iSa~~g~gi~~l~~~i 174 (257)
...+ +...|++++.|+.++++..
T Consensus 165 ~~~~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 165 GCAPITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTE
T ss_pred CccceecceecccCcceeeehhhhh
Confidence 5443 2336899999998887644
No 27
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.80 E-value=3.9e-19 Score=165.84 Aligned_cols=149 Identities=31% Similarity=0.450 Sum_probs=109.1
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
++.++.++|+|+|++|+|||||+++|++..+.+... ......|..+.|+++++|+......+.+.+ +.++
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~------~~i~ 78 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG------HRVN 78 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT------EEEE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC------eeEE
Confidence 345678999999999999999999999876655321 234677888889999999998888888866 8999
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCC
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
|||||||.+|...+..+++.+|++|+|+|+.. +|+...+..+..+++++.++..
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQAN 158 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCC
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999987 8888878888899999988764
Q ss_pred cc-ceEEecccccccccccccccCCCcc
Q psy12244 153 KK-SVLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 153 ~~-~~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
.. .++|+|+ |.|++.+.+.+...+|
T Consensus 159 ~~~~~ipisa--~~~~~~l~d~l~~~~~ 184 (693)
T 2xex_A 159 AAPIQLPIGA--EDEFEAIIDLVEMKCF 184 (693)
T ss_dssp EEESEEEECC--GGGCCEEEETTTTEEE
T ss_pred ceeEEeeccc--CCCcceeeeeecceeE
Confidence 33 3689998 8889888888765444
No 28
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=1.5e-20 Score=167.88 Aligned_cols=178 Identities=17% Similarity=0.259 Sum_probs=108.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG- 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG- 104 (257)
.+.++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+.+.+ ..+.+|||||
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-------------v~~~~g~t~~~~~~~~~~~~------~~~~liDT~G~ 81 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-------------VEDTPGVTRDRIYSSAEWLN------YDFNLIDTGGI 81 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------------------CEEEECTTCS------SCCEEECCCC-
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-------------cCCCCCcceeEEEEEEEECC------ceEEEEECCCC
Confidence 346789999999999999999996543221 22345777776666655544 6899999999
Q ss_pred -------CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 105 -------HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 105 -------~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++.+...+..+++.+|++|+|+|+.. +|+.+ ......+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~-----~~~~~~e~~~l 156 (456)
T 4dcu_A 82 DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE-----MRANIYDFYSL 156 (456)
T ss_dssp -----CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------------CCSGGG
T ss_pred CCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh-----hhhhHHHHHHc
Confidence 56677788888999999999999886 33321 11222222222
Q ss_pred CccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS 231 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~ 231 (257)
...+++++||++|.|+++|++.+..... . ..... ......+++++|+.+.||+++..+++.........
T Consensus 157 g~~~~~~iSA~~g~gv~~L~~~i~~~l~-~----~~~~~------~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~ 225 (456)
T 4dcu_A 157 GFGEPYPISGTHGLGLGDLLDAVAEHFK-N----IPETK------YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN 225 (456)
T ss_dssp SSSSEEECCTTTCTTHHHHHHHHHTTGG-G----SCSSC------CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC
T ss_pred CCCceEEeecccccchHHHHHHHHhhcc-c----ccccc------cccccceeEEecCCCCCHHHHHHHHhCCCccccCC
Confidence 2335689999999999999988763211 0 00000 01234678999999999999999998655433333
Q ss_pred CCccccC
Q psy12244 232 GSSQVLD 238 (257)
Q Consensus 232 g~~~~~d 238 (257)
..+++.|
T Consensus 226 ~~gtt~~ 232 (456)
T 4dcu_A 226 VAGTTRD 232 (456)
T ss_dssp ------C
T ss_pred CCCeEEE
Confidence 3334444
No 29
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=2.4e-19 Score=166.66 Aligned_cols=122 Identities=25% Similarity=0.330 Sum_probs=98.8
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.....+.++|+|+|++|+|||||+++|++..+.+... +.....|....++.+++|+......+.+.. +.+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~------~~~ 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG------HRV 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT------EEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC------EEE
Confidence 3445678899999999999999999999766543222 234567888888899999888777777665 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+|||||||.+|...+..+++.+|++++|+|+.. +|+. .+..+..+++++.++
T Consensus 77 nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 77 FLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp EEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred EEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999887 8887 777777777776655
No 30
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=6.3e-21 Score=165.67 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=114.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+++|+++|++|+|||||+++|+ ++|+|++.....+.+.. +.++|||||||++
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~----------------------~~giTi~~~~~~~~~~~------~~i~iiDtPGh~~ 72 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG----------------------KKGTSSDITMYNNDKEG------RNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS----------------------EEEEESSSEEEEECSSS------SEEEEEECTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHH----------------------hCCEEEEeeEEEEecCC------eEEEEEECCChHH
Confidence 3489999999999999999984 45778887776666554 6899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-HHHHHHHHHHHhC---CCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-PEACEEQLQTLFN---IDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~~~~~~~~~~~~~---~~~~~ 155 (257)
|..++..+++.+|++|+|+| +. +|+ +.+ .++..+++++++. ....|
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ 150 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWE 150 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCE
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999 64 444 211 2334456666653 33468
Q ss_pred eEE--ecccc---cccccccccccCCCcccCCCCCCCCC-CCCCCCcchhh-----hcceeeEeeecccchhhHHHHHHh
Q psy12244 156 VLR--IWHRR---CFSCADCHRSLDSTNLNDGLAKPDSK-ATPYEDIPIAR-----IRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 156 ~i~--iSa~~---g~gi~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
+++ +||++ |.|+++|++.|...... ...++.. ...+..+++.+ .++.++.|++.+|....++.+...
T Consensus 151 ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~--~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~ 228 (370)
T 2elf_A 151 CISLNTNKSAKNPFEGVDELKARINEVAEK--IEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIF 228 (370)
T ss_dssp EEECCCCTTSSSTTTTHHHHHHHHHHHHHH--HHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEE
T ss_pred EEecccccccCcCCCCHHHHHHHHHhhccc--cccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEEC
Confidence 999 99999 99999999887643110 0000000 00011111222 345677888999988888876543
Q ss_pred h
Q psy12244 225 T 225 (257)
Q Consensus 225 ~ 225 (257)
+
T Consensus 229 p 229 (370)
T 2elf_A 229 P 229 (370)
T ss_dssp T
T ss_pred C
Confidence 3
No 31
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.79 E-value=3.7e-19 Score=143.54 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=90.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|||||||+++|+... +..+..+.+..+.....+.. ++..+.+.||||+|++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~--------------f~~~~~~Tig~d~~~k~~~~----~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDS--------------FDNTYQATIGIDFLSKTMYL----EDRTIRLQLWDTAGLE 73 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC--------------CC----------CEEEEEEC----SSCEEEEEEECCSCTT
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCC--------------CCCCcCCccceEEEEEEEEe----cceEEEEEEEECCCch
Confidence 44689999999999999999997522 11122232333332222222 5566899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+..+++.+|++++|+|.++ +|+...+ ..+..+++.+.++ +
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~---~ 150 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN---V 150 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---C
T ss_pred hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC---C
Confidence 999999999999999999999998 6764322 1222334444445 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.||+++|+.|.+
T Consensus 151 ~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 151 MFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHH
T ss_pred eeEEEeCCCCcCHHHHHHHHHH
Confidence 6999999999999999988763
No 32
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.79 E-value=1.2e-18 Score=162.48 Aligned_cols=147 Identities=31% Similarity=0.449 Sum_probs=105.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
.++.++|+|+|++|+|||||+++|+...+.+... .....+|+...|+++++|+......+.+.. +.++||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~------~~i~li 82 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD------HRINII 82 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT------EEEEEE
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC------eEEEEE
Confidence 4678999999999999999999999776654322 235678888999999999998888888766 899999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
|||||.+|...+..+++.+|++|+|+|+.. +|+...+..+..+++++.++....
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~ 162 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPV 162 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEE
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999987 898888888999999998876543
Q ss_pred c-eEEecccccccccccccccCCCcc
Q psy12244 155 S-VLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 155 ~-~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
+ .+|+|+ +.+++.+.+.+...+|
T Consensus 163 ~~~~Pi~~--~~~~~g~~d~~~~~~~ 186 (691)
T 1dar_A 163 VMQLPIGR--EDTFSGIIDVLRMKAY 186 (691)
T ss_dssp ECEEEESC--GGGCCEEEETTTTEEE
T ss_pred ceeccccC--CCcccchhhhhcceee
Confidence 3 689998 7777777777665444
No 33
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.77 E-value=3.1e-21 Score=174.08 Aligned_cols=173 Identities=22% Similarity=0.249 Sum_probs=115.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
++++|+++|++|+|||||+++|++... .....+++|.+.....+.+.. ...++|||||||+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~--------------~~~~~~giT~~i~~~~v~~~~-----g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV--------------AAMEAGGITQHIGAFLVSLPS-----GEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH--------------HHSSSCCBCCCTTSCCBCSSC-----SSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--------------ccccCCceeEEEeEEEEEeCC-----CCEEEEEECCChH
Confidence 567899999999999999999976432 122345677776666555421 2478999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh----CC-Cccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF----NI-DKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~----~~-~~~~ 155 (257)
+|..++..+++.+|++|||+|+++ +|+.+.+.+...+++...- .+ ...+
T Consensus 64 ~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~ 143 (537)
T 3izy_P 64 AFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQ 143 (537)
T ss_dssp CTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEE
T ss_pred HHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCce
Confidence 999999999999999999999987 7776554433333443321 11 1357
Q ss_pred eEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHH
Q psy12244 156 VLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
++++||++|.|+++|++.|..+. +.+. +......+...+ ..+.++.+..|.+.+|....++.+
T Consensus 144 iv~vSAktG~GI~eLle~I~~l~--~~~~-~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 144 AVHVSALTGENMMALAEATIALA--EMLE-LKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp ECCCCSSSSCSSHHHHHHHHHHH--TTCC-CCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred EEEEECCCCCCchhHHHHHHHhh--hccc-ccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 99999999999999999887432 1111 111111122222 223455666777777766665544
No 34
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=137.83 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=91.2
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+.....+|+++|.+|+|||||+++|++... .......++.+.....+.+ ++....+.|||||
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~ 83 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTF--------------CEACKSTVGVDFKIKTVEL----RGKKIRLQIWDTA 83 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC----------------------CCTTEEEEEEEEEE----TTEEEEEEEEEEC
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCC--------------CcCCCCccceeEEEEEEEE----CCeEEEEEEEeCC
Confidence 345678999999999999999999954221 1112233333433334443 3445789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~ 151 (257)
|+++|...+...++.+|++|+|+|+++ +|+.... ..+..+++.+. .
T Consensus 84 G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~--~ 161 (192)
T 2il1_A 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ--I 161 (192)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT--S
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh--c
Confidence 999999999999999999999999987 5653221 11222233332 2
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 162 ~~~~~~~~SA~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 162 TGMRFCEASAKDNFNVDEIFLKLV 185 (192)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 345799999999999999998775
No 35
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=137.09 Aligned_cols=130 Identities=17% Similarity=0.241 Sum_probs=95.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|+...... +..++.+.+.....+.+ ++..+.+.||||||+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE--------------SYISTIGVDFKIRTIEL----DGKTIKLQIWDTAGQ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------CCCCCSSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCcccceEEEEEEEE----CCEEEEEEEEECCCc
Confidence 467899999999999999999997633211 11233444444444444 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++++|+|+++ +|+.... .....+++...++
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 152 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG--- 152 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT---
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---
Confidence 9999889999999999999999987 6775432 1233344444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988874
No 36
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=1.1e-19 Score=141.38 Aligned_cols=131 Identities=23% Similarity=0.309 Sum_probs=93.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.++|+++|.+|+|||||+++|++..... ...++++.+.....+.+.+ ..+.+|||||+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~------~~~~l~Dt~G~ 65 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE--------------QEAGGITQHIGAYQVTVND------KKITFLDTPGH 65 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC--------------SSCCSSSTTCCCCEEEETT------EEEEESCCCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc--------------CCCCceeEeeeEEEEEeCC------ceEEEEECCCC
Confidence 456789999999999999999997532211 1122334344444455544 67889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC-----Ccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI-----DKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~-----~~~ 154 (257)
++|...+..++..+|++++|+|+++ +|+...+.++..+.+...-.. ...
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 66 EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSE
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcc
Confidence 9988777778889999999999876 787665544444444321111 114
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|+++++++|..
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHH
Confidence 7999999999999999988864
No 37
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.77 E-value=1.3e-18 Score=136.93 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=90.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ....|+......+.+.. ..+.||||||+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~ 77 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNE----------------DMIPTVGFNMRKITKGN------VTIKLWDIGGQ 77 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------SCCCCCSEEEEEEEETT------EEEEEEEECCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCC----------------ccCCCCceeEEEEEeCC------EEEEEEECCCC
Confidence 467899999999999999999997633210 01112222223333333 88999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~~-~~~~ 152 (257)
++|...+..+++.+|++|+|+|+++ +|+... +.++..+.+... +...
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 157 (188)
T 1zd9_A 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR 157 (188)
T ss_dssp HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS
T ss_pred HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccC
Confidence 9998888889999999999999976 676543 223333322211 1123
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 158 ~~~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 158 EICCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988863
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.76 E-value=1.3e-18 Score=135.17 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=91.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|++.... ....+.++.+.....+.+ ++....+.+|||||
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G 65 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFD--------------TQLFHTIGVEFLNKDLEV----DGHFVTMQIWDTAG 65 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCC--------------C----CCSEEEEEEEEEE----TTEEEEEEEEECCC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCceeeeEEEEEEEE----CCEEEEEEEEeCCC
Confidence 346789999999999999999999763211 111223333333333333 34457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCC--CHHHHHHHHHHH
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNA--NPEACEEQLQTL 148 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~--~~~~~~~~~~~~ 148 (257)
+++|...+...++.+|++++|+|+++ +|+.+. ..++.. ++.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~-~~~~~ 144 (177)
T 1wms_A 66 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ-AWCRD 144 (177)
T ss_dssp CGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH-HHHHH
T ss_pred chhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHH-HHHHh
Confidence 99999998899999999999999987 665421 122222 22221
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|+++++++|..
T Consensus 145 --~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 145 --NGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp --TTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred --cCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 23457999999999999999988763
No 39
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.76 E-value=1.6e-18 Score=147.13 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=96.0
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
++...-.|+++|++|+|||||+|+|++....+... ..+.|.......+... ...++.|||||
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~-------------~~~tT~~~~~~~~~~~-----~~~~i~lvDTP 67 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP-------------KAGTTRMRVLGVKNIP-----NEAQIIFLDTP 67 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-------------SSCCCCSCEEEEEEET-----TTEEEEEEECC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCC-------------CCCceeeEEEEEEecC-----CCCeEEEEECc
Confidence 34556789999999999999999998755433221 2344444434444443 13889999999
Q ss_pred CCccc----------HHHHHHhhhhcceEEEEEecCc---------------------------cCCC-C-CCHHHHHHH
Q psy12244 104 GHVDF----------SNEVTRSLAACQGVVLLIDANQ---------------------------VDLK-N-ANPEACEEQ 144 (257)
Q Consensus 104 G~~~~----------~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~-~-~~~~~~~~~ 144 (257)
|+.++ ...+..++..+|++++|+|+++ +|+. . .......+.
T Consensus 68 G~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~ 147 (308)
T 3iev_A 68 GIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDE 147 (308)
T ss_dssp CCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHH
T ss_pred CCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHH
Confidence 99653 3667778899999999999986 6765 2 224555566
Q ss_pred HHHHhCCCccceEEecccccccccccccccCC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.+.++ ...+++++||++|.|++++++.|..
T Consensus 148 l~~~~~-~~~~i~~vSA~~g~gv~~L~~~l~~ 178 (308)
T 3iev_A 148 IHKKHP-ELTEIVPISALKGANLDELVKTILK 178 (308)
T ss_dssp HHHHCT-TCCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHhcc-CCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 666553 2356999999999999999988764
No 40
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.76 E-value=3.9e-19 Score=138.52 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=80.6
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|++..... ...+.++.+.....+.+. .+....+.+|||||
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G 67 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQ--------------QYKATIGADFLTKEVTVD---GDKVATMQVWDTAG 67 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCT--------------TC---CCCSCEEEEECCS---SSCCEEEEEECCC-
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCc--------------ccCCccceEEEEEEEEEc---CCcEEEEEEEECCC
Confidence 3567899999999999999999997633210 111222223223333332 13457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC---HHHHHHHHHH
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN---PEACEEQLQT 147 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~---~~~~~~~~~~ 147 (257)
+++|...+...++.+|++++|+|+++ +|+.... ..+...++.+
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~ 147 (182)
T 1ky3_A 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK 147 (182)
T ss_dssp ---------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH
T ss_pred ChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH
Confidence 99999888889999999999999986 5653211 1222223332
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. ....+++++||++|.|+++++++|..
T Consensus 148 ~--~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 148 S--LGDIPLFLTSAKNAINVDTAFEEIAR 174 (182)
T ss_dssp H--TTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred h--cCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 1 23457999999999999999988763
No 41
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=1.6e-18 Score=136.43 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCc
Q psy12244 14 DSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGE 93 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~ 93 (257)
+..+..+.+...+...+|+++|.+|+|||||+++|++...... .....+.+.....+.+ .+.
T Consensus 8 ~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~ 69 (189)
T 2gf9_A 8 HHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTVYR----HDK 69 (189)
T ss_dssp ------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCCCCCCEEEEEEEEE----TTE
T ss_pred cccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCC--------------cCCceeEEEEEEEEEE----CCe
Confidence 3344444455556788999999999999999999976432110 0111122222222222 334
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHH
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEAC 141 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~ 141 (257)
...+.||||||+.+|...+..+++.+|++++|+|+++ +|+.... ..+.
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 149 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAED 149 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHH
Confidence 5789999999999988888888999999999999976 6664321 1223
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++.+.++ .+++++||++|.|+++++++|..
T Consensus 150 ~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 150 GRRLADDLG---FEFFEASAKENINVKQVFERLVD 181 (189)
T ss_dssp HHHHHHHHT---CEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHH
Confidence 334444444 36999999999999999988763
No 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=136.39 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=86.6
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
+.++..+..+|+++|++|+|||||+++|+..... .........+.....+.+ ++....+.||
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~i~ 82 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFR--------------ENISATLGVDFQMKTLIV----DGERTVLQLW 82 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEE----TTEEEEEEEE
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCC--------------ccCCCCccceeEEEEEEE----CCEEEEEEEE
Confidence 3455567789999999999999999999763211 011111122222222333 3445789999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCC------CC--HHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKN------AN--PEACE 142 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~------~~--~~~~~ 142 (257)
||||+++|...+...++.+|++|+|+|+++ +|+.. .. ..+..
T Consensus 83 Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~ 162 (199)
T 2p5s_A 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162 (199)
T ss_dssp ECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred ECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHH
Confidence 999999999999999999999999999987 55421 00 11222
Q ss_pred HHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.+...++ .+++++||++|.|+++++++|.
T Consensus 163 ~~~~~~~~---~~~~~~SA~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 163 EKLAMTYG---ALFCETSAKDGSNIVEAVLHLA 192 (199)
T ss_dssp HHHHHHHT---CEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHcC---CeEEEeeCCCCCCHHHHHHHHH
Confidence 23333333 4699999999999999988776
No 43
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.76 E-value=4e-18 Score=130.68 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=87.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...-.. ...|+......+.+.. ..+.+|||||+++|.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-----------------~~~t~~~~~~~~~~~~------~~~~i~Dt~G~~~~~ 58 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTIGFNVETVEYKN------ISFTVWDVGGQDKIR 58 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-----------------CCCCSSCCEEEEECSS------CEEEEEECCCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-----------------ccCcCceeEEEEEECC------EEEEEEEcCCChhhH
Confidence 69999999999999999997643210 0113233333344433 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~~~~~ 156 (257)
..+...++.+|++++|+|+++ +|+.+.. .++..+.+... +.....++
T Consensus 59 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEE
Confidence 988899999999999999987 6765432 23333222211 11223468
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp EECBTTTTBTHHHHHHHHH
T ss_pred EEcccCCCcCHHHHHHHHH
Confidence 9999999999999998876
No 44
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.76 E-value=2.7e-18 Score=132.42 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=91.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+..... ....|+......+.+.. ..+.+|||||+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~~~Dt~G~ 61 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-----------------TTIPTIGFNVETVTYKN------LKFQVWDLGGL 61 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-----------------CCCCCSSEEEEEEEETT------EEEEEEEECCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------CcCCcCccceEEEEECC------EEEEEEECCCC
Confidence 34578999999999999999999763211 01122222333444444 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~ 152 (257)
++|...+..+++.+|++++|+|+++ +|+.... ..+..+.+... +...
T Consensus 62 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (171)
T 1upt_A 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDR 141 (171)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTS
T ss_pred hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCC
Confidence 9998888889999999999999986 6765432 33333333221 2222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 142 KWQIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEECcCCCCcCHHHHHHHHHH
Confidence 347999999999999999988763
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.1e-18 Score=132.08 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=85.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|++|+|||||+++|++....... ..++++.+.....+.+ ++....+.+|||||+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------~~~t~~~~~~~~~~~~----~~~~~~~~~~Dt~G~ 70 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-------------FISTVGIDFRNKVLDV----DGVKVKLQMWDTAGQ 70 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-------------CCCCCSCEEEEEEEEE----TTEEEEEEEEECCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-------------cCCceeeEEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 46789999999999999999999764321110 1122222322222222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++++|+|+++ +|+.... ..+..+.+.+.++
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 147 (180)
T 2g6b_A 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG--- 147 (180)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcC---
Confidence 9999888899999999999999987 7775432 1222333444344
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
No 46
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.76 E-value=6.1e-18 Score=134.71 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=89.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|.+|+|||||+++|+...- ..+....++.+.....+.+ ++....+.||||||+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~ 88 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF--------------SERQGSTIGVDFTMKTLEI----QGKRVKLQIWDTAGQ 88 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------------------CEEEEEEEE----TTEEEEEEEECCTTC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC--------------CCCCCCCcceEEEEEEEEE----CCEEEEEEEEECCCc
Confidence 4568999999999999999999976321 1111222222222333333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... ..+..+++.+.++.
T Consensus 89 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-- 166 (201)
T 2hup_A 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDI-- 166 (201)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC--
T ss_pred HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCC--
Confidence 9999999999999999999999987 6664321 11222233333332
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 167 ~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 167 LCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 26999999999999999988863
No 47
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.8e-18 Score=136.87 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=92.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|.+|+|||||+++|+..... ......++.+.....+.+ ++....+.||||||+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP--------------PGQGATIGVDFMIKTVEI----NGEKVKLQIWDTAGQ 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC--------------TTCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEE----CCEEEEEEEEECCCc
Confidence 46789999999999999999999763221 011122333333333333 345578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++++|+|+++ +|+.... ..+..+++....+
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--- 162 (201)
T 2ew1_A 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD--- 162 (201)
T ss_dssp GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC---
Confidence 9999989999999999999999986 5653211 1222223333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 163 MYYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
No 48
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.75 E-value=2e-18 Score=132.97 Aligned_cols=129 Identities=18% Similarity=0.207 Sum_probs=89.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+++|++.... ....++++.+.....+.+ ++....+.+|||||++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFN--------------PSFITTIGIDFKIKTVDI----NGKKVKLQIWDTAGQE 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCC--------------C-------CCEEEEEEES----SSCEEEEEEECCTTGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEE----CCEEEEEEEEeCCCCh
Confidence 3578999999999999999999763321 111222232322233333 3445789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC-HHHHHHHHHHHhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN-PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~ 155 (257)
++...+...++.+|++++|+|+++ +|+.... ..+..+++.+.++ .+
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~ 140 (170)
T 1g16_A 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG---IP 140 (170)
T ss_dssp GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT---CC
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC---Ce
Confidence 988888888999999999999986 6763322 2223334444444 36
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++++.|..
T Consensus 141 ~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 141 FIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988763
No 49
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.75 E-value=1.9e-18 Score=146.10 Aligned_cols=129 Identities=21% Similarity=0.210 Sum_probs=90.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+|+|++....+... ..+.|.......+.+.. .++.||||||+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-------------~~~tTr~~i~~i~~~~~------~~l~l~DTpG~ 65 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-------------RPQTTRKRLRGILTEGR------RQIVFVDTPGL 65 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-------------SSCCCCSCEEEEEEETT------EEEEEEECCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecC-------------CCCceeEEEEEEEEeCC------cEEEEecCccc
Confidence 356689999999999999999998755433221 12233332222233333 78999999999
Q ss_pred cc--------cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 106 VD--------FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 106 ~~--------~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
.+ |......+++.+|++++|+|+++ +|+...+. ...+.+++.
T Consensus 66 ~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~- 143 (301)
T 1wf3_A 66 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE-EAMKAYHEL- 143 (301)
T ss_dssp CCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HHHHHHHHT-
T ss_pred cchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH-HHHHHHHHh-
Confidence 87 56677788999999999999976 45433211 133444443
Q ss_pred CCCccceEEecccccccccccccccCC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|++++++.|..
T Consensus 144 -~~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 144 -LPEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp -STTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred -cCcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 33456899999999999999988864
No 50
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.75 E-value=3.5e-18 Score=133.12 Aligned_cols=130 Identities=13% Similarity=0.143 Sum_probs=91.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ...+.++.+.....+.+ ++....+.||||||+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE--------------FQESTIGAAFFSQTLAV----NDATVKFEIWDTAGQ 71 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT--------------TSCCCSCCSEEEEEEEE----TTEEEEEEEEECCCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC--------------cCCCCceeEEEEEEEEE----CCEEEEEEEEeCCCC
Confidence 456789999999999999999997632211 11122222222222333 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
.+|...+...++.+|++++|+|+++ +|+.... ..+..+++.+..+
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~--- 148 (181)
T 2efe_B 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG--- 148 (181)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT---
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcC---
Confidence 9999888889999999999999987 6764322 1222223333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~ 171 (181)
T 2efe_B 149 LFFMETSAKTATNVKEIFYEIAR 171 (181)
T ss_dssp CEEEECCSSSCTTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998873
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.75 E-value=2.3e-18 Score=135.58 Aligned_cols=134 Identities=20% Similarity=0.238 Sum_probs=89.3
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
..+..+..+|+++|.+|+|||||+++|+...... .....++.+.....+.+ ++....+.|||
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~D 75 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD--------------RTEATIGVDFRERAVDI----DGERIKIQLWD 75 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCS--------------SCCCCCSCCEEEEEEEE----TTEEEEEEEEE
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCCcceEEEEEEEEE----CCEEEEEEEEE
Confidence 3344567899999999999999999997633211 01112222222223333 34457899999
Q ss_pred CCCCcccH-HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHH
Q psy12244 102 TPGHVDFS-NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQT 147 (257)
Q Consensus 102 tpG~~~~~-~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~ 147 (257)
|||+++|. ..+..+++.+|++|+|+|+++ +|+.... ..+..+++..
T Consensus 76 t~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 155 (189)
T 1z06_A 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 155 (189)
T ss_dssp CCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH
Confidence 99999988 677788899999999999986 6663321 1222333444
Q ss_pred HhCCCccceEEeccccc---ccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRC---FSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g---~gi~~l~~~i~~ 176 (257)
.++ .+++++||++| .|+++++++|..
T Consensus 156 ~~~---~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 156 THS---MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp HTT---CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred HcC---CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 334 46999999999 999999888763
No 52
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.75 E-value=2.5e-18 Score=135.64 Aligned_cols=130 Identities=16% Similarity=0.192 Sum_probs=90.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.||||||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G 79 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVNI----DGKQIKLQIWDTAG 79 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEEEEEEE----TTEEEEEEEECCTT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEE----CCEEEEEEEEECCC
Confidence 3567899999999999999999997643211 11112222222223333 34457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
+++|...+...++.+|++|+|+|+++ +|+.... ..+..+++.+.++
T Consensus 80 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-- 157 (191)
T 2a5j_A 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-- 157 (191)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT--
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcC--
Confidence 99988888888999999999999987 6664211 1222233333334
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 158 -~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 158 -LIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp -CEEEEECTTTCTTHHHHHHHHH
T ss_pred -CEEEEEeCCCCCCHHHHHHHHH
Confidence 4699999999999999998876
No 53
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=134.87 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=93.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++... ......+.+.+.....+.+ ++....+.+|||||+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 68 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF--------------SGSYITTIGVDFKIRTVEI----NGEKVKLQIWDTAGQ 68 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----------------CCTTTBSEEEEEEEEEE----TTEEEEEEEEEETTG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--------------CCccCCCceeEEEEEEEEE----CCEEEEEEEEcCCCc
Confidence 5678999999999999999999954221 1122334454444444444 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+++...+..+++.+|++++|+|+++ +|+.+.. .......+...++ .
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 145 (181)
T 3tw8_B 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG---I 145 (181)
T ss_dssp GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---C
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC---C
Confidence 9988888888999999999999987 6664322 1122233333334 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|+++++++|..
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 146 QLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp CEEECBTTTTBSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999988763
No 54
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.75 E-value=8.2e-18 Score=132.27 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=91.8
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecc-----cCCc
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSI-----LDGE 93 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~-----~~~~ 93 (257)
|...+..+..+|+++|++|+|||||+++|+...... .....+..+.. ...+.+.+. ..+.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNS--------------KFITTVGIDFREKRVVYRANGPDGAVGRGQ 68 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCCCCSEEEEEEEEEECTTSCCCSSCCCE
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCc--------------CcccccceeeeeEEEEEecCCcccccccCc
Confidence 333334567899999999999999999997632210 00111222221 112222210 0011
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHH
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEA 140 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~ 140 (257)
...+.||||||+++|...+...++.+|++|+|+|+++ +|+.+.. ..+
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 4789999999999999999999999999999999987 6653311 122
Q ss_pred HHHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 141 CEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++.+.++ .+++++||++|.|+++++++|..
T Consensus 149 ~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 149 EARELAEKYG---IPYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp HHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCEEEEECCCCCCHHHHHHHHHH
Confidence 2333443344 46999999999999999988763
No 55
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.75 E-value=3.6e-18 Score=133.74 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=88.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++.... ....|.......+.+.. ..+.+|||||+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-----------------~~~~t~g~~~~~~~~~~------~~l~i~Dt~G~ 70 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-----------------HITPTQGFNIKSVQSQG------FKLNVWDIGGQ 70 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-----------------EEEEETTEEEEEEEETT------EEEEEEECSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-----------------cccCcCCeEEEEEEECC------EEEEEEECCCC
Confidence 45678999999999999999999542110 00112111222344433 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN---- 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~---- 150 (257)
+.|...+..+++.+|++++|+|+++ +|+..... .+++.+.++
T Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~ 147 (181)
T 1fzq_A 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGLNLHTI 147 (181)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGC
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---HHHHHHHhCchhc
Confidence 9999999999999999999999986 66654321 122333322
Q ss_pred -CCccceEEecccccccccccccccCC
Q psy12244 151 -IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 -~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|+++++++|..
T Consensus 148 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 148 RDRVWQIQSCSALTGEGVQDGMNWVCK 174 (181)
T ss_dssp CSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCceEEEEccCCCCCCHHHHHHHHHH
Confidence 12356899999999999999988863
No 56
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.75 E-value=6.4e-18 Score=131.20 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=90.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|.+|+|||||+++|++...... .....+.+.....+.+ ++....+.||||||
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G 73 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGTRIIEV----SGQKIKLQIWDTAG 73 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEEEEEEE----TTEEEEEEEEECTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEE----CCeEEEEEEEECCC
Confidence 45678999999999999999999986432110 0111111222222222 33457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNI 151 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~ 151 (257)
++++...+..+++.+|++++|+|+++ +|+.... .++. +++.+.++
T Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~- 151 (179)
T 1z0f_A 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEA-KQFAEENG- 151 (179)
T ss_dssp GGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH-HHHHHHTT-
T ss_pred ChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHHcC-
Confidence 99999999999999999999999987 6663221 2222 22333233
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 152 --~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 152 --LLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp --CEEEECCTTTCTTHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHH
Confidence 4799999999999999988775
No 57
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=3.1e-18 Score=134.55 Aligned_cols=128 Identities=10% Similarity=0.055 Sum_probs=87.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|++..... ...|+......+.+.+ ..+.+|||||+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------~~~t~~~~~~~~~~~~------~~~~i~Dt~G~ 70 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-----------------TSPTIGSNVEEIVINN------TRFLMWDIGGQ 70 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-----------------EECCSCSSCEEEEETT------EEEEEEECCC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-----------------CcCCCccceEEEEECC------EEEEEEECCCC
Confidence 456789999999999999999997532110 0112223333444444 88999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~ 152 (257)
++|...+..+++.+|++++|+|+++ +|+.... .++..+.+... +...
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~ 150 (187)
T 1zj6_A 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDH 150 (187)
T ss_dssp ---CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSS
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCC
Confidence 9988888888999999999999986 6765432 33333333221 2223
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|.+
T Consensus 151 ~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (187)
T 1zj6_A 151 QWHIQACCALTGEGLCQGLEWMMS 174 (187)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CcEEEEccCCCCcCHHHHHHHHHH
Confidence 457999999999999999998874
No 58
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=136.31 Aligned_cols=130 Identities=13% Similarity=0.115 Sum_probs=89.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|.+|+|||||+++|++...... ....|+......+.+.+ ..+.||||||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------~~~~t~~~~~~~~~~~~------~~~~l~Dt~G 76 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ---------------NILPTIGFSIEKFKSSS------LSFTVFDMSG 76 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCS---------------SCCCCSSEEEEEEECSS------CEEEEEEECC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCC---------------CcCCccceeEEEEEECC------EEEEEEECCC
Confidence 34668999999999999999999965331110 11123333333444443 7899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCC-CHHHHHHHHH-HHh
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNA-NPEACEEQLQ-TLF 149 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~-~~~~~~~~~~-~~~ 149 (257)
+++|...+..+++.+|++++|+|+++ +|+... ..++..+.+. ..+
T Consensus 77 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 156 (190)
T 2h57_A 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI 156 (190)
T ss_dssp STTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC
T ss_pred CHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc
Confidence 99998888889999999999999986 555432 2233333222 111
Q ss_pred CCCccceEEecccccccccccccccC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+++++||++|.|+++++++|.
T Consensus 157 ~~~~~~~~~~Sa~~~~gi~~l~~~l~ 182 (190)
T 2h57_A 157 KDKPWHICASDAIKGEGLQEGVDWLQ 182 (190)
T ss_dssp CSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cCCceEEEEccCCCCcCHHHHHHHHH
Confidence 22345799999999999999998876
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=135.16 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=89.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++....... ...+..+.....+.+ ++....+.||||||+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 84 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTRTVML----GTAAVKAQIWDTAGL 84 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEEEEEE----TTEEEEEEEEEESCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 45789999999999999999999874322110 111122222222222 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
.+|...+...++.+|++|+|+|++. +|+.... .......+....+
T Consensus 85 ~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 161 (193)
T 2oil_A 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG--- 161 (193)
T ss_dssp CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT---
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC---
Confidence 9998888899999999999999987 5553221 1122222333223
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 162 LLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp CEEEEECTTTCTTHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHH
Confidence 4799999999999999998875
No 60
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.75 E-value=3.2e-18 Score=136.57 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=92.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|++|+|||||+++|++..... ...++++.+.....+.+ ++....+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN--------------DYISTIGVDFKIKTVEL----DGKTVKLQIWDTAGQ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT--------------TCCCSSCCCEEEEEEEE----TTEEEEEEEECCTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEE----CCEEEEEEEEeCCCh
Confidence 467899999999999999999997633211 11122333332333333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... ..+...++....+
T Consensus 68 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 144 (206)
T 2bcg_Y 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK--- 144 (206)
T ss_dssp TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC---
Confidence 9998888888999999999999987 7775432 1222333333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 145 ~~~~~~Sa~~g~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 145 MPFLETSALDSTNVEDAFLTMAR 167 (206)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 61
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.75 E-value=2.3e-18 Score=136.41 Aligned_cols=77 Identities=10% Similarity=0.106 Sum_probs=59.7
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCC--CHHHHHHH
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNA--NPEACEEQ 144 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~--~~~~~~~~ 144 (257)
..+.||||||+.+|...+..+++.+|++|+|+|+++ +|.... ..++..+.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~ 172 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKY 172 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHH
Confidence 789999999999999888999999999999999987 673211 12333322
Q ss_pred HHHHhCCCccceEEecccccccccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+. .. ..+++++||++|.|+++++++|.
T Consensus 173 ~~-~~---~~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 173 AQ-DN---NLLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp HH-HT---TCEEEEECTTTCTTHHHHHHHHH
T ss_pred HH-Hc---CCcEEEEecCCCCCHHHHHHHHH
Confidence 22 22 34799999999999999998876
No 62
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=5.6e-18 Score=132.65 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=91.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ......+.+.....+.+ ++....+.||||||+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD--------------DSNHTIGVEFGSKIINV----GGKYVKLQIWDTAGQ 69 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT--------------TCCCCSEEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceEEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 567899999999999999999997643211 11223333333333333 344478999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC---CHHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA---NPEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~---~~~~~~~~~~~~~~~~ 152 (257)
++|...+..+++.+|++++|+|+++ +|+... ...+. .++....
T Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~--- 145 (186)
T 2bme_A 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEA-SRFAQEN--- 145 (186)
T ss_dssp GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHT---
T ss_pred HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHHc---
Confidence 9999999999999999999999987 665321 12222 2222222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 146 ELMFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHH
Confidence 357999999999999999988763
No 63
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.75 E-value=2.7e-18 Score=135.55 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=88.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++.... ....|+......+.+.+ ..+.+|||||++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-----------------TLQPTWHPTSEELAIGN------IKFTTFDLGGHI 78 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-----------------CCCCCCSCEEEEEEETT------EEEEEEECCCSG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-----------------ccccCCCCCeEEEEECC------EEEEEEECCCCH
Confidence 4568999999999999999999763321 01123333334455544 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC----
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI---- 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~---- 151 (257)
++...+..+++.+|++++|+|+++ +|+.+.. ..+++++.++.
T Consensus 79 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 155 (190)
T 1m2o_B 79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV---SEAELRSALGLLNTT 155 (190)
T ss_dssp GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC---CHHHHHHHhCCcccc
Confidence 988877888899999999999987 6665421 12333443322
Q ss_pred --------CccceEEecccccccccccccccC
Q psy12244 152 --------DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 --------~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 156 GSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp C---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 345799999999999999998775
No 64
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=2e-18 Score=136.56 Aligned_cols=132 Identities=15% Similarity=0.108 Sum_probs=86.9
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
+.+...+..+|+++|++|+|||||+++|+..... ....|+......+.+.. ..+.+|
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~ 78 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTIPTIGFNVETVEYKN------ICFTVW 78 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-----------------EEEEETTEEEEEEEETT------EEEEEE
T ss_pred HHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-----------------ccCCcCceeEEEEEECC------EEEEEE
Confidence 3455567789999999999999999999532110 01123332233344433 889999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
||||+++|...+...++.+|++++|+|+++ +|+.... .+++.+.+...
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 158 (192)
T 2b6h_A 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ 158 (192)
T ss_dssp ECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 999999998888889999999999999986 6664432 23333222211
Q ss_pred -hCCCccceEEecccccccccccccccC
Q psy12244 149 -FNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 149 -~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
......+++++||++|.|+++++++|.
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 111234689999999999999998876
No 65
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=2.6e-18 Score=136.02 Aligned_cols=134 Identities=12% Similarity=0.091 Sum_probs=89.5
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
..+....++|+++|.+|+|||||+++|++...... ....|+......+.... ..+.|||
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---------------~~~~t~~~~~~~~~~~~------~~~~i~D 69 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---------------HITATVGYNVETFEKGR------VAFTVFD 69 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC-------------------CCCCCSSEEEEEEEETT------EEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---------------ccccccceeEEEEEeCC------EEEEEEE
Confidence 34556788999999999999999999964321110 01122222233333333 8899999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------------------cCCCCCC-HHHHH
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------------------VDLKNAN-PEACE 142 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------------~D~~~~~-~~~~~ 142 (257)
|||+++|...+..+++.+|++|+|+|+++ +|+.... .++..
T Consensus 70 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 149 (199)
T 4bas_A 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELV 149 (199)
T ss_dssp ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHH
T ss_pred CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHH
Confidence 99999999888889999999999999986 4443321 23333
Q ss_pred HHHHH--HhCCCccceEEecccccccccccccccCC
Q psy12244 143 EQLQT--LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 143 ~~~~~--~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.+.. .......+++++||++|.|+++++++|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 150 EILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 33221 11234467999999999999999998874
No 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=4.5e-18 Score=130.84 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=90.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++..... ...+..+.+.....+.+ ++....+.+|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~~~ 64 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE--------------NKEPTIGAAFLTQRVTI----NEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEE----TTEEEEEEEEEECCSGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEE----CCEEEEEEEEECCCChh
Confidence 4689999999999999999997643211 11122223322333333 33457899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC---C--HHHHHHHHHHHhCCC
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA---N--PEACEEQLQTLFNID 152 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~---~--~~~~~~~~~~~~~~~ 152 (257)
|...+...++.+|++++|+|+++ +|+... . ..+..+++....+
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-- 142 (170)
T 1ek0_A 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-- 142 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT--
T ss_pred hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC--
Confidence 99888999999999999999987 565322 1 1222333333334
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 143 -~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 143 -LLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHT
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.74 E-value=1.2e-17 Score=132.81 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=92.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|++|+|||||+++|+....... ....++.+.....+.+ ++....+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 67 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTIYR----NDKRIKLQIWDTAGL 67 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSC--------------CCCCCSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC--------------cCCccceeEEEEEEEE----CCeEEEEEEEECCCc
Confidence 4568999999999999999999975332110 0111122222222222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... ..+..+++.+.++
T Consensus 68 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 144 (203)
T 1zbd_A 68 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG--- 144 (203)
T ss_dssp GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT---
T ss_pred hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC---
Confidence 9999999999999999999999987 7775432 1233334444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~ 167 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVD 167 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999988864
No 68
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.74 E-value=4e-18 Score=134.52 Aligned_cols=142 Identities=16% Similarity=0.148 Sum_probs=91.4
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||++.+.+......... .. ........|+...+....+. ..++....+.+|||||
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~---~~---~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~i~Dt~G 83 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGE---MV---SLATEDERTLFFDFLPLDIG-EVKGFKTRFHLYTVPG 83 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCC---CE---EEECSSCEEEEEEECCSSCC-CSSSCEEEEEEEECCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhcccccccc---cc---ccccccccceeeeecccccc-cccCCceEEEEEeCCC
Confidence 35678999999999999999977754222110000 00 00000112322222111110 1245568899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
+++|...+..+++.+|++|+|+|+++ +|+..... .+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~ 160 (198)
T 3t1o_A 84 QVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP---VEMVRAVV 160 (198)
T ss_dssp CCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC---HHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC---HHHHHHHH
Confidence 99999999999999999999999982 66654322 22333333
Q ss_pred CCCcc-ceEEecccccccccccccccCC
Q psy12244 150 NIDKK-SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~~~~~-~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..... +++++||++|.|+++++++|..
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHH
Confidence 33334 7999999999999999988763
No 69
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=2.1e-18 Score=134.94 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=88.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|.+|+|||||+++|++.... ....|.......+.+.+ ..+.+|||||
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~Dt~G 74 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVV-----------------HTSPTIGSNVEEIVINN------TRFLMWDIGG 74 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCE-----------------EEECCSSSSCEEEEETT------EEEEEEEESS
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC-----------------ccCCcCceeeEEEEECC------EEEEEEECCC
Confidence 345679999999999999999999753221 01112222233344444 7899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNI 151 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~ 151 (257)
+++|...+..+++.+|++++|+|+++ +|+.... .++..+.+... +..
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~ 154 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 154 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccC
Confidence 99998888888999999999999987 6664422 23332222111 112
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 155 ~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 155 HQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CceEEEEccCCCCcCHHHHHHHHH
Confidence 234789999999999999998775
No 70
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=4.4e-18 Score=132.23 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=91.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++... ..+..+.++.+.....+.+.+ +....+.+|||||+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~~~---~~~~~~~~~Dt~G~ 66 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF--------------GKQYKQTIGLDFFLRRITLPG---NLNVTLQIWDIGGQ 66 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT--------------THHHHHTTTSSEEEEEEEETT---TEEEEEEEEECTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC--------------CCCCCCceeEEEEEEEEEeCC---CCEEEEEEEECCCC
Confidence 3567899999999999999999975321 122233333333334444421 23478999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
+.|...+..+++.+|++++|+|+++ +|+.+.. ..+..+.+.+.++
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 146 (178)
T 2hxs_A 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG 146 (178)
T ss_dssp CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC
Confidence 9998888899999999999999987 4443211 1122223333334
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 147 ---~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 147 ---FSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp ---CEEEEECTTTCTTHHHHHHHHHH
T ss_pred ---CcEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 71
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=3.5e-18 Score=131.49 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=89.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ......+.+.....+.+ ++....+.+|||||+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~ 65 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHE--------------FQESTIGAAFLTQTVCL----DDTTVKFEIWDTAGQ 65 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceEEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 356789999999999999999997632211 01111222222222322 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~ 152 (257)
.+|...+...++.+|++++|+|+++ +|+.... .++. .++....
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~-~~~~~~~--- 141 (170)
T 1r2q_A 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEA-QSYADDN--- 141 (170)
T ss_dssp GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHT---
T ss_pred HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHH-HHHHHHc---
Confidence 9999888899999999999999987 5653211 1222 2222222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 142 ~~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 142 SLLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 356999999999999999988763
No 72
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.74 E-value=1.6e-18 Score=137.76 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=83.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++.... ....|+......+.+.+ ..+.+|||||++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-----------------QHVPTLHPTSEELTIAG------MTFTTFDLGGHI 80 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-----------------------CCCCCSCEEEEETT------EEEEEEEECC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-----------------ccCCCCCceeEEEEECC------EEEEEEECCCcH
Confidence 4568999999999999999999532110 11123333344455544 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHHHh-----
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQTLF----- 149 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~~~----- 149 (257)
+|...+..+++.+|++++|+|+++ +|+... ..++..+.+....
T Consensus 81 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (198)
T 1f6b_A 81 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGK 160 (198)
T ss_dssp --CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCS
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccc
Confidence 988877888999999999999986 666542 2233222222110
Q ss_pred --------CCCccceEEecccccccccccccccC
Q psy12244 150 --------NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 --------~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+++++||++|.|+++++++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 161 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp SCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 01345799999999999999998876
No 73
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.74 E-value=1.8e-18 Score=135.23 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=69.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|++|+|||||+++|+.... ..+..++++.+.....+.+ ++....+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF--------------NSTFISTIGIDFKIRTIEL----DGKRIKLQIWDTAGQ 67 (183)
T ss_dssp SEEEEEEEECCCCC------------------------------CHHHHHCEEEEEEEEEE----TTEEEEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--------------CCCCCCcccceeEEEEEEE----CCEEEEEEEEcCCCC
Confidence 4578999999999999999999965221 1122333444443334443 345578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--- 144 (183)
T 2fu5_C 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG--- 144 (183)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT---
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC---
Confidence 9998888888999999999999987 7775422 1222233333344
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~ 167 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLAR 167 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 74
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.74 E-value=2e-18 Score=131.90 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=83.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+++|+++|++|+|||||+++|++..... .+...+.|.+.....+.+.+ ..+.+|||||+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~------~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-------------VADVPGVTRDLKEGVVETDR------GRFLLVDTGGLWS 61 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC------------------------CCEEEEEEETT------EEEEEEECGGGCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee-------------ccCCCCceecceEEEEEeCC------ceEEEEECCCCCC
Confidence 3689999999999999999998643211 11233445554444555544 6899999999987
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
+...+...++.+|++++|+|+++ +|+.+. .+++.+.......
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~~~~~~~~~~ 136 (161)
T 2dyk_A 62 GDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH-----ELYLGPLYGLGFG 136 (161)
T ss_dssp SSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG-----GGGCGGGGGGSSC
T ss_pred ccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc-----hHhHHHHHhCCCC
Confidence 45566778899999999999986 555332 1122222222223
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 137 ~~~~~Sa~~~~gv~~l~~~l~ 157 (161)
T 2dyk_A 137 DPIPTSSEHARGLEELLEAIW 157 (161)
T ss_dssp SCEECBTTTTBSHHHHHHHHH
T ss_pred CeEEEecccCCChHHHHHHHH
Confidence 689999999999999988765
No 75
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.74 E-value=1.3e-17 Score=130.73 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=89.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++...... ....+.+.....+.+ ++....+.||||||+
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------~~~t~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 62 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDE---------------YDPTIEDSYRKQVVI----DGETCLLDILDTAGQ 62 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCC---------------CCTTCCEEEEEEEEE----TTEEEEEEEEECCCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCC---------------CCCCchheEEEEEEE----CCcEEEEEEEECCCc
Confidence 3567899999999999999999986432110 001111111222222 445577899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++++|+|+++ +|+.... ..+..+.+.+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~--- 139 (189)
T 4dsu_A 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG--- 139 (189)
T ss_dssp ---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC---
Confidence 9999888899999999999999987 7775432 2344445555554
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~l~~ 162 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDAFYTLVR 162 (189)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 76
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.74 E-value=5.4e-18 Score=130.51 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=90.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ...+....+.....+.+ .+....+.+|||||+
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dt~G~ 65 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--------------NINPTIGASFMTKTVQY----QNELHKFLIWDTAGL 65 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceeEEEEEEEEEE----CCeEEEEEEEcCCCc
Confidence 356789999999999999999997643210 00111112222222222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++++|+|+++ +|+.... ..+..+.+.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~--- 142 (170)
T 1z0j_A 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH--- 142 (170)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---
T ss_pred hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC---
Confidence 9998888889999999999999987 6664321 1223333333333
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|++++++.|.
T Consensus 143 ~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 143 AIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp CEEEECBTTTTBSHHHHHHHHH
T ss_pred CEEEEEeCCCCcCHHHHHHHHH
Confidence 4699999999999999998876
No 77
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.74 E-value=1e-18 Score=139.28 Aligned_cols=131 Identities=13% Similarity=0.168 Sum_probs=90.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN--------------QYKATIGADFLTKEVMV----DDRLVTMQIWDTAGQ 67 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS--------------SCCCCCSEEEEEEEEES----SSCEEEEEEEEECSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCcccceEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 467899999999999999999997643211 01122333333333333 345578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC-HHHHHHHHHHHhC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN-PEACEEQLQTLFN 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~-~~~~~~~~~~~~~ 150 (257)
.+|...+..+++.+|++|+|+|+++ +|+.... ..+....+...
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-- 145 (207)
T 1vg8_A 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-- 145 (207)
T ss_dssp GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH--
T ss_pred HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh--
Confidence 9988877888899999999999876 6664322 11222222221
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|+++++++|..
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~ 171 (207)
T 1vg8_A 146 KNNIPYFETSAKEAINVEQAFQTIAR 171 (207)
T ss_dssp TTSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 23457999999999999999988864
No 78
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=4.8e-18 Score=135.96 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=91.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.....+|+++|++|+|||||+++|++..... +..++++.+.....+.+ ++....+.||||||
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~l~Dt~G 78 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNP--------------SFITTIGIDFKIKTVDI----NGKKVKLQLWDTAG 78 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCC--------------SSSCCCSCCEEEEEEEE----TTEEEEEEEECCTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCc--------------ccCCcccceEEEEEEEE----CCEEEEEEEEeCCC
Confidence 3456789999999999999999997633211 11122333333333333 34457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC-HHHHHHHHHHHhCCCc
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN-PEACEEQLQTLFNIDK 153 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~-~~~~~~~~~~~~~~~~ 153 (257)
+++|...+..++..+|++++|+|+++ +|+.... ..+..+.+.+.++
T Consensus 79 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 155 (213)
T 3cph_A 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG--- 155 (213)
T ss_dssp GGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT---
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC---
Confidence 99998888888999999999999986 6763221 1223334444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 156 ~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp CCEEECBTTTTBSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 36999999999999999988864
No 79
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=4.4e-18 Score=132.78 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=91.2
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+++|++|+|||||+++|+...... . ..+...... ...+.+ ++..+.+.|||||
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~------------~~~t~~~~~-~~~~~~----~~~~~~~~l~Dt~ 62 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVD--S------------YDPTIENTF-TKLITV----NGQEYHLQLVDTA 62 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCS--C------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECC
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCC--C------------CCCCccccE-EEEEEE----CCEEEEEEEEeCC
Confidence 44577899999999999999999997533110 0 001111111 222222 4455788999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
|+++|...+...++.+|++++|+|+++ +|+.+.. ..+..+.+.+.++
T Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (181)
T 3t5g_A 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN 142 (181)
T ss_dssp CCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred CchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhC
Confidence 999987777788899999999999987 6764332 1223333444444
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 143 ---~~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 143 ---AAFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp ---CEEEECCTTSHHHHHHHHHHHHH
T ss_pred ---CcEEEEecCCCCCHHHHHHHHHH
Confidence 46999999999999999988874
No 80
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=4.4e-18 Score=151.17 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=91.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+..++|+++|++|+|||||+|+|++...... +...|.|.+.....+.+.+ ..+.||||||+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-------------~~~~gtT~d~~~~~~~~~~------~~~~l~DT~G~ 233 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-------------SNVAGTTRDAVDTSFTYNQ------QEFVIVDTAGM 233 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-------------C---------CCEEEEETT------EEEEETTHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceee-------------cCCCCceeeeeEEEEEECC------eEEEEEECCCc
Confidence 4568999999999999999999986433221 2245677777666677665 67999999998
Q ss_pred ----------cccHHH-HHHhhhhcceEEEEEecCc--------------------------cCCCCCC---HHHHHHHH
Q psy12244 106 ----------VDFSNE-VTRSLAACQGVVLLIDANQ--------------------------VDLKNAN---PEACEEQL 145 (257)
Q Consensus 106 ----------~~~~~~-~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~---~~~~~~~~ 145 (257)
+.|... ...+++.+|++++|+|+++ +|+.+.+ .++..+++
T Consensus 234 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~ 313 (436)
T 2hjg_A 234 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENI 313 (436)
T ss_dssp TCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHH
T ss_pred CcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHH
Confidence 444433 3357889999999999987 7775443 24455566
Q ss_pred HHHhC-CCccceEEecccccccccccccccC
Q psy12244 146 QTLFN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+.+. ....|++++||++|.|++++++.+.
T Consensus 314 ~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~ 344 (436)
T 2hjg_A 314 RDHFQFLDYAPILFMSALTKKRIHTLMPAII 344 (436)
T ss_dssp HHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred HHhcccCCCCCEEEEecccCCCHHHHHHHHH
Confidence 65552 2356899999999999999987775
No 81
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=3.8e-18 Score=133.77 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=90.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++.. ... ...|+......+.+.. ..+.+|||||+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~---------------~~~t~~~~~~~~~~~~------~~~~~~Dt~G~ 72 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDT---------------ISPTLGFNIKTLEHRG------FKLNIWDVGGQ 72 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSS---------------CCCCSSEEEEEEEETT------EEEEEEEECCS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCc---------------ccccCccceEEEEECC------EEEEEEECCCC
Confidence 567899999999999999999996533 110 1112222233444444 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~ 152 (257)
++|...+...++.+|++++|+|+++ +|+.... .++..+.+... +...
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (186)
T 1ksh_A 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSH 152 (186)
T ss_dssp HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCC
Confidence 9998888888999999999999986 6765432 22222222211 1123
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|.+
T Consensus 153 ~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (186)
T 1ksh_A 153 HWRIQGCSAVTGEDLLPGIDWLLD 176 (186)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEEeeCCCCCCHHHHHHHHHH
Confidence 457999999999999999988863
No 82
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.73 E-value=4.9e-18 Score=136.54 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=91.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc------cCCccEEEE
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI------LDGEEYLLN 98 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~------~~~~~~~~~ 98 (257)
.++..+|+++|++|+|||||+++|+..... ......++.+.....+.+... .......+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFN--------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCC--------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCC--------------cCCCCceeEEEEEEEEEECCccccccccCceeEEEE
Confidence 356789999999999999999999753211 001112222222233333320 000147899
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHH
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQL 145 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~ 145 (257)
||||||+++|...+...++.+|++|+|+|+++ +|+.... ..+..+++
T Consensus 88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 167 (217)
T 2f7s_A 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167 (217)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence 99999999999999999999999999999987 5553211 12223334
Q ss_pred HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.++ .+++++||++|.|+++++++|..
T Consensus 168 ~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 168 ADKYG---IPYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp HHHTT---CCEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHCC---CcEEEEECCCCCCHHHHHHHHHH
Confidence 44334 46999999999999999988874
No 83
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=7.9e-18 Score=129.68 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=83.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.+|||||+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~ 65 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFND--------------KHITTLGASFLTKKLNI----GGKRVNLAIWDTAGQ 65 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCS--------------SCCCCCSCEEEEEEEES----SSCEEEEEEEECCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCc--------------CCCCccceEEEEEEEEE----CCEEEEEEEEECCCc
Confidence 456789999999999999999997643210 00112222222223332 445578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+++...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 142 (170)
T 1z08_A 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG--- 142 (170)
T ss_dssp -------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT---
T ss_pred HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcC---
Confidence 9998888888899999999999987 6663321 1122223333333
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 143 AKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHH
Confidence 5689999999999999998775
No 84
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.73 E-value=9.6e-19 Score=144.71 Aligned_cols=127 Identities=22% Similarity=0.303 Sum_probs=90.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+++|+++|++|+|||||+|+|++.... ....+|+|.+.....+.+.+ ..+.||||||+.+
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~--------------v~~~pg~Tv~~~~~~~~~~~------~~~~lvDtpG~~~ 60 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQR--------------VGNWPGVTVEKKTGEFLLGE------HLIEITDLPGVYS 60 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEE--------------EEECTTSSSEEEEEEEEETT------EEEEEEECCCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC--------------ccCCCCceEEEEEEEEEECC------eEEEEEeCCCccc
Confidence 368999999999999999999764211 11235677776667777665 6899999999988
Q ss_pred cHH----------HHHHhh--hhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhC
Q psy12244 108 FSN----------EVTRSL--AACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFN 150 (257)
Q Consensus 108 ~~~----------~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~ 150 (257)
+.. ....++ ..+|++|+|+|++. +|+.... .....+.+.+.++
T Consensus 61 ~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg 140 (256)
T 3iby_A 61 LVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLG 140 (256)
T ss_dssp CC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHC
T ss_pred ccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC
Confidence 754 233344 78999999999998 3332111 1111344555555
Q ss_pred CCccceEEecccccccccccccccCCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+|++++||++|.|++++++.|...
T Consensus 141 ---~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ---CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ---SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999988754
No 85
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=6e-18 Score=131.36 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=90.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.+|||||++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN--------------TYQATIGIDFLSKTMYL----EDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCceeeEEEEEEEEE----CCeEEEEEEEECCCcH
Confidence 45789999999999999999997633211 11223333333333333 3445789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~~ 153 (257)
+|...+...+..+|++++|+|+++ +|+.+.. .++.. .+...++
T Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~--- 150 (179)
T 2y8e_A 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE-RKAKELN--- 150 (179)
T ss_dssp GGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHH-HHHHHHT---
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHH-HHHHHcC---
Confidence 998888889999999999999986 5653221 22222 2222233
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 151 ~~~~~~Sa~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 151 VMFIETSAKAGYNVKQLFRRVAA 173 (179)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
No 86
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.73 E-value=8.9e-18 Score=128.90 Aligned_cols=127 Identities=15% Similarity=0.185 Sum_probs=87.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++.... .. ......... ...+.+ ++....+.+|||||+.+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~------------~~~t~~~~~-~~~~~~----~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EK------------YDPTIEDSY-RKQVEV----DCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CS------------CCCCSEEEE-EEEEES----SSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CC------------CCCCccceE-EEEEEE----CCEEEEEEEEECCChHH
Confidence 468999999999999999999763211 00 011111111 111222 44557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|+++ +|+.+.. ..+..+.+.+.+ ...
T Consensus 64 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~ 141 (167)
T 1c1y_A 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW--CNC 141 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--TSC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc--cCC
Confidence 99888899999999999999987 6664321 122222333332 245
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~ 162 (167)
T 1c1y_A 142 AFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHH
T ss_pred cEEEecCCCCCCHHHHHHHHH
Confidence 799999999999999988775
No 87
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=6.6e-18 Score=133.21 Aligned_cols=130 Identities=17% Similarity=0.160 Sum_probs=91.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|.+|+|||||+++|++...... ...|.........+.. ++....+.||||||+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPA----------------FVSTVGIDFKVKTVYR--HEKRVKLQIWDTAGQ 82 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCC----------------EEEEETTTEEEEEEEE--TTTTEEEEEECHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcc----------------cCCCeeeEEEEEEEEE--CCEEEEEEEEeCCCh
Confidence 3567999999999999999999986432110 0011111111122221 345588999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.|...+...++.+|++|+|+|+++ +|+.+.. .....+.+...++
T Consensus 83 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 159 (191)
T 3dz8_A 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG--- 159 (191)
T ss_dssp HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC---
Confidence 9999999999999999999999986 6664321 2233334444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 160 FDFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999988763
No 88
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=1.3e-17 Score=131.53 Aligned_cols=135 Identities=13% Similarity=0.216 Sum_probs=88.6
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
+..++..+.++|+++|++|+|||||+++|++..... ......+.|.... .+.+. ..+.+
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~t~~~~--~~~~~-------~~~~l 73 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLA------------RTSSKPGKTQTLN--FYIIN-------DELHF 73 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------------------CCEE--EEEET-------TTEEE
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCcc------------ccCCCCCceeeEE--EEEEC-------CcEEE
Confidence 455666778899999999999999999997532100 0111223333221 11221 25889
Q ss_pred eCCCC----------CcccHHHHHHhhhhc---ceEEEEEecCc--------------------------cCCCCCC-HH
Q psy12244 100 IDTPG----------HVDFSNEVTRSLAAC---QGVVLLIDANQ--------------------------VDLKNAN-PE 139 (257)
Q Consensus 100 iDtpG----------~~~~~~~~~~~~~~a---D~~ilVvd~~~--------------------------~D~~~~~-~~ 139 (257)
||||| ++.|...+..+++.+ |++++|+|++. +|+.... ..
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~ 153 (195)
T 1svi_A 74 VDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWD 153 (195)
T ss_dssp EECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH
T ss_pred EECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHH
Confidence 99999 555665566666665 99999999886 6775433 34
Q ss_pred HHHHHHHHHhCC-CccceEEecccccccccccccccC
Q psy12244 140 ACEEQLQTLFNI-DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 140 ~~~~~~~~~~~~-~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++.+.. ...+++++||++|.|+++++++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 154 KHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp HHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHH
Confidence 445566665543 346799999999999999998775
No 89
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.73 E-value=2.2e-17 Score=128.96 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=90.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+...... . ....+.... ...+.+ ++....+.+|||||+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~------------~~~t~~~~~-~~~~~~----~~~~~~l~i~Dt~G~ 76 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVD--D------------YDPTIEDSY-LKHTEI----DNQWAILDVLDTAGQ 76 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS--C------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECCSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--C------------CCCCcccee-EEEEEe----CCcEEEEEEEECCCc
Confidence 456789999999999999999998532111 0 011111111 122222 445577889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
++|...+..+++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-- 154 (183)
T 3kkq_A 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-- 154 (183)
T ss_dssp GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC--
Confidence 9998888889999999999999987 6764422 2233334444444
Q ss_pred ccceEEeccc-ccccccccccccC
Q psy12244 153 KKSVLRIWHR-RCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~-~g~gi~~l~~~i~ 175 (257)
.+++++||+ +|.|++++++.|.
T Consensus 155 -~~~~~~Sa~~~~~~v~~l~~~l~ 177 (183)
T 3kkq_A 155 -IPYIETSAKDPPLNVDKTFHDLV 177 (183)
T ss_dssp -CCEEEEBCSSSCBSHHHHHHHHH
T ss_pred -CeEEEeccCCCCCCHHHHHHHHH
Confidence 569999999 9999999998775
No 90
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.73 E-value=1.1e-17 Score=129.98 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=89.9
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+++|++|+|||||+++|++.... .. ....+.... ...+.+ ++....+.|||||
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~------------~~~t~~~~~-~~~~~~----~~~~~~~~~~Dt~ 65 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SD------------YDPTIEDSY-TKICSV----DGIPARLDILDTA 65 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SS------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cc------------cCCCcCceE-EEEEEE----CCEEEEEEEEECC
Confidence 3456789999999999999999999864211 00 011111111 122222 3445789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
|+.+|...+...++.+|++++|+|+++ +|+.... .....+.+....
T Consensus 66 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~- 144 (181)
T 2fn4_A 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH- 144 (181)
T ss_dssp CTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-
T ss_pred CchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-
Confidence 999998888888999999999999987 5553211 122223333333
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 145 --~~~~~~~Sa~~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 145 --HVAYFEASAKLRLNVDEAFEQLVR 168 (181)
T ss_dssp --TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred --CCeEEEecCCCCCCHHHHHHHHHH
Confidence 346999999999999999988864
No 91
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-17 Score=131.80 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=90.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+...... ...+.++.+.....+.+ ++....+.||||||+
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 74 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--------------ELAATIGVDFKVKTISV----DGNKAKLAIWDTAGQ 74 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEE----TTEEEEEEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--------------cCCCccceEEEEEEEEE----CCeEEEEEEEeCCCc
Confidence 356789999999999999999997643211 11122222222233333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH-HHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP-EACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~-~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++|+|+|+++ +|+..... .+...++.+..+
T Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 151 (195)
T 1x3s_A 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS--- 151 (195)
T ss_dssp GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT---
T ss_pred hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcC---
Confidence 9998888899999999999999987 66633221 122222333233
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHH
Confidence 46999999999999999988864
No 92
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.72 E-value=1.1e-17 Score=128.63 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=88.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|++|+|||||+++|+...... .....++.+.....+.+ ++....+.+|||||+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 64 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTK--------------DYKKTIGVDFLERQIQV----NDEDVRLMLWDTAGQ 64 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCC--------------CSSCCCSSSEEEEEEEE----TTEEEEEEEECCTTG
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceEEEEEEEEEEE----CCEEEEEEEEcCCCc
Confidence 456789999999999999999997632110 00111122222222332 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.+|...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.++ .
T Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 141 (168)
T 1z2a_A 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK---L 141 (168)
T ss_dssp GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT---C
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC---C
Confidence 9988888888999999999999987 5653321 1222233333344 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 142 ~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 142 RFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEECBTTTTBSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 699999999999999988775
No 93
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=2.5e-17 Score=126.12 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=87.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+....... ...... ......+.+ ++....+.+|||||+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~-~~~~~~~~~----~~~~~~~~l~D~~G~~~ 63 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEK--------------YDPTIE-DFYRKEIEV----DSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSC--------------CCTTCC-EEEEEEEEE----TTEEEEEEEEECCCTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCccc--------------CCCCcc-eeEEEEEEE----CCEEEEEEEEECCCchh
Confidence 46899999999999999999976332110 001111 111122222 34457799999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+...+...++.+|++++|+|+.+ +|+.... .....+++.+.++ .
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 140 (167)
T 1kao_A 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG---C 140 (167)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---S
T ss_pred hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC---C
Confidence 99999999999999999999987 5653211 1222233333344 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 141 ~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 141 PFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHH
T ss_pred CEEEecCCCCcCHHHHHHHHH
Confidence 699999999999999988775
No 94
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=1.9e-17 Score=132.88 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=59.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++.... . ...+.......+.+.. .....+.+|||||+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~---~~~~~~~i~Dt~G~ 64 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR--D---------------TQTSITDSSAIYKVNN---NRGNSLTLIDLPGH 64 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC--C---------------BCCCCSCEEEEEECSS---TTCCEEEEEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc--c---------------ccCCcceeeEEEEecC---CCccEEEEEECCCC
Confidence 45678999999999999999999864311 0 0111112222233331 12478999999999
Q ss_pred cccHH-HHHHhhhhcceEEEEEecCc
Q psy12244 106 VDFSN-EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~~~~-~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+|.. .+..+++.+|++|+|+|++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 65 ESLRFQLLDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred hhHHHHHHHHHHhhCCEEEEEEECCC
Confidence 99987 66777899999999999976
No 95
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.72 E-value=9.6e-19 Score=141.23 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=89.8
Q ss_pred CCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcC-ccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTG-TVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 19 ~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~-~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.|...+..+.++|+++|.+|+|||||+|+|++... ... ....+.|.......+. ......+
T Consensus 20 ~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~-----~~~~~~~ 81 (223)
T 4dhe_A 20 HLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFA-------------SKTPGRTQHINYFSVG-----PAAEPVA 81 (223)
T ss_dssp SGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCT-------------TCCCCSCCCEEEEEES-----CTTSCSE
T ss_pred chhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceee-------------cCCCCcccceEEEEec-----CCCCCcE
Confidence 45566667788999999999999999999976431 111 1122344433222222 1223678
Q ss_pred EEeCCCCCcc----------cHHHHHHhhhh---cceEEEEEecCc--------------------------cCCCCCC-
Q psy12244 98 NLIDTPGHVD----------FSNEVTRSLAA---CQGVVLLIDANQ--------------------------VDLKNAN- 137 (257)
Q Consensus 98 ~liDtpG~~~----------~~~~~~~~~~~---aD~~ilVvd~~~--------------------------~D~~~~~- 137 (257)
.||||||+.+ |...+..+++. +|++++|+|+.. +|+....
T Consensus 82 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 82 HLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp EEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHH
T ss_pred EEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhh
Confidence 8999999633 34444444444 888999999986 6664422
Q ss_pred HHHHHHHHHHHhC-------CCccceEEecccccccccccccccCC
Q psy12244 138 PEACEEQLQTLFN-------IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 ~~~~~~~~~~~~~-------~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.....+.+.+.+. ....+++++||++|.|+++++++|..
T Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 162 SINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 2223333333321 24567999999999999999998874
No 96
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.5e-17 Score=130.02 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=93.8
Q ss_pred CCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEe-ceeeEEEeecccCCccEE
Q psy12244 18 TPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK-AQTASLRYTSILDGEEYL 96 (257)
Q Consensus 18 ~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~~~~~ 96 (257)
..|...+..+..+|+++|++|+|||||+++|++.... .. ...|.. .....+.+ ++..+.
T Consensus 8 ~~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~--~~--------------~~~t~~~~~~~~~~~----~~~~~~ 67 (194)
T 2atx_A 8 SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFP--EE--------------YVPTVFDHYAVSVTV----GGKQYL 67 (194)
T ss_dssp -CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCC--CS--------------CCCSSCCCEEEEEES----SSCEEE
T ss_pred cccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCC--CC--------------CCCcccceeEEEEEE----CCEEEE
Confidence 3466666677889999999999999999999864211 10 001111 11112222 445578
Q ss_pred EEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---------
Q psy12244 97 LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------- 137 (257)
Q Consensus 97 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------- 137 (257)
+.||||||+++|...+..+++.+|++++|+|+++ +|+....
T Consensus 68 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 147 (194)
T 2atx_A 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDM 147 (194)
T ss_dssp EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTT
T ss_pred EEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccc
Confidence 9999999999998888888999999999999987 6765421
Q ss_pred -----HHHHHHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 138 -----PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 -----~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+...++.+.++. .+++++||++|.|+++++++|..
T Consensus 148 ~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 148 KEKPICVEQGQKLAKEIGA--CCYVECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp TCCCCCHHHHHHHHHHHTC--SCEEECCTTTCTTHHHHHHHHHH
T ss_pred cCcccCHHHHHHHHHHcCC--cEEEEeeCCCCCCHHHHHHHHHH
Confidence 01112223333332 36999999999999999987763
No 97
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-17 Score=131.99 Aligned_cols=130 Identities=14% Similarity=0.186 Sum_probs=89.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|++...... .....+.+. ....+.+ ++....+.||||||+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~------------~~~~~~~~~--~~~~~~~----~~~~~~~~i~Dt~G~ 82 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN------------ISPTIGASF--MTKTVPC----GNELHKFLIWDTAGQ 82 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT------------CCCCSSEEE--EEEEEEC----SSSEEEEEEEEECCS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC------------cCCCcceeE--EEEEEEe----CCEEEEEEEEcCCCc
Confidence 4678999999999999999999976431100 000112221 1222222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.+ .
T Consensus 83 ~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~---~ 159 (192)
T 2fg5_A 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI---G 159 (192)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT---T
T ss_pred hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc---C
Confidence 9999888899999999999999987 5653211 112222233222 3
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 160 AIVVETSAKNAINIEELFQGISR 182 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEeCCCCcCHHHHHHHHHH
Confidence 57999999999999999998874
No 98
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.72 E-value=2e-17 Score=127.35 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=79.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++..... ......+.+.....+.+ ++....+.+|||||+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDH--------------AHEMENSEDTYERRIMV----DKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------------------CEEEEEEEE----TTEEEEEEEECCCCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcc--------------cccCCCcCCeeeEEEEE----CCeEEEEEEEECCCccc
Confidence 4689999999999999999996432211 01111222222222333 45567899999999998
Q ss_pred cHH-HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 108 FSN-EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~-~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.. .....++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 140 (169)
T 3q85_A 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS--- 140 (169)
T ss_dssp ------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT---
T ss_pred cchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC---
Confidence 876 44556788999999999987 6664221 1222333444333
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|++++++.+.
T Consensus 141 ~~~~~~Sa~~~~~v~~l~~~l~ 162 (169)
T 3q85_A 141 CKHIETSAALHHNTRELFEGAV 162 (169)
T ss_dssp CEEEECBTTTTBSHHHHHHHHH
T ss_pred CcEEEecCccCCCHHHHHHHHH
Confidence 4799999999999999988775
No 99
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.72 E-value=7.8e-18 Score=132.60 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=89.7
Q ss_pred CCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 19 ~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
.+...+....++|+++|.+|+|||||+++|++........ ..+.|.... .... . ..+.
T Consensus 14 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------------~~~~t~~~~--~~~~-~------~~~~ 71 (195)
T 3pqc_A 14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-------------TPGKTRSIN--FYLV-N------SKYY 71 (195)
T ss_dssp STTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-------------SCCCCCCEE--EEEE-T------TTEE
T ss_pred ChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-------------CCCCccCeE--EEEE-C------CcEE
Confidence 3445666677899999999999999999997644211111 122222211 1111 1 3577
Q ss_pred EeCCCC----------CcccHHHHHHhhhh---cceEEEEEecCc--------------------------cCCCCCC-H
Q psy12244 99 LIDTPG----------HVDFSNEVTRSLAA---CQGVVLLIDANQ--------------------------VDLKNAN-P 138 (257)
Q Consensus 99 liDtpG----------~~~~~~~~~~~~~~---aD~~ilVvd~~~--------------------------~D~~~~~-~ 138 (257)
+||||| +..+...+..+++. +|++++|+|+.. +|+.... .
T Consensus 72 i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~ 151 (195)
T 3pqc_A 72 FVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSER 151 (195)
T ss_dssp EEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH
T ss_pred EEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHH
Confidence 999999 44455555555554 499999999876 6775432 4
Q ss_pred HHHHHHHHHHhCC-CccceEEecccccccccccccccC
Q psy12244 139 EACEEQLQTLFNI-DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+...+++++.+.. ...+++++||++|.|+++++++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 189 (195)
T 3pqc_A 152 AKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIS 189 (195)
T ss_dssp HHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 5555566655532 446799999999999999998876
No 100
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=4.3e-17 Score=124.98 Aligned_cols=126 Identities=15% Similarity=0.207 Sum_probs=84.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++..... . ...... ......+.+ ++..+.+.+|||||+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~------------~~~t~~-~~~~~~~~~----~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVE--D------------YEPTKA-DSYRKKVVL----DGEEVQIDILDTAGQE 63 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS--C------------CCTTCC-EEEEEEEEE----TTEEEEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCC--C------------CCCCcc-eEEEEEEEE----CCEEEEEEEEECCCcc
Confidence 35789999999999999999998643110 0 001111 111112222 3445789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC---CHHHHHHHHHHHhCCC
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA---NPEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~---~~~~~~~~~~~~~~~~ 152 (257)
++...+..+++.+|++++|+|+++ +|+.+. ..++..+ +.+.++
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~-- 140 (168)
T 1u8z_A 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RADQWN-- 140 (168)
T ss_dssp -CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-HHHHHT--
T ss_pred hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH-HHHHcC--
Confidence 999999999999999999999986 565322 1222222 222233
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 141 -~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 141 -VNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHH
T ss_pred -CeEEEeCCCCCCCHHHHHHHHH
Confidence 4699999999999999998775
No 101
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.71 E-value=1.7e-17 Score=127.35 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=72.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++..... .....+.+.. ..+.+ ++....+.+|||||++.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~~~---~~~~~----~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-------------EAEAAGHTYD---RSIVV----DGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------------------CEEE---EEEEE----TTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-------------CCCccccceE---EEEEE----CCEEEEEEEEECCCCcc
Confidence 4689999999999999999995321110 0111222221 11222 45567899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|.......++.+|++++|+|+++ +|+.+.. ..+..+.+...++ .
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 138 (166)
T 3q72_A 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD---C 138 (166)
T ss_dssp -----------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT---C
T ss_pred chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC---C
Confidence 98888889999999999999986 7775432 2222333444333 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 139 ~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 139 KFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EEEECBGGGTBSHHHHHHHHH
T ss_pred cEEEeccCCCCCHHHHHHHHH
Confidence 799999999999999998775
No 102
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=128.77 Aligned_cols=129 Identities=14% Similarity=0.187 Sum_probs=90.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|++..... . ....+.......+.+ ++..+.+.||||||
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~-------------~~~t~~~~~~~~~~~----~~~~~~~~l~Dt~G 71 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE--D-------------YEPTKADSYRKKVVL----DGEEVQIDILDTAG 71 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT--T-------------CCTTCCEEEEEEEEE----TTEEEEEEEEECCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC--C-------------CCCccceEEEEEEEE----CCEEEEEEEEcCCC
Confidence 3457899999999999999999997643110 0 001111111122222 34457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC---CHHHHHHHHHHHhC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA---NPEACEEQLQTLFN 150 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~---~~~~~~~~~~~~~~ 150 (257)
+.+|...+..+++.+|++++|+|+++ +|+... ..++..+ +.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~ 150 (206)
T 2bov_A 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQWN 150 (206)
T ss_dssp TTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHHHT
T ss_pred hhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH-HHHHhC
Confidence 99999999999999999999999986 666432 1222222 223333
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 151 ---~~~~~~Sa~~g~gi~~l~~~l~~ 173 (206)
T 2bov_A 151 ---VNYVETSAKTRANVDKVFFDLMR 173 (206)
T ss_dssp ---CEEEEECTTTCTTHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988864
No 103
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=6.9e-18 Score=134.22 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=88.6
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
.++..+..+|+++|.+|+|||||+++|++...... ......... ...+.+ ++..+.+.|||
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~-~~~~~~----~~~~~~~~l~D 78 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--------------YDPTVENTY-SKIVTL----GKDEFHLHLVD 78 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--------------CCCCSEEEE-EEEEC--------CEEEEEEE
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--------------CCCccceEE-EEEEEE----CCEEEEEEEEE
Confidence 45566788999999999999999999986432110 011111111 111111 34457899999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHH
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTL 148 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~ 148 (257)
|||+++|...+..+++.+|++++|+|+++ +|+.... .....+.+...
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 158 (201)
T 3oes_A 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158 (201)
T ss_dssp ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH
Confidence 99999988888888999999999999986 6664322 12223344444
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++ .+++++||++|.|++++++.|..
T Consensus 159 ~~---~~~~~~Sa~~~~~v~~l~~~l~~ 183 (201)
T 3oes_A 159 WG---ATFMESSARENQLTQGIFTKVIQ 183 (201)
T ss_dssp HT---CEEEECCTTCHHHHHHHHHHHHH
T ss_pred hC---CeEEEEeCCCCCCHHHHHHHHHH
Confidence 44 36999999999999999988874
No 104
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=7.8e-18 Score=133.94 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=86.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+..... ......++.+.....+.+ ++....+.||||||+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK--------------QDSNHTIGVEFGSRVVNV----GGKTVKLQIWDTAGQ 84 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------------------CCEEEEEEEE----TTEEEEEEEECCTTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC--------------ccCCCcccceeEEEEEEE----CCeeeEEEEEcCCCc
Confidence 46789999999999999999999753211 111222232222233333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~ 152 (257)
.+|...+...++.+|++|+|+|+++ +|+.... ..+. ..+.+..+
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~-- 161 (200)
T 2o52_A 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQENE-- 161 (200)
T ss_dssp HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTT--
T ss_pred HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHHcC--
Confidence 9888778888999999999999987 5653211 1222 22222223
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 162 -~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 162 -LMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp -CEEEEECTTTCTTHHHHHHHHHH
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHH
Confidence 56999999999999999988864
No 105
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=126.86 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=80.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++...... ....|.+.. ...+.+ ++....+.+|||||+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-------------~~~~~~~~~--~~~~~~----~~~~~~~~~~D~~g~~ 63 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-------------HEQLGEDVY--ERTLTV----DGEDTTLVVVDTWEAE 63 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------------------CCCSSSSEE--EEEEEE----TTEEEEEEEECCC---
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-------------cCcccccee--EEEEEE----CCEEEEEEEEecCCCC
Confidence 467899999999999999999975322110 001222221 222223 3445789999999998
Q ss_pred c--cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-H-HHHHHHHHHHhCC
Q psy12244 107 D--FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-P-EACEEQLQTLFNI 151 (257)
Q Consensus 107 ~--~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~-~~~~~~~~~~~~~ 151 (257)
. +.......++.+|++++|+|+++ +|+.+.. . .+..+.+...++
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~- 142 (175)
T 2nzj_A 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD- 142 (175)
T ss_dssp ----CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-
T ss_pred ccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcC-
Confidence 8 45555667788999999999987 6765422 1 122223333333
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 143 --~~~~~~Sa~~g~gi~~l~~~l~ 164 (175)
T 2nzj_A 143 --CKFIETSATLQHNVAELFEGVV 164 (175)
T ss_dssp --SEEEECBTTTTBSHHHHHHHHH
T ss_pred --CeEEEEecCCCCCHHHHHHHHH
Confidence 4699999999999999998876
No 106
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.71 E-value=6.2e-17 Score=127.27 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=80.0
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
...+..+..+|+++|.+|+|||||+++|+...... . ... .+.......+.+ ++..+.+.||
T Consensus 14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~------------~~~-t~~~~~~~~~~~----~~~~~~~~l~ 74 (190)
T 3con_A 14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVD--E------------YDP-TIEDSYRKQVVI----DGETCLLDIL 74 (190)
T ss_dssp -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--C------------CCT-TCCEEEEEEEEE----TTEEEEEEEE
T ss_pred ccccccceeEEEEECcCCCCHHHHHHHHHcCCCcc--c------------cCC-ccceEEEEEEEE----CCEEEEEEEE
Confidence 33334456799999999999999999998643210 0 000 111111112222 3445789999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
||||+.+|...+..++..+|++++|+|+++ +|+.... ..+..+++.+.
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 154 (190)
T 3con_A 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS 154 (190)
T ss_dssp ECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH
Confidence 999999999888899999999999999987 6764321 22233334444
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++ .+++++||++|.|+++++++|..
T Consensus 155 ~~---~~~~~~Sa~~~~gi~~l~~~l~~ 179 (190)
T 3con_A 155 YG---IPFIETSAKTRQGVEDAFYTLVR 179 (190)
T ss_dssp HT---CCEEECCTTTCTTHHHHHHHHHH
T ss_pred cC---CeEEEEeCCCCCCHHHHHHHHHH
Confidence 44 36999999999999999988763
No 107
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.71 E-value=1.5e-18 Score=152.74 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=93.4
Q ss_pred CCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 19 ~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
.|...+....++|+++|++|+|||||+++|++.... ..+...+.|.+.....+.+... ..+.
T Consensus 25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~-------------~~~~~~gtT~d~~~~~~~~~~~-----~~l~ 86 (423)
T 3qq5_A 25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVS-------------IVSDYAGTTTDPVYKSMELHPI-----GPVT 86 (423)
T ss_dssp CCCC---CCCEEEEEECSCSTTTTTTTTSSCC--------------------------CCCCEEEEEETTT-----EEEE
T ss_pred ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCC-------------ccCCCCCeeeeeEEEEEEECCC-----CeEE
Confidence 455666777899999999999999999999653321 1234567787777777776541 4899
Q ss_pred EeCCCCCcccH-------HHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHH
Q psy12244 99 LIDTPGHVDFS-------NEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQT 147 (257)
Q Consensus 99 liDtpG~~~~~-------~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~ 147 (257)
||||||+.+|. ..+...+..+|++|+|+|+.. +|+...+..+..+++.+
T Consensus 87 liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~ 166 (423)
T 3qq5_A 87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES 166 (423)
T ss_dssp EEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC
T ss_pred EEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH
Confidence 99999998763 335667889999999999954 77765544433334333
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.++ .+++++||++|.|++++++.|..
T Consensus 167 ~~g---~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 167 RYE---AKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp CTT---CCCCCCSSCCTTSTTTHHHHHHH
T ss_pred HcC---CCEEEEECCCCCCHHHHHHHHHH
Confidence 333 47999999999999999988874
No 108
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=3.4e-17 Score=146.23 Aligned_cols=132 Identities=18% Similarity=0.277 Sum_probs=95.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG- 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG- 104 (257)
....+|+++|++|+|||||+|+|++...... +...++|.+.....+.+.+ ..+.||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~-------------~~~~gtt~~~~~~~~~~~~------~~~~l~DT~G~ 253 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-------------SNVAGTTRDAVDTSFTYNQ------QEFVIVDTAGM 253 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-------------CC------CTTSEEEEETT------EEEEETTGGGT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcccc-------------CCCCCeEEEEEEEEEEECC------ceEEEEECCCC
Confidence 4568899999999999999999986433222 1245667776666676665 6899999999
Q ss_pred ---------CcccHHHH-HHhhhhcceEEEEEecCc--------------------------cCCCCCC---HHHHHHHH
Q psy12244 105 ---------HVDFSNEV-TRSLAACQGVVLLIDANQ--------------------------VDLKNAN---PEACEEQL 145 (257)
Q Consensus 105 ---------~~~~~~~~-~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~---~~~~~~~~ 145 (257)
++.|.... ..+++.+|++|+|+|++. +|+.+.+ .++..+.+
T Consensus 254 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~ 333 (456)
T 4dcu_A 254 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENI 333 (456)
T ss_dssp TTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHH
T ss_pred CcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHH
Confidence 56666543 357889999999999987 7875433 35556666
Q ss_pred HHHhC-CCccceEEecccccccccccccccCC
Q psy12244 146 QTLFN-IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~-~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++.+. ....+++++||++|.|++++++.+..
T Consensus 334 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 334 RDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp HHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHhcccCCCCCEEEEcCCCCcCHHHHHHHHHH
Confidence 66553 23468999999999999999988763
No 109
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=4.4e-17 Score=125.48 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=86.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++..... . .. .|....+.. .... ++....+.+|||||+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~------------~~--~t~~~~~~~-~~~~--~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE--S------------YI--PTVEDTYRQ-VISC--DKSICTLQITDTTGSH 62 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCS--S------------CC--CCSCEEEEE-EEEE--TTEEEEEEEEECCSCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--C------------CC--CCccccEEE-EEEE--CCEEEEEEEEECCCch
Confidence 35789999999999999999997532110 0 00 111111111 1111 3444789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
+|...+..++..+|++++|+|+++ +|+.... .....+.+...++
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-- 140 (172)
T 2erx_A 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-- 140 (172)
T ss_dssp SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT--
T ss_pred hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC--
Confidence 999999999999999999999987 5543211 1122223333333
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|.+
T Consensus 141 -~~~~~~Sa~~~~gi~~l~~~l~~ 163 (172)
T 2erx_A 141 -CAFMETSAKLNHNVKELFQELLN 163 (172)
T ss_dssp -CEEEECBTTTTBSHHHHHHHHHH
T ss_pred -CeEEEecCCCCcCHHHHHHHHHH
Confidence 46999999999999999998874
No 110
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=128.60 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=88.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.....+|+++|.+|+|||||+++|++..... ...++.+.+.....+.+ ++....+.+|||||
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~l~i~Dt~g 81 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDS--------------AHEPENPEDTYERRIMV----DKEEVTLVVYDIWE 81 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCG--------------GGTTTSCTTEEEEEEEE----TTEEEEEEEECCCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCc--------------cCCCCcccceEEEEEEE----CCEEEEEEEEecCC
Confidence 3467899999999999999999995422211 01122222222223333 44557899999999
Q ss_pred CcccHH-HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 105 HVDFSN-EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 105 ~~~~~~-~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
+..+.. ....+++.+|++|+|+|+++ +|+.... ..+..+++.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~ 161 (195)
T 3cbq_A 82 QGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS 161 (195)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred CccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhC
Confidence 998765 55667889999999999986 6664322 1122223343333
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 162 ---~~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 162 ---CKHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp ---CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred ---CEEEEEcCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 111
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.70 E-value=1.6e-16 Score=121.43 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=88.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+...... . ...... ......+.+ ++..+.+.+|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~------------~~~~~~-~~~~~~~~~----~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--E------------CDPTIE-DSYRKQVVI----DGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS--C------------CCTTCC-EEEEEEEEE----TTEEEEEEEEECCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc--c------------cCCccc-eEEEEEEEE----CCEEEEEEEEECCCchh
Confidence 4689999999999999999997642211 0 000011 111112222 34457899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~ 155 (257)
+...+...+..+|++++|+|+++ +|+.... ..+..+++.+.++ .+
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~ 140 (166)
T 2ce2_X 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG---IP 140 (166)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT---CC
T ss_pred hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC---Ce
Confidence 99888889999999999999986 6764422 2333344444444 36
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|+++++++|.
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 141 YIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEEECTTTCTTHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988775
No 112
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=143.49 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=86.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+|+|++|+|||||+++|+.... . . ...|+......+.+.. ..+.||||||+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~--~--------~-------~~pT~~~~~~~~~~~~------~~l~i~Dt~G~ 219 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEI--V--------T-------TIPTIGFNVETVEYKN------ISFTVWDVGGQ 219 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCC--E--------E-------EEEETTEEEEEEEETT------EEEEEEECC--
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCC--C--------C-------cccccceEEEEEecCc------EEEEEEECCCC
Confidence 4566899999999999999999954211 0 0 0123333344444444 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHh-CCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLF-NID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~-~~~ 152 (257)
+.|...+..+++.+|++|+|+|+++ +|+.+.. .+++.+.+.... ...
T Consensus 220 ~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~ 299 (329)
T 3o47_A 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 299 (329)
T ss_dssp ---CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSS
T ss_pred HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcC
Confidence 9999888999999999999999976 6775442 333333332211 123
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.||+++++.|..
T Consensus 300 ~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 300 NWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCEEEEEECCCCcCHHHHHHHHHH
Confidence 457999999999999999988763
No 113
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.70 E-value=4.6e-18 Score=131.11 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=81.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++.... ....++.|.+.....+.+.+ ..+.+|||||+.+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~------~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY--------------IGNWPGVTVEKKEGEFEYNG------EKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS--------------CC-----CCCCCEEEEEETT------EEEEEEECCCCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee--------------ccCCCCcceeeeEEEEEECC------cEEEEEECCCccc
Confidence 468999999999999999999653211 01123455555455555544 7899999999988
Q ss_pred cH------HHHHHhhh--hcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhCCCcc
Q psy12244 108 FS------NEVTRSLA--ACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~------~~~~~~~~--~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~~~~~ 154 (257)
|. .....+++ .+|++++|+|+.. +|+.... .....+++.+.++ .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~ 139 (165)
T 2wji_A 63 LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG---V 139 (165)
T ss_dssp SSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---S
T ss_pred CCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhC---C
Confidence 64 22333443 7899999999986 3321100 0001233444444 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++.|.
T Consensus 140 ~~~~~SA~~~~~v~~l~~~l~ 160 (165)
T 2wji_A 140 KVVPLSAAKKMGIEELKKAIS 160 (165)
T ss_dssp CEEECBGGGTBSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 699999999999999998775
No 114
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=8.2e-17 Score=125.75 Aligned_cols=128 Identities=15% Similarity=0.205 Sum_probs=88.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+...... . ... .+.......+.+ ++..+.+.||||||+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~------------~~~-t~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 76 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--D------------YEP-TKADSYRKKVVL----DGEEVQIDILDTAGQ 76 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCC--S------------CCT-TCCEEEEEEEEE----TTEEEEEEEEECCCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC--c------------CCC-ccceEEEEEEEE----CCEEEEEEEEECCCC
Confidence 356899999999999999999998643110 0 001 111111112222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC---CHHHHHHHHHHHhCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA---NPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~---~~~~~~~~~~~~~~~ 151 (257)
.+|...+..+++.+|++++|+|+++ +|+... ..++.. ++.+.++
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~- 154 (187)
T 2a9k_A 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK-NRAEQWN- 154 (187)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHH-HHHHHTT-
T ss_pred cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH-HHHHHcC-
Confidence 9999999999999999999999986 565332 122222 2222233
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 155 --~~~~~~Sa~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 155 --VNYVETSAKTRANVDKVFFDLMR 177 (187)
T ss_dssp --CEEEECCTTTCTTHHHHHHHHHH
T ss_pred --CeEEEeCCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
No 115
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.70 E-value=4.7e-18 Score=133.69 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=88.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+.... . ....|+......+.+.. ..+.+|||||+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~---------------~~~~t~~~~~~~~~~~~------~~~~~~Dt~G~ 76 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDV--V---------------TTVPTVGVNLETLQYKN------ISFEVWDLGGQ 76 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCC--E---------------EECSSTTCCEEEEEETT------EEEEEEEECCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCC--C---------------CcCCCCceEEEEEEECC------EEEEEEECCCC
Confidence 4567899999999999999999943211 0 00112222233344444 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHH-HhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQT-LFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~-~~~~~ 152 (257)
+++...+..+++.+|++++|+|+++ +|+.... .++..+.+.. .+...
T Consensus 77 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T 2x77_A 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNR 156 (189)
T ss_dssp SSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS
T ss_pred HhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCC
Confidence 9988777778899999999999986 6664432 2333332221 11222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~ 180 (189)
T 2x77_A 157 TWTIVKSSSKTGDGLVEGMDWLVE 180 (189)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEEccCCCccCHHHHHHHHHH
Confidence 347999999999999999988763
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.70 E-value=2.5e-17 Score=133.74 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=83.7
Q ss_pred CCCCCCC--CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEE
Q psy12244 19 PYEDIPI--ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYL 96 (257)
Q Consensus 19 ~~~~~~~--~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~ 96 (257)
.++.+|. .+.++|+++|.+|+|||||+++|++..... ....+.|.......+.+.. ..
T Consensus 18 ~~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~------~~ 77 (228)
T 2qu8_A 18 YFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDV--------------QSYSFTTKNLYVGHFDHKL------NK 77 (228)
T ss_dssp ----CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEE--------------ECC-----CEEEEEEEETT------EE
T ss_pred eeccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCcc--------------CCCCCcceeeeeeeeecCC------Ce
Confidence 4455565 567899999999999999999996532110 0112233333333333333 78
Q ss_pred EEEeCCCCC------ccc---HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC
Q psy12244 97 LNLIDTPGH------VDF---SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA 136 (257)
Q Consensus 97 ~~liDtpG~------~~~---~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~ 136 (257)
+.||||||+ +.. ...+...+..+|++|+|+|+++ +|+...
T Consensus 78 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 78 YQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp EEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred EEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 999999999 332 1223334677899999999975 566432
Q ss_pred C-H-HHHHHHHHHHhCCC--ccceEEecccccccccccccccCC
Q psy12244 137 N-P-EACEEQLQTLFNID--KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 137 ~-~-~~~~~~~~~~~~~~--~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. . ....+.++++.... ..+++++||++|.|+++++++|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (228)
T 2qu8_A 158 DSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201 (228)
T ss_dssp -CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHH
Confidence 1 1 12222233322211 257999999999999999988863
No 117
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.2e-17 Score=135.01 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=87.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.||||||+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM--------------DSKSTIGVEFATRTLEI----EGKRIKAQIWDTAGQ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CCSEEEEEEEE----TTEEEEEEEECCTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEE----CCEEEEEEEEECCCc
Confidence 567899999999999999999997643211 11122222222233333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... ..+....+.+..+
T Consensus 73 ~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--- 149 (223)
T 3cpj_B 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQ--- 149 (223)
T ss_dssp TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT---
T ss_pred cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC---
Confidence 9998888888999999999999987 5653211 1122223333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 150 ~~~~~~Sa~~~~gi~~l~~~l~~ 172 (223)
T 3cpj_B 150 LLFTETSALNSENVDKAFEELIN 172 (223)
T ss_dssp CEEEECCCC-CCCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 57999999999999999988864
No 118
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=126.63 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=89.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... . ...|....+.. .... ++....+.||||||+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~--------------~~~t~~~~~~~-~~~~--~~~~~~~~l~Dt~G~ 66 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--T--------------YIPTIEDTYRQ-VISC--DKSVCTLQITDTTGS 66 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC--T--------------TSCCCCEEEEE-EEEE--TTEEEEEEEEECCGG
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC--c--------------ccCccccceeE-EEEE--CCEEEEEEEEeCCCh
Confidence 356789999999999999999997632210 0 00111111111 1111 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC-HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN-PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~-~~~~~~~~~~~~~~~ 152 (257)
.+|...+..++..+|++++|+|+++ +|+.... .......+...++
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-- 144 (199)
T 2gf0_A 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-- 144 (199)
T ss_dssp GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT--
T ss_pred HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC--
Confidence 9999999999999999999999986 6664322 1222233333334
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 145 -~~~~~~Sa~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 145 -CAFMETSAKMNYNVKELFQELLT 167 (199)
T ss_dssp -CEEEECBTTTTBSHHHHHHHHHH
T ss_pred -CeEEEEecCCCCCHHHHHHHHHH
Confidence 36999999999999999988864
No 119
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=6.6e-18 Score=131.88 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=84.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+..... ....|+......+.+.+ ..+.+|||||+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~Dt~G~ 72 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-----------------TTKPTIGFNVETLSYKN------LKLNVWDLGGQ 72 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-----------------EECSSTTCCEEEEEETT------EEEEEEEEC--
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-----------------ccCCcCccceEEEEECC------EEEEEEECCCC
Confidence 56789999999999999999999532110 11122222233344443 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC---
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI--- 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~--- 151 (257)
.++...+...+..+|++++|+|+++ +|+.+... .+++.+.++.
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~ 149 (183)
T 1moz_A 73 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS---ASEVSKELNLVEL 149 (183)
T ss_dssp --CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC---HHHHHHHTTTTTC
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC---HHHHHHHhCcccc
Confidence 9988888888999999999999876 66644321 1223333321
Q ss_pred --CccceEEecccccccccccccccC
Q psy12244 152 --DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 --~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 150 ~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 150 KDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp CSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred cCCceEEEEccCCCCcCHHHHHHHHH
Confidence 234789999999999999998876
No 120
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.70 E-value=1.6e-16 Score=124.71 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=85.1
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+++|.+|+|||||+++|+...-... ...|.......+.+ ++..+.+.|||||
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~----------------~~~t~~~~~~~~~~----~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE----------------ESPEGGRFKKEIVV----DGQSYLLLIRDEG 75 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC----------------CCTTCEEEEEEEEE----TTEEEEEEEEECS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------------cCCCcceEEEEEEE----CCEEEEEEEEECC
Confidence 345678999999999999999999976332110 00111111122333 4455788999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC--C--HHHHHHHHHHH
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA--N--PEACEEQLQTL 148 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~--~--~~~~~~~~~~~ 148 (257)
|+++|. +++.+|++++|+|+++ +|+... . ..+..+++.+.
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~ 150 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD 150 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH
Confidence 999886 6788999999999987 666311 1 12223333333
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++ ..+++++||++|.|+++++++|..
T Consensus 151 ~~--~~~~~e~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 151 LK--RCTYYETCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp TT--TCEEEEEBTTTTBTHHHHHHHHHH
T ss_pred cC--CCeEEEecCCCCCCHHHHHHHHHH
Confidence 33 357999999999999999988763
No 121
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=1.3e-17 Score=134.68 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=89.0
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhc-CccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMT-GTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~-~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
......+|+++|.+|+|||||+++|+... .... ....|.+.... .+.+ ++....+.||||
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~-------------~~t~~~~~~~~--~~~~----~~~~~~~~i~Dt 71 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-------------VATLGVEVHPL--VFHT----NRGPIKFNVWDT 71 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEE-------------ETTTTEEEEEE--EEEE----TTEEEEEEEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------CCccceeEEEE--EEEE----CCEEEEEEEEeC
Confidence 34567899999999999999999965422 1100 01122333222 2222 344578999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
||++.|...+..+++.+|++++|+|+++ +|+.+.........+.+..+
T Consensus 72 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--- 148 (221)
T 3gj0_A 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--- 148 (221)
T ss_dssp CSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHT---
T ss_pred CChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcC---
Confidence 9999988888888999999999999987 66643321111112222223
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 149 ~~~~~~Sa~~~~gi~~l~~~l~~ 171 (221)
T 3gj0_A 149 LQYYDISAKSNYNFEKPFLWLAR 171 (221)
T ss_dssp CEEEECBGGGTBTTTHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 122
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=2.7e-17 Score=156.35 Aligned_cols=106 Identities=46% Similarity=0.772 Sum_probs=77.5
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeec----------ccCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTS----------ILDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~----------~~~~ 92 (257)
..+.++|+|+|++|+|||||+++|++..+.+... ....++|....|+++|+|+......+.|.. ..++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4578999999999999999999999987766543 334667888899999999988877777751 0133
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.++|||||||.+|...+..+++.+|++|+|+|+.+
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~ 133 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE 133 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC
Confidence 45899999999999999999999999999999999987
No 123
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.69 E-value=6.6e-17 Score=127.67 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=90.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+..... .. ....+.... ...+.+ ++..+.+.||||||+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~------------~~~t~~~~~-~~~~~~----~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP--TA------------YVPTVFENF-SHVMKY----KNEEFILHLWDTAGQ 81 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SS------------CCCCSEEEE-EEEEEE----TTEEEEEEEEEECCS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC--Cc------------cCCeeeeee-EEEEEE----CCEEEEEEEEECCCc
Confidence 46689999999999999999999764321 00 011111111 111222 445578899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC----CHHHHHHHHHHHhCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA----NPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~----~~~~~~~~~~~~~~~ 151 (257)
++|...+..+++.+|++++|+|+++ +|+... ...+..+++.+.++.
T Consensus 82 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence 9999888889999999999999987 677532 122333344444443
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. +++++||++|.|++++++.|..
T Consensus 162 ~--~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 162 V--AYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp S--CEEECBTTTTBSHHHHHHHHHH
T ss_pred C--EEEEeecCCCCCHHHHHHHHHH
Confidence 2 3899999999999999988864
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.69 E-value=5.3e-18 Score=141.65 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=89.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|++.... ....+|+|.+.....+.+.+ ..+.||||||+.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~--------------v~~~~g~t~~~~~~~~~~~~------~~~~liDtpG~~~ 62 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQR--------------VGNWAGVTVERKEGQFSTTD------HQVTLVDLPGTYS 62 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEE--------------EEECTTSSSEEEEEEEECSS------CEEEEEECCCCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcc--------------cCCCCCeeEEEEEEEEEeCC------CceEEEECcCCCc
Confidence 468999999999999999999764311 11235677776666666654 6789999999988
Q ss_pred cHH----------HHHHh--hhhcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhC
Q psy12244 108 FSN----------EVTRS--LAACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFN 150 (257)
Q Consensus 108 ~~~----------~~~~~--~~~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~ 150 (257)
+.. ....+ ...+|++++|+|++. +|+.+. ......+.+.+.++
T Consensus 63 ~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg 142 (274)
T 3i8s_A 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG 142 (274)
T ss_dssp SCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT
T ss_pred cccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC
Confidence 651 11222 368999999999987 343211 01112344555555
Q ss_pred CCccceEEecccccccccccccccCCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+|++++||++|.|++++++.|...
T Consensus 143 ---~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 143 ---CPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp ---SCEEECCCGGGHHHHHHHHHHHTC
T ss_pred ---CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999999988743
No 125
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=1.1e-17 Score=134.59 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=87.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|.+|+|||||+++|++.... .......... .....+.. ..+....+.||||||+
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~--~~~~~~~~-~~~~~~~~~l~Dt~G~ 71 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE--------------KNYNATVGAV--NHPVTFLD-DQGNVIKFNVWDTAGQ 71 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT--------------CEEETTTTEE--EEEEEEEB-TTSCEEEEEEEEECSG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCcccee--eEEEEEEe-CCCcEEEEEEEecCCc
Confidence 45679999999999999999999642210 0001111111 11222221 0233378999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+++...+...+..+|++|+|+|+++ +|+.... +...+...........+
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 150 (218)
T 4djt_A 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ-KISKKLVMEVLKGKNYE 150 (218)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCE
T ss_pred hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCCc
Confidence 9988778888899999999999987 6764321 11122333333344567
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|+++++++|..
T Consensus 151 ~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 151 YFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp EEEEBTTTTBTTTHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 999999999999999988864
No 126
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.2e-16 Score=126.46 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=85.9
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
|+.++..+..+|+++|.+|+|||||+++|+....... ......... ...+.+ ++....+.|
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--------------~~~t~~~~~-~~~~~~----~~~~~~~~l 80 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--------------YDPTLESTY-RHQATI----DDEVVSMEI 80 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--------------CCTTCCEEE-EEEEEE----TTEEEEEEE
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcc--------------cCCCCCceE-EEEEEE----CCEEEEEEE
Confidence 3444455678999999999999999999986432110 011111111 111222 344578999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHH
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQ 146 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~ 146 (257)
|||||+.+ ...+...++.+|++++|+|+++ +|+.... ..+....+.
T Consensus 81 ~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 159 (196)
T 2atv_A 81 LDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA 159 (196)
T ss_dssp EECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred EECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence 99999998 6677788899999999999987 5553311 112222333
Q ss_pred HHhCCCccceEEecccccc-cccccccccC
Q psy12244 147 TLFNIDKKSVLRIWHRRCF-SCADCHRSLD 175 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~-gi~~l~~~i~ 175 (257)
+.++ .+++++||++|. |+++++++|.
T Consensus 160 ~~~~---~~~~~~Sa~~g~~gi~~l~~~l~ 186 (196)
T 2atv_A 160 TELA---CAFYECSACTGEGNITEIFYELC 186 (196)
T ss_dssp HHHT---SEEEECCTTTCTTCHHHHHHHHH
T ss_pred HHhC---CeEEEECCCcCCcCHHHHHHHHH
Confidence 3333 469999999999 9999998876
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.68 E-value=7.2e-17 Score=129.22 Aligned_cols=130 Identities=16% Similarity=0.122 Sum_probs=86.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.+..+|+++|++|+|||||+++|+..... .. ...|+... ...+.+ ++..+.+.||||||
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~--------------~~~t~~~~~~~~~~~----~~~~~~~~i~Dt~G 66 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TD--------------YIPTVFDNFSANVAV----DGQIVNLGLWDTAG 66 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--SS--------------CCCSSCCCEEEEEEC----SSCEEEEEEECCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--cc--------------CCCccceeEEEEEEE----CCEEEEEEEEECCC
Confidence 46688999999999999999999763211 00 00111111 111222 44557899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH----------HHHHHH
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP----------EACEEQ 144 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~----------~~~~~~ 144 (257)
+++|...+..+++.+|++|+|+|+++ +|+..... .+..++
T Consensus 67 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 67 QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE 146 (212)
T ss_dssp CCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH
T ss_pred cHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHH
Confidence 99998888889999999999999987 34322110 111223
Q ss_pred HHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+.+.++. .+++++||++|.|+++++++|...
T Consensus 147 ~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 147 LRKQIGA--AAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp HHHHHTC--SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHcCC--ceEEEccCCCCCCHHHHHHHHHHH
Confidence 3333342 369999999999999999988743
No 128
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.68 E-value=1.7e-17 Score=140.39 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=85.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+|+|++|+|||||+|+|++....+... ..+.|.......+.+.. .+++||||||+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-------------~~~tTr~~~~gi~~~~~------~~i~~iDTpG~ 66 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSR-------------KAQTTRHRIVGIHTEGA------YQAIYVDTPGL 66 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCC-------------CSSCCSSCEEEEEEETT------EEEEEESSSSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCC-------------CCCcceeeEEEEEEECC------eeEEEEECcCC
Confidence 355689999999999999999998754332211 12233322223333333 78999999999
Q ss_pred c-ccH--------HHHHHhhhhcceEEEEEecCc-------------------------cCCCCCCHHHHHHHHHHHhC-
Q psy12244 106 V-DFS--------NEVTRSLAACQGVVLLIDANQ-------------------------VDLKNANPEACEEQLQTLFN- 150 (257)
Q Consensus 106 ~-~~~--------~~~~~~~~~aD~~ilVvd~~~-------------------------~D~~~~~~~~~~~~~~~~~~- 150 (257)
. ... .....++..+|++++|+|+.. +|+.. +.....+.+.++..
T Consensus 67 ~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 67 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQ 145 (301)
T ss_dssp CHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHHHHh
Confidence 8 322 223446678999999999865 67654 12333333333222
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|++++++.+..
T Consensus 146 ~~~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 146 MNFLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp SCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred cCcCceEEEECCCCCCHHHHHHHHHH
Confidence 12236899999999999999888764
No 129
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.68 E-value=9.7e-18 Score=138.85 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=89.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+|+|++.... ....+|+|.+.....+.+.+ ..+.||||||+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~--------------~~~~pg~tv~~~~~~~~~~~------~~~~l~DtpG~ 62 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY--------------VANWPGVTVEKKEGVFTYKG------YTINLIDLPGT 62 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE--------------EEECTTSCCEEEEEEEEETT------EEEEEEECCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc--------------ccCCCCceEEEEEEEEEECC------eEEEEEECCCc
Confidence 35678999999999999999999753211 11234677766666665544 78999999999
Q ss_pred cccHH------HHHHhh--hhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhCCC
Q psy12244 106 VDFSN------EVTRSL--AACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~------~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~~~ 152 (257)
.++.. ....++ ..+|++++|+|++. +|+.... .....+.+.+.++
T Consensus 63 ~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-- 140 (258)
T 3a1s_A 63 YSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-- 140 (258)
T ss_dssp SSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--
T ss_pred CccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcC--
Confidence 87643 123333 47999999999987 3331100 0011344555555
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|++++||++|.|++++++.+..
T Consensus 141 -~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 141 -IPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp -SCEEECCTTTCTTHHHHHHHHHH
T ss_pred -CCEEEEEeeCCcCHHHHHHHHHH
Confidence 46999999999999999998874
No 130
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.68 E-value=1.4e-18 Score=138.05 Aligned_cols=130 Identities=16% Similarity=0.245 Sum_probs=84.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+... +......+.+.+.....+.+ ++..+.+.||||||+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT--------------YTESYISTIGVDFKIRTIEL----DGKTIKLQIWDTAGQ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC--------------CCCHHHHHHCCSEEEEEEEE----TTEEEEEEEECCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC--------------CCCCcCCcccceEEEEEEEE----CCEEEEEEEEECCCc
Confidence 457899999999999999999985321 11222333444433444444 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... .....+.+.+.++
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--- 169 (199)
T 3l0i_B 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG--- 169 (199)
T ss_dssp TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT---
T ss_pred HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC---
Confidence 9988877888899999999999987 5653321 0111223333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 170 ~~~~~vSA~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 170 IPFLETSAKNATNVEQSFMTMAA 192 (199)
T ss_dssp CCBCCCCC---HHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998874
No 131
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.68 E-value=5.9e-17 Score=134.11 Aligned_cols=135 Identities=10% Similarity=0.060 Sum_probs=87.6
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+|+|++|+|||||+|+|++........ ...++|.......+.+.+ ..+.|||||
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~------------~~~~~t~~~~~~~~~~~~------~~i~iiDTp 79 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKL------------GSQTLTKTCSKSQGSWGN------REIVIIDTP 79 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT------------TSCCCCCSCEEEEEEETT------EEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC------------CCCceeeeeEEEEEEeCC------CEEEEEECc
Confidence 34467899999999999999999998754332211 011145554445555655 789999999
Q ss_pred CCccc-----------HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHH
Q psy12244 104 GHVDF-----------SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEAC 141 (257)
Q Consensus 104 G~~~~-----------~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~ 141 (257)
|+.++ ......+++.+|++|+|+|+.. +|+.+.+....
T Consensus 80 G~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~ 159 (260)
T 2xtp_A 80 DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDY 159 (260)
T ss_dssp GGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHH
Confidence 99764 2233346788999999999975 56654433332
Q ss_pred H--------HHHHHHhCCCccce--EEecccccccccccccccCC
Q psy12244 142 E--------EQLQTLFNIDKKSV--LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~--------~~~~~~~~~~~~~~--i~iSa~~g~gi~~l~~~i~~ 176 (257)
. ..+.+.++....++ +++||++|.|++++++.|..
T Consensus 160 i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~ 204 (260)
T 2xtp_A 160 MHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIED 204 (260)
T ss_dssp HHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHH
Confidence 1 11223333211112 89999999999999988864
No 132
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.67 E-value=3.7e-17 Score=127.02 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=82.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++....... ...+.|.+.....+.+.+ ..+.+|||||+.+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-------------~~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVT-------------DIAGTTRDVLREHIHIDG------MPLHIIDTAGLRE 64 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-------------SSTTCCCSCEEEEEEETT------EEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceee-------------CCCCceeceeeEEEEECC------eEEEEEECCCccc
Confidence 457999999999999999999764322111 123445554445555544 5689999999975
Q ss_pred cH--------HHHHHhhhhcceEEEEEecCccCCCCCCHHHHHHHHHHHh-----------------------CCCccce
Q psy12244 108 FS--------NEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQTLF-----------------------NIDKKSV 156 (257)
Q Consensus 108 ~~--------~~~~~~~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 156 (257)
+. ......++.+|++++|+|+++-.. .......+.+.+.. .....++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s--~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~ 142 (172)
T 2gj8_A 65 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA--VDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHAL 142 (172)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC--CSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEE
T ss_pred chhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCce
Confidence 31 112345789999999999986221 11122222222211 0112368
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++||++|.|++++++.|..
T Consensus 143 ~~~SA~~g~gv~~l~~~l~~ 162 (172)
T 2gj8_A 143 IRLSARTGEGVDVLRNHLKQ 162 (172)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988863
No 133
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.67 E-value=1.2e-16 Score=127.05 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=87.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|.+|+|||||+++|++...... ..+.++.... ..+.+ ++....+.||||||+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~-~~~~~----~~~~~~l~i~Dt~G~ 83 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV--------------YVPTVFENYI-ADIEV----DGKQVELALWDTAGQ 83 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSS--------------CCCSSCCCCE-EEEEE----TTEEEEEEEECCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcc--------------cCCcccceEE-EEEEE----CCEEEEEEEEECCCc
Confidence 3567899999999999999999976432110 0111111111 11222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~ 141 (257)
++|...+..+++.+|++++|+|+++ +|+..... .+.
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 84 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHH
T ss_pred hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHH
Confidence 9998888888999999999999987 66644210 011
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+.+.++ ..+++++||++|.|++++++.|.
T Consensus 164 ~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~ 195 (201)
T 2gco_A 164 GRDMANRIS--AFGYLECSAKTKEGVREVFEMAT 195 (201)
T ss_dssp HHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHhCC--CcEEEEeeCCCCCCHHHHHHHHH
Confidence 112222222 23689999999999999998775
No 134
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.67 E-value=8.5e-17 Score=128.35 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=85.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+...... . ....+.+.....+.+ ++..+.+.||||||+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~-------------~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--E-------------YIPTVFDNYSANVMV----DGKPVNLGLWDTAGL 88 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC----------------CCCCSEEEEEEEEEC----C-CEEEEEEEEECCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCC--C-------------cCCeecceeEEEEEE----CCEEEEEEEEECCCc
Confidence 456799999999999999999997632210 0 011111111222222 445578889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~ 141 (257)
++|...+..+++.+|++++|+|+++ +|+..... ...
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHH
Confidence 9998888889999999999999987 34422110 001
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+.+.+ ...+++++||++|.|+++++++|.
T Consensus 169 ~~~~~~~~--~~~~~~~~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 169 GLAMAKEI--GAVKYLECSALTQRGLKTVFDEAI 200 (204)
T ss_dssp HHHHHHHT--TCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHhc--CCcEEEEeeCCCCCCHHHHHHHHH
Confidence 11122222 234699999999999999998775
No 135
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.67 E-value=1.3e-17 Score=132.71 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=63.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCc--cEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGE--EYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~--~~~~~liDtp 103 (257)
.+..+|+++|++|+|||||+++|++...... .+....+..+.....+.+. +. ...+.|||||
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------~~~~~t~~~~~~~~~~~~~----~~~~~~~~~l~Dt~ 81 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL------------KDYAMTSGVEVVVAPVTIP----DTTVSVELFLLDTA 81 (208)
T ss_dssp EEEEEEEEC----------------------------------------------CEEEECT----TSSEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCccc------------CCCCCccceEEEEEEEEEC----CcccEEEEEEEECC
Confidence 4567999999999999999999976411110 0111112222333334443 33 5789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCC-CC--HHHHHHHHHH
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKN-AN--PEACEEQLQT 147 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~-~~--~~~~~~~~~~ 147 (257)
|+++|...+..+++.+|++|+|+|+++ +|+.. .. ..+..+++.+
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~ 161 (208)
T 2yc2_C 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT 161 (208)
T ss_dssp TTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH
Confidence 999999888889999999999999987 34432 11 0112222333
Q ss_pred HhCCCccceEEecccc-cccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRR-CFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~-g~gi~~l~~~i~~ 176 (257)
.++ .+++++||++ |.|+++++++|..
T Consensus 162 ~~~---~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 162 TNT---LDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp HTT---CEEEECCC-------CHHHHHHHH
T ss_pred HcC---CEEEEeccCCCCcCHHHHHHHHHH
Confidence 333 5799999999 9999999988863
No 136
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.67 E-value=4.3e-18 Score=155.77 Aligned_cols=181 Identities=21% Similarity=0.193 Sum_probs=107.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc------------cCCcc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI------------LDGEE 94 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~------------~~~~~ 94 (257)
+.++|+++|++|+|||||+++|++...... ..+++|.......+.+... .+...
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~--------------e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~ 69 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR--------------EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETL 69 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc--------------cCCceecccCeEEEeechhhhhcccccccccccccc
Confidence 567899999999999999999986432110 0124444444333332200 00011
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC-C----------
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA-N---------- 137 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~-~---------- 137 (257)
..++|||||||++|...+..+++.+|++|+|+|+++ +|+... .
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHH
Confidence 369999999999999888888999999999999987 787531 1
Q ss_pred ----HHHHH-------HHHHHHh---CC------------CccceEEecccccccccccccccCCCcccCCCCCC-CCCC
Q psy12244 138 ----PEACE-------EQLQTLF---NI------------DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKP-DSKA 190 (257)
Q Consensus 138 ----~~~~~-------~~~~~~~---~~------------~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~-~~~~ 190 (257)
.+... .++.+.+ ++ ...|++++||++|.|+++|+++|..... ..+... ....
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~-~~~~~~l~~~~ 228 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ-QYLREQLKIEE 228 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH-HHCSGGGEECT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc-ccchhhhcccc
Confidence 01111 1111111 22 2347999999999999999988864211 000000 0001
Q ss_pred CCCCCcc-----hhhhcceeeEeeecccchhhHHHHH
Q psy12244 191 TPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLL 222 (257)
Q Consensus 191 ~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~ 222 (257)
..+.... ..+.++....+.+.+|....++.+.
T Consensus 229 ~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~ 265 (594)
T 1g7s_A 229 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIA 265 (594)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEE
T ss_pred CCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEE
Confidence 1111111 2233556667778888777776654
No 137
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.67 E-value=2.6e-17 Score=128.28 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=80.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+..... . ...+.+.... ...+.+ ++....+.+|||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~--~------------~~~~t~~~~~-~~~~~~----~~~~~~~~i~Dt~G~ 66 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--T------------DYVPTVFDNF-SANVVV----NGATVNLGLWDTAGQ 66 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------C-BCCCC-----------CEEECCCC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--C------------CCCCeeeeeE-EEEEEE----CCEEEEEEEEECCCC
Confidence 45678999999999999999999763211 0 0001000000 001111 334467889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH------------HHHHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP------------EACEE 143 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~------------~~~~~ 143 (257)
++|...+..+++.+|++++|+|+++ +|+.+... .+...
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 9998888888999999999999986 44422111 11112
Q ss_pred HHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++.+.++. .+++++||++|.|++++++.|.+
T Consensus 147 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 147 ELKKLIGA--PAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp HHHHHHTC--SEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCC--CEEEEEECCCCCCHHHHHHHHHH
Confidence 33333332 36999999999999999988763
No 138
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=1.5e-16 Score=124.18 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=85.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++.... ... ... +.......+.+ ++....+.+|||||++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~------------~~t-~~~~~~~~~~~----~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEY------------IPT-VFDNYSANVMV----DGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSC------------CCC-SCCEEEEEEEE----TTEEEEEEEECCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCc------------CCc-ccceeEEEEEE----CCEEEEEEEEECCCCH
Confidence 4578999999999999999999763211 100 000 00111111222 3455788999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EACE 142 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~~ 142 (257)
+|...+..+++.+|++++|+|+++ +|+..... .+..
T Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 144 (186)
T 1mh1_A 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 144 (186)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHH
Confidence 998888888999999999999987 34322110 0011
Q ss_pred HHHHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
..+.+.++ ..+++++||++|.|++++++.|...
T Consensus 145 ~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 145 LAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp HHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhcC--CcEEEEecCCCccCHHHHHHHHHHH
Confidence 12222222 2379999999999999999888743
No 139
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=3.2e-17 Score=128.58 Aligned_cols=127 Identities=17% Similarity=0.277 Sum_probs=86.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+.++|+++|++|+|||||+++|++.... .+..+++|.+.....+.+.+ ..+.+|||||+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVY--------------IGNWPGVTVEKKEGEFEYNG------EKFKVVDLPGVY 65 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEE--------------EEECTTSCCEEEEEEEEETT------EEEEEEECCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--------------ccCCCCeeccceEEEEEeCC------cEEEEEECCCcC
Confidence 4578999999999999999999753211 11223555555555555544 789999999998
Q ss_pred ccH------HHHHHhhh--hcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhCCCc
Q psy12244 107 DFS------NEVTRSLA--ACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~------~~~~~~~~--~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~~~~ 153 (257)
+|. ......+. .+|++++|+|+.. +|+... ......+++.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 142 (188)
T 2wjg_A 66 SLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG--- 142 (188)
T ss_dssp CCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhC---
Confidence 873 22334443 4899999999986 232110 00011234444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.+..
T Consensus 143 ~~~~~~Sa~~~~~v~~l~~~i~~ 165 (188)
T 2wjg_A 143 VKVVPLSAAKKMGIEELKKAISI 165 (188)
T ss_dssp SCEEECBGGGTBSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCHHHHHHHHHH
Confidence 46999999999999999988874
No 140
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.66 E-value=8.8e-17 Score=143.68 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=74.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+|+|++....+ .....+.|.+.....+.+.+ +.+.||||||+.++
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~-------------vs~~~gtT~d~~~~~i~~~g------~~l~liDT~G~~~~ 294 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAI-------------VSHMPGTTRDYIEECFIHDK------TMFRLTDTAGLREA 294 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------------------CEEEEETT------EEEEEEC-------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc-------------cCCCCCceEEEEEEEEEECC------eEEEEEECCCCCcc
Confidence 569999999999999999997643222 22345677776666677766 78999999999876
Q ss_pred HHH--------HHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHhCCC
Q psy12244 109 SNE--------VTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 109 ~~~--------~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
... +...+..+|++++|+|++. +|+....... .+++.+. +
T Consensus 295 ~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~-~~~l~~~-~-- 370 (476)
T 3gee_A 295 GEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADAL-IRAIADG-T-- 370 (476)
T ss_dssp -------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHH-HHHHHHH-H--
T ss_pred hhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchh-HHHHHhc-C--
Confidence 533 2346788999999999985 6665443222 1233332 1
Q ss_pred ccceEEecccccccccccccccCCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
..+++++||++|.|+++++++|...
T Consensus 371 ~~~~i~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 371 GTEVIGISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred CCceEEEEECCCCCHHHHHHHHHHH
Confidence 1469999999999999999998853
No 141
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=127.93 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=72.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+..... ......+. ......+.+ ++....+.||||||+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--------------~~~~~t~~-~~~~~~~~~----~~~~~~l~l~Dt~G~ 92 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP--------------ESYTPTVF-ERYMVNLQV----KGKPVHLHIWDTAGQ 92 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------------------CCCCC-EEEEEEEEE----TTEEEEEEEEEC---
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC--------------CCCCCccc-eeEEEEEEE----CCEEEEEEEEECCCc
Confidence 35679999999999999999999742210 01111111 111112222 445578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH-H-------------HH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP-E-------------AC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~-~-------------~~ 141 (257)
++|...+..++..+|++++|+|+++ +|+..... . +.
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp ------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHH
T ss_pred hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHH
Confidence 9999888889999999999999987 56543211 0 11
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..++.+.++ ..+++++||++|.|++++++.|..
T Consensus 173 ~~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 173 GQEMARSVG--AVAYLECSARLHDNVHAVFQEAAE 205 (214)
T ss_dssp HHHHHHHTT--CSEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHH
Confidence 122233333 237999999999999999988764
No 142
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=1.3e-16 Score=128.27 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=88.1
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+++|.+|+|||||+++|+...... .....+.... ...+.+ ++..+.+.|||||
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~----~~~~~~l~i~Dt~ 83 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPE--------------TYVPTVFENY-TACLET----EEQRVELSLWDTS 83 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEEC------CEEEEEEEEEC
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CcCCeeeeeE-EEEEEE----CCEEEEEEEEECC
Confidence 33456789999999999999999997633211 0011111111 111111 4455789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC--------------CHH
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA--------------NPE 139 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~--------------~~~ 139 (257)
|+++|...+..+++.+|++|+|+|+++ +|+.+. -..
T Consensus 84 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 163 (214)
T 3q3j_B 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISY 163 (214)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCH
T ss_pred CCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCH
Confidence 999998888889999999999999987 666431 112
Q ss_pred HHHHHHHHHhCCCccceEEeccccccc-ccccccccCCC
Q psy12244 140 ACEEQLQTLFNIDKKSVLRIWHRRCFS-CADCHRSLDST 177 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~~~ 177 (257)
+...++.+.++. .+++++||++|.| ++++++.|...
T Consensus 164 ~~~~~~~~~~~~--~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 164 EQGCAIAKQLGA--EIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHHHHHHHHTC--SEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEEeccCCCcccHHHHHHHHHHH
Confidence 222333333442 2699999999998 99999988743
No 143
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.66 E-value=1.1e-16 Score=144.41 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=91.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|++..... ...|+......+.+.+ +.+.||||||+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-----------------~~~T~~~~~~~~~~~~------~~~~l~Dt~G~ 376 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-----------------TIPTVGFNVETVTYKN------VKFNVWDVGGQ 376 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-----------------CCCCSSEEEEEEESSS------CEEEEEEECCC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-----------------cCCccceeEEEEEeCC------EEEEEEECCCc
Confidence 346789999999999999999997643110 1124444444455544 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHh-CCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLF-NID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~-~~~ 152 (257)
++|...+..+++.+|++|+|+|+++ +|+.+.. .++..+.+.... ...
T Consensus 377 ~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 456 (497)
T 3lvq_E 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 456 (497)
T ss_dssp GGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSS
T ss_pred HHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcC
Confidence 9999888889999999999999986 6664432 222222221111 122
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.||++++++|..
T Consensus 457 ~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 457 NWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998873
No 144
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.66 E-value=7.3e-17 Score=127.81 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=83.8
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
...+..+..+|+++|..|+|||||++++.+.... ....+...........+. ++....+.||
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~~~l~i~ 74 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP---------------NETLFLESTNKIYKDDIS---NSSFVNFQIW 74 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCG---------------GGGGGCCCCCSCEEEEEC---CTTSCCEEEE
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCC---------------cceeeeccccceeeeecc---CCCeeEEEEE
Confidence 4455667889999999999999999987542111 011111111111222221 2344789999
Q ss_pred CCCCCcccHHHH---HHhhhhcceEEEEEecCc-------------------------------cCCCCCC-----HHHH
Q psy12244 101 DTPGHVDFSNEV---TRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-----PEAC 141 (257)
Q Consensus 101 DtpG~~~~~~~~---~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-----~~~~ 141 (257)
||||+++|.... ..+++.+|++|+|+|+++ +|+...+ ...+
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v 154 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDI 154 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHH
Confidence 999999987776 788999999999999987 5654321 1111
Q ss_pred H----HHHHHHh-CCCccceEEecccccccccccccccC
Q psy12244 142 E----EQLQTLF-NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 142 ~----~~~~~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
. +++.+.. .....+++++||++ .|++++++.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~ 192 (196)
T 3llu_A 155 HQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVV 192 (196)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHH
Confidence 1 1122211 02345799999999 99999987764
No 145
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.66 E-value=6e-17 Score=135.05 Aligned_cols=126 Identities=14% Similarity=0.257 Sum_probs=89.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.++|+++|++|+|||||+|+|++.... ....+++|.+.....+.+.+ ..+.+|||||+.+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~--------------~~~~~~~t~~~~~~~~~~~~------~~~~l~DtpG~~~ 62 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQH--------------VGNWPGVTVEKKEGIMEYRE------KEFLVVDLPGIYS 62 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEE--------------EEECTTSSCEEEEEEEEETT------EEEEEEECCCCSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcc--------------cCCCCCeEEEeeEEEEEECC------ceEEEEeCCCccc
Confidence 578999999999999999999763221 11245667776666676665 6799999999988
Q ss_pred cHH------HHHHhh--hhcceEEEEEecCc-------------------------cCCCCC-CHHHHHHHHHHHhCCCc
Q psy12244 108 FSN------EVTRSL--AACQGVVLLIDANQ-------------------------VDLKNA-NPEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~------~~~~~~--~~aD~~ilVvd~~~-------------------------~D~~~~-~~~~~~~~~~~~~~~~~ 153 (257)
|.. ....++ ..+|++++|+|++. +|+.+. ......+.+++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--- 139 (271)
T 3k53_A 63 LTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--- 139 (271)
T ss_dssp CCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS---
T ss_pred cccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcC---
Confidence 654 233333 57999999999987 222100 00001345555565
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|++++||++|.|++++++.+..
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~i~~ 162 (271)
T 3k53_A 140 VPVIPTNAKKGEGVEELKRMIAL 162 (271)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999988874
No 146
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.8e-16 Score=126.59 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=85.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+++|++..... ...+.++... ...+.+ ++....+.||||||++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~----~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE--------------VYVPTVFENY-VADIEV----DGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEE-EEEEEE----TTEEEEEEEEECTTCT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC--------------cCCCcccceE-EEEEEE----CCEEEEEEEEECCCcH
Confidence 45789999999999999999997633210 0111111111 111222 3455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC-HH-------------HHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN-PE-------------ACE 142 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~-~~-------------~~~ 142 (257)
+|...+..++..+|++++|+|+++ +|+.... .. +..
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 85 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp TCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHH
Confidence 998888888999999999999987 5553321 00 001
Q ss_pred HHHHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
..+...++ ..+++++||++|.|+++++++|...
T Consensus 165 ~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 165 RAMAVRIQ--AYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhcC--CCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 11112222 2268999999999999999988743
No 147
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.66 E-value=3.5e-17 Score=129.89 Aligned_cols=131 Identities=16% Similarity=0.104 Sum_probs=85.4
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|+.... . ..... .+.+.....+.+ ++..+.+.||||||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~------------~~~~~-t~~~~~~~~~~~----~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGY--P------------TEYIP-TAFDNFSAVVSV----DGRPVRLQLCDTAG 77 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------C-CSSEEEEEEEEE----TTEEEEEEEEECCC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC--C------------CCCCC-cccceeEEEEEE----CCEEEEEEEEECCC
Confidence 35677899999999999999999975321 0 01111 111111112222 34557889999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--------------HHH
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------------PEA 140 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------------~~~ 140 (257)
+++|...+..++..+|++++|+|+++ +|+.... ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 157 (201)
T 2q3h_A 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEE 157 (201)
T ss_dssp STTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred CHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHH
Confidence 99988877788899999999999987 5653310 111
Q ss_pred HHHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 141 CEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+...++ ..+++++||++|.|+++++++|..
T Consensus 158 ~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~ 191 (201)
T 2q3h_A 158 AAKLLAEEIK--AASYIECSALTQKNLKEVFDAAIV 191 (201)
T ss_dssp HHHHHHHHHT--CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhcC--CcEEEEEecCCCCCHHHHHHHHHH
Confidence 2223333333 236999999999999999988763
No 148
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.65 E-value=1.8e-17 Score=138.13 Aligned_cols=125 Identities=15% Similarity=0.238 Sum_probs=83.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|++..... ...+|.|.+.....+.+ ...+.+|||||+.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v--------------~~~pg~tv~~~~~~~~~-------~~~l~l~DtpG~~~ 61 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV--------------GNWPGVTVERKSGLVKK-------NKDLEIQDLPGIYS 61 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC--------------CSSSCCCCSCEEEECTT-------CTTEEEEECCCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc--------------cCCCCCcEEEEEEEEec-------CCeEEEEECCCcCc
Confidence 4689999999999999999997532111 11235565543333322 25789999999988
Q ss_pred cH------HHHHHhhh--hcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhCCCcc
Q psy12244 108 FS------NEVTRSLA--ACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~------~~~~~~~~--~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~~~~~ 154 (257)
|. .....++. .+|++++|+|++. +|+... ......+.+.+.++ +
T Consensus 62 ~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---~ 138 (272)
T 3b1v_A 62 MSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLG---V 138 (272)
T ss_dssp SSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT---S
T ss_pred cCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC---C
Confidence 75 23344444 5999999999987 333110 00011234455555 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
|++++||++|.|++++++.|..
T Consensus 139 ~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 139 PVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp CEEECBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEccCCCCHHHHHHHHHH
Confidence 6999999999999999998864
No 149
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.65 E-value=2.5e-16 Score=125.85 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCc
Q psy12244 14 DSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGE 93 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~ 93 (257)
+.....|+.. .....+|+++|.+|+|||||+++|++..... .....+.... ...+.+ ++.
T Consensus 15 ~~~~~~m~~~-~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~----~~~ 74 (205)
T 1gwn_A 15 VPRGSHMDPN-QNVKCKIVVVGDSQCGKTALLHVFAKDCFPE--------------NYVPTVFENY-TASFEI----DTQ 74 (205)
T ss_dssp -------------CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEES----SSS
T ss_pred cCCCCCCCcc-cceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCccceeE-EEEEEE----CCE
Confidence 3344455543 3456789999999999999999997632210 0011111111 111222 445
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC------
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN------ 137 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~------ 137 (257)
...+.||||||+++|...+..+++.+|++|+|+|+++ +|+....
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~ 154 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVEL 154 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHH
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhh
Confidence 6889999999999998877888899999999999986 5654210
Q ss_pred --------HHHHHHHHHHHhCCCccceEEeccc-ccccccccccccCC
Q psy12244 138 --------PEACEEQLQTLFNIDKKSVLRIWHR-RCFSCADCHRSLDS 176 (257)
Q Consensus 138 --------~~~~~~~~~~~~~~~~~~~i~iSa~-~g~gi~~l~~~i~~ 176 (257)
..+..+++.+.++ ..+++++||+ +|.|++++++.|.+
T Consensus 155 ~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 155 SNHRQTPVSYDQGANMAKQIG--AATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp HTTTCCCCCHHHHHHHHHHHT--CSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHcC--CCEEEEeeeccCCcCHHHHHHHHHH
Confidence 0111223333333 2469999999 69999999987763
No 150
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.65 E-value=3e-16 Score=122.88 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=86.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|++..... ...+.+.... ...+.+ ++....+.||||||+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~----~~~~~~~~i~Dt~G~ 65 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--------------NYVPTVFENY-TASFEI----DTQRIELSLWDTSGS 65 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEEC----SSCEEEEEEEEECCS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeE-EEEEEE----CCEEEEEEEEECCCC
Confidence 456789999999999999999997632210 0011111111 111222 445578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--------------HHHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------------PEAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------------~~~~ 141 (257)
++|...+...++.+|++++|+|+++ +|+.... ..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHH
Confidence 9998877888899999999999986 5654210 0111
Q ss_pred HHHHHHHhCCCccceEEeccc-ccccccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHR-RCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~-~g~gi~~l~~~i~~ 176 (257)
.+++.+.++ ..+++++||+ +|.|++++++.+.+
T Consensus 146 ~~~~~~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 146 GANMAKQIG--AATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp HHHHHHHHT--CSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CcEEEEeeecCCCcCHHHHHHHHHH
Confidence 222333333 3479999999 69999999987764
No 151
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.46 E-value=1e-17 Score=133.43 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=85.3
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
...+..+|+++|.+|+|||||+++|+...-. . + ....+.+.....+.+ ++....+.|||||
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~------------~-~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~ 86 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFP--G------------E-YIPTVFDNYSANVMV----DGKPVNLGLWDTA 86 (204)
Confidence 3456789999999999999999999642210 0 0 000111111111111 3344678899999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH-----------HHHH
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP-----------EACE 142 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~-----------~~~~ 142 (257)
|+++|...+..+++.+|++++|+|+++ +|+..... ....
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~ 166 (204)
T 3th5_A 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166 (204)
Confidence 999999888889999999999999876 33322110 0000
Q ss_pred HHHHHHhCCCcc-ceEEecccccccccccccccCC
Q psy12244 143 EQLQTLFNIDKK-SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 143 ~~~~~~~~~~~~-~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++..++...... +++++||++|.|++++++.|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 111111111122 6899999999999999998863
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.64 E-value=4e-16 Score=138.66 Aligned_cols=131 Identities=19% Similarity=0.210 Sum_probs=87.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+|+|++....+.. ...|.|.+.....+.+.+ ..+.+|||||+
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-------------~~~gtT~d~~~~~i~~~g------~~~~l~Dt~G~ 238 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVS-------------PIPGTTRDPVDDEVFIDG------RKYVFVDTAGL 238 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-------------CCC------CCEEEEETT------EEEEESSCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccC-------------CCCCCcCCceEEEEEECC------EEEEEEECCCC
Confidence 34678999999999999999999865432221 134566666666677765 67899999998
Q ss_pred cccHHH------------HHHhhhhcceEEEEEecCc--------------------------cCCCCCC---HHHHHHH
Q psy12244 106 VDFSNE------------VTRSLAACQGVVLLIDANQ--------------------------VDLKNAN---PEACEEQ 144 (257)
Q Consensus 106 ~~~~~~------------~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~---~~~~~~~ 144 (257)
.++... ....+..+|++++|+|+.. +|+.+.+ .++..+.
T Consensus 239 ~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~ 318 (439)
T 1mky_A 239 RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKL 318 (439)
T ss_dssp -----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHH
Confidence 543321 2456788999999999875 6765432 3344445
Q ss_pred HHHHh-CCCccceEEecccccccccccccccC
Q psy12244 145 LQTLF-NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.+.+ .....+++++||++|.|++++++.+.
T Consensus 319 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 319 FREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp HHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 54444 23446899999999999999998875
No 153
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.64 E-value=1.2e-16 Score=142.89 Aligned_cols=125 Identities=19% Similarity=0.303 Sum_probs=92.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc-c
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV-D 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-~ 107 (257)
.+|+++|.+|+|||||+|+|++....+... ..+.|.+.....+.+.+ ..+.||||||+. +
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-------------~~gTT~d~~~~~i~~~g------~~~~l~DTaG~~~~ 304 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-------------IPGTTRDVISEEIVIRG------ILFRIVDTAGVRSE 304 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCC-------------SSCCSSCSCCEEEEETT------EEEEEEESSCCCSS
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCC-------------CCCeeeeeEEEEEecCC------eEEEEEECCCcccc
Confidence 689999999999999999998864332221 34567676666677665 789999999998 5
Q ss_pred cH--------HHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 108 FS--------NEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~--------~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+. ..+...+..+|++|+|+|+++ +|+..... .+++.+.++. ..+
T Consensus 305 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~---~~~~~~~~~~-~~~ 380 (482)
T 1xzp_A 305 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKIN---EEEIKNKLGT-DRH 380 (482)
T ss_dssp CCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCC---HHHHHHHHTC-STT
T ss_pred chhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccC---HHHHHHHhcC-CCc
Confidence 42 345678899999999999875 77754311 1233333332 257
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|+++|+++|..
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998874
No 154
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.64 E-value=1.1e-15 Score=118.76 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=81.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|++..... . .+.+... ....+.+ ++....+.+|||||+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~-------------~~t~~~~-~~~~~~~----~~~~~~l~i~Dt~G~ 64 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--L-------------EKTESEQ-YKKEMLV----DGQTHLVLIREEAGA 64 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--C-------------SSCSSSE-EEEEEEE----TTEEEEEEEEECSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--c-------------CCCccee-EEEEEEE----CCEEEEEEEEECCCC
Confidence 356789999999999999999997643211 0 0111101 1112222 345578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCC--C---CHHHHHHHHHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKN--A---NPEACEEQLQT 147 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~--~---~~~~~~~~~~~ 147 (257)
++ ..+++.+|++++|+|+++ +|+.. . ..++. +++..
T Consensus 65 ~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~~~ 138 (178)
T 2iwr_A 65 PD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALXA 138 (178)
T ss_dssp CC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH-HHHHH
T ss_pred ch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH-HHHHH
Confidence 87 346788999999999987 66621 1 12222 22333
Q ss_pred HhCCCccceEEecccccccccccccccC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+ ...+++++||++|.|++++++.|.
T Consensus 139 ~~--~~~~~~~~Sa~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 139 DM--KRCSYYETXATYGLNVDRVFQEVA 164 (178)
T ss_dssp HH--SSEEEEEEBTTTTBTHHHHHHHHH
T ss_pred hh--cCCeEEEEeccccCCHHHHHHHHH
Confidence 22 235799999999999999998876
No 155
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=122.91 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=81.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|.+|+|||||+++|++.... .. ....+.... ...+.+ ++....+.||||||
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~------------~~~t~~~~~-~~~~~~----~~~~~~l~i~Dt~G 78 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFI--SE------------YDPNLEDTY-SSEETV----DHQPVHLRVMDTAD 78 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC--SC------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECCC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCC--cc------------cCCCcccee-eEEEEE----CCEEEEEEEEECCC
Confidence 356789999999999999999999864311 00 001111111 111222 44557899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCC--HHHHHHHHHHHh
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNAN--PEACEEQLQTLF 149 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~--~~~~~~~~~~~~ 149 (257)
+++|.. +..+++.+|++++|+|+++ +|+.... ..+..+++.+.+
T Consensus 79 ~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 157 (187)
T 3c5c_A 79 LDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF 157 (187)
T ss_dssp ---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH
T ss_pred CCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc
Confidence 998765 3568889999999999987 4543211 112223333334
Q ss_pred CCCccceEEecc-cccccccccccccC
Q psy12244 150 NIDKKSVLRIWH-RRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~~~~~~i~iSa-~~g~gi~~l~~~i~ 175 (257)
+ .+++++|| ++|.|++++++.|.
T Consensus 158 ~---~~~~e~Sa~~~g~gv~~lf~~l~ 181 (187)
T 3c5c_A 158 G---CLFFEVSACLDFEHVQHVFHEAV 181 (187)
T ss_dssp T---CEEEECCSSSCSHHHHHHHHHHH
T ss_pred C---CcEEEEeecCccccHHHHHHHHH
Confidence 4 46999999 89999999988775
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=7.2e-16 Score=123.81 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=83.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|.+|+|||||+++|++....+... ...++.+.....+.+ ++....+.+|||+|.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-------------~~~~g~d~~~~~i~~----~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-------------CEVLGEDTYERTLMV----DGESATIILLDMWEN 97 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEEEEEEE----TTEEEEEEEECCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-------------CCccceeeEEEEEEE----CCeeeEEEEeecCCC
Confidence 456789999999999999999997533222111 001111111122222 445578899999999
Q ss_pred cc-cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-H-HHHHHHHHHHhCC
Q psy12244 106 VD-FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-P-EACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~-~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~-~~~~~~~~~~~~~ 151 (257)
.. +......+++.+|++|+|+|.++ +|+.+.. . .+..+.+...++
T Consensus 98 ~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~- 176 (211)
T 2g3y_A 98 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD- 176 (211)
T ss_dssp THHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-
T ss_pred cchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-
Confidence 87 33344445678999999999987 5653211 1 111122233333
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||++|.||+++++.|..
T Consensus 177 --~~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 177 --CKFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 157
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.62 E-value=4.7e-16 Score=131.90 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=88.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+...... .....+.|++.....+.+.+ ...+.+|||||+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~-------------~~~~~~~Ti~~~~~~~~~~~-----~~~l~i~Dt~G~~~ 64 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF-------------DTRRLGATIDVEHSHLRFLG-----NMTLNLWDCGGQDV 64 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG-------------GGGGCCCCCSEEEEEEEETT-----TEEEEEEEECCSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-------------cccCcCCccceEEEEEEeCC-----ceEEEEEECCCcHH
Confidence 4689999999999999999996532211 12245667766666555421 37899999999999
Q ss_pred c-----HHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCHH-----HHHHHH
Q psy12244 108 F-----SNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANPE-----ACEEQL 145 (257)
Q Consensus 108 ~-----~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~~-----~~~~~~ 145 (257)
| ...+...++.+|++|+|+|+++ +|+.+.+.. ...+++
T Consensus 65 ~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~ 144 (307)
T 3r7w_A 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNL 144 (307)
T ss_dssp HHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHH
Confidence 8 4455667789999999999987 666542111 122333
Q ss_pred ---HHHhCCCccceEEecccccccccccccccC
Q psy12244 146 ---QTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ---~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+.++.+..+++++||++ .|+.+++..+.
T Consensus 145 ~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 145 SETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp HHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence 333344357899999999 77766665544
No 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.61 E-value=1.6e-15 Score=119.79 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=80.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+++|++....+... ...++.+.....+.+ ++....+.+|||+|..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-------------XEVLGEDTYERTLMV----DGESATIILLDMWENK 67 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------GGGCTTEEEEEEEE----TTEEEEEEEECCCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-------------ccccceeEEEEEEEE----CCeEEEEEEEEeccCc
Confidence 45789999999999999999998644322111 011111211222333 4455678899999986
Q ss_pred c-cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-H-HHHHHHHHHHhCCC
Q psy12244 107 D-FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-P-EACEEQLQTLFNID 152 (257)
Q Consensus 107 ~-~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~-~~~~~~~~~~~~~~ 152 (257)
. +......+++.+|++++|+|.++ +|+.... . ......+...++
T Consensus 68 ~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-- 145 (192)
T 2cjw_A 68 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-- 145 (192)
T ss_dssp ---CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT--
T ss_pred chhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC--
Confidence 5 22233445678999999999987 5553211 1 111112222222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||++|.||+++++.|..
T Consensus 146 -~~~~e~SA~~g~~v~~lf~~l~~ 168 (192)
T 2cjw_A 146 -XKFIETSAAVQHNVKELFEGIVR 168 (192)
T ss_dssp -CEEEECBTTTTBSHHHHHHHHHH
T ss_pred -CceEEeccccCCCHHHHHHHHHH
Confidence 46999999999999999988863
No 159
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.60 E-value=1.9e-15 Score=124.31 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=60.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+|+|++........ ...+.|.......+.+.+ ..+.||||||+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~------------~~~~~T~~~~~~~~~~~~------~~i~liDTPG~ 80 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL------------GATSVTRACTTGSRRWDK------CHVEVVDTPDI 80 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------------------CCSCEEEEEEETT------EEEEEEECCSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC------------CCCCccccEEEEEEEECC------cEEEEEECCCC
Confidence 356789999999999999999998754332111 112345444445555555 78999999998
Q ss_pred --------cccHHHHHHhh----hhcceEEEEEecCc
Q psy12244 106 --------VDFSNEVTRSL----AACQGVVLLIDANQ 130 (257)
Q Consensus 106 --------~~~~~~~~~~~----~~aD~~ilVvd~~~ 130 (257)
..+...+...+ ..+|++|+|+|++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp SSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC
Confidence 45555555555 88999999999886
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.60 E-value=1.6e-16 Score=141.43 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=77.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+|+|++....+... ..+.|.+.....+.+.+ ..+.||||||+.++
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-------------~~gtT~d~~~~~i~~~g------~~v~liDT~G~~~~ 285 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-------------LPGTTRDVVESQLVVGG------IPVQVLDTAGIRET 285 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSC-------------CTTCCHHHHHHEEEETT------EEEEECC-------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccC-------------CCCeeEEEEEEEEEECC------EEEEEEECCccccc
Confidence 579999999999999999998865443221 23445554444555555 78999999999775
Q ss_pred HHH--------HHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 109 SNE--------VTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~--------~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
... ....+..+|++++|+|++. +|+....... .+.++ ....++
T Consensus 286 ~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~---~~~~~--~~~~~~ 360 (462)
T 3geh_A 286 SDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLIT---SLEYP--ENITQI 360 (462)
T ss_dssp -------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGST---TCCCC--TTCCCE
T ss_pred hhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhH---HHHHh--ccCCcE
Confidence 433 2335678999999999985 4443221100 11110 023468
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++||++|.|+++|++.|..
T Consensus 361 i~iSAktg~Gi~eL~~~i~~ 380 (462)
T 3geh_A 361 VHTAAAQKQGIDSLETAILE 380 (462)
T ss_dssp EEEBTTTTBSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998874
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.56 E-value=2e-15 Score=119.73 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=86.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|+.|+|||||+++|++..... ...+.++.+.....+.+ ++....+.+|||||++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~~t~~~~~~~~~i~~----~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQV----DGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------CCCSCEEEEEEEEE----TTEEEEEEEEECSSGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEE----CCEEEEEEEEECCCch
Confidence 46789999999999999999997643211 11122223333334444 3445678899999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.+...+...++.+|++++|+|... +|+.+.. .......+... ...
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~---~~~ 142 (199)
T 2f9l_A 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK---NNL 142 (199)
T ss_dssp GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH---TTC
T ss_pred hhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH---cCC
Confidence 887766777788999999999886 5543211 11112222222 234
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||+++.|++++++.|..
T Consensus 143 ~~~d~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 143 SFIETSALDSTNVEEAFKNILT 164 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 6899999999999999988763
No 162
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.55 E-value=3e-15 Score=117.25 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=80.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC----
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG---- 104 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG---- 104 (257)
.+|+++|++|+|||||+++|++.... ....++.|... ..+.+. .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~t~~~--~~~~~~--------~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR--------------RGKRPGVTRKI--IEIEWK--------NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS--------------SSSSTTCTTSC--EEEEET--------TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc--------------cCCCCCcccee--EEEecC--------CEEEEECCCcccc
Confidence 57999999999999999999753211 11122333322 222221 478999999
Q ss_pred -------CcccHHHHHHhhh----hcceEEEEEecCc-------------------------------------cCCCCC
Q psy12244 105 -------HVDFSNEVTRSLA----ACQGVVLLIDANQ-------------------------------------VDLKNA 136 (257)
Q Consensus 105 -------~~~~~~~~~~~~~----~aD~~ilVvd~~~-------------------------------------~D~~~~ 136 (257)
++.|...+..+++ .+++++.|+|+.. +|+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 58 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 4455555554444 4567888888752 666543
Q ss_pred CHHHHHHHHHHHhCCCc----cceEEecccccccccccccccCC
Q psy12244 137 NPEACEEQLQTLFNIDK----KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~~----~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. .+..+++.+.++... .+++++||++|.|+++++++|..
T Consensus 138 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 180 (190)
T 2cxx_A 138 V-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 180 (190)
T ss_dssp H-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHH
Confidence 2 344555666666542 35799999999999999988863
No 163
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.55 E-value=1.6e-15 Score=138.01 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=82.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeE--------EEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTAS--------LRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--------~~~~~~~~~~~~~~ 97 (257)
.+..+|+++|.+|+|||||+++|++.... . ....|+...... +.... ++....+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--------------~--~~~~t~g~~~~~~~~~~~~~v~~~~--~~~~~~~ 100 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--------------P--KESQTHGLNVVTKQAPNIKGLENDD--ELKECLF 100 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCS--TTTTCEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--------------C--CCCCccceEEEEeccccccceeecC--CCceEEE
Confidence 45678999999999999999999753210 0 111122111111 11111 2345789
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
.+|||||++.|.......++.+|++|+|+|++. +|+.+... ...+++++.+..
T Consensus 101 ~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~-v~~~~~~~~~~~ 179 (535)
T 3dpu_A 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYN-IEQKKINERFPA 179 (535)
T ss_dssp EEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCC-CCHHHHHHHCGG
T ss_pred EEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccc-cCHHHHHHHHHh
Confidence 999999999988877788889999999999986 67654221 112333333332
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++++||++|.|++++++.|..
T Consensus 180 ~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 180 IENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp GTTCEEECCC-----CTTHHHHHHH
T ss_pred cCCceEEEecCcccCHHHHHHHHHH
Confidence 3356999999999999999988864
No 164
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=2.4e-15 Score=117.82 Aligned_cols=134 Identities=14% Similarity=0.212 Sum_probs=78.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|++..... .....+.+..+.....+.+.. .++....+.+|||||+++|
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~------------~~~~~~t~g~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~ 69 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSD------------LGMQSATVGIDVKDWPIQIRD-KRKRDLVLNVWDFAGREEF 69 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CSEEEEEEEC----------CEEEEEEECSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCcc------------CCCcceeccEEeEEeeecccc-CCCCceEEEEEecCCCHHH
Confidence 579999999999999999996421111 001112222222222221110 0123468999999999988
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH-HHHHHHH-HHHhCCCccc-
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP-EACEEQL-QTLFNIDKKS- 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~-~~~~~~~-~~~~~~~~~~- 155 (257)
......+++.+|++++|+|.++ +|+.+... ....... ..+......+
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPA 149 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCE
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcc
Confidence 8777778889999999999876 45543211 0011122 2222111233
Q ss_pred ---eEEecccccc-cccccccccC
Q psy12244 156 ---VLRIWHRRCF-SCADCHRSLD 175 (257)
Q Consensus 156 ---~i~iSa~~g~-gi~~l~~~i~ 175 (257)
++++||++|. |+++|++.|.
T Consensus 150 ~~~~~~~Sa~~~~~~~~~l~~~i~ 173 (184)
T 2zej_A 150 IRDYHFVNATEESDALAKLRKTII 173 (184)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHHH
T ss_pred hhheEEEecccCchhHHHHHHHHH
Confidence 8999999996 9999988775
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.54 E-value=3.5e-15 Score=127.24 Aligned_cols=129 Identities=12% Similarity=0.048 Sum_probs=85.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+++|+..... .. ....+.+.....+.. ++....+.||||||++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~-------------~~~t~~~~~~~~~~~----~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GE-------------YIPTVFDNYSANVMV----DGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CS-------------CCCCSEEEEEEEEEE----TTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cc-------------cCCcccceeEEEEEE----CCEEEEEEEEeCCCch
Confidence 3478999999999999999999763211 00 011111111222222 4455778899999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--------------HHHHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------------PEACE 142 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------------~~~~~ 142 (257)
+|...+..+++.+|++++|+|+++ +|+.... .....
T Consensus 215 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 998888888999999999999987 3332210 00011
Q ss_pred HHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+.+.++ ..+++++||++|.|++++++.|..
T Consensus 295 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 295 LAMAKEIG--AVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp HHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHcC--CcEEEEecCCCCcCHHHHHHHHHH
Confidence 11222222 237999999999999999987763
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.54 E-value=1e-14 Score=121.73 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=70.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+|+|+.......... .......++++.+ .....+.. ++....+++|||||+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~------~~~~~~~~t~~~~--~~~~~~~~--~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP------GPSHRIKKTVQVE--QSKVLIKE--GGVQLLLTIVDTPGF 75 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------------CCCE--EEEEEECC----CCEEEEEEECCCC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCC------CcccccCCceEEE--EEEEEEec--CCeEEEEEEEECCCc
Confidence 3467899999999999999999865322211000 0000012223333 33333322 344568999999998
Q ss_pred cc-------cHHHH-------HHhhhh-------------cceEEEEEecCc--------------------------cC
Q psy12244 106 VD-------FSNEV-------TRSLAA-------------CQGVVLLIDANQ--------------------------VD 132 (257)
Q Consensus 106 ~~-------~~~~~-------~~~~~~-------------aD~~ilVvd~~~--------------------------~D 132 (257)
.+ +.... ..++.. +|+++++++... +|
T Consensus 76 ~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D 155 (274)
T 3t5d_A 76 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKAD 155 (274)
T ss_dssp SCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGG
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccC
Confidence 43 22222 333333 678888886554 55
Q ss_pred CCCC-CHHHHHHHHHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 133 LKNA-NPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 133 ~~~~-~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+... ......+.+.+.+.....+++++||++|+|++++++.|...
T Consensus 156 ~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 156 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 4321 12333444555443344568999999999999999888743
No 167
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.52 E-value=6.7e-15 Score=126.24 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=85.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
.+|+++|.+|+|||||+++|+.....+. .....|..+....+.+.. ...+.||||||+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~--------------~~~ftTl~p~~g~v~~~~-----~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--------------DYHFTTLVPNLGMVETDD-----GRSFVMADLPGLIEG 219 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEES--------------STTSSCCCCCEEEEECSS-----SCEEEEEEHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccc--------------cCCccccCceEEEEEeCC-----CceEEEecCCCCccc
Confidence 4799999999999999999965322111 122345555555555432 15789999999643
Q ss_pred ------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHHH
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQLQ 146 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~~ 146 (257)
+.......+..+|++|+|+|++. +|+.. ..+..++++
T Consensus 220 a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~--~~e~~~~l~ 297 (342)
T 1lnz_A 220 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE--AAENLEAFK 297 (342)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT--HHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC--CHHHHHHHH
Confidence 44556666778999999999952 44432 223344555
Q ss_pred HHhCCCccceEEecccccccccccccccCC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.+... .+++++||++|.|+++|++.|..
T Consensus 298 ~~l~~~-~~v~~iSA~tg~gi~eL~~~l~~ 326 (342)
T 1lnz_A 298 EKLTDD-YPVFPISAVTREGLRELLFEVAN 326 (342)
T ss_dssp HHCCSC-CCBCCCSSCCSSTTHHHHHHHHH
T ss_pred HHhhcC-CCEEEEECCCCcCHHHHHHHHHH
Confidence 555422 56899999999999999988863
No 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.52 E-value=4.9e-15 Score=116.87 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=84.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|+.|+|||||+++|++..... ...+.++.+.....+.+ ++....+.+|||||+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~~t~~~~~~~~~i~~----~g~~~~~~i~Dt~g~ 88 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQV----DGKTIKAQIWDTAGL 88 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC--------------SCCCCCSEEEEEEEEEE----TTEEEEEEEEEECSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceEEEEEEEEE----CCEEEEEEEEECCCC
Confidence 456789999999999999999997643211 01122333333344444 334467788999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+++...+...++.+|++++|+|... +|+.+.. .......+... ..
T Consensus 89 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~---~~ 165 (191)
T 1oix_A 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK---NG 165 (191)
T ss_dssp CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH---TT
T ss_pred cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH---cC
Confidence 9887777777788999999999765 3332110 11112222222 23
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++.+||+++.|++++++.|.
T Consensus 166 ~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 166 LSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CEEEECCTTTCTTHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHH
Confidence 4688999999999999887764
No 169
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=116.49 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=58.6
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
..+....++|+++|++|+|||||+|+|++....... ....++|.......+.+.+ ..+.|||
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~------------~~~~~~t~~~~~~~~~~~~------~~i~liD 84 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG------------TAAKSITKKCEKRSSSWKE------TELVVVD 84 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------------------CCSCEEEEEEETT------EEEEEEE
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccC------------CCCCceeeeEEEEEEEeCC------ceEEEEE
Confidence 445567889999999999999999999764331100 1112455555555566655 7899999
Q ss_pred CCCCcc-----------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 102 TPGHVD-----------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 102 tpG~~~-----------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||+.+ +...+...+..+|++|+|+|++.
T Consensus 85 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR 124 (239)
T ss_dssp CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC
T ss_pred CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC
Confidence 999653 33444445567899999999865
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.52 E-value=5.8e-14 Score=121.53 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=81.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+.|+++|++|+|||||+|+|++... ..+...+.|.+.....+.+.+ ..+.+|||||+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~--------------~~~~~~~~T~d~~~~~i~~~g------~~v~l~DT~G~i 237 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ--------------KVDTKLFTTMSPKRYAIPINN------RKIMLVDTVGFI 237 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------------------CCSCEEEEEETT------EEEEEEECCCBC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc--------------cccCCcccccCCEEEEEEECC------EEEEEEeCCCch
Confidence 345699999999999999999975321 112234566666666677655 678999999973
Q ss_pred c-----c---HHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCHHHHHHHH-
Q psy12244 107 D-----F---SNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANPEACEEQL- 145 (257)
Q Consensus 107 ~-----~---~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~~~~~~~~- 145 (257)
+ + ...+...+..+|++++|+|++. +|+.........+.+
T Consensus 238 ~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~ 317 (364)
T 2qtf_A 238 RGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVE 317 (364)
T ss_dssp SSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 2 1 1234456788999999999864 444332222211122
Q ss_pred --HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 --QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 --~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+.....+++++||++|.|++++++.|..
T Consensus 318 ~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 318 KLSKELYSPIFDVIPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHH
Confidence 2223122336899999999999999988863
No 171
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.50 E-value=4e-14 Score=122.47 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=79.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+|+|++..... ....+.|.......+...+ ..+.+|||||+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~--------------~~~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~ 224 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEI--------------ASYPFTTRGINVGQFEDGY------FRYQIIDTPGL 224 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEE--------------ECCTTCSSCEEEEEEEETT------EEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc--------------CCCCCeeeceeEEEEEecC------ceEEEEeCCCc
Confidence 356789999999999999999996532111 0112233333333333333 68999999998
Q ss_pred cccH---------HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHH
Q psy12244 106 VDFS---------NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQL 145 (257)
Q Consensus 106 ~~~~---------~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~ 145 (257)
.++. .........+|++++|+|++. +|+.. ... .+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~--~~~-~~~~ 301 (357)
T 2e87_A 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD--EEN-IKRL 301 (357)
T ss_dssp SSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC--HHH-HHHH
T ss_pred cccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC--hHH-HHHH
Confidence 6531 122223346899999999764 33322 111 1222
Q ss_pred HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.+.....+++++||++|+|+++++++|..
T Consensus 302 ~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 302 EKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp HHHHHHTTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEeCCCCcCHHHHHHHHHH
Confidence 2222112356899999999999999988863
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.49 E-value=3.9e-14 Score=119.26 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=53.0
Q ss_pred EEEEEeCCCCCc-------------ccHHHHHHhhhhcceEE-EEEecCc---------------------------cCC
Q psy12244 95 YLLNLIDTPGHV-------------DFSNEVTRSLAACQGVV-LLIDANQ---------------------------VDL 133 (257)
Q Consensus 95 ~~~~liDtpG~~-------------~~~~~~~~~~~~aD~~i-lVvd~~~---------------------------~D~ 133 (257)
..+.||||||+. .+...+..+++.++.++ +|+|++. +|+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcccc
Confidence 578999999974 34455667777888666 6899875 565
Q ss_pred CCCCHHHHHHHHHHHh-C--CCccceEEecccccccccccccccC
Q psy12244 134 KNANPEACEEQLQTLF-N--IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~--~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+... ...+.++..+ . ....+++++||++|.|++++++.|.
T Consensus 205 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 205 MDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp SCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHH
T ss_pred CCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHH
Confidence 43221 0122222211 1 1234689999999999999998876
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=3.7e-14 Score=113.85 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
....+.++|+++|++|+|||||+++|++........ ....+... .+. ...+.+|||
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-------------~~~~~~~~-----~~~------~~~~~l~Dt 62 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-------------SQEPLSAA-----DYD------GSGVTLVDF 62 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-------------CSSCEEET-----TGG------GSSCEEEEC
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-------------ecCceEEE-----Eee------CceEEEEEC
Confidence 334567899999999999999999997643211000 00111111 012 257889999
Q ss_pred CCCcccHHHHHHhhhh----cceEEEEEecC
Q psy12244 103 PGHVDFSNEVTRSLAA----CQGVVLLIDAN 129 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~----aD~~ilVvd~~ 129 (257)
||++++...+..+++. +|++|+|+|++
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 63 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp CCCGGGTHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHhccccCCEEEEEEECC
Confidence 9999998888888877 89999999998
No 174
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.43 E-value=9.4e-14 Score=117.59 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=81.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..|+|||||++++.+.... . .....+.|+......+ . ....+.+|||||+++|.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~--~-----------~~~~~~~Tig~~~~~v--~-----~~v~LqIWDTAGQErf~ 60 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP--L-----------DTLYLESTSNPSLEHF--S-----TLIDLAVMELPGQLNYF 60 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS--G-----------GGTTCCCCCSCCCEEE--C-----SSSCEEEEECCSCSSSC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC--C-----------ccceecCeeeeeeEEE--c-----cEEEEEEEECCCchhcc
Confidence 5899999999999999987532110 0 0011234444333332 1 12689999999999996
Q ss_pred H---HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH-----HHHHHHHHHHh-
Q psy12244 110 N---EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP-----EACEEQLQTLF- 149 (257)
Q Consensus 110 ~---~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~-----~~~~~~~~~~~- 149 (257)
. .+..+++.++++|+|+|+++ +|+...+. +.+..+..+.+
T Consensus 61 ~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la 140 (331)
T 3r7w_B 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELL 140 (331)
T ss_dssp CCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTS
T ss_pred chhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHH
Confidence 3 45778899999999999986 67654321 12222222223
Q ss_pred CC----CccceEEecccccccccccccccC
Q psy12244 150 NI----DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~----~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.. ...+++++||++ .||.+.|..+.
T Consensus 141 ~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv 169 (331)
T 3r7w_B 141 ELGLDGVQVSFYLTSIFD-HSIYEAFSRIV 169 (331)
T ss_dssp SSSCSCCCEEEECCCSSS-SHHHHHHHHHH
T ss_pred hhcccccCceEEEeccCC-CcHHHHHHHHH
Confidence 21 246799999998 58988776664
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.38 E-value=1.2e-12 Score=108.30 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=71.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+|+|++........ ..+.|.......+.+.+ ..++||||||+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~------~~l~liDTpG~~ 95 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-------------FQAEGLRPVMVSRTMGG------FTINIIDTPGLV 95 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-------------SCC-CCCCEEEEEEETT------EEEEEEECCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-------------CCCcceeeEEEEEEECC------eeEEEEECCCCC
Confidence 56789999999999999999998744322111 22334444444555554 789999999998
Q ss_pred ccHHHH---H----Hhh--hhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCCc-cceEEeccc
Q psy12244 107 DFSNEV---T----RSL--AACQGVVLLIDANQVDLKNANPEACEEQLQTLFNIDK-KSVLRIWHR 162 (257)
Q Consensus 107 ~~~~~~---~----~~~--~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSa~ 162 (257)
+|.... . ..+ ..+|++++|++.+.... ........+.+.+.++... .|++.+-.|
T Consensus 96 ~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 96 EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV-DELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC-CHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC-CHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 753221 1 122 27899999987764221 1112355666776655322 255555443
No 176
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.9e-14 Score=116.93 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.0
Q ss_pred CCCCceeeEEEEecC---------CCChHHHHHHHHH
Q psy12244 23 IPIARIRNFSIIAHV---------DHGKSTLADRLLE 50 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~---------~~GKStLi~~l~~ 50 (257)
.+..+..+|+++|.+ |+|||||+++|++
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 334566899999999 9999999999975
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.33 E-value=5.9e-13 Score=112.90 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCcc-------------cHHHHHHhhhhcceEEEEEecC
Q psy12244 95 YLLNLIDTPGHVD-------------FSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 95 ~~~~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
..+.||||||+.+ +...+..++..+|++++|+|+.
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~ 178 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPA 178 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEES
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 5799999999864 5566777889999999999974
No 178
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=1.1e-12 Score=114.74 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=46.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEee--c-------c--------cCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT--S-------I--------LDG 92 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~-------~--------~~~ 92 (257)
+|+|+|.+|+|||||+|+|++.. ... ...++.|++.......+. . . .++
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~-------------~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~ 67 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEI-------------ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNG 67 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Ccc-------------cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCC
Confidence 69999999999999999997643 111 112334444443332211 0 0 011
Q ss_pred -ccEEEEEeCCCCCcccH-------HHHHHhhhhcceEEEEEecCc
Q psy12244 93 -EEYLLNLIDTPGHVDFS-------NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 -~~~~~~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvd~~~ 130 (257)
....+.||||||+.+.. ......++.+|++++|+|+..
T Consensus 68 ~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 68 LALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred cceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 13679999999986521 112245688999999999964
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.32 E-value=6.2e-13 Score=124.13 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcc---cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD---FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~---~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.||||||+.+ ....+..++..+|++|+|+|++.
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~ 212 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ 212 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC
Confidence 589999999766 44566678889999999999976
No 180
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.29 E-value=4.5e-12 Score=109.59 Aligned_cols=85 Identities=20% Similarity=0.368 Sum_probs=67.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+....|+|+|.||+|||||+|+|++....+ ...++.|+++....+.+.+ ..+.|+||||.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--------------~~~pftT~~~~~g~~~~~~------~~i~l~D~pGl 129 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEA--------------AEYEFTTLVTVPGVIRYKG------AKIQMLDLPGI 129 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCG--------------GGTCSSCCCEEEEEEEETT------EEEEEEECGGG
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcc--------------cCCCCceeeeeeEEEEeCC------cEEEEEeCCCc
Confidence 345689999999999999999997644322 2245678888888888877 89999999998
Q ss_pred cc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+ ........++.+|++++|+|+.+
T Consensus 130 ~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~ 161 (376)
T 4a9a_A 130 IDGAKDGRGRGKQVIAVARTCNLLFIILDVNK 161 (376)
T ss_dssp CCC-----CHHHHHHHHHHHCSEEEEEEETTS
T ss_pred cCCchhhhHHHHHHHHHHHhcCccccccccCc
Confidence 54 33456677899999999999986
No 181
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.29 E-value=1.4e-12 Score=112.06 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=54.0
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCC-CHHHHHHHHHHHh--
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNA-NPEACEEQLQTLF-- 149 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~-~~~~~~~~~~~~~-- 149 (257)
+.+.||||||+.++... ....+|++++|+|+.. +|+... +.....+++++.+
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~ 225 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHI 225 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHh
Confidence 68999999998876543 3588999999999864 554332 1222333444422
Q ss_pred -CC--C--ccceEEecccccccccccccccCC
Q psy12244 150 -NI--D--KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 -~~--~--~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+. . ..+++++||++|.|++++++.|..
T Consensus 226 ~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~ 257 (341)
T 2p67_A 226 LRRKYDEWQPRVLTCSALEKRGIDEIWHAIID 257 (341)
T ss_dssp SCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred ccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 21 0 246899999999999999988874
No 182
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.28 E-value=3.7e-12 Score=110.00 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=54.4
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCC-CHHHHHHHHHHHh-
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNA-NPEACEEQLQTLF- 149 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~-~~~~~~~~~~~~~- 149 (257)
.+.+.||||||...-. ...+..+|++++|+|+.. +|+... ......+++.+.+
T Consensus 171 ~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~ 247 (355)
T 3p32_A 171 GFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIR 247 (355)
T ss_dssp TCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHh
Confidence 3689999999976532 233588999999999875 444221 1223334444433
Q ss_pred --C----CCccceEEecccccccccccccccCC
Q psy12244 150 --N----IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 --~----~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. ....|++++||++|.|+++|++.|..
T Consensus 248 ~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~ 280 (355)
T 3p32_A 248 LIYPREALWRPPVLTMSAVEGRGLAELWDTVER 280 (355)
T ss_dssp HHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHH
T ss_pred hccccccCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 1 11357999999999999999998874
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.27 E-value=1.6e-11 Score=102.05 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=68.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+|+|++........ ..+.|.......+...+ ..+.||||||+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~------~~l~iiDTpG~~ 98 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-------------FQSEGPRPVMVSRSRAG------FTLNIIDTPGLI 98 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-------------SSCCCSSCEEEEEEETT------EEEEEEECCCSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-------------CCCcceeeEEEEEeeCC------eEEEEEECCCCC
Confidence 46789999999999999999998644321111 12233332223333333 789999999997
Q ss_pred ccH---HHHH----Hh--hhhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCCc-cceEEecccc
Q psy12244 107 DFS---NEVT----RS--LAACQGVVLLIDANQVDLKNANPEACEEQLQTLFNIDK-KSVLRIWHRR 163 (257)
Q Consensus 107 ~~~---~~~~----~~--~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSa~~ 163 (257)
++. .... .+ ...+|++++|+|++.-.. ........+.+.+.++... .|++.+-.|.
T Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~-~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 99 EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV-DNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC-CHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC-CHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 753 2222 22 236899999988763111 1112344555655544321 3566555544
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.26 E-value=7.8e-12 Score=99.48 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
++..+..+|+++|++|+|||||+++|++.... .......|.+... ..+.+.. .+.+|||
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~------------~~~~~~~G~~~~~--~~~~~~~-------~~~l~Dt 79 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL------------ARTSKTPGRTQLI--NLFEVAD-------GKRLVDL 79 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------------------CCE--EEEEEET-------TEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcc------------ccccCCCccceee--EEEEecC-------CEEEEEC
Confidence 55566678999999999999999998542200 0001122333221 1122211 4679999
Q ss_pred CCCcc----------cHHHHHHhh---hhcceEEEEEecCc--------------------------cCCCCCC-HHHHH
Q psy12244 103 PGHVD----------FSNEVTRSL---AACQGVVLLIDANQ--------------------------VDLKNAN-PEACE 142 (257)
Q Consensus 103 pG~~~----------~~~~~~~~~---~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~ 142 (257)
||+.. +.......+ ..+|++++|+|+.. +|+.... .+...
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~ 159 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQL 159 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHH
Confidence 99853 222222333 46899999999875 3432211 11113
Q ss_pred HHHHHHhC-CC-ccceEEecccccccccccccccCC
Q psy12244 143 EQLQTLFN-ID-KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 143 ~~~~~~~~-~~-~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.++..+. .. ..+++|+||+++.|++++++.|..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 160 NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 33443332 11 246789999999999999988864
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=4.8e-12 Score=109.45 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=59.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+...... .. ..........+++++. ...+.+.. .+....+++|||||+.+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~-~~----~~~~~~~~~~~ti~~~--~~~~~~~~--~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYP-ER----VIPGAAEKIERTVQIE--ASTVEIEE--RGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC--------------------CEEEE--EEEEC------CEEEEEEEEC------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCC-CC----cccCCCcccCCceeEE--EEEEEeec--CCcccceEEEEeccccc
Confidence 4689999999999999999985432111 00 0000001111222222 22222221 23346899999999943
Q ss_pred -------cHHHHH-------Hhhhhc-------------ceEEEEEecCc--------------------------cCCC
Q psy12244 108 -------FSNEVT-------RSLAAC-------------QGVVLLIDANQ--------------------------VDLK 134 (257)
Q Consensus 108 -------~~~~~~-------~~~~~a-------------D~~ilVvd~~~--------------------------~D~~ 134 (257)
|...+. .+++.+ |+++++++... +|+.
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 187 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCC
Confidence 322222 333332 45778887622 5654
Q ss_pred CCC-HHHHHHHHHHHhCCCccceEEeccccccccccccccc
Q psy12244 135 NAN-PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 135 ~~~-~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i 174 (257)
... .....+++.+.+....++++++||++|.| ++.+..+
T Consensus 188 ~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l 227 (361)
T 2qag_A 188 TLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQ 227 (361)
T ss_dssp CHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHH
Confidence 321 12222455555544456899999999998 6555443
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.25 E-value=1.7e-12 Score=112.11 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+++|.+|+|||||+|+|++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999997644
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=1.1e-11 Score=108.78 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=81.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
..|+|+|++|+|||||+++|+.....+.. ....|.......+.+.. ...++++||||+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--------------~~ftTl~p~~G~V~~~~-----~~~~~l~DtpGli~~ 218 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--------------YPFTTLSPNLGVVEVSE-----EERFTLADIPGIIEG 218 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECC--------------CTTCSSCCEEEEEECSS-----SCEEEEEECCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccC--------------cccceecceeeEEEecC-----cceEEEEeccccccc
Confidence 45899999999999999999653221111 11123333333344321 25788999999853
Q ss_pred ------cHHHHHHhhhhcceEEEEEecC-c------------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDAN-Q------------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~-~------------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+.......+..+|.+++|+|+. . +|+... ...+.+.+.+.
T Consensus 219 a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~ 295 (416)
T 1udx_A 219 ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALA 295 (416)
T ss_dssp GGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHH
Confidence 2233344566799999999995 3 665432 33444444442
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++++|+++|++.|..
T Consensus 296 ~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 296 REGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp TTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCCeEEEEECCCccCHHHHHHHHHH
Confidence 22356999999999999999888763
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.22 E-value=1.3e-11 Score=106.84 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=52.2
Q ss_pred EEEEEeCCCCCccc-------------HHHHHHhhhhcceEEEEEecCc----------------------------cCC
Q psy12244 95 YLLNLIDTPGHVDF-------------SNEVTRSLAACQGVVLLIDANQ----------------------------VDL 133 (257)
Q Consensus 95 ~~~~liDtpG~~~~-------------~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~ 133 (257)
..++||||||+.++ ...+..++..+|++|+|+|+.. +|+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCcc
Confidence 46899999999876 5667778899999999998743 555
Q ss_pred CCCCHHHHHHHHHHHhCCCccceEEeccccccccccccccc
Q psy12244 134 KNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i 174 (257)
.+... ...+.+.........+++++|++++.++++.+..+
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 216 MDKGT-DAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp CCTTC-CSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred CCCcc-cHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 33211 11122222111123468999999999988776543
No 189
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.19 E-value=5.5e-12 Score=101.31 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=79.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccc-----cCCCcccccchHHHhhhCceE-eceeeE-EEeec------ccCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVL-----SSGSSQVLDSLQVEQERGITV-KAQTAS-LRYTS------ILDG 92 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~-----~~~~~~~~d~~~~e~~~g~t~-~~~~~~-~~~~~------~~~~ 92 (257)
.+.++|+++|++|+|||||+++|+....... ..+.....|....+ ..+.+. ...... ..+.. +...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 4567899999999999999999987632210 00111111111111 112221 100000 00000 0001
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCC---CCHHHHHHHHHH
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKN---ANPEACEEQLQT 147 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~---~~~~~~~~~~~~ 147 (257)
....+.+|||+|+..... .....++.+++|+|+.. +|+.. .+.++..+.++.
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 183 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKL 183 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHH
Confidence 235788999999521110 00124678899999765 56532 234444555544
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. + ...+++++||++|.|+++++++|..
T Consensus 184 ~-~-~~~~i~~~Sa~~g~gi~~l~~~l~~ 210 (221)
T 2wsm_A 184 I-N-PRAKIIEMDLKTGKGFEEWIDFLRG 210 (221)
T ss_dssp H-C-TTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred h-C-CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 3 2 2457999999999999999988863
No 190
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.15 E-value=9e-12 Score=97.73 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=52.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.++|+++|++|+|||||+++|++...... ......+.+.+ +.. ..+.+|||||+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-----------~~~~~~~~~~~-------~~~------~~~~l~Dt~G~ 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------VVSQEPLSAAD-------YDG------SGVTLVDFPGH 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------C-------CCC------TTCSEEEETTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-----------cccCCCceeee-------ecC------CeEEEEECCCC
Confidence 4567899999999999999999976432110 00011111111 122 56889999999
Q ss_pred cccHHHHHHhhhh----cceEEEEEecC
Q psy12244 106 VDFSNEVTRSLAA----CQGVVLLIDAN 129 (257)
Q Consensus 106 ~~~~~~~~~~~~~----aD~~ilVvd~~ 129 (257)
..+...+..++.. +|++|+|+|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 102 VKLRYKLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp CBSSCCHHHHHHHHGGGEEEEEEEEETT
T ss_pred chHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 9876665655554 89999999987
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.14 E-value=3.8e-11 Score=112.00 Aligned_cols=144 Identities=16% Similarity=0.230 Sum_probs=81.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCC-------------------------Ccccccc--hHHH------h--
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-------------------------SSQVLDS--LQVE------Q-- 71 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~-------------------------~~~~~d~--~~~e------~-- 71 (257)
..+.|+++|.+++|||||+|+|++......... ...+.+. ...+ .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 467899999999999999999987543221110 0000000 0000 0
Q ss_pred --hhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-------------cHHHHHHhh-hhcceEEEEEecCc-----
Q psy12244 72 --ERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-------------FSNEVTRSL-AACQGVVLLIDANQ----- 130 (257)
Q Consensus 72 --~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-------------~~~~~~~~~-~~aD~~ilVvd~~~----- 130 (257)
..+++.+.....+.... ...++|+||||... +...+..++ ..+|++++|+|++.
T Consensus 130 g~~~~is~~~i~l~I~~P~-----~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~ 204 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-----VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS 204 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-----CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSC
T ss_pred CCCCcccccceEEEEecCC-----CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchh
Confidence 11222222222222221 24689999999754 222333344 46899999999985
Q ss_pred ----------------------cCCCCCCHHHHHHHHH-HHh--CCCccceEEecccccccccccccccCC
Q psy12244 131 ----------------------VDLKNANPEACEEQLQ-TLF--NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 131 ----------------------~D~~~~~~~~~~~~~~-~~~--~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|+...... ....+. +.+ .....+++++||++|.|+++|++.+..
T Consensus 205 d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~-~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 205 DALKIAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECTTSSCTTCC-SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcccCCcchh-hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 565432210 011111 111 123356899999999999999888764
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.14 E-value=5e-11 Score=102.64 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=48.5
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------c-----CC------CCCCHH---H---HHHHHHHHhCC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------V-----DL------KNANPE---A---CEEQLQTLFNI 151 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------~-----D~------~~~~~~---~---~~~~~~~~~~~ 151 (257)
+.+.|+||||...-. ......+|++++|+|+.. + +. .+.|.. . ....+...+..
T Consensus 167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~ 243 (349)
T 2www_A 167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKL 243 (349)
T ss_dssp CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHh
Confidence 678999999975322 223568999999999864 0 10 112211 1 22233322211
Q ss_pred -------CccceEEecccccccccccccccCC
Q psy12244 152 -------DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 -------~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++++||++|.|+++|+++|..
T Consensus 244 ~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~ 275 (349)
T 2www_A 244 LRKRSQVWKPKVIRISARSGEGISEMWDKMKD 275 (349)
T ss_dssp CC-----CCCEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCccccCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 1246899999999999999998874
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=6.1e-11 Score=102.00 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=57.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCC---ccEEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDG---EEYLL 97 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~---~~~~~ 97 (257)
.+|+|+|.+|+|||||+|+|++.... ....++.|+++....+.+.+. +.. ....+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~--------------v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i 68 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE--------------AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTM 68 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc--------------ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEE
Confidence 47999999999999999999874311 111223344444444443220 000 01479
Q ss_pred EEeCCCCCcccHH-------HHHHhhhhcceEEEEEecCc
Q psy12244 98 NLIDTPGHVDFSN-------EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 98 ~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvd~~~ 130 (257)
.||||||+.++.. .....++.+|++++|+|+.+
T Consensus 69 ~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 69 EFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 9999999987642 23456789999999999986
No 194
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=100.94 Aligned_cols=90 Identities=20% Similarity=0.239 Sum_probs=52.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc--------C---CccE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL--------D---GEEY 95 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--------~---~~~~ 95 (257)
...+|+|+|.+|+|||||+|+|++... .....++.|+++....+.+.+.. . ....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--------------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~ 86 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--------------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPA 86 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc--------------cccCCCccccCceeEEEEECCccceeeccccCccccccc
Confidence 346799999999999999999975321 11223445666555555443200 0 0024
Q ss_pred EEEEeCCCCCcccHH-------HHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVDFSN-------EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.||||||+..+.. .+...++.+|++++|+|+.+
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 699999999987544 45678899999999999986
No 195
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.07 E-value=2.5e-10 Score=103.77 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=30.4
Q ss_pred EEEEeCCCCCcc-----------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD-----------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.||||||+.+ |...+..++..+|++|+|+|++.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 588999999976 66777788899999999999975
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=1.7e-10 Score=97.34 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-..+|+++|+.|+|||||+++|+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999864
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.03 E-value=5.2e-10 Score=96.66 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=56.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc----------cCC-----c
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI----------LDG-----E 93 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----------~~~-----~ 93 (257)
++|+|+|.+|+|||||+|+|++....+... +..|+..+.....+... +.. .
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~--------------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~ 67 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANY--------------PFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVV 67 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSC--------------CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCC--------------CCceeccceeeEecChHHHHHHHHHhcccccccccC
Confidence 569999999999999999998753211110 11122222222222100 000 1
Q ss_pred cEEEEEeCCCCCccc-------HHHHHHhhhhcceEEEEEecCc
Q psy12244 94 EYLLNLIDTPGHVDF-------SNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 94 ~~~~~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
...+.||||||+..+ .......++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 257999999998764 3455667899999999999986
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.94 E-value=8.1e-10 Score=94.58 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=50.1
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
+.+.|+||||..+-.. .....+|++++|+|+.. +|+.... .....+.+...+.
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~ 224 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALH 224 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHH
Confidence 6899999999865322 22467899999998642 3432110 0111233333221
Q ss_pred C-C------ccceEEecccccccccccccccCC
Q psy12244 151 I-D------KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~-~------~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. . ..+++++||++|.|+++|++.|..
T Consensus 225 l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 225 ILTPPSATWTPPVVTISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp TBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred hccccccCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 1 1 246899999999999999988874
No 199
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.90 E-value=1.5e-09 Score=93.26 Aligned_cols=36 Identities=6% Similarity=0.211 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.+|||+|++.|...+..+++.++++|+|+|.++
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGG
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcc
Confidence 789999999999999999999999999999999875
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.87 E-value=8.7e-09 Score=84.65 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=22.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++++|..|+|||||++.|...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35677899999999999999999743
No 201
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.84 E-value=8.8e-09 Score=89.54 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=60.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCCc---cE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDGE---EY 95 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~~---~~ 95 (257)
+..+|+|+|++|+|||||+|+|++....... ..++.|+++....+.+.+. .... ..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-------------~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~ 85 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-------------NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPA 85 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-------------CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccc-------------CCCceeecceeeeeeeCCcchhhhhhhcccccccCc
Confidence 3467999999999999999999874321111 1233455555555544320 0000 13
Q ss_pred EEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+||+||... +.......++.+|++++|+|+..
T Consensus 86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 688999999643 44456777889999999999976
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.78 E-value=8.4e-10 Score=103.39 Aligned_cols=62 Identities=42% Similarity=0.585 Sum_probs=37.1
Q ss_pred cchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 196 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 196 ~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.|+.++||++++||+++||+|+.|++++.+|.+.+.|. .+++|++++|++|||||+++.++|
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~ 73 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEE
Confidence 35678999999999999999999999999998776554 679999999999999999998764
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.77 E-value=3.8e-09 Score=89.67 Aligned_cols=35 Identities=9% Similarity=0.282 Sum_probs=33.2
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
..+.+|||+|++.|...+..+++.++++|+|+|.+
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence 78999999999999999999999999999999776
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=1.2e-08 Score=89.44 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+|+|+|++|+|||||+++|++.
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCC
Confidence 467899999999999999999753
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.74 E-value=4.3e-09 Score=94.34 Aligned_cols=150 Identities=12% Similarity=0.145 Sum_probs=76.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCc------cccCCC--cccccchHH-HhhhCceEeceeeEEE-----eecc--
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGT------VLSSGS--SQVLDSLQV-EQERGITVKAQTASLR-----YTSI-- 89 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~------~~~~~~--~~~~d~~~~-e~~~g~t~~~~~~~~~-----~~~~-- 89 (257)
.++++|+++|++|+|||||+++|...... +...+. ....+.+.. ....++.+-....... ...+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999843211 111110 000111111 1122232111000000 0000
Q ss_pred cCCccEEEEEeCCCCCcc----cHHHHHHh--hhhcceEEEEEecCc------------------------cCCCCCCHH
Q psy12244 90 LDGEEYLLNLIDTPGHVD----FSNEVTRS--LAACQGVVLLIDANQ------------------------VDLKNANPE 139 (257)
Q Consensus 90 ~~~~~~~~~liDtpG~~~----~~~~~~~~--~~~aD~~ilVvd~~~------------------------~D~~~~~~~ 139 (257)
.....+.+.||||||... +....... +..+|.+++|+|+.. +|... ...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~-~~g 257 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHA-KGG 257 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCC-CCT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCcccc-chH
Confidence 000236899999999864 22222222 236899999999976 34321 112
Q ss_pred HHHHHHHHHhCCC---------------ccceEEeccccccc-ccccccccCCC
Q psy12244 140 ACEEQLQTLFNID---------------KKSVLRIWHRRCFS-CADCHRSLDST 177 (257)
Q Consensus 140 ~~~~~~~~~~~~~---------------~~~~i~iSa~~g~g-i~~l~~~i~~~ 177 (257)
.... +...++.+ ..|.+++|+..|.| +++|++.+...
T Consensus 258 ~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 GALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 2222 22222221 12346789999999 99999888754
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.73 E-value=1.3e-08 Score=81.67 Aligned_cols=27 Identities=19% Similarity=0.462 Sum_probs=23.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.+.++|+++|.+|+|||||+++|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356889999999999999999998753
No 207
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.73 E-value=9.9e-10 Score=99.81 Aligned_cols=60 Identities=40% Similarity=0.642 Sum_probs=38.4
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+.||++++||+++||+|+.+++++.+|.+.+.|. .+++|++++|++|||||+++.++|
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~ 95 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF 95 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE
Confidence 456899999999999999999999999998876443 478999999999999999998864
No 208
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.70 E-value=5.4e-09 Score=90.56 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|.+|+|||||+|+|++....... .......+|.|.+... +.+. ..+.++||||..+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~--------~~~~~~~~gtT~~~~~--~~~~-------~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGN--------VITTSYFPGTTLDMIE--IPLE-------SGATLYDTPGIINH 225 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTC--------CCEEEECTTSSCEEEE--EECS-------TTCEEEECCSCCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcc--------ceeecCCCCeEEeeEE--EEeC-------CCeEEEeCCCcCcH
Confidence 57999999999999999999875210000 0001123344444222 2222 13789999997542
Q ss_pred H-------HHHHHhh---hhcceEEEEEecCc--------------------------cCCCCC-CHHHHHHHHHHHhCC
Q psy12244 109 S-------NEVTRSL---AACQGVVLLIDANQ--------------------------VDLKNA-NPEACEEQLQTLFNI 151 (257)
Q Consensus 109 ~-------~~~~~~~---~~aD~~ilVvd~~~--------------------------~D~~~~-~~~~~~~~~~~~~~~ 151 (257)
. ......+ ...|.+++++++.. +|.... ..+...+.+++.++.
T Consensus 226 ~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 226 HQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp SSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 1 1122222 56789999999943 333211 245556666666653
Q ss_pred CccceEEeccccccccccccc
Q psy12244 152 DKKSVLRIWHRRCFSCADCHR 172 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~ 172 (257)
.+.|.++...+++.++..
T Consensus 306 ---~l~p~~~~~~~~~~~l~~ 323 (369)
T 3ec1_A 306 ---LLSPPSKRYAAEFPPLVP 323 (369)
T ss_dssp ---TBCSSCGGGTTTCCCEEE
T ss_pred ---ccCCCCchhhhhccCcEE
Confidence 366777776666665543
No 209
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.66 E-value=3.8e-08 Score=83.90 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
..+.+|||+|++.|...+..+++.++++|+|+|.+
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence 78999999999999999999999999999999998
No 210
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.63 E-value=5.7e-09 Score=87.94 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=74.5
Q ss_pred EEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHH
Q psy12244 96 LLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQT 147 (257)
Q Consensus 96 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~ 147 (257)
.+.+||| +++|...+..+++.+|++|+|+|+++ +|+.+....+..+++.+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~ 141 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEE 141 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHH
Confidence 6789999 88888878889999999999999986 55533111011223333
Q ss_pred HhCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
.++.. .+++++||++|.|++++++.+.. ..++++|..++||+|+...+...
T Consensus 142 ~~~~~-~~~~~~SAktg~gv~~lf~~l~g-------------------------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 142 IYSGL-YPIVKTSAKTGMGIEELKEYLKG-------------------------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHTTT-SCEEECCTTTCTTHHHHHHHHSS-------------------------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHhhh-CcEEEEECCCCcCHHHHHHHhcC-------------------------CeEEEECCCCCcHHHHHHHhccc
Confidence 34322 57999999999999999876551 23678999999999999998653
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.62 E-value=1.8e-08 Score=87.24 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+|+|++........ .......+|.|..... +.+.. .+.++||||..+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~-------~~~~~~~~gtT~~~~~--~~~~~-------~~~liDtPG~~~~ 224 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETEN-------VITTSHFPGTTLDLID--IPLDE-------ESSLYDTPGIINH 224 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSS-------CCEEECCC----CEEE--EESSS-------SCEEEECCCBCCT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccc-------ceecCCCCCeecceEE--EEecC-------CeEEEeCCCcCcH
Confidence 579999999999999999998763211000 0001122344443221 22221 2789999998542
Q ss_pred -------HHHHHHh---hhhcceEEEEEecCc--------------------------cCCCCC-CHHHHHHHHHHHhCC
Q psy12244 109 -------SNEVTRS---LAACQGVVLLIDANQ--------------------------VDLKNA-NPEACEEQLQTLFNI 151 (257)
Q Consensus 109 -------~~~~~~~---~~~aD~~ilVvd~~~--------------------------~D~~~~-~~~~~~~~~~~~~~~ 151 (257)
....... ....+.+++++++.. +|.... ..+...+.+++.++.
T Consensus 225 ~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 225 HQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp TSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred HHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCC
Confidence 1222222 255788899998843 444221 245666667777664
Q ss_pred CccceEEecccccccccccccc
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRS 173 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~ 173 (257)
.+.|.++.+++++.++...
T Consensus 305 ---~l~p~~~~~~~~~~~l~~~ 323 (368)
T 3h2y_A 305 ---LLSPPTPEELENMPELVKY 323 (368)
T ss_dssp ---TBCSSCHHHHHTSCCEEEE
T ss_pred ---ccCCCchhhHhhccCcEEE
Confidence 3677788777777766543
No 212
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.51 E-value=6.8e-08 Score=80.52 Aligned_cols=59 Identities=34% Similarity=0.354 Sum_probs=34.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+|+|++..... ....+|.|..... +.. + ..+.++||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~-------------~~~~~g~T~~~~~--~~~-~------~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAK-------------TGDRPGITTSQQW--VKV-G------KELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------------------CC--EEE-T------TTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceee-------------cCCCCCeeeeeEE--EEe-C------CCEEEEECcCcC
Confidence 45689999999999999999997643222 1223455554432 222 1 257899999985
Q ss_pred c
Q psy12244 107 D 107 (257)
Q Consensus 107 ~ 107 (257)
.
T Consensus 177 ~ 177 (282)
T 1puj_A 177 W 177 (282)
T ss_dssp C
T ss_pred C
Confidence 4
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.43 E-value=1.9e-07 Score=85.14 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.+...|+|+|.+|+|||||+|+|++..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 466789999999999999999997643
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.37 E-value=2.3e-07 Score=77.29 Aligned_cols=117 Identities=23% Similarity=0.141 Sum_probs=71.8
Q ss_pred EeCCCCCc-ccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 99 LIDTPGHV-DFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 99 liDtpG~~-~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
+=+.|||. ...+++...+..+|+++.|+|+.. +|+.+ .+..+...+++....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~---~~~~~~~~~~~~~~g 79 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKAD---AAVTQQWKEHFENQG 79 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSC---HHHHHHHHHHHHTTT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCC---HHHHHHHHHHHHhcC
Confidence 34579997 467788889999999999999987 56543 122233333332223
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++||++|.|+++|++.+....-........+.. ..+..+++++|..+.||+++.+.+....
T Consensus 80 ~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~-------~~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 80 IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGV-------KPRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTC-------CCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCC-------CCCCceEEEEecCCCchHHHHHHHhcCc
Confidence 4689999999999999888765321000000000000 0112468899999999999999997644
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.35 E-value=3.4e-07 Score=79.21 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=73.4
Q ss_pred EEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCC--HHHHHHHHHH---
Q psy12244 97 LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNAN--PEACEEQLQT--- 147 (257)
Q Consensus 97 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~--~~~~~~~~~~--- 147 (257)
+.-++++ +++|..........++++++|+|+.+ +|+.+.. .+...+.+..
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 3344544 77888877777789999999999998 7775432 2333333333
Q ss_pred HhCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
..+....+++++||++|.|+++|++.+.... ..+.+.++|..+.||+++.+.++..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~---------------------~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR---------------------EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH---------------------TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc---------------------ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 2354334689999999999999998886321 1146889999999999999999876
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.30 E-value=7e-07 Score=77.19 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=73.7
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCC--HHHHHHHH---HHHhCCCcc
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNAN--PEACEEQL---QTLFNIDKK 154 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~--~~~~~~~~---~~~~~~~~~ 154 (257)
..++|........+.+|++++|+|+.+ +|+.+.. .++..+.+ .+..+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPE 134 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCS
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcc
Confidence 346788877777888889999999998 7774432 22333332 233455444
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++++||++|.|+++|++.|.... ....+.++|..+.||+++.+.++...
T Consensus 135 ~v~~iSA~~g~gi~~L~~~l~~~~---------------------~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 135 DVFLISAAKGQGIAELADAIEYYR---------------------GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH---------------------TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCcCHHHHHhhhhhhc---------------------ccceEEEecCCCCChhHHHHHHHhhh
Confidence 689999999999999998886321 11458899999999999999998864
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.27 E-value=2.4e-07 Score=76.34 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=34.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+++++|.+|+|||||+|+|++..... .....|.|.... .+... ..+.+|||||+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-------------~~~~~g~T~~~~--~~~~~-------~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-------------VGAQPGITKGIQ--WFSLE-------NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------------------CCSC--EEECT-------TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-------------cCCCCCCccceE--EEEeC-------CCEEEEECCCccc
Confidence 579999999999999999997643221 111234444322 11111 3578999999875
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.16 E-value=3.1e-06 Score=74.44 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++..|+++|.+|+||||++..|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 219
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.10 E-value=7.5e-07 Score=76.75 Aligned_cols=36 Identities=8% Similarity=0.269 Sum_probs=27.3
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.+|||+|++.|...+..+++.++++|+|+|.++
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcc
Confidence 789999999999999999999999999999999874
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.09 E-value=4.8e-07 Score=76.16 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=60.4
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
++++.......++.+|++++|+|+++ +|+.+.......++..+.+.....++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~ 145 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDV 145 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeE
Confidence 33333333346677777777777764 66643210011223333221112469
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++||++|.|+++|++.+.. ..++++|..++||+|+...+. ..
T Consensus 146 ~~~SA~~g~gi~~L~~~l~G-------------------------~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 146 LKVSAKTGEGIDELVDYLEG-------------------------FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EECCTTTCTTHHHHHHHTTT-------------------------CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEECCCCCCHHHHHhhccC-------------------------cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 99999999999999876541 236789999999999999998 53
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.00 E-value=4e-05 Score=67.00 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++|+|++|+|||||+|.|++
T Consensus 70 ~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999976
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.99 E-value=1.3e-05 Score=70.50 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++..|+++|++|+||||++..|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.97 E-value=3.2e-05 Score=67.69 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...++++|+|++|+|||||+|.|++.
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34567999999999999999999764
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.95 E-value=8.2e-06 Score=67.13 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=64.2
Q ss_pred CCCcc-cHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 103 PGHVD-FSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 103 pG~~~-~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
|||.. ..+.+...+..+|+++.|+|+.. +|+.+ ....+...+.+.....++ ++
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~~---~~~~~~~~~~~~~~g~~v-~i 80 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIAD---EKTTKKWVEFFKKQGKRV-IT 80 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGSC---HHHHHHHHHHHHHTTCCE-EE
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCCC---HHHHHHHHHHHHHcCCeE-EE
Confidence 88865 44677888999999999999986 23221 112222222231112457 99
Q ss_pred cccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 160 WHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
||++|.|+++|++.+.... ..+.++|..+.||+++.+++....
T Consensus 81 Sa~~~~gi~~L~~~l~~~~-----------------------~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 81 THKGEPRKVLLKKLSFDRL-----------------------ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CCTTSCHHHHHHHHCCCTT-----------------------CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred ECCCCcCHHHHHHHHHHhh-----------------------hheEEeCCCCCCHHHHHHHHhccc
Confidence 9999999999988776221 358899999999999999987543
No 225
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.89 E-value=6e-05 Score=66.47 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+...|+|+|++++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 346778999999999999999999875
No 226
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.74 E-value=2.3e-06 Score=73.48 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=32.9
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
....+.+|||+|+++|...+..+++.++++|+|+|.+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence 4578999999999999999999999999999999987
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.71 E-value=3.8e-05 Score=67.65 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++..|+++|++|+||||+++.|...
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999763
No 228
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.61 E-value=3.4e-05 Score=63.67 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.+++++|+.|+|||||+|.|++..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998754
No 229
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.59 E-value=2e-05 Score=72.08 Aligned_cols=58 Identities=64% Similarity=0.905 Sum_probs=29.2
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCC-CccccCChhhHhhhCceEeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g-~~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+.++++++||+++||+|+.+++++..|.+...+ ..+++|..+.|++||+||+++.+
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~ 61 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAV 61 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEE
Confidence 45578999999999999999999999888765432 36789999999999999986654
No 230
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.55 E-value=4.6e-05 Score=67.11 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+++.|+++|..|+||||++..|...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999998743
No 231
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.43 E-value=4.2e-05 Score=70.03 Aligned_cols=56 Identities=59% Similarity=0.943 Sum_probs=23.6
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcccCC-CccccCChhhHhhhCceEeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g-~~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
+.++++++||+++||+|+.+++++..|.+.... ..+++|..+.|++||+||++...
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~ 59 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSV 59 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEE
Confidence 468999999999999999999999888765432 36789999999999999987654
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.35 E-value=0.00018 Score=60.19 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|+.|+||||++..|...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999998653
No 233
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.26 E-value=0.00021 Score=63.06 Aligned_cols=57 Identities=37% Similarity=0.450 Sum_probs=47.1
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcccCC-----------------CccccCChhhHhhhCceEeeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-----------------SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g-----------------~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
...+++++|++++||+|+.+++++..|.+.... -.+++|..++|+++|+||..+..+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~ 89 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAY 89 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEE
Confidence 357899999999999999999999888764321 146899999999999999877654
No 234
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.26 E-value=0.00015 Score=67.75 Aligned_cols=58 Identities=41% Similarity=0.631 Sum_probs=48.9
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.++++++||+++||+|+.+++++..|.+...|. .+++|+.+.|++||+||.++..+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~ 69 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATT 69 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEE
Confidence 34688999999999999999999998887665442 57899999999999999887653
No 235
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.25 E-value=0.00041 Score=60.31 Aligned_cols=69 Identities=9% Similarity=0.272 Sum_probs=51.7
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCccCCC------CCCHHHHHHHHHHHhC---CCccceEEecccc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLK------NANPEACEEQLQTLFN---IDKKSVLRIWHRR 163 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D~~------~~~~~~~~~~~~~~~~---~~~~~~i~iSa~~ 163 (257)
..+.+|||+|++.|...+..+++.++++|||+|.++-|.. ...+++....+..... ....|++.+-.|.
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 7899999999999999999999999999999999984431 1225555555555443 3456677666654
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.16 E-value=0.0002 Score=60.15 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=44.6
Q ss_pred cCCCCCCHH-HHHHHHHHHhCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEee
Q psy12244 131 VDLKNANPE-ACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAH 209 (257)
Q Consensus 131 ~D~~~~~~~-~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 209 (257)
+|+.+.... +..+.+.+.+.....+++.+||++|.|+++|++.+. ...++++|.
T Consensus 127 ~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~-------------------------G~~~~lvG~ 181 (307)
T 1t9h_A 127 MDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQ-------------------------DKTTVFAGQ 181 (307)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGT-------------------------TSEEEEEES
T ss_pred CccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcC-------------------------CCEEEEECC
Confidence 777543210 123333333311123689999999999998765432 135789999
Q ss_pred ecccchhhHHHHHH
Q psy12244 210 VDHGKSTLADRLLE 223 (257)
Q Consensus 210 v~~Gk~~~~~~i~~ 223 (257)
.++||+|+.+.+..
T Consensus 182 sG~GKSTLln~L~g 195 (307)
T 1t9h_A 182 SGVGKSSLLNAISP 195 (307)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHhcc
Confidence 99999999999854
No 237
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.14 E-value=0.00016 Score=68.95 Aligned_cols=57 Identities=46% Similarity=0.725 Sum_probs=35.7
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--ccccCChhhHhhhCceEeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
.+.++++++||+++||+|+.++++...|.+.+.+. .+++|+.++|++||+||.++..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~ 75 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeecee
Confidence 34688999999999999999999999887765443 4688999999999999987654
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.12 E-value=0.0003 Score=55.10 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
++|..+.+.|+|+|++|+|||||+++|+...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4555566679999999999999999998754
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.09 E-value=0.00041 Score=58.61 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+++|..|+||||++..|...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988653
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.06 E-value=0.00083 Score=59.77 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=22.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++|+|..|+|||||++.|.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34567999999999999999998764
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.03 E-value=0.00018 Score=60.38 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++++|++|+|||||+|.|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4689999999999999999954
No 242
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.00 E-value=0.00029 Score=55.55 Aligned_cols=35 Identities=6% Similarity=0.130 Sum_probs=20.1
Q ss_pred EEEEeCCC------CCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTP------GHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtp------G~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
++..-.+| |+..++..|..++..+|++|||||+++
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD 137 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEA 137 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBT
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 34455555 788899999999999999999999986
No 243
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.85 E-value=0.00028 Score=63.75 Aligned_cols=58 Identities=29% Similarity=0.584 Sum_probs=29.7
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.++++++||+++||+|+.++++...|.+...|. .++.|+.++|++||+|+.++...
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~ 76 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQ 76 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEE
Confidence 45688999999999999999999987776643332 56889999999999999876543
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.84 E-value=0.00056 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|++|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.83 E-value=0.00066 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+++|+|+.|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00066 Score=52.15 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+|++|+|||||++.|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998743
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.79 E-value=0.0008 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|++|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999664
No 248
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.76 E-value=0.00017 Score=65.11 Aligned_cols=59 Identities=36% Similarity=0.600 Sum_probs=48.8
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+.++++++|+.++||+|+.+++++..|.+...|. .++.|+.+.|+++|+|+..+...
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~ 76 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQ 76 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEE
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEE
Confidence 445689999999999999999999988887754332 45789999999999999876653
No 249
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.71 E-value=0.001 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|+|+.|+|||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999764
No 250
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.68 E-value=0.00069 Score=63.18 Aligned_cols=58 Identities=40% Similarity=0.677 Sum_probs=29.4
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.++++++||+++||+|+.++++...|.+.+.|. .+++|+.+.|+++|+||.++..+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~ 71 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEE
Confidence 45688999999999999999999998887654432 57899999999999999887653
No 251
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.62 E-value=0.00076 Score=62.93 Aligned_cols=58 Identities=36% Similarity=0.657 Sum_probs=31.3
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCC----CccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g----~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.++++++|+.++||+|+.++++...|.+...+ ..++.|+.+.|+++|+|+.+....
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~ 69 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATT 69 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEE
Confidence 4568899999999999999999999888765433 257899999999999999887543
No 252
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.60 E-value=0.001 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|+.|+|||||++.|+...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998643
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.57 E-value=0.0016 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+|+|++|+|||||++.|...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999998653
No 254
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.001 Score=55.01 Aligned_cols=31 Identities=6% Similarity=0.183 Sum_probs=25.6
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCccC
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D 132 (257)
..|+..+...+..++..+|++|+|||+++-+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDre 224 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHK 224 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHh
Confidence 3578889999999999999999999998733
No 255
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.54 E-value=0.0016 Score=50.86 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+...|+|+|++|+|||||++.|....+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4457999999999999999999775543
No 256
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.53 E-value=0.0013 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+|+.|+|||||++.|.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999997754
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.53 E-value=0.0013 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+|++|+|||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998753
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.50 E-value=0.0032 Score=55.13 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|..|+||||++..|...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998653
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.50 E-value=0.0014 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-..++|+|++|+|||||++.|.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458999999999999999998754
No 260
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.48 E-value=0.00043 Score=61.63 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.....|+++|.+|+||||+..+|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999754
No 261
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.47 E-value=0.0015 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+|+.|+|||||++.|++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999998754
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.47 E-value=0.0019 Score=50.85 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=21.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
...|+|+|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998754
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.46 E-value=0.0018 Score=48.83 Aligned_cols=25 Identities=20% Similarity=-0.049 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+|+|.+|+||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999976544
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.45 E-value=0.0026 Score=48.31 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...|+++|++|+|||||.+.|....+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45799999999999999999976544
No 265
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.45 E-value=0.0009 Score=59.49 Aligned_cols=56 Identities=45% Similarity=0.545 Sum_probs=26.8
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
...+++++||+++||+|+.+++++..|.+.. .|. .+++|..++|+++|+||..+..
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~ 114 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA 114 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeE
Confidence 3468999999999999999999988776531 121 4578999999999999987643
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.42 E-value=0.0021 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++.++++|++|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
No 267
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.40 E-value=0.00081 Score=61.58 Aligned_cols=56 Identities=30% Similarity=0.544 Sum_probs=25.0
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-----ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..+.+... |. .+++|..++|+++|+|+......
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~ 249 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT 249 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE
Confidence 4679999999999999999999887765422 11 56899999999999999877543
No 268
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.39 E-value=0.0024 Score=48.73 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+|+||||+...|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999976544
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.37 E-value=0.0019 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHhc
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~ 52 (257)
|+|+|++|+||+||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998653
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.37 E-value=0.0021 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.+.|+++|++|||||||.++|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999998754
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.35 E-value=0.0019 Score=55.23 Aligned_cols=45 Identities=22% Similarity=0.118 Sum_probs=36.2
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
.+++++||.+|.|+++|...+. ...++++|..++||+|+.+.+..
T Consensus 193 ~~v~~~Sa~~~~gl~~L~~~~~-------------------------G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 193 YRVLMVSSHTQDGLKPLEEALT-------------------------GRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp CCEEECBTTTTBTHHHHHHHHT-------------------------TSEEEEECCTTSSHHHHHHHHHC
T ss_pred CcEEEEecCCCcCHHHHHHhcC-------------------------CCEEEEECCCCccHHHHHHHHhc
Confidence 4589999999999988765321 12478999999999999999975
No 272
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.34 E-value=0.0035 Score=48.77 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..+++.|+|+|.+|+||||+...|....+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45667899999999999999999976554
No 273
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.33 E-value=0.0024 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..|+|+|++|+|||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.33 E-value=0.0023 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+|+|++|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976544
No 275
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.30 E-value=0.0028 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.+.|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999753
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.30 E-value=0.0025 Score=49.64 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|+|+|.+|+|||||.+.|....+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999977544
No 277
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.28 E-value=0.0027 Score=51.21 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+..|+|+|++|+|||||++.|....+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999854443
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.28 E-value=0.002 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.6
Q ss_pred eeEEEEecCCCChHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRL 48 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l 48 (257)
-.++++|++|+|||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999964
No 279
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.28 E-value=0.0018 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.1
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|++|+|||||+|.|++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999999753
No 280
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.26 E-value=0.0012 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++|+|++|+|||||++.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.26 E-value=0.0029 Score=49.27 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=23.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+...|+++|.+|+||||+...|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999976544
No 282
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.25 E-value=0.0032 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999765
No 283
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.24 E-value=0.0035 Score=48.17 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.++|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999775
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.24 E-value=0.0029 Score=48.22 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=20.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+++.++++|.+|+|||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 285
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.19 E-value=0.012 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+...|+|+|..++|||+|+|.|+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHH
Confidence 45677899999999999999997764
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.16 E-value=0.0033 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+++|.+|+||||+.+.| ...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36899999999999999999 5444
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.14 E-value=0.0033 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.|+|+|.+|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999976
No 288
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.14 E-value=0.0046 Score=49.07 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=26.5
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
|......+++.|.|+|++||||+|....|....+..
T Consensus 21 ~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 21 MTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp ---CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred ccchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 344444567788999999999999999998765543
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.13 E-value=0.004 Score=47.74 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.|+|.|.+|+||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999997643
No 290
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.13 E-value=0.0021 Score=51.73 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999854
No 291
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.12 E-value=0.0034 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-.++++|+.|+|||||++.|.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999997754
No 292
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.12 E-value=0.0051 Score=47.12 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|+++|.+|+||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976544
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.12 E-value=0.0032 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
-.++|+|++|+|||||++.|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999998763
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.09 E-value=0.0038 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 295
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.07 E-value=0.0032 Score=52.64 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.4
Q ss_pred eeEEEEecCCCChHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~ 49 (257)
..++++|++|+|||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 296
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.07 E-value=0.0025 Score=50.81 Aligned_cols=21 Identities=43% Similarity=0.235 Sum_probs=18.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999854
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.06 E-value=0.0034 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|++|+|||||++.|++.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 36899999999999999999764
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.05 E-value=0.0049 Score=47.34 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...|+++|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999976544
No 299
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.04 E-value=0.00098 Score=58.69 Aligned_cols=55 Identities=44% Similarity=0.617 Sum_probs=34.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-----ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+++.+++++..|.+... |. .+++|..++|+++|+||..+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~ 77 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM 77 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE
Confidence 4689999999999999999999986655321 11 2568999999999999987654
No 300
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.04 E-value=0.0041 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.3
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.03 E-value=0.0035 Score=49.43 Aligned_cols=22 Identities=18% Similarity=-0.025 Sum_probs=20.1
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999774
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.02 E-value=0.0048 Score=48.05 Aligned_cols=26 Identities=31% Similarity=0.185 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+...|+|+|++|+|||||.+.|....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999986643
No 303
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.01 E-value=0.0043 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+|+|++|+||||+.+.|....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976543
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.98 E-value=0.0033 Score=50.73 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.++|+|+.|+|||||++.|.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999965
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.95 E-value=0.004 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|+.|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999998764
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.94 E-value=0.0049 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|+|++|+|||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34557999999999999999998663
No 307
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.94 E-value=0.0048 Score=47.17 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=22.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++|+++|.+|+||||+...|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976544
No 308
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.93 E-value=0.0032 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999954
No 309
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.91 E-value=0.0056 Score=49.30 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+...|+|+|+.|+|||||++.|.+..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445799999999999999999977544
No 310
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.90 E-value=0.0056 Score=46.43 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999977543
No 311
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.88 E-value=0.0058 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++..|+|+|++|+|||||++.|...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998653
No 312
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.88 E-value=0.0057 Score=48.58 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+++.|+|+|.+|+||||+.+.|....+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999976554
No 313
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.87 E-value=0.0055 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+++.++|+|..|+|||||++.|++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999864
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.87 E-value=0.0067 Score=50.24 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++..|+++|++|+|||||..+|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445679999999999999999997654
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.86 E-value=0.0063 Score=46.46 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...|+++|.+||||||+.+.|....+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976444
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.86 E-value=0.006 Score=50.68 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=21.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++..|+|+|++|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999865
No 317
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.86 E-value=0.0035 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999955
No 318
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.86 E-value=0.0048 Score=47.04 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...++++|++|+|||||+.++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998653
No 319
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.85 E-value=0.0033 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999954
No 320
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.85 E-value=0.0034 Score=49.76 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999954
No 321
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.85 E-value=0.0056 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+|+|.+|+|||||.+.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999653
No 322
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.85 E-value=0.0036 Score=50.08 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999954
No 323
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.85 E-value=0.0036 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999955
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.84 E-value=0.0055 Score=47.42 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999977544
No 325
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.84 E-value=0.011 Score=45.90 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+.+||||+... ......+..+|.+++++..+.
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~ 109 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSP 109 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCH
Confidence 37889999998763 455677888999999997764
No 326
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.84 E-value=0.0045 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999763
No 327
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.83 E-value=0.0034 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999954
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.83 E-value=0.0051 Score=47.98 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.|+|+|.+|+||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999965
No 329
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.83 E-value=0.0033 Score=51.59 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999954
No 330
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.83 E-value=0.0044 Score=51.72 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++++|++|+|||||+|.|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 35899999999999999999653
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.83 E-value=0.006 Score=46.77 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|+++|.+|+||||+...|....+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999876544
No 332
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.82 E-value=0.0036 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=15.5
Q ss_pred eeEEEEecCCCChHHHHHHHH-Hh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL-EM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~-~~ 51 (257)
..++|+|++|+|||||++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999997 54
No 333
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.82 E-value=0.0035 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999954
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.81 E-value=0.0064 Score=46.77 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+|+||||+...|....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999976544
No 335
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.81 E-value=0.0066 Score=48.94 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=23.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+++.|+|+|.+||||||+...|....+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999976544
No 336
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.81 E-value=0.0073 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+...|+|+|.+|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
No 337
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.81 E-value=0.0053 Score=46.58 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999976544
No 338
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.78 E-value=0.0063 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+|+|+|.+||||||+.+.|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999765443
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.78 E-value=0.006 Score=48.25 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+++.|+|+|.+|+||||+.+.|....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999977554
No 340
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.77 E-value=0.0071 Score=46.96 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=23.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++..|+|+|.+|+||||+.+.|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999976544
No 341
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.76 E-value=0.0041 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999653
No 342
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.75 E-value=0.0063 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|+.|+|||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999998754
No 343
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.75 E-value=0.005 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999763
No 344
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.74 E-value=0.007 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976554
No 345
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.73 E-value=0.0043 Score=50.03 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999954
No 346
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=95.73 E-value=0.0023 Score=56.31 Aligned_cols=55 Identities=36% Similarity=0.564 Sum_probs=36.6
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-------ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-------SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-------~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+|+.++++...+.+... +. .+.+|..++|++||+||..+..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 3679999999999999999999877644321 11 2357888999999999986644
No 347
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.71 E-value=0.0061 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||+..|+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 348
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.71 E-value=0.0067 Score=47.86 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+|+||||+...|....+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999976544
No 349
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.71 E-value=0.0044 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=18.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 478999999999999999854
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.70 E-value=0.0076 Score=50.42 Aligned_cols=26 Identities=35% Similarity=0.208 Sum_probs=22.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|+|+.|+|||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999763
No 351
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.69 E-value=0.0045 Score=50.90 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999954
No 352
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.68 E-value=0.0071 Score=46.25 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.|+|.|.+|+||||+.+.|....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999997643
No 353
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.67 E-value=0.0046 Score=50.38 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999954
No 354
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.67 E-value=0.0051 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|++|+|||||++.|+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999763
No 355
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.67 E-value=0.0047 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 479999999999999999955
No 356
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.67 E-value=0.008 Score=48.62 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=23.9
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
..++..|+|.|.+|+||||+.+.|....+.
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999999999999999999775553
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.64 E-value=0.0079 Score=48.75 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...|+|+|++|+|||||.+.|....+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999975444
No 358
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.64 E-value=0.0065 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.0
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|++|+|||||++.|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999998763
No 359
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.63 E-value=0.0076 Score=55.93 Aligned_cols=57 Identities=30% Similarity=0.393 Sum_probs=46.5
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
.+.++++++|+.++||+|+.++++...+.+...|. ..+.|+.+.|+++|+|+.....
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~ 67 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVA 67 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecce
Confidence 34578999999999999999999988776544443 4678999999999999977654
No 360
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.63 E-value=0.0083 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|.|.+|+||||+.+.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999976443
No 361
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.63 E-value=0.0059 Score=48.87 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~ 49 (257)
.++|+|+.|+|||||++.|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999999887
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.63 E-value=0.0077 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|++|+|||||..+|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999977554
No 363
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.62 E-value=0.0049 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999954
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.62 E-value=0.0092 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+.|+|.|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999654
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.59 E-value=0.0063 Score=46.30 Aligned_cols=26 Identities=23% Similarity=0.059 Sum_probs=18.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|++.|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999976544
No 366
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.59 E-value=0.0066 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++++|++|+|||||++.+...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 367
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.57 E-value=0.0053 Score=50.31 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999854
No 368
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.55 E-value=0.0053 Score=49.91 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999954
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.54 E-value=0.0081 Score=46.32 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+.|+++|.+|+||||+...|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976544
No 370
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.52 E-value=0.011 Score=49.29 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++++|+.|+|||||++.|.+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999764
No 371
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.50 E-value=0.0034 Score=52.57 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|++
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 579999999999999999854
No 372
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.49 E-value=0.012 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|.+|+||||+...|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998654
No 373
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.49 E-value=0.0081 Score=48.65 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=23.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++..|+++|.+|+||||+...|....+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4457899999999999999999977543
No 374
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.47 E-value=0.0044 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+++|+|+.|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999997754
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.47 E-value=0.0094 Score=46.17 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|+|+|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 376
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.46 E-value=0.0055 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|++|+|||||++.|++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999653
No 377
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.46 E-value=0.0029 Score=56.10 Aligned_cols=55 Identities=40% Similarity=0.523 Sum_probs=42.8
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+|+.+++++..+.+.. .|. .+++|..+.|+++|+||..+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~ 78 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW 78 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE
Confidence 367899999999999999999987654421 122 2467889999999999876644
No 378
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.46 E-value=0.0079 Score=51.77 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
--.++|+|++|+|||||++.|+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999763
No 379
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.40 E-value=0.0066 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999553
No 380
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.38 E-value=0.011 Score=49.95 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++++|+.|+|||||++.|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998764
No 381
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.38 E-value=0.0071 Score=50.21 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999954
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.38 E-value=0.0091 Score=44.94 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976544
No 383
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.38 E-value=0.0074 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 478999999999999999965
No 384
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.38 E-value=0.0079 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4799999999999999999653
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.37 E-value=0.011 Score=46.55 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+|+||||+.+.|....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999976544
No 386
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.35 E-value=0.0093 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++.|+++|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.35 E-value=0.021 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+++.|+|+|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999863
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.34 E-value=0.01 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 389
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.32 E-value=0.005 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 390
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.30 E-value=0.011 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+|+|.|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976444
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.30 E-value=0.012 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976544
No 392
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.27 E-value=0.011 Score=49.94 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+|+|++++|||||...|....+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345799999999999999999977554
No 393
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.26 E-value=0.018 Score=50.26 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.6
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.....+..|+++|.+|+||||+..+|....+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3344567799999999999999999976543
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.26 E-value=0.01 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999976544
No 395
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.20 E-value=0.0091 Score=50.99 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999653
No 396
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.19 E-value=0.012 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+|+|+.|+|||||+.+|....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997643
No 397
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.17 E-value=0.011 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.068 Sum_probs=20.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|++|+|||||++.|++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998743
No 398
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.17 E-value=0.016 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++++|+.|+|||||++.|.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34567999999999999999999764
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.17 E-value=0.013 Score=46.62 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=23.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++++|+++|.+|+||||+...|....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999976544
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.15 E-value=0.0086 Score=53.75 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+++|+|++|||||||+++|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999653
No 401
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.14 E-value=0.0097 Score=50.93 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999653
No 402
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.13 E-value=0.0098 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4799999999999999999653
No 403
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.12 E-value=0.015 Score=43.94 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
....+.+.|++|+|||+|+.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998653
No 404
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.11 E-value=0.014 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 405
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.11 E-value=0.014 Score=45.81 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
+|+++|+|||||+|+...|....+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 58999999999999999998766543
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.10 E-value=0.01 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999999653
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.10 E-value=0.014 Score=46.84 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++..|+|.|++|+||||+.+.|....+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999976544
No 408
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.08 E-value=0.014 Score=43.75 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+.+|+|.|.+|+||||+...|....+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999876544
No 409
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.08 E-value=0.0063 Score=55.86 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.|+|+|+.|+|||||++.|.+.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 45999999999999999999764
No 410
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.06 E-value=0.01 Score=50.99 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999999653
No 411
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.03 E-value=0.011 Score=50.87 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999653
No 412
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.01 E-value=0.017 Score=43.92 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=20.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|.+|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998653
No 413
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.00 E-value=0.012 Score=46.97 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|.|..|+|||||++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998765
No 414
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.95 E-value=0.015 Score=44.63 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 415
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.91 E-value=0.013 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999763
No 416
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.91 E-value=0.076 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...+.+.|++|+|||+|+.++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999999663
No 417
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.90 E-value=0.01 Score=52.87 Aligned_cols=56 Identities=39% Similarity=0.522 Sum_probs=33.6
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++|++++||+|+.+++++..+.+.. .|. .+++|....|+++|+|+......
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~ 105 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH 105 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE
Confidence 367899999999999999999998665532 121 46789999999999999776543
No 418
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.85 E-value=0.018 Score=45.62 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.|+++|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976544
No 419
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.85 E-value=0.018 Score=46.41 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.9
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.83 E-value=0.016 Score=46.96 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
-.+|+|+|.+|+||||+.+.|....+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999976444
No 421
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.83 E-value=0.017 Score=47.39 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++++|++|+|||||++++.+..
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHc
Confidence 49999999999999999997643
No 422
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.82 E-value=0.023 Score=47.45 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|+|+|++++|||||...|....+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45688999999999999999987654
No 423
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.78 E-value=0.036 Score=46.53 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|.|.|++|+|||+|+.++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999653
No 424
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.78 E-value=0.022 Score=44.54 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=21.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|.+|+||||+...|...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998653
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.73 E-value=0.023 Score=48.11 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|+++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 426
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.016 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|+.|+|||||++.|++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999999764
No 427
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.73 E-value=0.017 Score=45.41 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||+..|+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 428
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.058 Score=47.33 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++-|.+.|++|+|||+|..++....+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 456799999999999999999976443
No 429
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.69 E-value=0.0092 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4799999999999999999653
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.61 E-value=0.029 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 431
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.60 E-value=0.017 Score=50.13 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=40.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhh---CCcccCCCccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMT---GTVLSSGSSQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~---g~~~~~g~~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+|+.+++.... |........+.+|..+.|+++|+|+..+..
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~ 68 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 68 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeee
Confidence 3679999999999999999998742 210011123368999999999999876543
No 432
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.58 E-value=0.019 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++++|++|+|||||++.+.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999999999998754
No 433
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.53 E-value=0.021 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|++|+|||||+..|...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999998653
No 434
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.52 E-value=0.031 Score=44.56 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+...|++.|.+|+||||+++.|.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 446799999999999999999977543
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.52 E-value=0.025 Score=45.08 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=23.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+...|+|+|.+|+||||+.+.|....+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455799999999999999999976444
No 436
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.51 E-value=0.032 Score=43.26 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
....|+|+|.+||||||+.+.|....+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999976534
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.48 E-value=0.021 Score=42.29 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.+|+|+.|+|||||+.+|..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999864
No 438
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.46 E-value=0.023 Score=46.52 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.9
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999764
No 439
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.46 E-value=0.026 Score=43.68 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+.+.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998653
No 440
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.42 E-value=0.02 Score=43.19 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
....+.+.|++|+|||+|+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998653
No 441
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.42 E-value=0.009 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4799999999999999999653
No 442
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.40 E-value=0.028 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++.|.++|++|+|||||+.++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999653
No 443
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.36 E-value=0.12 Score=43.25 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.+.|++|+|||+|..++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467999999999999999999664
No 444
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.32 E-value=0.026 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|+.|+|||||++.|.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 445
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.29 E-value=0.023 Score=48.64 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=18.2
Q ss_pred EEEEecCCCChHHHHHHHHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~ 50 (257)
.+|+|+.|+|||||+++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999874
No 446
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.29 E-value=0.028 Score=44.29 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...+.|.|++|+|||+|+.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998653
No 447
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.28 E-value=0.019 Score=47.65 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=18.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+.|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998764
No 448
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.26 E-value=0.038 Score=46.12 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+++|++|+||||++..|...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 45567999999999999999998653
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.23 E-value=0.027 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=19.4
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||+..|+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 450
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.21 E-value=0.03 Score=46.50 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+...|+++|+.|+||||++..|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 451
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.19 E-value=0.027 Score=50.09 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-.++|+|+.|+|||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999997643
No 452
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.16 E-value=0.15 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.|.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999654
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.11 E-value=0.032 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..|+++|.+|+||||+.++|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 454
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.09 E-value=0.037 Score=46.36 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|++++|||||...|....+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4689999999999999999976543
No 455
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.09 E-value=0.022 Score=51.97 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999955
No 456
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.08 E-value=0.029 Score=44.52 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.9
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|++|+|||||+..|+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999873
No 457
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.06 E-value=0.024 Score=51.67 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.3
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999965
No 458
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.05 E-value=0.033 Score=47.98 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...++++|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999965
No 459
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.012 Score=54.01 Aligned_cols=55 Identities=40% Similarity=0.532 Sum_probs=43.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+|+.+++++..+.+.. .|. .++.|..+.|+++|+|+.....
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~ 238 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTS 238 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeE
Confidence 457999999999999999999987665432 122 5678899999999999876543
No 460
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.04 E-value=0.035 Score=42.94 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.|+|.|.+|+||||+...|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999976544
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.99 E-value=0.035 Score=43.35 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=21.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|++|+|||||...|...-.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999976433
No 462
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.97 E-value=0.027 Score=50.85 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=19.4
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999965
No 463
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.96 E-value=0.092 Score=44.67 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=21.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+.|.+.|++|+|||+|+.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999653
No 464
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.94 E-value=0.034 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|+.|+|||||++.|.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998754
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.93 E-value=0.043 Score=43.82 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
++.|++.|..|+||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999997654
No 466
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.83 E-value=0.022 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999955
No 467
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.12 Score=45.17 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=22.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++-|.+.|++|+|||+|..++....+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345699999999999999999976443
No 468
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.79 E-value=0.022 Score=46.23 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.+.|+|.|..|+||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999998654
No 469
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.78 E-value=0.024 Score=51.93 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999854
No 470
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.78 E-value=0.037 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.7
Q ss_pred CceeeEEEEecCCCChHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRL 48 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l 48 (257)
.+..+|.++|.+++|||||+.+|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45779999999999999999986
No 471
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.75 E-value=0.076 Score=44.12 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..|.|.|++|+|||+|+.++..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999865
No 472
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.11 Score=45.54 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++-|.+.|++|+|||+|..++....+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999977543
No 473
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.71 E-value=0.18 Score=39.25 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=26.6
Q ss_pred cEEEEEeCCCCC-cccHHHHHHhhhhcceEEEEEecCc
Q psy12244 94 EYLLNLIDTPGH-VDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 94 ~~~~~liDtpG~-~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+.++|||+. ... .....+..+|.+|+++..+.
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~ 102 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA 102 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc
Confidence 377899999997 543 34556788999999987764
No 474
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.71 E-value=0.064 Score=44.34 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=21.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++.+.+.|++|+|||+|..++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567788999999999999997654
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.54 E-value=0.044 Score=44.87 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||+..|+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 476
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.50 E-value=0.057 Score=43.34 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++.|.+.|++|+|||+|+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999653
No 477
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.50 E-value=0.046 Score=42.26 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+.+.|++|+|||+|+..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999865
No 478
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.49 E-value=0.029 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.++|+|+.|+|||||++.|.+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999965
No 479
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.038 Score=50.66 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.4
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999999975
No 480
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.46 E-value=0.054 Score=44.24 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
....+.+.|++|+|||+|+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999664
No 481
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.42 E-value=0.05 Score=42.59 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+|+|.+|+||||+...|....+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999876544
No 482
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.40 E-value=0.28 Score=39.57 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=26.8
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+.+||||+... ......+..+|.+|+++..+.
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~ 178 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK 178 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh
Confidence 47789999998654 335566777999999997763
No 483
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.39 E-value=0.02 Score=52.12 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=18.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 579999999999999999854
No 484
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.35 E-value=0.064 Score=42.62 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=22.3
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...+..-|++.|..|+||||+++.|...
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445677999999999999999998653
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.32 E-value=0.026 Score=56.44 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
+|+|||++|+|||||++.|+.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999999854
No 486
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.25 E-value=0.064 Score=44.28 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...++.+.|++|+|||+|..++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999987653
No 487
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.23 E-value=0.057 Score=42.27 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+.|.|++|+|||+|+..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998754
No 488
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.23 E-value=0.057 Score=41.13 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.-|++.|++|+|||||.-.|+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35889999999999999999764
No 489
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.14 Score=44.28 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++-|.+.|++|+|||.|..++....+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 356799999999999999999976543
No 490
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.21 E-value=0.025 Score=51.66 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999854
No 491
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.20 E-value=0.073 Score=45.30 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
...++|+++|++|+|||||...|....
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345689999999999999999886543
No 492
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.19 E-value=0.076 Score=43.12 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.....+.+.|++|+|||+|..++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999999999653
No 493
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.16 E-value=0.23 Score=43.62 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.+.|++|+|||+|+.++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999664
No 494
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.11 E-value=0.057 Score=46.00 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.++|.|++|+|||||+..+....
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999997643
No 495
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.07 E-value=0.039 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=0.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
No 496
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.07 E-value=0.047 Score=49.27 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999763
No 497
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.03 E-value=0.06 Score=45.63 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
....++|.|++|+|||||++.+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 498
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.02 E-value=0.067 Score=44.33 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
...|.+.|++|+|||+|+.++....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4568999999999999999997643
No 499
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.95 E-value=0.042 Score=49.58 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999965
No 500
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.93 E-value=0.053 Score=45.76 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.+++.+.|++|+|||||+..|.+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334499999999999999999877
Done!