BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12245
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 353 bits (907), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 163/173 (94%), Positives = 169/173 (97%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIGACRHGDRCSRIHNKPTFSQT+LL NLY+NPQNSAKSADGSHL++NV+DEE
Sbjct: 16 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEE 75
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR E DAEKA NDLNNR
Sbjct: 76 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNR 135
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173
WFGGRPVY+ELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY
Sbjct: 136 WFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 311 bits (797), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 167/187 (89%), Gaps = 4/187 (2%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIGACRHGDRCSR+HNKPTFSQTI+LLNLY NPQN+A++ADGSH +V+D E
Sbjct: 16 VNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHC--HVSDVE 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV +LNNR
Sbjct: 74 VQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNR 133
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSR--RKR 178
WF G+ V+AELSPVTDFRE+CCRQYEMGECTR GFCNFMHL+PISR LRR LY R R R
Sbjct: 134 WFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGRGPRHR 193
Query: 179 SSRRSRS 185
S RS +
Sbjct: 194 SPPRSHT 200
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 311 bits (797), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 167/187 (89%), Gaps = 4/187 (2%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIGACRHGDRCSR+HNKPTFSQTI+LLNLY NPQN+A++ADGSH +V+D E
Sbjct: 16 VNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHC--HVSDVE 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV +LNNR
Sbjct: 74 VQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNR 133
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSR--RKR 178
WF G+ V+AELSPVTDFRE+CCRQYEMGECTR GFCNFMHL+PISR LRR LY R R R
Sbjct: 134 WFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGRGPRHR 193
Query: 179 SSRRSRS 185
S RS +
Sbjct: 194 SPPRSHT 200
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 310 bits (793), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 146/173 (84%), Positives = 158/173 (91%), Gaps = 2/173 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIGACRHGDRCSR+HNKPTFSQTI LLN+Y NPQNS++SADG L V+D E
Sbjct: 16 VNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADG--LRCAVSDVE 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
MQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV DLNNR
Sbjct: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173
WF G+P++AELSPVTDFREACCRQYEMGECTR GFCNFMHLKPISRELRR LY
Sbjct: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 310 bits (793), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 146/173 (84%), Positives = 158/173 (91%), Gaps = 2/173 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIGACRHGDRCSR+HNKPTFSQTI LLN+Y NPQNS++SADG L V+D E
Sbjct: 16 VNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADG--LRCAVSDVE 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
MQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV DLNNR
Sbjct: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173
WF G+P++AELSPVTDFREACCRQYEMGECTR GFCNFMHLKPISRELRR LY
Sbjct: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 310 bits (793), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 146/173 (84%), Positives = 158/173 (91%), Gaps = 2/173 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIGACRHGDRCSR+HNKPTFSQTI LLN+Y NPQNS++SADG L V+D E
Sbjct: 16 VNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADG--LRCAVSDVE 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
MQEHYD FFE+VF E E+KYGE+EEMNVCDNLGDHLVGNVY+KFRREEDAEKAV DLNNR
Sbjct: 74 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 133
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173
WF G+P++AELSPVTDFREACCRQYEMGECTR GFCNFMHLKPISRELRR LY
Sbjct: 134 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 306 bits (785), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 142/173 (82%), Positives = 161/173 (93%), Gaps = 2/173 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIGACRHGDRCSR+HNKPTFSQTI+LLNLY NPQN+A++ADGSH +V+D E
Sbjct: 16 VNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSH--CHVSDVE 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+QEHYDNFFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREEDAE+AV +LNNR
Sbjct: 74 VQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNR 133
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173
WF G+ V+AELSPVTDFRE+CCRQYEMGECTR GFCNFMHL+PISR+LRR LY
Sbjct: 134 WFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLY 186
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 294 bits (753), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 135/173 (78%), Positives = 157/173 (90%), Gaps = 2/173 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIG CRHGDRCSR+HNKPTFSQTI+LLNLY NPQN+A++ADGSH +V+D E
Sbjct: 16 VNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHC--HVSDVE 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+QEHYD+FFE+VF E ++KYGEIEEMNVCDNLGDHLVGNVY+KFRREED E+AV +L+NR
Sbjct: 74 VQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNR 133
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173
WF G+ V+ ELSPVTDFRE+CCRQYEMGECTR GFCNFMHL+PIS+ L+R LY
Sbjct: 134 WFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLY 186
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/178 (58%), Positives = 129/178 (72%), Gaps = 9/178 (5%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFY+KIGACRHG+RCSR H KP FSQTIL N+Y NP + T E
Sbjct: 16 VNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIHEPNG-------KKFTQRE 68
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+ E +D F+ED+F E KYGE+E++ VCDN+GDHLVGNVY++F+ EE A+ A++DLN+R
Sbjct: 69 LAEQFDAFYEDMFCEF-SKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSR 127
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL-KPISRELRRYLYSRRK 177
W+ RPVYAELSPVTDFREACCRQ+E EC R G CNFMH KP + LR + ++RK
Sbjct: 128 WYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRK 185
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 124/173 (71%), Gaps = 3/173 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNC FYFKIGACRHGDRCSR+HN+PT S TI+L N+Y P D + E+
Sbjct: 16 VNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQG--QPIDPEK 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
MQEH+++F+ED++ E K+GE+E +NVCDNL DH++GNVY++FR EE A A N L R
Sbjct: 74 MQEHFEDFYEDIYEEL-SKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGR 132
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173
++ GRP+ E SPVTDFREA CRQ+E C R G+CNFMH+K I RELRR LY
Sbjct: 133 FYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGRELRRKLY 185
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 213 bits (542), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 133/192 (69%), Gaps = 8/192 (4%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNC FYFKIGACRHGDRCSR+HNKP+ S T+LL N+Y+ P D + + E+
Sbjct: 16 VNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQG--NPIDPEK 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+Q +++F+ED+F E KYGEIE ++VCDN DH++GNVY++FR E+ A +A+ L R
Sbjct: 74 IQADFEDFYEDIFEELS-KYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGR 132
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY-----SR 175
++ GRP+ E SPV+DFREA CRQYE C R G+CNFMH+K I R+LR+ L+ SR
Sbjct: 133 YYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDLRKRLFGHLHRSR 192
Query: 176 RKRSSRRSRSRS 187
R S RSRS S
Sbjct: 193 RSHSHGRSRSPS 204
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 125/173 (72%), Gaps = 3/173 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNC FYFKIGACRHGDRCSR+HN+PT S T+LL N+Y P D + +
Sbjct: 16 VNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQG--QPLDPRK 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+QEH+++FFED+F E K+GEIE +N+CDNL DH++GNVY++F+ E+ A A+ L R
Sbjct: 74 IQEHFEDFFEDLFEEL-GKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGR 132
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173
++ GRP+ A+ SPVTDFREA CRQYE C R G+CNFMH+K +SRELRR L+
Sbjct: 133 FYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLF 185
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 202 bits (515), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 125/174 (71%), Gaps = 3/174 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNC FYFKIGACRHGDRCSR+HN+PT S T+LL N+Y P D + +
Sbjct: 16 VNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQG--QPLDPSK 73
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+Q+H+++F+ED+F E +K+GE+E +NVCDNL DH++GNVY+ F+ E+ A A+ L R
Sbjct: 74 IQDHFEDFYEDIFEEL-NKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGR 132
Query: 121 WFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYS 174
++ GRP+ A+ SPVTDFREA CRQYE C R G+CNFMH+K ISRELRR L+
Sbjct: 133 FYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISRELRRKLFG 186
>sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa
GN=U2AF1 PE=2 SV=3
Length = 82
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 64/69 (92%), Gaps = 2/69 (2%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
VNCSFYFKIGACRHGDRCSR+HNKPTFSQTI+LLNLY NPQN+A++ADGSH +V+D E
Sbjct: 16 VNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSH--CHVSDVE 73
Query: 61 MQEHYDNFF 69
+QEHYDNFF
Sbjct: 74 VQEHYDNFF 82
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNV--TD 58
NC FY K GACR GDRCSR HN PT S T+L+ +++ D +++ ++
Sbjct: 170 ANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSE 229
Query: 59 EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 118
EE + + +F+EDV E ++ G++ + V NL HL GNVY++++ EE+ + A++ N
Sbjct: 230 EETYQQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFN 288
Query: 119 NRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL 161
RW+ GR + E PVT ++ A C +E+ +C R CNF+H+
Sbjct: 289 GRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 331
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNV--TD 58
NC FY K GACR GDRCSR HN PT S T+L+ +++ D +++ ++
Sbjct: 175 ANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSE 234
Query: 59 EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 118
EE + + +F+EDV E ++ G++ + V NL HL GNVY++++ EE+ + A++ N
Sbjct: 235 EETYQQFLDFYEDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFN 293
Query: 119 NRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL 161
RW+ GR + E PVT ++ A C +E+ +C R CNF+H+
Sbjct: 294 GRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 336
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNV--TD 58
NC FY K GACR GDRCSR HN PT S T+L+ ++ D S++ ++
Sbjct: 174 ANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLEFSE 233
Query: 59 EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 118
EE+ + + +F+ DV E + G++ + V NL HL GNVY++++ EED + A + N
Sbjct: 234 EEIYQQFLDFYYDVLPEFKS-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFN 292
Query: 119 NRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL 161
RW+ GR + E PVT ++ A C +E+ +C R CNF+H+
Sbjct: 293 GRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHV 335
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 2 NCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNV--TDE 59
+C FY K GACR G+RCSR H+ PT S T+L+ +++ D +N+ ++E
Sbjct: 162 SCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANLEYSEE 221
Query: 60 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 119
E + + +F+ DV E ++ G++ + V NL HL GNVY++++ EE+ + A++ N
Sbjct: 222 ETYQQFLDFYHDVLPEFKN-VGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNG 280
Query: 120 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHL 161
RW+ GR + E PVT ++ A C +EM +C + CNF+H+
Sbjct: 281 RWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHV 322
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
+C F+ K GACR G RCSR+H P S T+L+ N+Y P + + +G TDEE
Sbjct: 244 AHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWEQDEGL----EYTDEE 299
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+ Y+ F+EDV E KYGE+ VC N HL GNVY+ +R E A A +N R
Sbjct: 300 AELCYEEFYEDVHTEFL-KYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGR 358
Query: 121 WFGGRPVYAELSPVTDFREACCRQY---EMGECTRSGFCNFMH 160
+F G+ V E ++ ++ A C +Y + C+R CNF+H
Sbjct: 359 YFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 8/163 (4%)
Query: 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEE 60
+C F+ K GACR G RCSR+H P S T+L+ N+Y P + + +G TDEE
Sbjct: 167 AHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMRNMYSGPGLALEQDEG----LECTDEE 222
Query: 61 MQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120
+++ Y+ F+EDV E K+GE+ VC N HL GNVY+ ++ + A A + +N R
Sbjct: 223 IEQSYEEFYEDVHTEFL-KFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGR 281
Query: 121 WFGGRPVYAELSPVTDFREACCRQY---EMGECTRSGFCNFMH 160
+F G+ + E VT ++ A C +Y C+R CNF+H
Sbjct: 282 YFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIH 324
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
+DV EC++KYG++ + V N +G +++KF + AEKA+ L+ RWFGGR + A
Sbjct: 530 QDVKEECDEKYGKVVHIAVVPNE----LGQIFVKFENADFAEKAITGLHQRWFGGRTIKA 585
Query: 130 ELSPVTDF 137
+ P TD+
Sbjct: 586 SILPETDY 593
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 290 EDLRVECS-KFGQIRKLLLFDR---HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITA 345
Query: 130 EL-SPVTDFR 138
+ TD++
Sbjct: 346 QAWDGTTDYQ 355
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVEC-SKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 130 EL-SPVTDFR 138
+ TD++
Sbjct: 345 QAWDGTTDYQ 354
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 66 DNFFEDVFVECEDKYGEIEEMNV-CDNLGDH----LVGNVYIKFRREEDAEKAVNDLNNR 120
D+ +V EC KYG + + + + G+ ++ ++++F + KA+ LNNR
Sbjct: 434 DDLEGEVMEEC-GKYGAVNRVIIYQERQGEEDDAEIIVKIFVEFSDAGEMNKAIQALNNR 492
Query: 121 WFGGRPVYAEL 131
WF GR V AEL
Sbjct: 493 WFAGRKVVAEL 503
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
ED+ VEC K+G+I ++ + D H G + FR E+A+ + L+ RWFGGR + A
Sbjct: 289 EDLRVEC-SKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 344
Query: 130 EL-SPVTDFR 138
+ TD++
Sbjct: 345 QAWDGTTDYQ 354
>sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1
Length = 401
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 75 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 329 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 384
>sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1
Length = 405
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 75 ECEDKYGEIEEMNVCDNLG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
ECE KYG++ + + + G D ++++F R E A KAV DLN R+FGGR V A
Sbjct: 333 ECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 388
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 96 LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131
++ ++++F + KA+ DLN RWF GR V AE+
Sbjct: 482 IIVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEV 517
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 95 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131
++ ++++F + KA+ LN RWFGGR V AE+
Sbjct: 515 EIIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEV 551
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 95 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131
++ ++++F + KA+ LN RWFGGR V AE+
Sbjct: 515 EIIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEV 551
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic
OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2
Length = 387
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 66 DNFFEDVFVECEDKYGEIEEMNVCD----NLGDHLVGNVYIKFRREEDAEKAVNDLNNRW 121
D ++V EC KYG + + + + N H ++++F R E+ KA+ DL+ R+
Sbjct: 298 DELEDEVGGEC-GKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRY 356
Query: 122 FGGRPVYA-----------ELSPV 134
FGGR V A EL+PV
Sbjct: 357 FGGRTVRATFYDEEKFSKNELAPV 380
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 52 LISNVTDEEMQ--EHYDNFFEDVFVECEDKYGEIEEMNVC----DNLGDHLVGNVYIKFR 105
L V+ +E++ E Y++ ED+ +E KYG + ++ + L VG V++++
Sbjct: 451 LTQVVSADELKDDEEYEDIMEDMRLEA-GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYA 509
Query: 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140
+ A KA ++ R FGG PV A P F A
Sbjct: 510 DVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSA 544
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 21/114 (18%)
Query: 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEI 83
+P +Q L N++ NPQ T+EE+ +D +D +E +K+G +
Sbjct: 413 QPLATQCFQLSNMF-NPQ---------------TEEEV--GWDTEIKDDVIEECNKHGGV 454
Query: 84 EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 137
+ V N GNVY+K A AVN L+ RWF G+ + A P+ +
Sbjct: 455 IHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 505
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 21/114 (18%)
Query: 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEI 83
+P +Q L N++ NPQ T+EE+ +D +D +E +K+G +
Sbjct: 419 QPLATQCFQLSNMF-NPQ---------------TEEEV--GWDTEIKDDVIEECNKHGGV 460
Query: 84 EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 137
+ V N GNVY+K A AVN L+ RWF G+ + A P+ +
Sbjct: 461 IHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 511
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 21/114 (18%)
Query: 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEI 83
+P +Q L N++ NPQ T+EE+ +D +D +E +K+G +
Sbjct: 419 QPLATQCFQLSNMF-NPQ---------------TEEEV--GWDTEIKDDVIEECNKHGGV 460
Query: 84 EEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 137
+ V N GNVY+K A AVN L+ RWF G+ + A P+ +
Sbjct: 461 IHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 511
>sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1
PE=1 SV=1
Length = 419
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 53 ISNVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREE 108
+ NV D+ E ++ Y++ EDV EC+ KYG + + V +N G G V++++
Sbjct: 325 LLNVLDDDYLENEDEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAG 380
Query: 109 DAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138
D++ A L R F G+ V A P++ ++
Sbjct: 381 DSKAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1
SV=3
Length = 419
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 53 ISNVTDE---EMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREE 108
+ NV D+ E ++ Y++ EDV EC+ KYG + + V +N G G V++++
Sbjct: 325 LLNVLDDDYLENEDEYEDVVEDVKEECQ-KYGPVVSLLVPKENPGR---GQVFVEYANAG 380
Query: 109 DAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138
D++ A L R F G+ V A P++ ++
Sbjct: 381 DSKAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 38.5 bits (88), Expect = 0.030, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 70 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 126
E + E G++ + VC D + +G Y+ F + ED EKA+ DLN GRP
Sbjct: 64 EALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRP 121
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 101 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQ 144
++ F E+A KA+ ++N R G+P+Y L+ D R + Q
Sbjct: 379 FVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQ 422
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 59 EEMQEHYDN---------FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
EEM+ ++ N F E+ F + + YG+I + + + G ++ F E
Sbjct: 225 EEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHES 284
Query: 110 AEKAVNDLNNRWFGGRPVYAELSPVTDFR-EACCRQYE 146
A KAV++LN++ G+ +Y + R E +QYE
Sbjct: 285 AVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYE 322
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 38.1 bits (87), Expect = 0.036, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 23/111 (20%)
Query: 32 LLLN---LYINPQNSAKSADGSHLISNVTDEEMQEHYDN-FFEDVFVECEDKYGEIEEMN 87
+LLN +Y+ P S K + EEM+ ++ N + +++ E DK E EE+
Sbjct: 186 MLLNGQEIYVGPHLSKKERESKF-------EEMKANFTNVYIKNINTETTDK--EFEELV 236
Query: 88 VCDNLGDHLV----------GNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128
D +V G ++ F EDA K V +LNN F G+P+Y
Sbjct: 237 AKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLY 287
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 80 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 139
YG I V G ++ F E+A KA+ + N + G+P+Y ++ D R
Sbjct: 342 YGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRR 401
Query: 140 A 140
+
Sbjct: 402 S 402
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 37.7 bits (86), Expect = 0.040, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 32 LLLN---LYINPQNSAKSADGSHLISNVTDEEMQEHYDNFF---------EDVFVECEDK 79
+LLN +Y+ P S K D S L EE + HY N + ++ F E K
Sbjct: 189 MLLNGQEIYVAPHLSRKERD-SQL------EETKAHYTNLYVKNINSETTDEQFQELFAK 241
Query: 80 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128
+G I ++ + L G ++ + + EDA KAV LN+ G +Y
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLY 290
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 51 HLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 110
+L +V DE+++E + YG I V G ++ F E+A
Sbjct: 328 NLDDSVDDEKLEEEFA------------PYGTITSAKVMRTENGKSKGFGFVCFSTPEEA 375
Query: 111 EKAVNDLNNRWFGGRPVYAELSPVTDFREA 140
KA+ + N + G+P+Y ++ D R +
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKDVRRS 405
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 95 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131
++ ++++F + KA+ LN RWF GR V AE+
Sbjct: 509 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 545
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 95 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131
++ ++++F + KA+ LN RWF GR V AE+
Sbjct: 510 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 546
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 52 LISNVTDEEMQEH--YDNFFEDVFVECEDKYGEIEEMNVC----DNLGDHLVGNVYIKFR 105
L VT +E+ + Y + ED+ ECE K+G + + + + + +G V++++
Sbjct: 458 LTEVVTVDELNDDDDYQDILEDMRTECE-KFGALVNVVIPRPNPNGVPTPGLGKVFLEYA 516
Query: 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140
+ + KA LN R FGG V A P F E
Sbjct: 517 DVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEG 551
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 52 LISNVTDEEMQ--EHYDNFFEDVFVECEDKYGEIEEMNVC--DNLGDHL--VGNVYIKFR 105
L VT +E++ E Y++ ED+ +E KYG + ++ + G+ + VG V++++
Sbjct: 444 LTQVVTADELKDDEEYEDIMEDMRLEA-GKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYA 502
Query: 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 139
+ + KA ++ R FGG PV A P F +
Sbjct: 503 DVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFAD 536
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 36.6 bits (83), Expect = 0.094, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 29 QTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNV 88
Q I L L + P A + + + E Y + ED+ EC K+G + +NV
Sbjct: 455 QQIALQRLMLQPATLATKVLSLTEVISADELNDDEDYQDILEDMRTEC-GKFGSL--VNV 511
Query: 89 C------DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140
+ VG V++++ + + KA LN R FGG V A P F E
Sbjct: 512 VIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEG 569
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 36.6 bits (83), Expect = 0.099, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 49 GSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRRE 107
G I N++ E +E + + F +YG +EE+++ D G +Y++F ++
Sbjct: 310 GRLFIRNISYEASEEDFRSLFS--------QYGALEEVHIAIDTRTGKSKGFLYVQFLKK 361
Query: 108 EDAEKAVNDLNNRWFGGR 125
EDA +A L+ + F GR
Sbjct: 362 EDATRAYRSLDKQIFQGR 379
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 34 LNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVE--CED------KYGEIEE 85
+N P + K S ++S + Q+H+ F D+ E ED +G I +
Sbjct: 78 VNWATTPSSQKKDTSSSTVVST---QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 86 MNVCDNLGDHLV-GNVYIKFRREEDAEKAVNDLNNRWFGGRPV 127
V ++ G ++ F + DAE A+ + +W GGR +
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 70 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP 126
E + E + G + + VC D + +G Y+ F ED EKA+++LN GRP
Sbjct: 93 EAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRP 150
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 53 ISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEK 112
I N+ E ++ + + F ++GEI +++ + D G ++ + E A+K
Sbjct: 265 IKNLDTEITEQEFSDLF--------GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 113 AVNDLNNRWFGGRPVY 128
AV++LN++ + G+ +Y
Sbjct: 317 AVDELNDKEYKGKKLY 332
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 101 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140
++ + E+A KAV ++N R G+P+Y L+ + R +
Sbjct: 408 FVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRS 447
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 34 LNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVE--CED------KYGEIEE 85
+N P + K S ++S + Q+H+ F D+ E ED +G I +
Sbjct: 78 VNWATTPSSQKKDTSSSTVVST---QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 86 MNVCDNLGDHLV-GNVYIKFRREEDAEKAVNDLNNRWFGGRPV 127
V ++ G ++ F + DAE A+ + +W GGR +
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 41 QNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC-DNLGDHLVGN 99
Q++ + + S + N + E + E E G++ + VC D + +G
Sbjct: 36 QSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGY 95
Query: 100 VYIKFRREEDAEKAVNDLNNRWFGGRP 126
Y+ + + ED EKA+ +LN GRP
Sbjct: 96 AYVNYHKYEDGEKAIEELNYNPIEGRP 122
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 80 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 139
+G I V + G ++ F E+A KA+ ++N R G+P+Y L+ D R
Sbjct: 359 FGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRR 418
Query: 140 ACCRQ 144
+ Q
Sbjct: 419 SQLEQ 423
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,463,193
Number of Sequences: 539616
Number of extensions: 2991562
Number of successful extensions: 9874
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 9462
Number of HSP's gapped (non-prelim): 471
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)