RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12244
(257 letters)
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 115 bits (289), Expect = 4e-31
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 38/165 (23%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTA 82
+ +RN S+IAHVDHGKSTL D L++ G + + +G ++ D+ + EQERGIT+K+
Sbjct: 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 73
Query: 83 SLRYTS----------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---- 128
SL DG +L+NLID+PGHVDFS+EVT +L G ++++D
Sbjct: 74 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 133
Query: 129 ----------------------NQVDLKNANPEACEEQLQTLFNI 151
N+VD + +E L F
Sbjct: 134 CVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFAR 178
Score = 83.2 bits (205), Expect = 3e-19
Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTA 255
+ +RN S+IAHVDHGKSTL D L++ G + + +G ++ D+ + EQERGIT+K+
Sbjct: 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 73
Query: 256 SL 257
SL
Sbjct: 74 SL 75
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 105 bits (262), Expect = 1e-27
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKA 79
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 61
Query: 80 QTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPE 139
+ + +++ +N+ID PGHVDF+ EV RS+ G +++ D++ +
Sbjct: 62 AVTTCFW------KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSS---------Q 106
Query: 140 ACEEQLQTLFN-IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI 198
E Q +T++ +K V RI L + + L ++ + +PI
Sbjct: 107 GVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL---GARPVVMQ-LPI 162
Query: 199 ARIRNFSIIAHVDHGK 214
R FS I V K
Sbjct: 163 GREDTFSGIIDVLRMK 178
Score = 72.8 bits (178), Expect = 7e-16
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 61
Query: 253 Q 253
Sbjct: 62 A 62
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 101 bits (253), Expect = 6e-27
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS---SQVLDSLQVEQERGITVKAQTASLRY 86
N I HVDHGK+TL L + + +D E+ RGIT+
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 64
Query: 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ + +D PGH D+ + A G +L++ A
Sbjct: 65 ------AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD 102
Score = 59.6 bits (144), Expect = 2e-11
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS---SQVLDSLQVEQERGITVKAQTAS 256
N I HVDHGK+TL L + + +D E+ RGIT+
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVE 61
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 93.7 bits (232), Expect = 8e-24
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-----------------VLDSLQVEQE 72
N +I HVDHGKSTL RLL G + + +LD L+ E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132
RG+T+ + ++Y +ID PGH DF + + +L++ A
Sbjct: 65 RGVTINLTFMR------FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK--- 115
Query: 133 LKNANPEACEEQLQTLFNIDKKSVLRI 159
K + QT +I + +
Sbjct: 116 -KGEYEAGMSVEGQTREHIILAKTMGL 141
Score = 56.4 bits (135), Expect = 3e-10
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-----------------VLDSLQVEQE 245
N +I HVDHGKSTL RLL G + + +LD L+ E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 246 RGITVKAQTASL 257
RG+T+
Sbjct: 65 RGVTINLTFMRF 76
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 87.0 bits (215), Expect = 1e-21
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYT 87
N I HVDHGK+TL + ++ + + +D+ E+ RGIT+ A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 64
Query: 88 SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
D PGH D+ + A G +L++ AN
Sbjct: 65 ------ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND 101
Score = 60.8 bits (147), Expect = 5e-12
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASL 257
N I HVDHGK+TL + ++ + + +D+ E+ RGIT+ A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY 61
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 87.8 bits (217), Expect = 2e-21
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-----------------VLDSLQVEQE 72
N +I HVD GKST L+ G + + VLD L+ E+E
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
RGIT+ +Y + +ID PGH DF + + +L+I
Sbjct: 68 RGITIDIALWKFET------PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 119
Score = 48.9 bits (116), Expect = 1e-07
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-----------------VLDSLQVEQE 245
N +I HVD GKST L+ G + + VLD L+ E+E
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 246 RGITV 250
RGIT+
Sbjct: 68 RGITI 72
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 80.7 bits (198), Expect = 5e-19
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-------------------VLDSLQ 68
+ F +VD GKSTL RLL + + ++D LQ
Sbjct: 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 68
Query: 69 VEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
E+E+GIT+ + + DTPGH ++ + + C ++L+DA
Sbjct: 69 AEREQGITIDVAYRYFSTA------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDA 122
Query: 129 NQ 130
Sbjct: 123 RY 124
Score = 60.6 bits (146), Expect = 9e-12
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 19/75 (25%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-------------------VLDSLQ 241
+ F +VD GKSTL RLL + + ++D LQ
Sbjct: 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 68
Query: 242 VEQERGITVKAQTAS 256
E+E+GIT+
Sbjct: 69 AEREQGITIDVAYRY 83
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 78.0 bits (191), Expect = 9e-18
Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 13/149 (8%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ----VLDSLQVEQERGITVKAQTAS 83
IR +++ H GK+TL + LL TG G + D + TV+ A
Sbjct: 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP 61
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN---QVDLKNANPEA 140
L + + + L+D PG+ DF E+ +L A ++ + A QV + A A
Sbjct: 62 LLFR------GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVA 115
Query: 141 CEEQLQTLFNIDKKSVLRIWHRRCFSCAD 169
L + + K ++
Sbjct: 116 ERLGLPRMVVVTKLDKGGDYYALLEDLRS 144
Score = 73.8 bits (180), Expect = 4e-16
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ----VLDSLQVEQERGITVKAQ 253
IR +++ H GK+TL + LL TG G + D + TV+
Sbjct: 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTG 58
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 68.1 bits (165), Expect = 2e-14
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVL--DSLQVEQERGITVKAQTASLRYT 87
N ++ HVDHGK+TL + + + S + + E G+ + T
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVT 69
Query: 88 ---------SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
++ ID PGH + A G +L++ AN+
Sbjct: 70 EPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
Score = 53.4 bits (127), Expect = 3e-09
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVL--DSLQVEQERGITVKAQ 253
N ++ HVDHGK+TL + + + S + + E G+ +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCK 62
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 66.8 bits (162), Expect = 8e-14
Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 27/158 (17%)
Query: 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV----------------- 63
+D+ N I HVD GKSTL +L +TG V ++
Sbjct: 17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWA 76
Query: 64 LDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVV 123
LDS E+E+G TV+ A +L+D PGH + + + V
Sbjct: 77 LDSTSEEREKGKTVEVGRAYFETE------HRRFSLLDAPGHKGYVTNMINGASQADIGV 130
Query: 124 LLIDANQVDLKNANPEACEEQLQTLFNIDKKSVLRIWH 161
L+I A + + E QT + I H
Sbjct: 131 LVISARRGEF----EAGFERGGQTREHAVLARTQGINH 164
Score = 56.0 bits (134), Expect = 5e-10
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 175 DSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS 234
D+T+L + + + K D+ N I HVD GKSTL +L +TG V
Sbjct: 3 DATDLQNEVDQELLK-----DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTME 57
Query: 235 QV-----------------LDSLQVEQERGITVK 251
++ LDS E+E+G TV+
Sbjct: 58 KIEREAKEAGKESWYLSWALDSTSEEREKGKTVE 91
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 56.3 bits (134), Expect = 2e-10
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 78
N I H+DHGK+TL+ L E+ T D L Q+RGIT+
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIAST-------SAHDKLPESQKRGITID 48
Score = 56.3 bits (134), Expect = 2e-10
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N I H+DHGK+TL+ L E+ T D L Q+RGIT+
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIAST-------SAHDKLPESQKRGITID 48
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 55.8 bits (133), Expect = 3e-10
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQ--TAS 83
N ++ HVDHGK+TL L + S G + + E R +
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 66
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
Y ++ ID PGH + + G +L+I AN+
Sbjct: 67 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 113
Score = 50.8 bits (120), Expect = 2e-08
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKA 252
N ++ HVDHGK+TL L + D+ E RGIT+K
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWT-----------DTHSEELRRGITIKI 45
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 55.8 bits (133), Expect = 5e-10
Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 32/200 (16%)
Query: 27 RIRN--FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASL 84
+IR+ S++ HVDHGK+TL D + +G + + + ++
Sbjct: 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGG--ITQHIGATEIPMDVIEGICGDF 59
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------------- 128
+ L IDTPGH F+ R A +L++D
Sbjct: 60 LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 129 ----------NQVDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTN 178
N++D + F+ V + + + +
Sbjct: 120 MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFES 179
Query: 179 LNDGLAKPDSKATPYEDIPI 198
+ IPI
Sbjct: 180 ERFDRVTDFASQVSI--IPI 197
Score = 52.8 bits (125), Expect = 6e-09
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 200 RIRN--FSIIAHVDHGKSTLADRLLEMTGTVLSSG 232
+IR+ S++ HVDHGK+TL D + +G
Sbjct: 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAG 36
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 37.8 bits (87), Expect = 4e-04
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GK+ + R E D+ I + + ++ DG+ L +
Sbjct: 18 GKTCVLFRFSE--------------DAFNSTFISTIGIDFKIRTIEL----DGKRIKLQI 59
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
DT G F T G++L+ D
Sbjct: 60 WDTAGQERFRTITTAYYRGAMGIMLVYDIT 89
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 36.2 bits (82), Expect = 0.002
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS 57
+I+ + GKSTL + +L ++S
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVS 37
Score = 36.2 bits (82), Expect = 0.002
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS 230
+I+ + GKSTL + +L ++S
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVS 37
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 35.7 bits (81), Expect = 0.003
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 28/128 (21%)
Query: 33 IIAHVDHGKSTLADRLLEMTGTV-------LSSGSSQVLDSLQVEQERGIT--------- 76
+ GK+TL L +G ++ ++ +T
Sbjct: 5 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGY 64
Query: 77 ------------VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVL 124
+ + + +E LIDTPG ++ + + +
Sbjct: 65 GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY 124
Query: 125 LIDANQVD 132
+ D
Sbjct: 125 PLVVYISD 132
Score = 33.4 bits (75), Expect = 0.015
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 206 IIAHVDHGKSTLADRLLEMTGT 227
+ GK+TL
Sbjct: 5 FVGTAGSGKTTLTGEFGRYLED 26
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 32.5 bits (74), Expect = 0.005
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 167 CADCHRSLDSTNLNDGLAKP 186
C C ++LDST + +
Sbjct: 2 CMVCKKNLDSTTVAVHGDEI 21
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 32.0 bits (73), Expect = 0.006
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 167 CADCHRSLDSTNLND 181
CA C +SL+ST L D
Sbjct: 2 CAKCGKSLESTTLAD 16
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 33.2 bits (74), Expect = 0.015
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 32 SIIAHVDHGKSTLADRLL 49
+I+ + GKSTL + LL
Sbjct: 9 AIVGKPNVGKSTLLNNLL 26
Score = 33.2 bits (74), Expect = 0.015
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 205 SIIAHVDHGKSTLADRLL 222
+I+ + GKSTL + LL
Sbjct: 9 AIVGKPNVGKSTLLNNLL 26
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.1 bits (72), Expect = 0.038
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GKS L R +E D I + + ++ +G++ L +
Sbjct: 14 GKSCLLVRFVE--------------DKFNPSFITTIGIDFKIKTVDI----NGKKVKLQI 55
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
DT G F T G++L+ D + + + + + ++
Sbjct: 56 WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115
Query: 160 WHRRCFSC 167
Sbjct: 116 KSDMETRV 123
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 31.7 bits (70), Expect = 0.051
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 31 FSIIAHVDHGKSTLADRLLEMTGTVLSS 58
I+ + GKSTL ++L++ ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVED 30
Score = 31.7 bits (70), Expect = 0.051
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 204 FSIIAHVDHGKSTLADRLLEMTGTVLSS 231
I+ + GKSTL ++L++ ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVED 30
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.5 bits (70), Expect = 0.072
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 16/143 (11%)
Query: 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS 88
R + D GK+ L RLL + + +V RG ++ +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSL---------------AACQGVVLLIDANQVDL 133
+ + V S R + A LLI N+ D+
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120
Query: 134 KNA-NPEACEEQLQTLFNIDKKS 155
A + + ++QL+ N + +
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVT 143
Score = 27.7 bits (60), Expect = 1.1
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 202 RNFSIIAHVDHGKSTLADRLLE 223
R + D GK+ L RLL
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLT 22
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.9 bits (68), Expect = 0.085
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 17 ATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS 58
A +P + + GKS+ + L +S
Sbjct: 5 APDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS 46
Score = 30.9 bits (68), Expect = 0.085
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 190 ATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS 231
A +P + + GKS+ + L +S
Sbjct: 5 APDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS 46
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.5 bits (67), Expect = 0.13
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 32 SIIAHVDHGKSTLADRLL 49
+I+ + GKSTL ++LL
Sbjct: 9 AIVGRPNVGKSTLLNKLL 26
Score = 30.5 bits (67), Expect = 0.13
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 205 SIIAHVDHGKSTLADRLL 222
+I+ + GKSTL ++LL
Sbjct: 9 AIVGRPNVGKSTLLNKLL 26
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 30.2 bits (67), Expect = 0.15
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 18/107 (16%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GKS L R + D+ + I V + ++ + L +
Sbjct: 18 GKSCLLLRFSD--------------DTYTNDYISTIGVDFKIKTVELDG----KTVKLQI 59
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQ 146
DT G F + G++++ D + N +E +
Sbjct: 60 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 106
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.8 bits (66), Expect = 0.20
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GK+ L R + +K T ++GE+ L +
Sbjct: 17 GKTCLVRRFTQ----------GLFPPGQGATIGVDFMIK--------TVEINGEKVKLQI 58
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVL 124
DT G F + + ++L
Sbjct: 59 WDTAGQERFRSITQSYYRSANALIL 83
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 29.1 bits (64), Expect = 0.38
Identities = 17/143 (11%), Positives = 37/143 (25%), Gaps = 25/143 (17%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GK++ R + DS + + + ++ + L +
Sbjct: 17 GKTSFLFRYAD--------------DSFTPAFVSTVGIDFKVKTIYRND----KRIKLQI 58
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQTLFN-------ID 152
DT G + T G +L+ D + NA + + ++ +
Sbjct: 59 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 153 KKSVLRIWHRRCFSCADCHRSLD 175
K + L
Sbjct: 119 KCDMEDERVVSSERGRQLADHLG 141
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 31
Score = 26.1 bits (57), Expect = 0.44
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 165 FSCADCHRSLDSTNLND 181
F CA C +SL+ST L +
Sbjct: 1 FRCAKCGKSLESTTLTE 17
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 29.0 bits (63), Expect = 0.46
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 17 ATPYEDIPIARIRNFSIIAHVDHGKSTLADRL 48
A E P + ++ + GKS+ + L
Sbjct: 12 AVKPEQYPEGGLPEIALAGRSNVGKSSFINSL 43
Score = 29.0 bits (63), Expect = 0.46
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 190 ATPYEDIPIARIRNFSIIAHVDHGKSTLADRL 221
A E P + ++ + GKS+ + L
Sbjct: 12 AVKPEQYPEGGLPEIALAGRSNVGKSSFINSL 43
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 135
Score = 28.3 bits (62), Expect = 0.46
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 123 VLLIDANQVDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLN 180
LL+D D NAN + +Q L + VL + +
Sbjct: 14 QLLLD----DSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAA 67
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 28.4 bits (62), Expect = 0.70
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 31 FSIIAHVDHGKSTLADRLL--EMTGTVLSSGSSQVLD 65
I + GK++L L + TV+S D
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD 42
Score = 28.4 bits (62), Expect = 0.70
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 204 FSIIAHVDHGKSTLADRLL--EMTGTVLSSGSSQVLD 238
I + GK++L L + TV+S D
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD 42
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.1 bits (61), Expect = 0.76
Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 31/197 (15%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT 87
I + ++ + + GKS+L + T T S
Sbjct: 1 IADVGLVGYPNAGKSSLLAAM---TRAHPKIAPY----------------PFTTLSPNLG 41
Query: 88 SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQT 147
+ EE L D PG ++ ++E G+ L + + +A +E L+T
Sbjct: 42 VVEVSEEERFTLADIPGIIEGASEGKGL-----GLEFLRHIARTRVLLYVLDAADEPLKT 96
Query: 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSII 207
L + K+ +D L + ++ + + + +
Sbjct: 97 LETLRKEVGAYDPALLRRPSLVALNKVD-------LLEEEAVKALADALAREGLAVLPVS 149
Query: 208 AHVDHGKSTLADRLLEM 224
A G L + L +
Sbjct: 150 ALTGAGLPALKEALHAL 166
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.6 bits (60), Expect = 1.00
Identities = 11/81 (13%), Positives = 19/81 (23%)
Query: 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQTLFN 150
G+ L + DT G F + G +L+ D + NA +
Sbjct: 50 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ 109
Query: 151 IDKKSVLRIWHRRCFSCADCH 171
+
Sbjct: 110 NIVIILCGNKKDLDADREVTF 130
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 1.3
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GKS+L R + D+ E I V + ++ DG + L +
Sbjct: 19 GKSSLLLRFTD--------------DTFDPELAATIGVDFKVKTISV----DGNKAKLAI 60
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132
DT G F QGV+L+ D + D
Sbjct: 61 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD 93
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 25.1 bits (55), Expect = 1.4
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 167 CADCHRSLDSTNLNDGLAKP 186
C C ++L S + KP
Sbjct: 2 CEKCGKTLTSGGHAEHEGKP 21
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 24.7 bits (54), Expect = 1.6
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 138 PEACEEQLQTLFNIDKKSVL-RIWHRRCF 165
E C E +T++ +++ +++H CF
Sbjct: 7 RETCVECQKTVYPMERLLANQQVFHISCF 35
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.2 bits (59), Expect = 1.9
Identities = 24/190 (12%), Positives = 58/190 (30%), Gaps = 16/190 (8%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GK+ ++ +L + ++ + G + + + +
Sbjct: 14 GKTYISKKLTRYLNFI--GVPTREFN-------VGQYRRDMVKTYKSFEFFLPDNEEGLK 64
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDAN-------QVDLKNANPEACEEQLQTLFNID 152
I + N+V + L+ G V + DA + + +D
Sbjct: 65 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124
Query: 153 KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDH 212
+ + + D D + + + YE + + R+ S I +D
Sbjct: 125 PEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDV 184
Query: 213 GKSTLADRLL 222
G+S + +R+
Sbjct: 185 GQSYVVNRVA 194
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 26.6 bits (58), Expect = 2.3
Identities = 10/49 (20%), Positives = 14/49 (28%)
Query: 122 VVLLIDANQVDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADC 170
VV +ID C + D ++ L C C C
Sbjct: 100 VVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLC 148
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.2 bits (56), Expect = 2.8
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 32 SIIAHVDHGKSTLADRLL 49
I + GKS+L + L
Sbjct: 5 VIAGRPNAGKSSLLNALA 22
Score = 26.2 bits (56), Expect = 2.8
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 205 SIIAHVDHGKSTLADRLL 222
I + GKS+L + L
Sbjct: 5 VIAGRPNAGKSSLLNALA 22
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 26.2 bits (56), Expect = 2.9
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 33 IIAHVDHGKSTLADRLLE 50
++ GK+T + +
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
Score = 26.2 bits (56), Expect = 2.9
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 206 IIAHVDHGKSTLADRLLE 223
++ GK+T + +
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.1 bits (56), Expect = 3.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 32 SIIAHVDHGKSTLADRLL 49
I+ + GKSTL +RLL
Sbjct: 4 VIVGKPNVGKSTLLNRLL 21
Score = 26.1 bits (56), Expect = 3.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 205 SIIAHVDHGKSTLADRLL 222
I+ + GKSTL +RLL
Sbjct: 4 VIVGKPNVGKSTLLNRLL 21
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 25.6 bits (55), Expect = 5.7
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 40 GKSTLADRLLEMTGTVLSSGS 60
GKST L G V +
Sbjct: 26 GKSTFIQEHLVSAGYVHVNRD 46
Score = 25.6 bits (55), Expect = 5.7
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 213 GKSTLADRLLEMTGTVLSSGS 233
GKST L G V +
Sbjct: 26 GKSTFIQEHLVSAGYVHVNRD 46
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 24.3 bits (52), Expect = 6.0
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 140 ACEEQLQTLFNIDKKSVLRIWHRRCFSCADCH 171
CE + I C C +
Sbjct: 13 VCEPECPNGAISQGDETYVIEPSLCTECVGHY 44
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.5 bits (55), Expect = 7.1
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 122 VVLLIDANQVDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRS 173
+ L+ +A + DL + NP L + N+ + + + +
Sbjct: 101 IRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT 152
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 25.3 bits (54), Expect = 7.8
Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 38/204 (18%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASL 84
+A + ++ GKSTL + + ++ T +L
Sbjct: 1 LADV---GLVGFPSVGKSTLLSVV---SSA-----------KPKIADYHFTT---LVPNL 40
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNE----VTRSLAACQGVVLLIDANQVDLKNANPEA 140
DG ++ + D PG ++ +++ + L + +++ +D+
Sbjct: 41 GMVETDDGRSFV--MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH--VIDMSGLEGRD 96
Query: 141 CEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR 200
+ T+ + LR+ R A+ ++ + K +D P+
Sbjct: 97 PYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAF-----KEKLTDDYPV-- 149
Query: 201 IRNFSIIAHVDHGKSTLADRLLEM 224
F I A G L +
Sbjct: 150 ---FPISAVTREGLRELLFEVANQ 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 886,464
Number of extensions: 38942
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 72
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.5 bits)