Query psy12245
Match_columns 189
No_of_seqs 240 out of 1491
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:29:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202|consensus 100.0 2.8E-54 6.1E-59 358.6 4.9 186 1-188 16-202 (260)
2 TIGR01645 half-pint poly-U bin 99.8 1.2E-20 2.5E-25 175.9 11.2 95 23-140 509-608 (612)
3 TIGR01622 SF-CC1 splicing fact 99.8 1.6E-18 3.4E-23 156.1 10.4 98 22-140 356-453 (457)
4 KOG0147|consensus 99.8 4.2E-19 9.2E-24 160.6 5.5 93 26-140 441-533 (549)
5 KOG1548|consensus 99.7 3.2E-17 6.9E-22 141.9 8.7 96 23-138 260-356 (382)
6 TIGR01642 U2AF_lg U2 snRNP aux 99.7 4.9E-17 1.1E-21 148.1 9.5 97 26-140 407-507 (509)
7 KOG0120|consensus 99.7 1.5E-16 3.2E-21 144.9 7.2 78 62-140 416-497 (500)
8 smart00361 RRM_1 RNA recogniti 99.6 7.9E-15 1.7E-19 100.8 8.7 64 66-130 3-70 (70)
9 KOG0124|consensus 99.5 3E-14 6.6E-19 124.7 8.1 95 23-140 441-540 (544)
10 PF13893 RRM_5: RNA recognitio 99.5 2.3E-13 4.9E-18 89.2 8.4 56 72-132 1-56 (56)
11 KOG1996|consensus 99.5 5.9E-14 1.3E-18 119.8 6.0 91 27-140 280-372 (378)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.3E-12 4.9E-17 112.1 11.6 64 71-135 285-349 (352)
13 PLN03134 glycine-rich RNA-bind 99.3 1.2E-11 2.6E-16 96.6 11.2 63 70-133 49-112 (144)
14 PF00076 RRM_1: RNA recognitio 99.3 2.1E-11 4.5E-16 81.6 9.7 57 71-128 14-70 (70)
15 KOG0114|consensus 99.2 1.1E-10 2.5E-15 86.3 8.7 90 20-139 10-100 (124)
16 KOG0107|consensus 99.2 4.1E-11 8.9E-16 95.9 5.5 59 71-134 26-84 (195)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 3E-10 6.4E-15 98.8 11.0 78 28-133 3-81 (352)
18 KOG0153|consensus 99.1 2E-10 4.3E-15 100.1 9.2 121 2-134 163-302 (377)
19 TIGR01659 sex-lethal sex-letha 99.1 5E-10 1.1E-14 99.0 10.6 62 71-133 123-185 (346)
20 PF14259 RRM_6: RNA recognitio 99.1 6.2E-10 1.3E-14 75.2 8.7 58 70-128 13-70 (70)
21 smart00362 RRM_2 RNA recogniti 99.1 1.1E-09 2.5E-14 71.8 9.3 58 71-130 15-72 (72)
22 KOG4207|consensus 99.1 8.8E-11 1.9E-15 96.3 4.4 67 65-132 23-90 (256)
23 smart00360 RRM RNA recognition 99.1 9.4E-10 2E-14 71.9 8.1 60 70-130 11-71 (71)
24 TIGR01628 PABP-1234 polyadenyl 99.1 8.7E-10 1.9E-14 102.3 10.8 64 71-135 301-364 (562)
25 KOG0127|consensus 99.1 5E-10 1.1E-14 102.4 8.6 70 71-141 133-203 (678)
26 KOG0148|consensus 99.0 3.4E-10 7.5E-15 96.0 6.4 104 69-174 76-186 (321)
27 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.8E-09 6.1E-14 97.7 12.4 59 71-134 292-350 (481)
28 KOG0122|consensus 99.0 2.1E-09 4.5E-14 90.0 9.0 65 68-133 202-267 (270)
29 PLN03120 nucleic acid binding 99.0 3.8E-09 8.2E-14 89.7 10.3 77 27-134 3-79 (260)
30 cd00590 RRM RRM (RNA recogniti 99.0 5.9E-09 1.3E-13 68.7 9.0 61 70-131 14-74 (74)
31 TIGR01659 sex-lethal sex-letha 99.0 5.9E-09 1.3E-13 92.2 10.8 64 71-135 209-275 (346)
32 TIGR01622 SF-CC1 splicing fact 98.9 7.6E-09 1.6E-13 93.3 11.3 79 28-134 186-265 (457)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 7.9E-09 1.7E-13 94.7 10.1 75 27-134 1-77 (481)
34 KOG4206|consensus 98.9 5.6E-09 1.2E-13 86.3 8.0 79 28-132 9-87 (221)
35 KOG0113|consensus 98.9 4.8E-09 1E-13 90.0 7.3 76 64-140 110-189 (335)
36 TIGR01642 U2AF_lg U2 snRNP aux 98.9 1.6E-08 3.5E-13 92.3 11.2 62 71-133 311-373 (509)
37 TIGR01645 half-pint poly-U bin 98.9 1.1E-08 2.5E-13 96.1 9.8 61 71-132 123-184 (612)
38 TIGR01628 PABP-1234 polyadenyl 98.8 1.8E-08 3.9E-13 93.5 10.6 62 71-133 16-78 (562)
39 TIGR01648 hnRNP-R-Q heterogene 98.8 1.8E-08 3.8E-13 94.4 10.1 55 71-133 249-305 (578)
40 COG0724 RNA-binding proteins ( 98.8 2.9E-08 6.4E-13 79.9 9.8 62 71-133 131-193 (306)
41 KOG0148|consensus 98.8 1.7E-08 3.7E-13 85.8 7.2 58 71-134 180-237 (321)
42 KOG0125|consensus 98.7 2E-08 4.4E-13 87.2 6.8 62 70-133 111-172 (376)
43 KOG0121|consensus 98.7 3.2E-08 6.9E-13 76.0 6.9 61 71-132 52-113 (153)
44 TIGR01648 hnRNP-R-Q heterogene 98.7 5.9E-08 1.3E-12 90.9 9.8 61 71-132 74-135 (578)
45 KOG0130|consensus 98.7 2.2E-08 4.8E-13 77.5 5.2 66 66-132 83-149 (170)
46 PLN03121 nucleic acid binding 98.7 1.3E-07 2.9E-12 79.4 10.3 59 71-133 21-79 (243)
47 KOG0110|consensus 98.6 2E-07 4.4E-12 87.5 10.3 101 64-171 524-628 (725)
48 KOG0105|consensus 98.6 9E-08 2E-12 77.7 6.3 78 27-134 5-82 (241)
49 KOG0144|consensus 98.6 1E-07 2.2E-12 85.4 6.3 73 67-140 136-211 (510)
50 KOG0108|consensus 98.6 1E-07 2.2E-12 86.5 6.4 69 69-138 32-101 (435)
51 PLN03213 repressor of silencin 98.6 1.5E-07 3.3E-12 85.7 7.0 74 70-148 25-100 (759)
52 KOG0145|consensus 98.5 4.7E-07 1E-11 76.9 9.4 63 71-134 57-120 (360)
53 KOG0123|consensus 98.5 3.7E-07 8.1E-12 81.5 8.9 66 71-139 92-157 (369)
54 KOG0117|consensus 98.5 2.3E-07 5E-12 83.4 7.5 58 67-132 271-328 (506)
55 KOG0126|consensus 98.5 2.5E-08 5.5E-13 80.5 0.5 64 68-132 48-112 (219)
56 KOG0127|consensus 98.4 6.4E-07 1.4E-11 82.4 7.8 66 66-132 303-375 (678)
57 KOG0111|consensus 98.4 1.9E-07 4.2E-12 77.6 3.9 64 72-136 27-91 (298)
58 COG5175 MOT2 Transcriptional r 98.4 4.4E-07 9.5E-12 79.4 6.2 81 78-164 142-227 (480)
59 KOG0124|consensus 98.4 3E-07 6.5E-12 81.2 3.9 62 69-131 127-189 (544)
60 KOG0145|consensus 98.4 2.6E-06 5.7E-11 72.4 9.3 61 72-133 295-356 (360)
61 KOG4208|consensus 98.3 1.4E-06 3E-11 71.5 6.7 67 68-135 62-130 (214)
62 KOG0117|consensus 98.3 1.5E-06 3.2E-11 78.3 7.1 66 66-132 94-161 (506)
63 KOG0123|consensus 98.3 1.5E-06 3.3E-11 77.6 7.0 64 70-136 13-76 (369)
64 KOG0131|consensus 98.3 1.4E-06 3E-11 70.5 5.1 61 72-133 26-87 (203)
65 KOG0149|consensus 98.2 1.6E-06 3.4E-11 72.5 5.1 68 65-134 22-90 (247)
66 KOG0146|consensus 98.2 4.3E-06 9.2E-11 71.4 6.7 69 69-138 33-104 (371)
67 KOG0147|consensus 98.1 3.5E-06 7.6E-11 77.4 5.6 69 64-133 287-356 (549)
68 KOG0144|consensus 98.1 6.5E-06 1.4E-10 74.0 6.8 68 68-136 47-118 (510)
69 KOG0415|consensus 98.1 5E-06 1.1E-10 73.3 5.7 95 70-165 254-355 (479)
70 KOG0109|consensus 98.0 6.2E-06 1.3E-10 71.0 4.7 55 71-133 94-148 (346)
71 KOG0110|consensus 97.9 1.2E-05 2.6E-10 75.9 4.9 72 64-136 622-694 (725)
72 KOG4660|consensus 97.9 7.2E-06 1.6E-10 75.5 3.3 53 71-128 91-143 (549)
73 KOG4454|consensus 97.9 5.9E-06 1.3E-10 68.7 2.0 79 25-132 6-84 (267)
74 KOG4212|consensus 97.8 6.8E-05 1.5E-09 67.8 7.0 63 70-132 59-121 (608)
75 KOG0131|consensus 97.8 4.4E-05 9.5E-10 61.9 5.1 61 72-133 113-175 (203)
76 KOG2314|consensus 97.8 0.00014 3E-09 67.6 8.8 66 66-132 75-141 (698)
77 KOG0132|consensus 97.7 0.00017 3.7E-09 68.9 9.5 94 70-174 436-529 (894)
78 KOG4212|consensus 97.7 8.6E-05 1.9E-09 67.2 5.9 57 71-132 552-608 (608)
79 KOG0146|consensus 97.7 5.9E-05 1.3E-09 64.6 4.5 61 71-132 301-362 (371)
80 KOG1190|consensus 97.6 0.0005 1.1E-08 61.8 10.1 68 71-143 314-381 (492)
81 KOG4209|consensus 97.6 5.6E-05 1.2E-09 63.6 3.7 66 65-132 111-177 (231)
82 KOG4661|consensus 97.6 0.00012 2.6E-09 68.2 6.0 62 70-132 420-482 (940)
83 PF00642 zf-CCCH: Zinc finger 97.5 1.9E-05 4.2E-10 44.6 -0.6 23 1-23 4-26 (27)
84 PF08952 DUF1866: Domain of un 97.4 0.00077 1.7E-08 52.9 7.7 59 66-133 47-105 (146)
85 KOG0109|consensus 97.4 0.0005 1.1E-08 59.4 6.8 54 71-132 18-71 (346)
86 KOG1548|consensus 97.4 0.0014 3E-08 57.8 9.6 61 72-133 151-219 (382)
87 PF04059 RRM_2: RNA recognitio 97.3 0.0029 6.4E-08 46.4 9.4 78 30-133 3-85 (97)
88 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0013 2.8E-08 48.5 6.4 61 70-132 20-89 (100)
89 KOG0533|consensus 97.2 0.00096 2.1E-08 56.5 6.1 69 66-135 94-162 (243)
90 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0013 2.8E-08 42.9 4.9 40 69-114 14-53 (53)
91 smart00356 ZnF_C3H1 zinc finge 97.0 0.00044 9.5E-09 38.2 1.9 22 1-23 5-26 (27)
92 KOG0106|consensus 96.9 0.00071 1.5E-08 56.4 3.0 57 69-133 15-71 (216)
93 KOG0226|consensus 96.9 0.0011 2.4E-08 56.3 4.0 54 78-131 212-266 (290)
94 PF11608 Limkain-b1: Limkain b 96.6 0.0033 7.1E-08 45.1 3.9 46 81-135 32-77 (90)
95 PF08777 RRM_3: RNA binding mo 96.5 0.0055 1.2E-07 45.4 4.9 58 69-132 15-77 (105)
96 smart00356 ZnF_C3H1 zinc finge 96.5 0.0015 3.3E-08 36.0 1.4 25 137-161 2-26 (27)
97 KOG2068|consensus 96.5 0.0012 2.5E-08 57.9 1.3 82 75-163 100-186 (327)
98 PF15023 DUF4523: Protein of u 96.5 0.024 5.3E-07 44.6 8.4 55 70-132 105-159 (166)
99 PF00642 zf-CCCH: Zinc finger 96.4 0.00057 1.2E-08 38.5 -0.6 25 137-161 1-26 (27)
100 KOG0106|consensus 96.1 0.0032 7E-08 52.4 2.1 56 70-133 114-169 (216)
101 KOG4205|consensus 95.9 0.0051 1.1E-07 53.9 2.5 65 66-132 17-82 (311)
102 PF04847 Calcipressin: Calcipr 95.7 0.04 8.6E-07 44.9 6.7 63 69-137 9-73 (184)
103 KOG1855|consensus 95.6 0.015 3.3E-07 52.7 4.2 49 70-119 246-308 (484)
104 KOG4205|consensus 95.4 0.017 3.7E-07 50.7 4.0 66 66-133 108-174 (311)
105 KOG1365|consensus 95.4 0.027 5.8E-07 50.7 5.0 98 19-141 270-368 (508)
106 KOG4285|consensus 95.3 0.033 7.1E-07 48.6 5.2 51 71-128 212-262 (350)
107 KOG0116|consensus 95.1 0.025 5.4E-07 51.5 4.1 62 69-132 302-364 (419)
108 KOG0151|consensus 95.1 0.037 7.9E-07 53.1 5.1 62 70-132 189-254 (877)
109 KOG4211|consensus 94.8 0.14 3.1E-06 47.2 8.0 58 71-132 26-83 (510)
110 KOG2416|consensus 94.6 0.026 5.5E-07 53.2 2.8 80 27-138 443-525 (718)
111 PF11767 SET_assoc: Histone ly 94.5 0.16 3.5E-06 34.6 6.0 52 69-129 14-65 (66)
112 KOG4211|consensus 94.5 0.1 2.3E-06 48.1 6.4 69 71-141 119-188 (510)
113 KOG1456|consensus 94.0 0.29 6.2E-06 44.1 8.0 60 71-135 138-199 (494)
114 KOG1677|consensus 93.8 0.033 7.1E-07 48.6 1.7 27 1-27 178-204 (332)
115 KOG0120|consensus 93.7 0.056 1.2E-06 50.2 3.1 62 70-132 304-366 (500)
116 KOG4210|consensus 93.5 0.029 6.3E-07 48.6 0.9 68 65-134 195-263 (285)
117 KOG1995|consensus 93.1 0.085 1.8E-06 46.8 3.2 62 71-133 82-152 (351)
118 PF15519 RBM39linker: linker b 93.0 0.061 1.3E-06 37.4 1.7 19 23-41 49-67 (73)
119 KOG1456|consensus 93.0 0.49 1.1E-05 42.7 7.7 58 71-133 304-361 (494)
120 KOG1190|consensus 92.8 0.25 5.3E-06 44.9 5.7 71 71-146 166-243 (492)
121 KOG1457|consensus 92.3 0.96 2.1E-05 38.3 8.2 37 96-132 76-115 (284)
122 KOG4206|consensus 92.3 0.76 1.7E-05 38.5 7.6 51 78-132 168-219 (221)
123 KOG4307|consensus 91.3 0.4 8.7E-06 46.3 5.4 61 70-131 882-943 (944)
124 KOG0128|consensus 89.1 0.12 2.5E-06 50.5 0.0 69 65-134 746-814 (881)
125 PF07576 BRAP2: BRCA1-associat 88.5 1.6 3.5E-05 32.6 5.8 43 81-124 39-81 (110)
126 PF14608 zf-CCCH_2: Zinc finge 87.3 0.44 9.5E-06 24.5 1.5 19 2-23 1-19 (19)
127 KOG4574|consensus 86.5 0.57 1.2E-05 46.0 2.9 92 71-177 314-408 (1007)
128 KOG4676|consensus 86.0 1.3 2.8E-05 40.2 4.7 60 71-132 23-86 (479)
129 KOG1040|consensus 85.5 0.25 5.5E-06 43.6 0.0 28 135-162 73-100 (325)
130 KOG0112|consensus 85.3 0.74 1.6E-05 45.4 3.1 55 72-132 472-528 (975)
131 KOG1457|consensus 84.3 2.2 4.7E-05 36.2 5.0 50 69-122 224-273 (284)
132 KOG2494|consensus 84.2 0.35 7.7E-06 42.6 0.3 28 136-163 33-62 (331)
133 KOG3152|consensus 84.1 0.71 1.5E-05 39.6 2.1 54 72-126 91-157 (278)
134 KOG2135|consensus 84.1 0.68 1.5E-05 42.8 2.1 60 68-134 386-445 (526)
135 KOG2591|consensus 81.3 2.8 6E-05 39.7 4.9 57 71-133 191-250 (684)
136 KOG1365|consensus 80.1 3.3 7.1E-05 37.6 4.8 51 65-116 171-225 (508)
137 KOG0128|consensus 78.6 0.35 7.7E-06 47.3 -1.8 76 54-130 657-742 (881)
138 KOG1040|consensus 78.0 1.2 2.6E-05 39.5 1.4 35 2-38 107-141 (325)
139 PF03880 DbpA: DbpA RNA bindin 77.3 6.7 0.00015 26.7 4.8 43 82-132 32-74 (74)
140 KOG0115|consensus 76.9 2.4 5.3E-05 36.3 3.0 52 72-124 48-99 (275)
141 PF03439 Spt5-NGN: Early trans 76.2 3.9 8.4E-05 28.8 3.5 37 82-122 33-69 (84)
142 KOG1039|consensus 76.0 1 2.2E-05 40.1 0.5 25 1-26 9-33 (344)
143 PF08675 RNA_bind: RNA binding 75.6 7.7 0.00017 27.9 4.8 41 71-119 24-64 (87)
144 KOG2202|consensus 72.6 1.6 3.6E-05 37.2 0.9 24 2-26 154-177 (260)
145 KOG4213|consensus 72.3 9.2 0.0002 31.3 5.0 61 66-130 120-182 (205)
146 KOG2185|consensus 70.8 1.9 4.2E-05 39.2 1.0 21 2-23 142-162 (486)
147 KOG1677|consensus 69.1 2.1 4.6E-05 37.2 0.8 27 1-27 133-160 (332)
148 KOG0153|consensus 65.2 3 6.4E-05 37.3 1.0 32 139-170 161-192 (377)
149 KOG0129|consensus 64.9 26 0.00056 32.9 7.0 70 12-112 243-321 (520)
150 KOG0804|consensus 64.2 10 0.00023 35.0 4.3 45 80-125 99-143 (493)
151 KOG4307|consensus 63.9 2.4 5.1E-05 41.2 0.1 63 71-134 450-513 (944)
152 KOG4019|consensus 62.9 11 0.00024 30.8 3.7 39 96-134 50-89 (193)
153 PRK08559 nusG transcription an 62.0 29 0.00062 27.1 6.0 47 68-119 21-68 (153)
154 KOG1595|consensus 58.2 5.6 0.00012 37.3 1.5 22 1-23 237-258 (528)
155 KOG1763|consensus 57.5 4.7 0.0001 35.3 0.8 31 136-166 89-119 (343)
156 PF10309 DUF2414: Protein of u 56.6 38 0.00082 22.7 5.0 18 100-117 45-62 (62)
157 KOG0112|consensus 55.5 3.3 7.1E-05 41.1 -0.5 61 71-132 388-448 (975)
158 COG5252 Uncharacterized conser 53.8 4.1 8.9E-05 34.7 -0.1 32 138-169 84-115 (299)
159 COG5152 Uncharacterized conser 51.5 6.2 0.00014 32.8 0.6 33 1-33 142-174 (259)
160 PF15513 DUF4651: Domain of un 46.5 68 0.0015 21.6 4.9 24 66-90 5-28 (62)
161 PRK14548 50S ribosomal protein 45.7 79 0.0017 22.4 5.5 46 70-117 35-81 (84)
162 PRK13817 ribosome-binding fact 44.1 44 0.00096 25.1 4.2 76 59-138 10-91 (119)
163 KOG4660|consensus 41.8 39 0.00085 32.0 4.3 42 80-121 413-455 (549)
164 KOG0129|consensus 41.4 1.2E+02 0.0026 28.6 7.3 38 79-116 394-432 (520)
165 COG3309 VapD Uncharacterized v 41.2 59 0.0013 23.7 4.2 41 65-117 21-61 (96)
166 PF02714 DUF221: Domain of unk 41.1 30 0.00064 29.7 3.3 33 100-134 1-33 (325)
167 PF11823 DUF3343: Protein of u 40.1 35 0.00076 23.0 2.9 41 98-143 2-42 (73)
168 COG5063 CTH1 CCCH-type Zn-fing 39.9 15 0.00032 32.5 1.1 23 2-24 276-298 (351)
169 PF07530 PRE_C2HC: Associated 38.0 55 0.0012 22.1 3.6 59 70-132 2-62 (68)
170 smart00596 PRE_C2HC PRE_C2HC d 34.5 57 0.0012 22.4 3.1 58 71-132 3-62 (69)
171 COG0858 RbfA Ribosome-binding 32.6 1.1E+02 0.0025 22.9 4.9 75 60-138 13-95 (118)
172 KOG1595|consensus 32.4 24 0.00051 33.3 1.3 25 137-161 234-258 (528)
173 COG5470 Uncharacterized conser 32.4 1.5E+02 0.0032 21.7 5.2 46 64-114 17-70 (96)
174 PF03467 Smg4_UPF3: Smg-4/UPF3 32.2 51 0.0011 26.4 3.1 45 94-138 52-101 (176)
175 COG5084 YTH1 Cleavage and poly 32.2 25 0.00053 30.7 1.3 37 2-39 4-44 (285)
176 KOG1134|consensus 31.9 99 0.0021 30.5 5.5 44 96-139 304-347 (728)
177 PF08803 ydhR: Putative mono-o 31.6 2E+02 0.0043 21.1 5.8 71 59-136 14-87 (97)
178 KOG2185|consensus 31.5 32 0.0007 31.6 1.9 40 125-164 126-165 (486)
179 TIGR00405 L26e_arch ribosomal 31.4 1.8E+02 0.0039 22.0 6.0 33 83-119 28-60 (145)
180 KOG1999|consensus 31.2 91 0.002 31.7 5.1 46 82-132 199-244 (1024)
181 KOG2193|consensus 31.2 6.6 0.00014 36.2 -2.4 68 70-139 94-161 (584)
182 TIGR03636 L23_arch archaeal ri 30.4 1.9E+02 0.0041 20.1 5.5 45 71-117 29-74 (77)
183 KOG4849|consensus 30.0 57 0.0012 29.6 3.2 71 70-141 95-171 (498)
184 KOG1492|consensus 29.9 23 0.00049 30.1 0.7 27 138-164 232-258 (377)
185 KOG1763|consensus 29.0 17 0.00037 31.9 -0.2 25 1-26 93-117 (343)
186 COG0018 ArgS Arginyl-tRNA synt 28.2 2.7E+02 0.0059 26.7 7.6 61 67-134 58-126 (577)
187 COG5507 Uncharacterized conser 28.1 81 0.0018 23.4 3.2 39 79-117 47-86 (117)
188 KOG2494|consensus 28.1 27 0.00058 31.0 0.8 21 142-163 74-94 (331)
189 PRK13818 ribosome-binding fact 27.6 1.7E+02 0.0036 22.0 5.0 74 60-137 11-92 (121)
190 PRK00521 rbfA ribosome-binding 27.3 1.6E+02 0.0034 21.9 4.8 74 60-137 14-94 (120)
191 KOG0105|consensus 27.0 1.5E+02 0.0032 24.6 4.9 47 71-124 131-177 (241)
192 TIGR00082 rbfA ribosome-bindin 26.3 1.7E+02 0.0038 21.6 4.9 53 82-137 34-92 (114)
193 PF13820 Nucleic_acid_bd: Puta 25.6 3E+02 0.0065 21.6 6.3 54 60-119 14-67 (149)
194 COG5152 Uncharacterized conser 25.4 29 0.00063 28.9 0.5 65 99-163 85-166 (259)
195 smart00738 NGN In Spt5p, this 24.7 85 0.0018 22.0 2.9 23 97-119 59-81 (106)
196 PRK11118 putative monooxygenas 24.2 3E+02 0.0064 20.3 5.6 72 59-137 17-91 (100)
197 KOG2333|consensus 22.5 38 0.00083 32.0 0.8 27 1-27 115-143 (614)
198 COG5084 YTH1 Cleavage and poly 21.0 59 0.0013 28.4 1.6 24 1-25 105-128 (285)
199 KOG4791|consensus 20.3 44 0.00095 31.5 0.7 26 1-27 119-144 (667)
No 1
>KOG2202|consensus
Probab=100.00 E-value=2.8e-54 Score=358.59 Aligned_cols=186 Identities=70% Similarity=1.207 Sum_probs=170.7
Q ss_pred CCccccceecCcCCCCCCCCCCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKY 80 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kf 80 (189)
|+|+||+||||||||++||++|.+|+.|+||+|+|||.+|+......|++.. .+++++++..|++|+|||+.|++.||
T Consensus 16 v~c~fy~k~gacR~gdrcsR~h~kpt~s~t~ll~nmyq~P~~~~~~~d~~~~--~~~de~~q~~~defyEd~f~E~~~ky 93 (260)
T KOG2202|consen 16 VNCSFYFKIGACRHGDRCSRLHEKPTFSQTVLLKNMYQNPENSWERRDAQGQ--FLTDEELQRHEDEFYEDVFTELEDKY 93 (260)
T ss_pred cccchHHhhcccccccHHHHhhcccccchHHHHHHHHhCCCCCchhhhhccc--cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999876553443322 67889999999999999999995599
Q ss_pred CCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccccCCCCCCCCCceee
Q psy12245 81 GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMH 160 (189)
Q Consensus 81 G~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~~~~~~~c~rg~~Cn~~h 160 (189)
|+|+++.|+.|..+|++|+|||+|..+++|++|++.||||||+|++|+++++|+++|++++|++|..+.|++|+.|||||
T Consensus 94 gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~~C~rG~~CnFmH 173 (260)
T KOG2202|consen 94 GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERTECSRGGACNFMH 173 (260)
T ss_pred hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccccCCCCCcCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHhcccccc-cccccCCC
Q psy12245 161 LKPISRELRRYLYSRRKRSS-RRSRSRSR 188 (189)
Q Consensus 161 ~~~~~~~l~~~l~~~~~~~~-~~~~~~~~ 188 (189)
++.+|+.|...|+..+.+.. .+++++++
T Consensus 174 ~k~~sr~L~r~l~~~~~~~~~~~sra~~~ 202 (260)
T KOG2202|consen 174 VKRLSRSLRRELYGRQRKRYPRRSRARAR 202 (260)
T ss_pred hhhhhHHHHHHhhhhhhcccccccccccc
Confidence 99999999999999877664 44454443
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.84 E-value=1.2e-20 Score=175.91 Aligned_cols=95 Identities=22% Similarity=0.418 Sum_probs=84.1
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC-----CCee
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLV 97 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~-----~~~~ 97 (189)
.+|..|+||+|+|||++.+ ++ ++|++||++|| +|||.|++|.|+.+.. +|..
T Consensus 509 ~rp~~S~vVvL~NMv~~~e-------------------ld---edl~eDV~eEC-~K~G~V~~v~I~~~~~~~~~~~~~~ 565 (612)
T TIGR01645 509 MRTNRSNVIVLRNMVTPQD-------------------ID---EFLEGEIREEC-GKFGVVDRVIINFEKQGEEEDAEII 565 (612)
T ss_pred cCCCCCCEEEEeCCCChHH-------------------hH---HHHHHHHHHHh-hcCceeEEEEEecCCCCccccccce
Confidence 5789999999999998632 32 45889999999 7999999999998542 3678
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 98 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 98 G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
|+|||+|.+.++|.+|++.||||||+||+|.|+||+..+|..+
T Consensus 566 g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~~~ 608 (612)
T TIGR01645 566 VKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFDHA 608 (612)
T ss_pred EEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhhcc
Confidence 9999999999999999999999999999999999999999765
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.77 E-value=1.6e-18 Score=156.05 Aligned_cols=98 Identities=27% Similarity=0.468 Sum_probs=85.8
Q ss_pred CCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEE
Q psy12245 22 HNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vf 101 (189)
|..+..+++|+|.|||++.. ++.+++|.+|++||++|| ++||.|++|.|..+ ...|+||
T Consensus 356 ~~~~~~~~~l~l~n~~~~~~-----------------~~~~~~~~~~~~dv~~e~-~k~G~v~~v~v~~~---~~~G~~f 414 (457)
T TIGR01622 356 TNNNLATTCLVLSNMFDPAT-----------------EEEPNFDNEILDDVKEEC-SKYGGVVHIYVDTK---NSAGKIY 414 (457)
T ss_pred ccCCCCCcEEEEecCCCCcc-----------------cccchHHHHHHHHHHHHH-HhcCCeeEEEEeCC---CCceeEE
Confidence 44567889999999998632 123458899999999999 69999999999865 3589999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
|+|.+.++|.+|++.|||++|+||.|.|.|++++.|...
T Consensus 415 V~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~ 453 (457)
T TIGR01622 415 LKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMS 453 (457)
T ss_pred EEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhh
Confidence 999999999999999999999999999999999998764
No 4
>KOG0147|consensus
Probab=99.76 E-value=4.2e-19 Score=160.63 Aligned_cols=93 Identities=31% Similarity=0.519 Sum_probs=82.1
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..|+|++|.|||++... |+ ..|-.+|.|||.||| +|||+|.+|.|.++. .|+|||+|.
T Consensus 441 i~t~C~lL~nMFdpste--------------te---~n~d~eI~edV~Eec-~k~g~v~hi~vd~ns----~g~VYvrc~ 498 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTE--------------TE---PNWDQEIREDVIEEC-GKHGKVCHIFVDKNS----AGCVYVRCP 498 (549)
T ss_pred CccHHHHHhhcCCcccc--------------cC---cchhhHHHHHHHHHH-HhcCCeeEEEEccCC----CceEEEecC
Confidence 47899999999998532 11 235678999999999 799999999999984 599999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
+.++|..|+++||||||+||.|+|.|.++..|...
T Consensus 499 s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~ 533 (549)
T KOG0147|consen 499 SAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSK 533 (549)
T ss_pred cHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhh
Confidence 99999999999999999999999999999998754
No 5
>KOG1548|consensus
Probab=99.71 E-value=3.2e-17 Score=141.91 Aligned_cols=96 Identities=28% Similarity=0.602 Sum_probs=82.1
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
.++...+||+|+|||++.++.. +. +...++.+||+++| +|||.|.+|.|..+ |+.|.|-|
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~-------------~~---~l~~dlkedl~eec-~K~G~v~~vvv~d~---hPdGvvtV 319 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEK-------------NP---DLLNDLKEDLTEEC-EKFGQVRKVVVYDR---HPDGVVTV 319 (382)
T ss_pred ccccCCcEEEeeecCCHHHhcc-------------CH---HHHHHHHHHHHHHH-HHhCCcceEEEecc---CCCceeEE
Confidence 4556779999999999876532 12 24568999999999 69999999999987 78999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEecc-Cccch
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSP-VTDFR 138 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~-~~~f~ 138 (189)
.|.+.++|..|++.|+||||+||+|+|++++ .++|.
T Consensus 320 ~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 320 SFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQ 356 (382)
T ss_pred EeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceee
Confidence 9999999999999999999999999999984 45553
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.70 E-value=4.9e-17 Score=148.08 Aligned_cols=97 Identities=27% Similarity=0.406 Sum_probs=82.8
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC----CCeeeEEE
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVY 101 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~----~~~~G~vf 101 (189)
..+++|.|.||++..++. .+++|+++.+||+++| ++||.|++|.|+.+.. ....|+||
T Consensus 407 ~~s~v~~l~N~~~~~~l~-----------------~d~~~~~~~edl~~~f-~~~G~v~~v~i~~~~~~~~~~~~~G~~f 468 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLM-----------------DDEEYEEIYEDVKTEF-SKYGPLINIVIPRPNGDRNSTPGVGKVF 468 (509)
T ss_pred CCceEEEeccCCchhHhc-----------------CcchHHHHHHHHHHHH-HhcCCeeEEEeeccCcCCCcCCCcceEE
Confidence 357899999999764431 1246889999999999 6999999999997531 34579999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
|+|++.++|.+|+..|||++|+||+|.|.|+++..|..+
T Consensus 469 V~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~~~ 507 (509)
T TIGR01642 469 LEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYKAG 507 (509)
T ss_pred EEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhhcc
Confidence 999999999999999999999999999999999998754
No 7
>KOG0120|consensus
Probab=99.66 E-value=1.5e-16 Score=144.86 Aligned_cols=78 Identities=27% Similarity=0.532 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEEEeeC-CC---CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy12245 62 QEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LG---DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 137 (189)
Q Consensus 62 ~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~-~~---~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f 137 (189)
+++|++|+|||+.|| ++||.|.+|.|+.+ .. ....|+|||+|.+.++|++|+.+|+||.|+||+|.++|+++++|
T Consensus 416 d~EyeeIlEdvr~ec-~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 416 DEEYEEILEDVRTEC-AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred hHHHHHHHHHHHHHh-cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 458999999999999 89999999999987 33 35789999999999999999999999999999999999999999
Q ss_pred hhh
Q psy12245 138 REA 140 (189)
Q Consensus 138 ~~~ 140 (189)
+.+
T Consensus 495 ~~r 497 (500)
T KOG0120|consen 495 HAR 497 (500)
T ss_pred hcc
Confidence 764
No 8
>smart00361 RRM_1 RNA recognition motif.
Probab=99.59 E-value=7.9e-15 Score=100.77 Aligned_cols=64 Identities=44% Similarity=0.773 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhcCCCeeEEE-EeeC-CC--CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEE
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMN-VCDN-LG--DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 130 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~-i~~~-~~--~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~ 130 (189)
++|++.+.++| ++||+|.+|. |..+ .+ ++++|++||+|.+.++|.+|++.|||++|+||+|.|+
T Consensus 3 ~~l~~~~~~~~-~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 3 EDFEREFSEEE-EYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hhHHHHHHHHH-HhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 46778899999 6999999995 4433 23 6889999999999999999999999999999999873
No 9
>KOG0124|consensus
Probab=99.52 E-value=3e-14 Score=124.69 Aligned_cols=95 Identities=21% Similarity=0.445 Sum_probs=81.1
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC-----CCee
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLV 97 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~-----~~~~ 97 (189)
.+|..|.+|+|+||.++.++ + ++++.+|.+|| +|||.|.+|.|..... ...-
T Consensus 441 mR~~~S~VivLRNMV~P~Di-------------------D---e~LegEi~EEC-gKfG~V~rViI~nekq~e~edaeii 497 (544)
T KOG0124|consen 441 MRKQESTVIVLRNMVDPKDI-------------------D---EDLEGEITEEC-GKFGAVNRVIIYNEKQGEEEDAEII 497 (544)
T ss_pred hccccCcEEEEeccCChhhh-------------------h---hHHHHHHHHHH-hcccceeEEEEEecccccccchhhh
Confidence 46889999999999998543 1 36778999999 8999999999986542 1345
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 98 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 98 G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
..+||+|+...++.+|.++||||||+||.+.++.++...|..+
T Consensus 498 VKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~~ 540 (544)
T KOG0124|consen 498 VKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDNS 540 (544)
T ss_pred heeeeeechhhHHHHHHHhhccceecCceeehhhhhhhccccc
Confidence 6899999999999999999999999999999999998877543
No 10
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.48 E-value=2.3e-13 Score=89.15 Aligned_cols=56 Identities=30% Similarity=0.636 Sum_probs=50.5
Q ss_pred HHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 72 VFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 72 I~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|++.| ++||+|++|.+..+. .|.|||+|.+.++|.+|++.|||++|+|++|.|+|+
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHh-CCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46788 799999999998763 599999999999999999999999999999999985
No 11
>KOG1996|consensus
Probab=99.47 E-value=5.9e-14 Score=119.77 Aligned_cols=91 Identities=29% Similarity=0.500 Sum_probs=76.4
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC--CCeeeEEEEEe
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG--DHLVGNVYIKF 104 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~--~~~~G~vfV~F 104 (189)
..++|+|+||....+ .+ ++|++++++|| +|||+|..|.|....+ .+-...+||+|
T Consensus 280 ptkvlllrnmVg~ge-------------------vd---~elede~keEc-eKyg~V~~viifeip~~p~deavRiFveF 336 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGE-------------------VD---EELEDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEF 336 (378)
T ss_pred chHHHHhhhhcCccc-------------------cc---HHHHHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeee
Confidence 346688888887533 22 46788999999 5999999999986542 45678899999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
+..++|.+|+-.||||+|+||.+.|.|+++.+|...
T Consensus 337 ~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~~ 372 (378)
T KOG1996|consen 337 ERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSNL 372 (378)
T ss_pred ccHHHHHHHHHhcCCceecceeeeheeccHHhhhhh
Confidence 999999999999999999999999999999999753
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.40 E-value=2.3e-12 Score=112.11 Aligned_cols=64 Identities=14% Similarity=0.302 Sum_probs=58.0
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
+|++.| ++||.|++++|+.+. ++..+|++||+|.+.++|.+|+..|||.+|+||+|.|+|....
T Consensus 285 ~L~~~F-~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 285 VLWQLF-GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred HHHHHH-HhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 566777 799999999999875 6788999999999999999999999999999999999998543
No 13
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.35 E-value=1.2e-11 Score=96.60 Aligned_cols=63 Identities=14% Similarity=0.294 Sum_probs=57.1
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+||++.| ++||+|.++.|+.+. +++.+|++||+|++.++|++|++.|||..++|++|.|++..
T Consensus 49 ~~L~~~F-~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 49 ASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred HHHHHHH-hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 3677788 699999999998764 56889999999999999999999999999999999999974
No 14
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.32 E-value=2.1e-11 Score=81.55 Aligned_cols=57 Identities=32% Similarity=0.542 Sum_probs=51.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~ 128 (189)
||++.| ++||.|..+.+..+..+...|++||+|++.++|.+|++.|||..++|++|+
T Consensus 14 ~l~~~f-~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 14 ELRDFF-SQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHH-HTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHH-HHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 566677 799999999999876678899999999999999999999999999999985
No 15
>KOG0114|consensus
Probab=99.19 E-value=1.1e-10 Score=86.33 Aligned_cols=90 Identities=22% Similarity=0.367 Sum_probs=72.6
Q ss_pred CCCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeE
Q psy12245 20 RIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGN 99 (189)
Q Consensus 20 ~~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~ 99 (189)
..-..|...+.|.|+|+.-. +|.+| +.+.| ++||+|..|+|-... ..+|.
T Consensus 10 ~~rlppevnriLyirNLp~~----------------ITsee-----------mydlF-Gkyg~IrQIRiG~~k--~TrGT 59 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFK----------------ITSEE-----------MYDLF-GKYGTIRQIRIGNTK--ETRGT 59 (124)
T ss_pred CCCCChhhheeEEEecCCcc----------------ccHHH-----------HHHHh-hcccceEEEEecCcc--CcCce
Confidence 33456778899999999763 45443 44556 899999999997543 45899
Q ss_pred EEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCccchh
Q psy12245 100 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFRE 139 (189)
Q Consensus 100 vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~-~~~~f~~ 139 (189)
|||.|++..+|.+|+..|+|..+++|.+.|-|+ +...|+.
T Consensus 60 AFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~~~~ 100 (124)
T KOG0114|consen 60 AFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDAFKL 100 (124)
T ss_pred EEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHHHHH
Confidence 999999999999999999999999999999998 4555554
No 16
>KOG0107|consensus
Probab=99.16 E-value=4.1e-11 Score=95.87 Aligned_cols=59 Identities=29% Similarity=0.404 Sum_probs=54.4
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||..+| ++||+|.+|+|..+ +.|+|||+|+++.+|++|+..|+|+.+.|..|.|+++.-
T Consensus 26 eLE~~F-~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 26 ELERAF-SKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred HHHHHH-HhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 566678 79999999999997 489999999999999999999999999999999999843
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.15 E-value=3e-10 Score=98.82 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=66.5
Q ss_pred CCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecC
Q psy12245 28 SQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRR 106 (189)
Q Consensus 28 S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~ 106 (189)
..+|++.||.. .++++ ||++.| ++||+|.+|.|..+. ++..+|++||+|.+
T Consensus 3 ~~~l~V~nLp~----------------~~~e~-----------~l~~~F-~~~G~i~~v~i~~d~~~g~s~g~afV~f~~ 54 (352)
T TIGR01661 3 KTNLIVNYLPQ----------------TMTQE-----------EIRSLF-TSIGEIESCKLVRDKVTGQSLGYGFVNYVR 54 (352)
T ss_pred CcEEEEeCCCC----------------CCCHH-----------HHHHHH-HccCCEEEEEEEEcCCCCccceEEEEEECc
Confidence 56888999854 24444 566677 799999999999764 46789999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.++|.+|++.|||..+.|++|.++++.
T Consensus 55 ~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 55 PEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred HHHHHHHHhhcccEEECCeeEEEEeec
Confidence 999999999999999999999999873
No 18
>KOG0153|consensus
Probab=99.14 E-value=2e-10 Score=100.06 Aligned_cols=121 Identities=24% Similarity=0.384 Sum_probs=86.9
Q ss_pred CccccceecCcCCCCCCCCCCCCCCCCCeEEecCCCCCccCCccC------------------CCCCccccCCChHHHHH
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKS------------------ADGSHLISNVTDEEMQE 63 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~~P~~S~~v~l~Nm~~~~~~~~~~------------------~~~~~~~~~~~~~e~~~ 63 (189)
.|+||.| |.|-.|..|+++|.+| ..--+.+.|+-++....+++ +|.+.. .+--.-+..
T Consensus 163 Icsf~v~-geckRG~ec~yrhEkp-~d~~L~~qni~dryyg~ndPva~kil~ra~~~~~lepPeD~~I~--tLyIg~l~d 238 (377)
T KOG0153|consen 163 ICSFFVK-GECKRGAECPYRHEKP-PDDPLSLQNIKDRYYGLNDPVALKILNRAGSAGTLEPPEDTSIK--TLYIGGLND 238 (377)
T ss_pred cccceee-ccccccccccccccCC-CCcchhhcccccccccccChHHHHHHhhcccccccCCCccccee--EEEeccccc
Confidence 6999999 8999999999999999 55557778877754222111 111100 000000000
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh-CCCEeCCeeEEEEeccC
Q psy12245 64 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL-NNRWFGGRPVYAELSPV 134 (189)
Q Consensus 64 ~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~L-nGr~f~GR~I~v~~~~~ 134 (189)
.-++.||+..| .+||+|+.|.+... +|.|||+|.+.++|+.|...+ |.-..+|+.|.+.|...
T Consensus 239 --~v~e~dIrdhF-yqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 --EVLEQDIRDHF-YQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred --chhHHHHHHHH-hhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 35567899999 69999999999865 789999999999999877655 66666999999997755
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.11 E-value=5e-10 Score=99.00 Aligned_cols=62 Identities=15% Similarity=0.326 Sum_probs=55.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||++.| ++||+|++|+|+.+. ++..+|++||+|.++++|.+|++.|||..+.+++|.|.++.
T Consensus 123 ~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 123 ELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred HHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 566777 699999999998764 56789999999999999999999999999999999999874
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.11 E-value=6.2e-10 Score=75.24 Aligned_cols=58 Identities=28% Similarity=0.471 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~ 128 (189)
+||++.| +.||.|..|.+..+..+..+|.|||+|.+.++|.+|++.++|.+++|+.|.
T Consensus 13 ~~l~~~f-~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 13 EDLRNFF-SRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHHHC-TTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHH-HhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 4788888 799999999999876577899999999999999999999999999999984
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.10 E-value=1.1e-09 Score=71.83 Aligned_cols=58 Identities=36% Similarity=0.599 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEE
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 130 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~ 130 (189)
||++.| .+||+|..+.+..+. +.+.|.+||+|.+.++|..|++.|+|..|+|+.|.|+
T Consensus 15 ~l~~~~-~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 15 DLKELF-SKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred HHHHHH-HhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 566677 699999999998765 5678999999999999999999999999999999863
No 22
>KOG4207|consensus
Probab=99.09 E-value=8.8e-11 Score=96.34 Aligned_cols=67 Identities=19% Similarity=0.426 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 65 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 65 ~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|...-+||+..| +|||.|-+|.|+.+. +...+||+||.|....+|++|+.+|+|..++||.|.|+++
T Consensus 23 yRTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 23 YRTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 445556899999 599999999999875 5688999999999999999999999999999999999886
No 23
>smart00360 RRM RNA recognition motif.
Probab=99.07 E-value=9.4e-10 Score=71.87 Aligned_cols=60 Identities=32% Similarity=0.544 Sum_probs=52.9
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEE
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 130 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~ 130 (189)
+||++.| ++||.|..+.+..+. ++..+|++||+|.+.++|..|++.|+|..++|+.|.++
T Consensus 11 ~~l~~~f-~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 11 EELRELF-SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHH-HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 3677778 699999999998765 36778999999999999999999999999999998863
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.07 E-value=8.7e-10 Score=102.26 Aligned_cols=64 Identities=25% Similarity=0.417 Sum_probs=58.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
+|++.| ++||.|.++.|..+..+..+|++||+|.+.++|.+|+..|||++|+|++|.|.++...
T Consensus 301 ~L~~~F-~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 301 KLRELF-SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHHH-HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 677788 6999999999998877788999999999999999999999999999999999998653
No 25
>KOG0127|consensus
Probab=99.06 E-value=5e-10 Score=102.38 Aligned_cols=70 Identities=23% Similarity=0.455 Sum_probs=64.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCccchhhh
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFREAC 141 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~-~~~~f~~~~ 141 (189)
||+..| ++||.|.+|.||+...+.+.||+||+|....+|.+|++.|||..++||+|-|+|+ +.+.|..+.
T Consensus 133 dLk~vF-s~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta 203 (678)
T KOG0127|consen 133 DLKNVF-SNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTA 203 (678)
T ss_pred HHHHHH-hhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccc
Confidence 677788 8999999999998888888899999999999999999999999999999999998 777787643
No 26
>KOG0148|consensus
Probab=99.05 E-value=3.4e-10 Score=95.97 Aligned_cols=104 Identities=17% Similarity=0.329 Sum_probs=76.9
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhc-ccc
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCR-QYE 146 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~-~~~ 146 (189)
.|+|++.| .+||+|.+.+|.++. +.+++|+.||.|.+.++|+.||..|||.|+++|.|+..++..+...+..-. .|+
T Consensus 76 ~e~lr~aF-~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfd 154 (321)
T KOG0148|consen 76 NEKLREAF-APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFD 154 (321)
T ss_pred hHHHHHHh-ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHH
Confidence 35789999 799999999999875 578999999999999999999999999999999999999966554332222 122
Q ss_pred cC-CCCCCCCCceeee---c-CCCHHHHHHHHh
Q psy12245 147 MG-ECTRSGFCNFMHL---K-PISRELRRYLYS 174 (189)
Q Consensus 147 ~~-~c~rg~~Cn~~h~---~-~~~~~l~~~l~~ 174 (189)
.- .=+..+.|.. ++ . .+++++++++|.
T Consensus 155 eV~NQssp~NtsV-Y~G~I~~~lte~~mr~~Fs 186 (321)
T KOG0148|consen 155 EVYNQSSPDNTSV-YVGNIASGLTEDLMRQTFS 186 (321)
T ss_pred HHhccCCCCCceE-EeCCcCccccHHHHHHhcc
Confidence 11 1112233322 22 2 378888888875
No 27
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.03 E-value=2.8e-09 Score=97.65 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=53.7
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|++.| ++||.|.+|+|..+. +|++||+|.+.++|..|++.|||..+.|++|.|.++..
T Consensus 292 ~L~~lF-~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 292 RLFNLF-CVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred HHHHHH-HhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 577777 799999999998863 79999999999999999999999999999999999743
No 28
>KOG0122|consensus
Probab=99.00 E-value=2.1e-09 Score=90.02 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 68 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 68 ~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
-++||.+.| .+||.|..|.|.++. ++..+|++||.|.+.++|.+|+..|||.-|+.-.|.|+|+.
T Consensus 202 ~E~dL~eLf-~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 202 REDDLEELF-RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ChhHHHHHh-hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 344677777 699999999999885 58899999999999999999999999999999999999984
No 29
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.98 E-value=3.8e-09 Score=89.71 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=64.0
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
..++|.+.|+-.. .+++ ||++.| +.||+|++|.|+.+. ..+|++||+|++
T Consensus 3 ~~rtVfVgNLs~~----------------tTE~-----------dLrefF-S~~G~I~~V~I~~d~--~~~GfAFVtF~d 52 (260)
T PLN03120 3 QVRTVKVSNVSLK----------------ATER-----------DIKEFF-SFSGDIEYVEMQSEN--ERSQIAYVTFKD 52 (260)
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEeecC--CCCCEEEEEeCc
Confidence 3578888888753 3343 566677 799999999998774 357999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+++|..|+. |||..+.||.|.+..++.
T Consensus 53 ~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 53 PQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred HHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 999999995 999999999999999753
No 30
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=5.9e-09 Score=68.69 Aligned_cols=61 Identities=34% Similarity=0.615 Sum_probs=54.1
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~ 131 (189)
++|++.| +.||.|..+.+.........|.+||+|.+.++|..|++.++|..|+|+.|.|.+
T Consensus 14 ~~i~~~~-~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 14 EDLRELF-SKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHH-HhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 3677778 699999999999875556789999999999999999999999999999999864
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.95 E-value=5.9e-09 Score=92.20 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=56.6
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEeccCc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVT 135 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~G--R~I~v~~~~~~ 135 (189)
||++.| ++||+|+.+.|..+. +++.+|++||+|++.++|++|++.|||..+.| ++|.|.++.+.
T Consensus 209 ~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 209 QLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 677778 799999999998764 57789999999999999999999999999977 78999998654
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.94 E-value=7.6e-09 Score=93.30 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=66.4
Q ss_pred CCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecC
Q psy12245 28 SQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRR 106 (189)
Q Consensus 28 S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~ 106 (189)
+.+|+|.||-.. ++++ ||++.| ++||.|..|.|..+. ++..+|++||+|.+
T Consensus 186 ~~~l~v~nl~~~----------------~te~-----------~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 186 FLKLYVGNLHFN----------------ITEQ-----------ELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred CCEEEEcCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 578888888642 4443 556677 699999999998765 35789999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.++|.+|++.|||..+.|++|.|.|+..
T Consensus 238 ~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 238 AEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999999753
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.90 E-value=7.9e-09 Score=94.70 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=63.9
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
+|+||.|+|+-.. ++++ ||++.| ++||+|.+|.|... +|++||+|++
T Consensus 1 ps~vv~V~nLp~~----------------~te~-----------~L~~~f-~~fG~V~~v~i~~~-----k~~afVef~~ 47 (481)
T TIGR01649 1 PSPVVHVRNLPQD----------------VVEA-----------DLVEAL-IPFGPVSYVMMLPG-----KRQALVEFED 47 (481)
T ss_pred CccEEEEcCCCCC----------------CCHH-----------HHHHHH-HhcCCeeEEEEECC-----CCEEEEEeCc
Confidence 4899999999863 3443 566777 69999999999864 6999999999
Q ss_pred HHHHHHHHHHh--CCCEeCCeeEEEEeccC
Q psy12245 107 EEDAEKAVNDL--NNRWFGGRPVYAELSPV 134 (189)
Q Consensus 107 ~e~A~~A~~~L--nGr~f~GR~I~v~~~~~ 134 (189)
.++|.+|++.| ||..+.|++|.|.|+..
T Consensus 48 ~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 48 EESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred hHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 99999999974 88999999999999853
No 34
>KOG4206|consensus
Probab=98.90 E-value=5.6e-09 Score=86.34 Aligned_cols=79 Identities=19% Similarity=0.383 Sum_probs=68.6
Q ss_pred CCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCH
Q psy12245 28 SQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE 107 (189)
Q Consensus 28 S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~ 107 (189)
+.||+|.|+-+.-. -+++..-+...| ++||+|.+|...+.. .++|.|||.|.+.
T Consensus 9 n~TlYInnLnekI~-----------------------~~elkrsL~~LF-sqfG~ildI~a~kt~--KmRGQA~VvFk~~ 62 (221)
T KOG4206|consen 9 NGTLYINNLNEKIK-----------------------KDELKRSLYLLF-SQFGKILDISAFKTP--KMRGQAFVVFKET 62 (221)
T ss_pred CceEeehhcccccc-----------------------HHHHHHHHHHHH-HhhCCeEEEEecCCC--CccCceEEEecCh
Confidence 34999999987521 135566788888 799999999998753 7899999999999
Q ss_pred HHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 108 EDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 108 e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+.|..|+++|+|..|-|+++.+.|+
T Consensus 63 ~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 63 EAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred hHHHHHHHHhcCCcccCchhheecc
Confidence 9999999999999999999999998
No 35
>KOG0113|consensus
Probab=98.88 E-value=4.8e-09 Score=90.00 Aligned_cols=76 Identities=21% Similarity=0.410 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec---cCccchh
Q psy12245 64 HYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS---PVTDFRE 139 (189)
Q Consensus 64 ~~~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~---~~~~f~~ 139 (189)
.|+.-+.+|+.|| ++||+|+.|+|+.+ .++.++|+|||+|+++.+-..|.+..+|..++|+.|.|++- .+.-|.-
T Consensus 110 nydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~P 188 (335)
T KOG0113|consen 110 NYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLP 188 (335)
T ss_pred cccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccccccc
Confidence 3566677899999 69999999999988 47899999999999999999999999999999999999986 4555654
Q ss_pred h
Q psy12245 140 A 140 (189)
Q Consensus 140 ~ 140 (189)
.
T Consensus 189 R 189 (335)
T KOG0113|consen 189 R 189 (335)
T ss_pred c
Confidence 3
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.88 E-value=1.6e-08 Score=92.27 Aligned_cols=62 Identities=11% Similarity=0.265 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+|++.| ++||.|..+.|..+. ++..+|++||+|.+.++|..|+..|||..++|+.|.|.++.
T Consensus 311 ~l~~~f-~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 311 QIKELL-ESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred HHHHHH-HhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 667777 699999999998764 46789999999999999999999999999999999999973
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.86 E-value=1.1e-08 Score=96.07 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=54.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+|++.| ++||+|.+|.|..+. +++.+|++||+|.+.++|.+|++.|||..++||.|.|...
T Consensus 123 ~Lr~lF-~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 123 TIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred HHHHHH-HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 566677 699999999998764 5788999999999999999999999999999999999854
No 38
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.85 E-value=1.8e-08 Score=93.52 Aligned_cols=62 Identities=24% Similarity=0.529 Sum_probs=56.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+|++.| ++||+|.+|+|+.+. +++..|++||+|.+.++|++|+..||+..+.|++|.+.|+.
T Consensus 16 ~L~~~F-~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 16 KLYDLF-KPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred HHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 566677 799999999999875 36789999999999999999999999999999999999874
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.84 E-value=1.8e-08 Score=94.39 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=50.2
Q ss_pred HHHHHHhhcC--CCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKY--GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kf--G~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+|++.| ++| |+|++|.+. +|++||+|++.++|.+|++.|||..|+|+.|.|+++.
T Consensus 249 ~L~~~F-~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 249 IIEKSF-SEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred HHHHHH-HhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 567778 699 999999876 5799999999999999999999999999999999994
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.82 E-value=2.9e-08 Score=79.95 Aligned_cols=62 Identities=26% Similarity=0.484 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+|++.| .+||.|..+.|..+. .+..+|++||+|.+.++|..|+..|+|.+|.|+.|.|.+..
T Consensus 131 ~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 131 DLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred HHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 566677 699999999998874 67899999999999999999999999999999999999964
No 41
>KOG0148|consensus
Probab=98.78 E-value=1.7e-08 Score=85.80 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=53.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|+..| +.||.|.+|+|.++ +|++||+|++.|+|..||-.|||....|..|+|.+--+
T Consensus 180 ~mr~~F-s~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 180 LMRQTF-SPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHhc-ccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 566777 89999999999987 89999999999999999999999999999999998633
No 42
>KOG0125|consensus
Probab=98.75 E-value=2e-08 Score=87.19 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=56.1
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
-|++..| .|||+|.+|.|.-|.. .++||.||+|++.+||++|-..|||....||+|.|..+.
T Consensus 111 pDL~aMF-~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 111 PDLRAMF-EKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred ccHHHHH-HhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4788899 5999999999998753 369999999999999999999999999999999998873
No 43
>KOG0121|consensus
Probab=98.74 E-value=3.2e-08 Score=75.95 Aligned_cols=61 Identities=16% Similarity=0.355 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.|.+.| ++.|+|..|.+--+. ...+-|+.||+|.+.++|+.|++.+||..++.|+|.+++-
T Consensus 52 qiyELF-s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 52 QIYELF-SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred HHHHHH-HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 455666 899999999996553 3568999999999999999999999999999999999985
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.73 E-value=5.9e-08 Score=90.92 Aligned_cols=61 Identities=26% Similarity=0.343 Sum_probs=53.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~-GR~I~v~~~ 132 (189)
||++.| ++||+|.+++|+.+.++..+|++||+|.+.++|.+|++.|||..+. |+.|.+..+
T Consensus 74 ~L~~~F-~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 74 ELVPLF-EKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred HHHHHH-HhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 567777 6999999999998877789999999999999999999999999985 787766544
No 45
>KOG0130|consensus
Probab=98.71 E-value=2.2e-08 Score=77.51 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+..++||.+.| +.||+|++|++--+ .++-.+|++.|+|++.++|++|+..|||..+-|..|.|.|+
T Consensus 83 EatEedi~d~F-~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 83 EATEEDIHDKF-ADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred chhHHHHHHHH-hhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35667899999 79999999999755 46788999999999999999999999999999999999996
No 46
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.71 E-value=1.3e-07 Score=79.42 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||++-| +.||+|.+|.|..+. ...|++||+|.++++|..|+ .|||..+.+++|.+.-++
T Consensus 21 dLrefF-S~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 21 DVYDFF-SHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred HHHHHH-HhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 566667 799999999999873 45689999999999999999 599999999999998864
No 47
>KOG0110|consensus
Probab=98.63 E-value=2e-07 Score=87.51 Aligned_cols=101 Identities=15% Similarity=0.229 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEeeCCCC----CeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy12245 64 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGD----HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 139 (189)
Q Consensus 64 ~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~----~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~ 139 (189)
.|++..+++...| .++|.|.++.|.....+ .+.|++||+|.+.++|+.|++.|+|..++|+.|.+.++. .+ .+
T Consensus 524 nf~Tt~e~l~~~F-~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~-~k-~~ 600 (725)
T KOG0110|consen 524 NFDTTLEDLEDLF-SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE-NK-PA 600 (725)
T ss_pred CcccchhHHHHHH-HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc-Cc-cc
Confidence 4788899999999 69999999999865422 245999999999999999999999999999999999997 11 11
Q ss_pred hhhcccccCCCCCCCCCceeeecCCCHHHHHH
Q psy12245 140 ACCRQYEMGECTRSGFCNFMHLKPISRELRRY 171 (189)
Q Consensus 140 ~~c~~~~~~~c~rg~~Cn~~h~~~~~~~l~~~ 171 (189)
+.-+ ..|++...|+=|||+.++-...+.
T Consensus 601 ~~~g----K~~~~kk~~tKIlVRNipFeAt~r 628 (725)
T KOG0110|consen 601 STVG----KKKSKKKKGTKILVRNIPFEATKR 628 (725)
T ss_pred cccc----cccccccccceeeeeccchHHHHH
Confidence 1111 367777779999999987766544
No 48
>KOG0105|consensus
Probab=98.61 E-value=9e-08 Score=77.69 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=63.7
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.++.|++.|+... +-+. ||.+.| .|||.|..|.+.... .+.+++||+|++
T Consensus 5 ~~~~iyvGNLP~d----------------iRek-----------eieDlF-yKyg~i~~ieLK~r~--g~ppfafVeFEd 54 (241)
T KOG0105|consen 5 NSRRIYVGNLPGD----------------IREK-----------EIEDLF-YKYGRIREIELKNRP--GPPPFAFVEFED 54 (241)
T ss_pred ccceEEecCCCcc----------------hhhc-----------cHHHHH-hhhcceEEEEeccCC--CCCCeeEEEecC
Confidence 5788999998763 2222 344455 799999999997653 357899999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
..+|+.||..-+|-.|+|-.|.|+|..-
T Consensus 55 ~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 55 PRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccchhhhhhcccccccCcceEEEEeccC
Confidence 9999999999999999999999999844
No 49
>KOG0144|consensus
Probab=98.58 E-value=1e-07 Score=85.40 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEe-CC--eeEEEEeccCccchhh
Q psy12245 67 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GG--RPVYAELSPVTDFREA 140 (189)
Q Consensus 67 ~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f-~G--R~I~v~~~~~~~f~~~ 140 (189)
..+.||++.| ++||.|+++.|.++..+.++|++||+|++.+-|..|++.|||.+= .| .+|.|.|++..+=+..
T Consensus 136 ~te~evr~iF-s~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 136 CTENEVREIF-SRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred ccHHHHHHHH-HhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 5677999999 799999999999988788999999999999999999999999875 33 6899999976655443
No 50
>KOG0108|consensus
Probab=98.57 E-value=1e-07 Score=86.52 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~ 138 (189)
+++|...| +..|.|.++++..+. +|..+|++|++|.+.++|..|++.|||..|.||+|.|.|....+=+
T Consensus 32 e~~l~~~~-~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~ 101 (435)
T KOG0108|consen 32 EEQLLSIF-SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNA 101 (435)
T ss_pred HHHHHHHH-hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchh
Confidence 34677788 799999999998664 6899999999999999999999999999999999999998655443
No 51
>PLN03213 repressor of silencing 3; Provisional
Probab=98.55 E-value=1.5e-07 Score=85.70 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCH--HHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhccccc
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE--EDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEM 147 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~--e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~~~~~ 147 (189)
+||...| +.||.|.+|.|++.. .+||+||+|.+. .++.+|+..|||..+.||.|+|.-+. ..|.++.-+.|..
T Consensus 25 DDLravF-SeFGsVkdVEIpRET---GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK-P~YLeRLkrERee 99 (759)
T PLN03213 25 DDLLKIF-SPMGTVDAVEFVRTK---GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK-EHYLARLKREWEA 99 (759)
T ss_pred HHHHHHH-HhcCCeeEEEEeccc---CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc-HHHHHHHHHHHHH
Confidence 3677778 799999999999553 399999999987 68999999999999999999999984 3566655555544
Q ss_pred C
Q psy12245 148 G 148 (189)
Q Consensus 148 ~ 148 (189)
.
T Consensus 100 a 100 (759)
T PLN03213 100 A 100 (759)
T ss_pred h
Confidence 3
No 52
>KOG0145|consensus
Probab=98.55 E-value=4.7e-07 Score=76.91 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=56.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+++..| +..|+|+++++.++. .+++-|+.||.|.+++||++|+..|||-.+..+.|.|+|+..
T Consensus 57 E~rSLF-~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 57 ELRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred HHHHHh-hcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 455566 799999999999885 688999999999999999999999999999999999999843
No 53
>KOG0123|consensus
Probab=98.54 E-value=3.7e-07 Score=81.49 Aligned_cols=66 Identities=26% Similarity=0.484 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 139 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~ 139 (189)
+|.+-| +.||+|.+++|..+..+ ++|+ ||+|+++++|.+|+..|||..+.|++|.+........+.
T Consensus 92 ~~~d~f-~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 92 SLYDTF-SEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred HHHHHH-HhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 455566 79999999999988766 8999 999999999999999999999999999998876555544
No 54
>KOG0117|consensus
Probab=98.53 E-value=2.3e-07 Score=83.38 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 67 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 67 ~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
..+|-|+++| ++||+|++|+.+++ ++||.|.+.++|.+|++.|||..++|..|.|.++
T Consensus 271 tTeE~lk~~F-~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 271 TTEETLKKLF-NEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hhHHHHHHHH-HhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 3444577788 79999999999854 8999999999999999999999999999999998
No 55
>KOG0126|consensus
Probab=98.50 E-value=2.5e-08 Score=80.55 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 68 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 68 ~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.+.||...| ++||+|++|.+.++. ++.++||+|+.|++..+..-|+.+|||-.+.||.|.|+-.
T Consensus 48 tEgDil~VF-SqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 48 TEGDILCVF-SQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cCCcEEEEe-eccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 334777788 899999999999885 6899999999999999999999999999999999999864
No 56
>KOG0127|consensus
Probab=98.44 E-value=6.4e-07 Score=82.38 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHh-----CC-CEeCCeeEEEEec
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDL-----NN-RWFGGRPVYAELS 132 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~L-----nG-r~f~GR~I~v~~~ 132 (189)
|..+|+|.++| ++||+|.-+.|+... ++++.|.+||.|.+..+|++||.+. .| -.++||.|.|..+
T Consensus 303 D~tEEel~~~f-skFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 303 DTTEEELKEHF-SKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred cccHHHHHHHH-HhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeec
Confidence 34455777888 799999999998764 6899999999999999999999977 34 7789999999987
No 57
>KOG0111|consensus
Probab=98.43 E-value=1.9e-07 Score=77.57 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=55.9
Q ss_pred HHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 72 VFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 72 I~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
+-..| -.||.|.+|.+|.+. +.+-+|++||+|+..|+|..|+.+||+..+-||.|+|.|+-..+
T Consensus 27 LhaAF-IPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 27 LHAAF-IPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred HHhcc-ccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 44566 699999999999875 35679999999999999999999999999999999999984433
No 58
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.43 E-value=4.4e-07 Score=79.45 Aligned_cols=81 Identities=23% Similarity=0.529 Sum_probs=66.5
Q ss_pred hcCCCeeEEEEeeCCC--CCeee--EEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccccC-CCCC
Q psy12245 78 DKYGEIEEMNVCDNLG--DHLVG--NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMG-ECTR 152 (189)
Q Consensus 78 ~kfG~I~~v~i~~~~~--~~~~G--~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~~~~~~-~c~r 152 (189)
++||+|..|.|-+... ....| =|||+|.+.++|..||...+|...+||.|.|.|- .++| |..|+++ .|+.
T Consensus 142 GQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYG-TTKY----CtsYLRn~~CpN 216 (480)
T COG5175 142 GQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYG-TTKY----CTSYLRNAVCPN 216 (480)
T ss_pred hhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecC-chHH----HHHHHcCCCCCC
Confidence 8999999999986531 11222 3699999999999999999999999999999985 3455 8999988 6777
Q ss_pred CCCCceeeecCC
Q psy12245 153 SGFCNFMHLKPI 164 (189)
Q Consensus 153 g~~Cn~~h~~~~ 164 (189)
..|-|||-..+
T Consensus 217 -p~CMyLHEpg~ 227 (480)
T COG5175 217 -PDCMYLHEPGP 227 (480)
T ss_pred -CCeeeecCCCc
Confidence 66999998664
No 59
>KOG0124|consensus
Probab=98.37 E-value=3e-07 Score=81.20 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~ 131 (189)
++-|+..| ..||+|++|.+..+. +++-+|++||+|+-+|.|+-|++.|||..++||.|.|-.
T Consensus 127 EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 127 EDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 44588899 799999999998765 578899999999999999999999999999999999874
No 60
>KOG0145|consensus
Probab=98.36 E-value=2.6e-06 Score=72.43 Aligned_cols=61 Identities=15% Similarity=0.335 Sum_probs=55.8
Q ss_pred HHHHHhhcCCCeeEEEEeeCCC-CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 72 VFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 72 I~~e~e~kfG~I~~v~i~~~~~-~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.+.| +.||.|.+|+|.++.+ .+.+|+.||...+-++|..|+..|||..+++|.|+|+|-.
T Consensus 295 LWQlF-gpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 295 LWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred HHHHh-CcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 45567 8999999999999864 7899999999999999999999999999999999999953
No 61
>KOG4208|consensus
Probab=98.33 E-value=1.4e-06 Score=71.51 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcC-CCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 68 FFEDVFVECEDKY-GEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 68 ~~eDI~~e~e~kf-G~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
++..+..-+ .+| |.|..+++.+|. +|.++|+|||+|++++.|.-|.+.||+.-|.|+.|.|.+.+..
T Consensus 62 ~e~~~~~~~-~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 62 FETEILNYF-RQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hHHHHhhhh-hhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 344556666 466 889899998875 6889999999999999999999999999999999999999765
No 62
>KOG0117|consensus
Probab=98.31 E-value=1.5e-06 Score=78.27 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhCCCEe-CCeeEEEEec
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GGRPVYAELS 132 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f-~GR~I~v~~~ 132 (189)
|-+++||...| ++-|+|-++++..+ .++..+|+|||.|.+.++|+.|++.||+..+ .|+.|.|..+
T Consensus 94 D~~EdeLvplf-EkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 94 DVFEDELVPLF-EKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred cccchhhHHHH-HhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 45667899999 59999999999987 5788999999999999999999999999877 7899888775
No 63
>KOG0123|consensus
Probab=98.31 E-value=1.5e-06 Score=77.62 Aligned_cols=64 Identities=23% Similarity=0.457 Sum_probs=58.2
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
.++++.| +++|+|.+|+|+++. . +-|++||.|.++++|++|++.||...+.|++|.+-++..+.
T Consensus 13 ~~l~~~f-~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 13 AMLFDKF-SPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred HHHHHHh-cccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 3677788 799999999999998 6 89999999999999999999999999999999999985543
No 64
>KOG0131|consensus
Probab=98.26 E-value=1.4e-06 Score=70.50 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=54.2
Q ss_pred HHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 72 VFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 72 I~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
|+|-| -+-|+|.+|+|+++. .+..+|++||+|.++++|+-|++.||+-.+-||+|++.-+.
T Consensus 26 l~EL~-iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 26 LYELF-IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHH-HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 44556 689999999999875 45679999999999999999999999999999999998875
No 65
>KOG0149|consensus
Probab=98.24 E-value=1.6e-06 Score=72.53 Aligned_cols=68 Identities=25% Similarity=0.378 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 65 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 65 ~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|+.-.|+++.-| ++||+|++.+|..+. +++++|+.||+|.+.++|..|++..| -.+|||+..|.++..
T Consensus 22 w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 22 WETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred cccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 344556788888 499999999998765 58999999999999999999999766 567999999888754
No 66
>KOG0146|consensus
Probab=98.18 E-value=4.3e-06 Score=71.43 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEe---CCeeEEEEeccCccch
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF---GGRPVYAELSPVTDFR 138 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f---~GR~I~v~~~~~~~f~ 138 (189)
+|||+.-| +.||.|+++.|.+-..+..+|++||+|.+..+|..||..|||..- ....|.|.|++.++-+
T Consensus 33 e~dvrrlf-~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 33 EDDVRRLF-QPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred HHHHHHHh-cccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHH
Confidence 57999999 799999999999877778999999999999999999999999764 3356999999776644
No 67
>KOG0147|consensus
Probab=98.14 E-value=3.5e-06 Score=77.39 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 64 HYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 64 ~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+|.-.+++++.-| ..||+|+.|.+..+. ++..+|+.||+|.+.++|.+|+..|||-.++||.|.|....
T Consensus 287 HfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 287 HFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred ccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 4556667888899 599999999999886 78999999999999999999999999999999999998763
No 68
>KOG0144|consensus
Probab=98.12 E-value=6.5e-06 Score=74.03 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEe-C--CeeEEEEeccCcc
Q psy12245 68 FFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWF-G--GRPVYAELSPVTD 136 (189)
Q Consensus 68 ~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f-~--GR~I~v~~~~~~~ 136 (189)
.+.||++.|| +||.|.+|.|.++. ++..+|+.||+|.+.++|.+|+.+||...- - --+|.|.|++-++
T Consensus 47 sE~dlr~lFe-~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 47 SEKDLRELFE-KYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGER 118 (510)
T ss_pred cHHHHHHHHH-HhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhh
Confidence 4568999994 99999999999885 578899999999999999999999987654 3 3679999886433
No 69
>KOG0415|consensus
Probab=98.10 E-value=5e-06 Score=73.30 Aligned_cols=95 Identities=19% Similarity=0.348 Sum_probs=75.2
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCcc--chh---hhh
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTD--FRE---ACC 142 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~-~~~~--f~~---~~c 142 (189)
||+.-.| +.||+|.+..|.++. ++.+--+|||+|++.++.++|.-.|++-.++.|.|+|.|+ ++.+ |+. ..-
T Consensus 254 eDLeiIF-SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~k~~~~~ 332 (479)
T KOG0415|consen 254 EDLEIIF-SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQKGSQKE 332 (479)
T ss_pred cchhhHH-hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhccccccccc
Confidence 4677778 899999999999874 4566779999999999999999999999999999999998 4444 442 122
Q ss_pred cccccCCCCCCCCCceeeecCCC
Q psy12245 143 RQYEMGECTRSGFCNFMHLKPIS 165 (189)
Q Consensus 143 ~~~~~~~c~rg~~Cn~~h~~~~~ 165 (189)
..+....|..+..-+|+|-.++.
T Consensus 333 ~d~~~~d~~~~~~~k~~~kd~~~ 355 (479)
T KOG0415|consen 333 TDHRAKDCVGGPSSKFIHKDQNR 355 (479)
T ss_pred cchhhhccccCCcccchhccCCC
Confidence 23344478888888888876653
No 70
>KOG0109|consensus
Probab=98.03 E-value=6.2e-06 Score=71.01 Aligned_cols=55 Identities=29% Similarity=0.550 Sum_probs=50.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
++++.| .+||+|.+..|. ++++||.|.-.++|..|++.|||+.|+|++++|+++.
T Consensus 94 ElRa~f-e~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 94 ELRAKF-EKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred HHhhhh-cccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 577788 599999999998 5789999999999999999999999999999999973
No 71
>KOG0110|consensus
Probab=97.92 E-value=1.2e-05 Score=75.87 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 64 HYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 64 ~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
-|+..+.+|++.| +.||.|.+|.||... .+..+|++||+|-++.+|..|+.+|.+.-|-||.|..+|+..+.
T Consensus 622 pFeAt~rEVr~LF-~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 622 PFEATKREVRKLF-TAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred chHHHHHHHHHHH-hcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 4778889999999 799999999999873 24559999999999999999999999999999999999985543
No 72
>KOG4660|consensus
Probab=97.91 E-value=7.2e-06 Score=75.45 Aligned_cols=53 Identities=32% Similarity=0.510 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~ 128 (189)
+|...| +.||+|..|..-.+ .+|.+||+|.|..+|+.|+++||++.+.|+.|.
T Consensus 91 ~L~~~f-~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 91 TLLRIF-GAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred HHHHHH-Hhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455566 79999999766554 489999999999999999999999999999988
No 73
>KOG4454|consensus
Probab=97.88 E-value=5.9e-06 Score=68.68 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=63.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
|.+.+||++.||+.. ++++. |.|.| -+=|+|.+|.|+....+..+ +|||.|
T Consensus 6 ae~drtl~v~n~~~~----------------v~eel-----------L~Elf-iqaGPV~kv~ip~~~d~~~k-Fa~v~f 56 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSG----------------VSEEL-----------LSELF-IQAGPVYKVGIPSGQDQEQK-FAYVFF 56 (267)
T ss_pred cchhhHHHHHhhhhh----------------hhHHH-----------HHHHh-hccCceEEEeCCCCccCCCc-eeeeec
Confidence 556788888888862 44332 23334 57899999999987665666 999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.++.+-.-|++.|||-...++++++.+.
T Consensus 57 ~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 57 PNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred ccccchhhhhhhcccchhccchhhcccc
Confidence 9999999999999999999999999886
No 74
>KOG4212|consensus
Probab=97.77 E-value=6.8e-05 Score=67.84 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+|+++.+..|-|+|+=|.+..+.+++.+|++-|+|+++|.++||++.||.....||+|.|.-.
T Consensus 59 qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 59 QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 355555546889999999998888899999999999999999999999999999999999765
No 75
>KOG0131|consensus
Probab=97.76 E-value=4.4e-05 Score=61.89 Aligned_cols=61 Identities=15% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHHHhhcCCCeeEE-EEe-eCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 72 VFVECEDKYGEIEEM-NVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 72 I~~e~e~kfG~I~~v-~i~-~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+...| ++||.|.+- .|. .+.++.++|++||.|.+.++|.+|+..|||.+...|+|+|+|+-
T Consensus 113 L~dtF-safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 113 LYDTF-SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred HHHHH-HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 33445 799998763 232 23346889999999999999999999999999999999999973
No 76
>KOG2314|consensus
Probab=97.76 E-value=0.00014 Score=67.56 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCee-EEEEec
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP-VYAELS 132 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~-I~v~~~ 132 (189)
+-+..-|...| +|+|+|..+.+|-+..+..+|++|++|.+..+|..|++.|||..++..- ..|...
T Consensus 75 ~klk~vl~kvf-sk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 75 EKLKKVLTKVF-SKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHHHHHHHH-HhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehh
Confidence 45556677778 7999999999997666668999999999999999999999999998754 444433
No 77
>KOG0132|consensus
Probab=97.74 E-value=0.00017 Score=68.91 Aligned_cols=94 Identities=17% Similarity=0.274 Sum_probs=67.2
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccccCC
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGE 149 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~~~~~~~ 149 (189)
.||...| +.||.|++|.+..+ +|.|||+.....+|.+|+.+|+...++++.|++.|+--.--++--|--|+..
T Consensus 436 ~dL~~~f-eefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k~~wD~~- 508 (894)
T KOG0132|consen 436 QDLANLF-EEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYKDYWDVE- 508 (894)
T ss_pred HHHHHHH-HhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcchhhhhhhhcc-
Confidence 4788888 49999999999865 8999999999999999999999999999999999972211111112223321
Q ss_pred CCCCCCCceeeecCCCHHHHHHHHh
Q psy12245 150 CTRSGFCNFMHLKPISRELRRYLYS 174 (189)
Q Consensus 150 c~rg~~Cn~~h~~~~~~~l~~~l~~ 174 (189)
-.-.|+=+..+++++..-+.+
T Consensus 509 ----lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 509 ----LGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred ----cCeeEeehHhcCHHHHHhhhh
Confidence 012455556677775554443
No 78
>KOG4212|consensus
Probab=97.66 E-value=8.6e-05 Score=67.18 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=48.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
-+++.| ..||.|.-..|..+. ..+| -|+|.++++|+.|+..|||..++||.|.|.|+
T Consensus 552 mlrDKf-re~G~v~yadime~G--kskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 552 MLRDKF-REIGHVLYADIMENG--KSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HHHHHH-HhccceehhhhhccC--Cccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 567777 689999999886553 4566 69999999999999999999999999999874
No 79
>KOG0146|consensus
Probab=97.65 E-value=5.9e-05 Score=64.58 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=54.0
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+|.+.| -.||.|.+.+|..+. ++.++-+.||.|.++.+|+.||.+|||-.++-+.|+|.+-
T Consensus 301 EliQmF-~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 301 ELIQMF-LPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred HHHHHh-ccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 455677 699999999998664 5678999999999999999999999999999999999885
No 80
>KOG1190|consensus
Probab=97.62 E-value=0.0005 Score=61.79 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=57.2
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCR 143 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~ 143 (189)
-++..| +-||.|.+|+|..+. +-.|-|+|.+...|+-|+..|+|...-|++|++.++.-++-.-...+
T Consensus 314 ~LftlF-gvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~eg 381 (492)
T KOG1190|consen 314 VLFTLF-GVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREG 381 (492)
T ss_pred HHHHHH-hhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCC
Confidence 467778 799999999999885 46899999999999999999999999999999999954444433333
No 81
>KOG4209|consensus
Probab=97.60 E-value=5.6e-05 Score=63.56 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 65 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 65 ~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|..+.+.+..++ .-+|.|..|.|+.+. .++++|++||+|.+.+.++.|++ |||..+.|++|.+++.
T Consensus 111 ~~~t~~~~e~hf-~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 111 FLVTLTKIELHF-ESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cccccchhhhee-eccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 444555678888 599999999998765 46799999999999999999999 9999999999999986
No 82
>KOG4661|consensus
Probab=97.59 E-value=0.00012 Score=68.17 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
-||+..| +|||+|+..+|+.|. ++-.+-+.||+..+.++|.+||..||-..+.||.|.|+-+
T Consensus 420 tDLKnlF-SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 420 TDLKNLF-SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred hHHHHHH-HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4888999 899999999999885 3456779999999999999999999999999999999986
No 83
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.47 E-value=1.9e-05 Score=44.57 Aligned_cols=23 Identities=35% Similarity=0.982 Sum_probs=18.4
Q ss_pred CCccccceecCcCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHN 23 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~ 23 (189)
..|.+|.++|.|++|++|...|.
T Consensus 4 ~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 4 KLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccChhhccCCccCCCCCcCccCC
Confidence 47999999999999999999995
No 84
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.42 E-value=0.00077 Score=52.87 Aligned_cols=59 Identities=22% Similarity=0.472 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.+..++.+.| +.||+|.=|++.. |..+|+|.+-++|.+|+. |+|..+.|+.|++.+-.
T Consensus 47 d~l~~~ll~~~-~~~GevvLvRfv~-------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 47 DNLMDELLQKF-AQYGEVVLVRFVG-------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHHHHH-HCCS-ECEEEEET-------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE--
T ss_pred HHHHHHHHHHH-HhCCceEEEEEeC-------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCC
Confidence 46788999999 6999998887774 569999999999999987 99999999999999863
No 85
>KOG0109|consensus
Probab=97.39 E-value=0.0005 Score=59.44 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+|+..| ++||+|.+..|++| ++||..++...|..|+++|||-.++|..|.|+-+
T Consensus 18 elr~lF-e~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 18 ELRSLF-EQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred HHHHHH-HhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 466677 59999999999987 4677778999999999999999999999999987
No 86
>KOG1548|consensus
Probab=97.39 E-value=0.0014 Score=57.82 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=53.1
Q ss_pred HHHHHhhcCCCee--------EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 72 VFVECEDKYGEIE--------EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 72 I~~e~e~kfG~I~--------~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.+.+ +|+|-|. .|++.++..++++|-+-+.|-..++-..|++.|++-.|.|+.|+|+-+.
T Consensus 151 ~~~~~-sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 151 FAEVM-SKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred HHHHH-HhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence 44455 7999875 3678887778999999999999999999999999999999999999873
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.33 E-value=0.0029 Score=46.39 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=57.0
Q ss_pred eEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHH
Q psy12245 30 TILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREE 108 (189)
Q Consensus 30 ~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e 108 (189)
||+|+|+... +|.+.+.+ .|-+.| .|...=+.+|-+. +....|+|||.|.+++
T Consensus 3 TvMirNIPn~----------------~t~~~L~~-------~l~~~~---~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~ 56 (97)
T PF04059_consen 3 TVMIRNIPNK----------------YTQEMLIQ-------ILDEHF---KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQ 56 (97)
T ss_pred eEEEecCCCC----------------CCHHHHHH-------HHHHhc---cCcceEEEeeeeccCCCceEEEEEEcCCHH
Confidence 8999999863 44444433 344445 3777778888664 3567999999999999
Q ss_pred HHHHHHHHhCCCEeC----CeeEEEEecc
Q psy12245 109 DAEKAVNDLNNRWFG----GRPVYAELSP 133 (189)
Q Consensus 109 ~A~~A~~~LnGr~f~----GR~I~v~~~~ 133 (189)
+|.+-.+.++|+... .+...+.|+.
T Consensus 57 ~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 57 AAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred HHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 999999999999885 3445556553
No 88
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.20 E-value=0.0013 Score=48.51 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCCeeEEEEe-eC-------CCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeE-EEEec
Q psy12245 70 EDVFVECEDKYGEIEEMNVC-DN-------LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV-YAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~-~~-------~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I-~v~~~ 132 (189)
..|.++| ++||.|.+..-. ++ .......-+.|+|.+..+|.+|++ -||+.|+|..+ -|.+.
T Consensus 20 ~~Vl~~F-~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 20 NQVLRHF-SSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp HHHHHHH-HCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-
T ss_pred HHHHHHH-HhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEc
Confidence 3688899 699999888511 10 001235689999999999999997 89999999754 45554
No 89
>KOG0533|consensus
Probab=97.17 E-value=0.00096 Score=56.54 Aligned_cols=69 Identities=25% Similarity=0.387 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
.-+.+||++.| ..||.++.+.|.-+..+...|.+=|.|...++|..|++.+||--.+|+++........
T Consensus 94 ~V~~~Dl~eLF-~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 94 GVIDADLKELF-AEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred CcchHHHHHHH-HHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 34455888888 6999999999988877888999999999999999999999999999999999887443
No 90
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.09 E-value=0.0013 Score=42.90 Aligned_cols=40 Identities=33% Similarity=0.596 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHH
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 114 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~ 114 (189)
.++|...| ..||+|.++.++.. .-.+||+|.+..+|++|+
T Consensus 14 ~~~vl~~F-~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHF-ASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHH-HhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 34678899 69999999999843 457999999999999985
No 91
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.02 E-value=0.00044 Score=38.23 Aligned_cols=22 Identities=45% Similarity=0.925 Sum_probs=19.9
Q ss_pred CCccccceecCcCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHN 23 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~ 23 (189)
+.|.+| ++|.|++|+.|...|.
T Consensus 5 ~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCc-cCCCCCCCCCcCCCCc
Confidence 379999 8999999999999986
No 92
>KOG0106|consensus
Probab=96.92 E-value=0.00071 Score=56.36 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
..||..-| .+||+|.++.+. .|++||.|++..+|..|+..|||..|.|-.+.+++.-
T Consensus 15 ~~d~E~~f-~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 15 ERDVERFF-KGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred hhHHHHHH-hhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 34677777 699999999886 5888999999999999999999999999888888763
No 93
>KOG0226|consensus
Probab=96.88 E-value=0.0011 Score=56.29 Aligned_cols=54 Identities=20% Similarity=0.446 Sum_probs=47.3
Q ss_pred hcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy12245 78 DKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131 (189)
Q Consensus 78 ~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~ 131 (189)
.||-.-..-+|.++. +++.+|+.||.|.+..++..|++.|||++.+.|+|...-
T Consensus 212 ~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 212 KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred HhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 677777777787764 578999999999999999999999999999999987643
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.58 E-value=0.0033 Score=45.14 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=32.6
Q ss_pred CCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 81 GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 81 G~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
|+|.+|. .|.|.|+|.+.+.|..|.+-|+|...-|+.|.|.|.+..
T Consensus 32 GkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 32 GKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp --EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred CEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 6887772 378999999999999999999999999999999998653
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.50 E-value=0.0055 Score=45.41 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCC-----EeCCeeEEEEec
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR-----WFGGRPVYAELS 132 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr-----~f~GR~I~v~~~ 132 (189)
.+||++.| ++||.|.=|.+..- ...+||+|.+.++|++|+..+.-. .+.+..++++..
T Consensus 15 re~iK~~f-~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 15 REDIKEAF-SQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp HHHHHHHT--SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred HHHHHHHH-HhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 45899999 69999988777653 457999999999999999988654 566777777765
No 96
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.47 E-value=0.0015 Score=35.97 Aligned_cols=25 Identities=24% Similarity=0.743 Sum_probs=21.9
Q ss_pred chhhhhcccccCCCCCCCCCceeee
Q psy12245 137 FREACCRQYEMGECTRSGFCNFMHL 161 (189)
Q Consensus 137 f~~~~c~~~~~~~c~rg~~Cn~~h~ 161 (189)
++...|..|..|.|.+|+.|.|+|.
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCc
Confidence 4556899999999999999999996
No 97
>KOG2068|consensus
Probab=96.46 E-value=0.0012 Score=57.92 Aligned_cols=82 Identities=26% Similarity=0.496 Sum_probs=62.3
Q ss_pred HHhhcCCCeeEEEEeeCCC----CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhcccccC-C
Q psy12245 75 ECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMG-E 149 (189)
Q Consensus 75 e~e~kfG~I~~v~i~~~~~----~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~~~~~~-~ 149 (189)
-| ++||.|.+|.+..... ...---+||+|+..++|..|+...+|-.++|+.|.|.+- ..+| |..|+.+ .
T Consensus 100 yf-gqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g-ttky----cs~~l~~~~ 173 (327)
T KOG2068|consen 100 YF-GQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG-TTKY----CSFYLRNDI 173 (327)
T ss_pred cc-cccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC-CCcc----hhHHhhhhc
Confidence 45 7999999999987541 111123999999999999999999999999999988875 3344 5556555 5
Q ss_pred CCCCCCCceeeecC
Q psy12245 150 CTRSGFCNFMHLKP 163 (189)
Q Consensus 150 c~rg~~Cn~~h~~~ 163 (189)
|.+.+ |=|||-.-
T Consensus 174 c~~~~-cmylhe~~ 186 (327)
T KOG2068|consen 174 CQNPD-CMYLHEIG 186 (327)
T ss_pred ccCcc-cccccccc
Confidence 66644 99999754
No 98
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.45 E-value=0.024 Score=44.56 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=46.8
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
..|...+ +.||+|.+|..+- +-.|-|.|.+..+|-+|+.++..+. -|..+++.+-
T Consensus 105 ~sV~~~L-s~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~~-pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRL-SVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQSRA-PGTMFQCSWQ 159 (166)
T ss_pred HHHHHHH-HhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcCCC-CCceEEeecc
Confidence 3678888 7999999999984 4568899999999999999998854 7788888774
No 99
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=96.42 E-value=0.00057 Score=38.46 Aligned_cols=25 Identities=28% Similarity=0.701 Sum_probs=18.9
Q ss_pred chhhhhccccc-CCCCCCCCCceeee
Q psy12245 137 FREACCRQYEM-GECTRSGFCNFMHL 161 (189)
Q Consensus 137 f~~~~c~~~~~-~~c~rg~~Cn~~h~ 161 (189)
|+...|..|.. |.|+.|+.|+|+|.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 45678998887 89999999999996
No 100
>KOG0106|consensus
Probab=96.13 E-value=0.0032 Score=52.43 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.||.+.+ .++|++....+ ..+.++|+|++.++|..|+..|+|..+.|+.|.+....
T Consensus 114 qdl~d~~-~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 114 QDLKDHF-RPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred HHHhhhh-cccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 4788888 69999944433 26899999999999999999999999999999995543
No 101
>KOG4205|consensus
Probab=95.92 E-value=0.0051 Score=53.95 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+..+|.+++.| ++||+|.+..|.++. .++.+|+.||+|++.+.-..++. ..-..++||.|.+.-+
T Consensus 17 ~ttee~Lr~yf-~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 17 ETTEESLREYF-SQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred cccHHHHHHHh-cccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 44455677778 799999999999864 57899999999999887776665 4456678888887665
No 102
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.70 E-value=0.04 Score=44.89 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhC--CCEeCCeeEEEEeccCccc
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPVTDF 137 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~Ln--Gr~f~GR~I~v~~~~~~~f 137 (189)
...++.-+ .+|+.+..+.+.+. -+.+-|.|.+.++|..|...|+ |..|.|..+.+.|......
T Consensus 9 ~~~l~~l~-~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 9 LAELEELF-STYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp HHHHHHHH-HTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred HHHHHHHH-HhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 34667777 79999999988865 6889999999999999999999 9999999999999854444
No 103
>KOG1855|consensus
Probab=95.59 E-value=0.015 Score=52.67 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCC---C---CC--------eeeEEEEEecCHHHHHHHHHHhCC
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNL---G---DH--------LVGNVYIKFRREEDAEKAVNDLNN 119 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~---~---~~--------~~G~vfV~F~~~e~A~~A~~~LnG 119 (189)
|.|.+.| +.+|.|..|.|+++. . +. .+-.|+|+|+..+.|.+|...||-
T Consensus 246 enl~kiF-g~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 246 ENLSKIF-GTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred HHHHHHh-hcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 5677788 899999999999873 1 11 244699999999999999998853
No 104
>KOG4205|consensus
Probab=95.44 E-value=0.017 Score=50.66 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+-.++|+++.| .+||.|..+.+..+. ....+|+.||.|.+.++..+++. ..-+.|+|+.+.|.-+-
T Consensus 108 ~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 108 DTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred CCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 45567889999 599999999998664 46789999999999888888775 88999999999998873
No 105
>KOG1365|consensus
Probab=95.37 E-value=0.027 Score=50.65 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCCCCCCCC-CeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCee
Q psy12245 19 SRIHNKPTFS-QTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLV 97 (189)
Q Consensus 19 ~~~H~~P~~S-~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~ 97 (189)
+++|..|+.+ .||-|+.+.-. -+-+.|-..+.||..||+ -..|++.-|..+++.
T Consensus 270 p~~~~p~~~~kdcvRLRGLPy~----------------AtvEdIL~FlgdFa~~i~---------f~gVHmv~N~qGrPS 324 (508)
T KOG1365|consen 270 PARLVPPTRSKDCVRLRGLPYE----------------ATVEDILDFLGDFATDIR---------FQGVHMVLNGQGRPS 324 (508)
T ss_pred ccccCCCCCCCCeeEecCCChh----------------hhHHHHHHHHHHHhhhcc---------cceeEEEEcCCCCcC
Confidence 6678888875 58888877542 122334444444443332 234677778778999
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy12245 98 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 141 (189)
Q Consensus 98 G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~ 141 (189)
|-|||+|.+.++|..|...-+.....+|-|.+--++.+...+..
T Consensus 325 GeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~vL 368 (508)
T KOG1365|consen 325 GEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEVL 368 (508)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHHH
Confidence 99999999999999999999988888898888777766666443
No 106
>KOG4285|consensus
Probab=95.32 E-value=0.033 Score=48.58 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEE
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~ 128 (189)
-|..+| ++||.|++.....+ --.++|+|.+..+|.+|+. -||+.|+|-.+.
T Consensus 212 ~vL~~F-~~cG~Vvkhv~~~n-----gNwMhirYssr~~A~KALs-kng~ii~g~vmi 262 (350)
T KOG4285|consen 212 IVLNLF-SRCGEVVKHVTPSN-----GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMI 262 (350)
T ss_pred HHHHHH-HhhCeeeeeecCCC-----CceEEEEecchhHHHHhhh-hcCeeeccceEE
Confidence 377889 69999999888854 3479999999999999997 799999997643
No 107
>KOG0116|consensus
Probab=95.13 E-value=0.025 Score=51.52 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
..+|+++| .+||.|+...|.... .+....++||+|++.++++.|+++ +--..+|+.|.|+--
T Consensus 302 ~~~l~~~F-k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 302 PAELEEVF-KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred HHHHHHHH-hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 33577788 699999999997643 333448999999999999999985 467779999999863
No 108
>KOG0151|consensus
Probab=95.06 E-value=0.037 Score=53.11 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCC----CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~----~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+.+...| +.||+|.+|+|..+.+ ...+-..||-|-+..+|+.|++.|+|..+.++.+..-|.
T Consensus 189 ~~ll~tf-GrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 189 NFLLRTF-GRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred HHHHHHh-cccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 3577788 7999999999986643 355668999999999999999999999999999988876
No 109
>KOG4211|consensus
Probab=94.80 E-value=0.14 Score=47.18 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
||.+=| +.. .|+++.+++.. ++..|-|||+|++++++++|++ .+-.....|-|.|--+
T Consensus 26 ei~~Ff-~~~-~I~~~~~~r~~-Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 26 EILDFF-SNC-GIENLEIPRRN-GRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred HHHHHH-hcC-ceeEEEEeccC-CCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 444444 343 78888887652 5778999999999999999998 5666666777777555
No 110
>KOG2416|consensus
Probab=94.60 E-value=0.026 Score=53.15 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=62.1
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.|.+|.|.|+.-+ ||..+ |++++.-.-|.|++.||.+ .+-.+||.|.+
T Consensus 443 ~SnvlhI~nLvRP----------------FTlgQ-----------LkelL~rtgg~Vee~WmDk-----IKShCyV~yss 490 (718)
T KOG2416|consen 443 PSNVLHIDNLVRP----------------FTLGQ-----------LKELLGRTGGNVEEFWMDK-----IKSHCYVSYSS 490 (718)
T ss_pred ccceEeeeccccc----------------chHHH-----------HHHHHhhccCchHHHHHHH-----hhcceeEeccc
Confidence 5789999999875 44444 4455623667888887764 46789999999
Q ss_pred HHHHHHHHHHhCCCEe---CCeeEEEEeccCccch
Q psy12245 107 EEDAEKAVNDLNNRWF---GGRPVYAELSPVTDFR 138 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f---~GR~I~v~~~~~~~f~ 138 (189)
.++|.....+|||-.. +++.|.|.|...+...
T Consensus 491 ~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld 525 (718)
T KOG2416|consen 491 VEEAAATREALHNVQWPPSNPKHLIADFVRADELD 525 (718)
T ss_pred HHHHHHHHHHHhccccCCCCCceeEeeecchhHHH
Confidence 9999999999999766 7788999998655443
No 111
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.52 E-value=0.16 Score=34.61 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEE
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v 129 (189)
.+|++..+ .+|+-. +|...+ .| .||.|.+..+|++|.+..||+.|.+..+..
T Consensus 14 v~d~K~~L-r~y~~~-~I~~d~------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 14 VEDFKKRL-RKYRWD-RIRDDR------TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHH-hcCCcc-eEEecC------CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35788889 589643 444443 34 699999999999999999999998877654
No 112
>KOG4211|consensus
Probab=94.50 E-value=0.1 Score=48.05 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=48.0
Q ss_pred HHHHHHhhcCCCeeE-EEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy12245 71 DVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 141 (189)
Q Consensus 71 DI~~e~e~kfG~I~~-v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~ 141 (189)
||.+=| +-.=.|.. |.++.+..+.+.|-|||+|++.+.|++|+. -|-+.++-|-|.+--+....++.+.
T Consensus 119 dI~~FF-aGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 119 DIVEFF-AGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred HHHHHh-cCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhhc
Confidence 333333 33333433 455655556789999999999999999997 5667778888888777665555443
No 113
>KOG1456|consensus
Probab=94.01 E-value=0.29 Score=44.11 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=49.6
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCE-eCC-eeEEEEeccCc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW-FGG-RPVYAELSPVT 135 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~-f~G-R~I~v~~~~~~ 135 (189)
=|...| ...|+|..|.|.+.. -..|-|+|++.+.|++|-.+|||-. |.| -.|.++|+..+
T Consensus 138 Vly~Ic-np~GkVlRIvIfkkn----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 138 VLYTIC-NPQGKVLRIVIFKKN----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred hhhhhc-CCCCceEEEEEEecc----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 356778 799999999999763 4579999999999999999999975 456 46999998443
No 114
>KOG1677|consensus
Probab=93.81 E-value=0.033 Score=48.58 Aligned_cols=27 Identities=37% Similarity=0.752 Sum_probs=24.6
Q ss_pred CCccccceecCcCCCCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKPTF 27 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P~~ 27 (189)
+.|..|.+||.|.||.+|-..|..+..
T Consensus 178 ~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 178 KLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred cCCCccccCCCCCCCCcCeecCCCccc
Confidence 479999999999999999999998854
No 115
>KOG0120|consensus
Probab=93.66 E-value=0.056 Score=50.20 Aligned_cols=62 Identities=13% Similarity=0.292 Sum_probs=55.4
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCC-CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~-~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
..++|.+ ..||.+....++.+.. +..+|++|-+|.+..-+..|+..|||...++.+|+|..+
T Consensus 304 ~q~~Ell-~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 304 DQVKELL-DSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred HHHHHHH-HhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3566677 5899999999998764 578999999999999999999999999999999999987
No 116
>KOG4210|consensus
Probab=93.52 E-value=0.029 Score=48.62 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 65 YDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 65 ~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|....+||+.++ ..+|.|..+.++... .+...|++||.|.+...+..|+.. ..+..+|+++.+.+...
T Consensus 195 f~~~~d~~~~~~-~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 195 FSLTRDDLKEHF-VSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccchHHHhhhc-cCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 445556777888 799999999999764 568899999999999999999988 99999999999988643
No 117
>KOG1995|consensus
Probab=93.15 E-value=0.085 Score=46.79 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHhhcCCCee--------EEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIE--------EMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~--------~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+|.+-| .+.|.|. .|+|.++. +..++|.+-|.|++...|+.|+..++++.|.|.+|.|.++.
T Consensus 82 ~~~~~f-~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~ 152 (351)
T KOG1995|consen 82 DNADFF-LQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAE 152 (351)
T ss_pred HHHHHH-hhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhh
Confidence 455555 4666653 35555553 46889999999999999999999999999999999998873
No 118
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=93.01 E-value=0.061 Score=37.38 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=11.3
Q ss_pred CCCCCCCeEEecCCCCCcc
Q psy12245 23 NKPTFSQTILLLNLYINPQ 41 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~ 41 (189)
+.|..|+||+|+|||++.+
T Consensus 49 ~~~~aS~C~lLkNMFDP~~ 67 (73)
T PF15519_consen 49 IPPIASRCFLLKNMFDPAE 67 (73)
T ss_dssp --S---SEEEEESSS-TTC
T ss_pred CCCCCCceeeeecCCCccc
Confidence 3467899999999999853
No 119
>KOG1456|consensus
Probab=92.97 E-value=0.49 Score=42.68 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
-|+..+ ..||.|++|+..+.. .|.+-|+..+..+-+.|+..||+-...|..|.+.++.
T Consensus 304 rlFNl~-ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 304 RLFNLF-CLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred hhhhhh-hhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 356666 589999999999864 7999999999999999999999999999999998773
No 120
>KOG1190|consensus
Probab=92.84 E-value=0.25 Score=44.91 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=52.2
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeee-EEEEEecCHHHHHHHHHHhCCCEe-CC-eeEEEEeccCc----cchhhhhc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVG-NVYIKFRREEDAEKAVNDLNNRWF-GG-RPVYAELSPVT----DFREACCR 143 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G-~vfV~F~~~e~A~~A~~~LnGr~f-~G-R~I~v~~~~~~----~f~~~~c~ 143 (189)
=+.+.| ++||.|.+|.-.... .| .|-|+|.+.+.|..|-.+|+|+-+ +| -.|+.+|+..+ +|..-.-|
T Consensus 166 VLHqvF-S~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSR 240 (492)
T KOG1190|consen 166 VLHQVF-SKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSR 240 (492)
T ss_pred HHHHHH-hhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccc
Confidence 355667 899999999888653 45 488999999999999999999965 55 45888887442 34444444
Q ss_pred ccc
Q psy12245 144 QYE 146 (189)
Q Consensus 144 ~~~ 146 (189)
.|.
T Consensus 241 DyT 243 (492)
T KOG1190|consen 241 DYT 243 (492)
T ss_pred ccc
Confidence 443
No 121
>KOG1457|consensus
Probab=92.33 E-value=0.96 Score=38.27 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=33.1
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCCEeC---CeeEEEEec
Q psy12245 96 LVGNVYIKFRREEDAEKAVNDLNNRWFG---GRPVYAELS 132 (189)
Q Consensus 96 ~~G~vfV~F~~~e~A~~A~~~LnGr~f~---GR~I~v~~~ 132 (189)
.+-++||.|.+..+|.+|+++|||-.|| +..|+.+++
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 3468999999999999999999999996 567899987
No 122
>KOG4206|consensus
Probab=92.30 E-value=0.76 Score=38.45 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=39.8
Q ss_pred hcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEec
Q psy12245 78 DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELS 132 (189)
Q Consensus 78 ~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~-GR~I~v~~~ 132 (189)
.+|+--..|+...+. .|.|||+|.+...|..|.+.|.|-..- ..++++.++
T Consensus 168 ~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred hhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 356666677776543 689999999999999999999998776 666666664
No 123
>KOG4307|consensus
Probab=91.29 E-value=0.4 Score=46.26 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCCCee-EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy12245 70 EDVFVECEDKYGEIE-EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131 (189)
Q Consensus 70 eDI~~e~e~kfG~I~-~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~ 131 (189)
+||.+=| .-|-.+- +|.+-.+..+.+.|-+-|-|++.++|..|...|+|+.+..|.|.+.+
T Consensus 882 ~dI~~FF-~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 882 EDIVEFF-NDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred HHHHHHh-cccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4566666 6776554 34444555678899999999999999999999999999999998765
No 124
>KOG0128|consensus
Probab=89.11 E-value=0.12 Score=50.51 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 65 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 65 ~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.-+.+.++..+ +++|.+.++.++....+.++|.+||.|.++.+|..++..+++..+..+.+.+..++.
T Consensus 746 f~gt~e~~k~l~-~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 746 FQGTKEELKSLA-SKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCCchHHHHhhc-cccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 445666788888 799999999999888889999999999999999999999999999999888888643
No 125
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.52 E-value=1.6 Score=32.61 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=35.8
Q ss_pred CCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCC
Q psy12245 81 GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 124 (189)
Q Consensus 81 G~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~G 124 (189)
..|..++|.++.. ..+=.|-++|.+.++|..-.+.+||+.|+.
T Consensus 39 ~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 39 EDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4688899988743 235578899999999999999999999975
No 126
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=87.29 E-value=0.44 Score=24.47 Aligned_cols=19 Identities=37% Similarity=0.821 Sum_probs=15.0
Q ss_pred CccccceecCcCCCCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHN 23 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~ 23 (189)
.|.|+-. |+.|+.|...|.
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 3776644 999999999883
No 127
>KOG4574|consensus
Probab=86.47 E-value=0.57 Score=46.02 Aligned_cols=92 Identities=17% Similarity=0.333 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEe--CCeeEEEEeccCcc-chhhhhccccc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF--GGRPVYAELSPVTD-FREACCRQYEM 147 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f--~GR~I~v~~~~~~~-f~~~~c~~~~~ 147 (189)
-|-..| ++||.|.+.+..++ --.+-|.|.+.+.|..|..+|+|+.. .|-+.+|.++.... |....-
T Consensus 314 sL~~l~-s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep~ln----- 382 (1007)
T KOG4574|consen 314 SLATLC-SDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEPPLN----- 382 (1007)
T ss_pred HHHHHH-Hhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccCCcC-----
Confidence 466678 79999999999876 35688999999999999999999986 68889999985443 333311
Q ss_pred CCCCCCCCCceeeecCCCHHHHHHHHhccc
Q psy12245 148 GECTRSGFCNFMHLKPISRELRRYLYSRRK 177 (189)
Q Consensus 148 ~~c~rg~~Cn~~h~~~~~~~l~~~l~~~~~ 177 (189)
--+.=||-|..+..+.|...||..|.
T Consensus 383 ----~~g~nn~~~~~~l~e~ln~g~~n~q~ 408 (1007)
T KOG4574|consen 383 ----LTGYNNFNHQPLLQEQLNTGLFNTQS 408 (1007)
T ss_pred ----cccccCCCCCcchhhhhccccceecc
Confidence 01224777888888888888877543
No 128
>KOG4676|consensus
Probab=85.98 E-value=1.3 Score=40.15 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=47.2
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCC----CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLG----DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~----~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.|...| +-.|+|.++.|+.+.. +...-.+||.|.+...+..|. .|....|=++.|.|-.+
T Consensus 23 qm~tlF-g~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 23 QMQTLF-GNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred HHHHHH-hhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 455566 7899999999986542 345678999999999888765 58888898988888776
No 129
>KOG1040|consensus
Probab=85.45 E-value=0.25 Score=43.63 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=24.6
Q ss_pred ccchhhhhcccccCCCCCCCCCceeeec
Q psy12245 135 TDFREACCRQYEMGECTRSGFCNFMHLK 162 (189)
Q Consensus 135 ~~f~~~~c~~~~~~~c~rg~~Cn~~h~~ 162 (189)
.....-+|+-|++|.|.+|+.|+|+|.+
T Consensus 73 ~~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 73 DSRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred ccCCceeehhhhhhhhhccCcCcchhhh
Confidence 4667778999999999999999999975
No 130
>KOG0112|consensus
Probab=85.33 E-value=0.74 Score=45.44 Aligned_cols=55 Identities=25% Similarity=0.440 Sum_probs=48.0
Q ss_pred HHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEec
Q psy12245 72 VFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELS 132 (189)
Q Consensus 72 I~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~G--R~I~v~~~ 132 (189)
+..+| ..||.|..|.+. |..-++||.|++...|+.|+..|-|-.|+| +.|.|.|+
T Consensus 472 l~r~f-d~fGpir~Idy~-----hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 472 LNREF-DRFGPIRIIDYR-----HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred HHHHh-hccCcceeeecc-----cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 44577 799999998876 457899999999999999999999999987 56999987
No 131
>KOG1457|consensus
Probab=84.28 E-value=2.2 Score=36.18 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEe
Q psy12245 69 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 122 (189)
Q Consensus 69 ~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f 122 (189)
+++++..+ +.|--...++|-... .--.+|++|++.+.|..|+..|.|-.+
T Consensus 224 ed~l~~~~-~~~~gf~~l~~~~~~---g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 224 EDELKQLL-SRYPGFHILKIRARG---GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHH-HhCCCceEEEEecCC---CcceEeecHHHHHHHHHHHHHhhccee
Confidence 44567777 688877666765432 245899999999999999999998765
No 132
>KOG2494|consensus
Probab=84.18 E-value=0.35 Score=42.56 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=23.7
Q ss_pred cch-hhhhcccccCCCCCCCC-CceeeecC
Q psy12245 136 DFR-EACCRQYEMGECTRSGF-CNFMHLKP 163 (189)
Q Consensus 136 ~f~-~~~c~~~~~~~c~rg~~-Cn~~h~~~ 163 (189)
.|. ..+|++|++|.|+||+. |.|.|.-+
T Consensus 33 ~wl~~eVCReF~rn~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 33 KWLTLEVCREFLRNTCSRGDRECKFAHPPK 62 (331)
T ss_pred chhHHHHHHHHHhccccCCCccccccCCCC
Confidence 344 47999999999999996 99999854
No 133
>KOG3152|consensus
Probab=84.13 E-value=0.71 Score=39.56 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=43.0
Q ss_pred HHHHHhhcCCCeeEEEEeeCCC---------CCe----eeEEEEEecCHHHHHHHHHHhCCCEeCCee
Q psy12245 72 VFVECEDKYGEIEEMNVCDNLG---------DHL----VGNVYIKFRREEDAEKAVNDLNNRWFGGRP 126 (189)
Q Consensus 72 I~~e~e~kfG~I~~v~i~~~~~---------~~~----~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~ 126 (189)
+++.+ +.||.|-.|.+-.+.. +.. .--.+|+|.+...|..+...|||..++|+.
T Consensus 91 lReil-~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 91 LREIL-SQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHH-HhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 56677 7999999999976532 111 123789999999999999999999999985
No 134
>KOG2135|consensus
Probab=84.13 E-value=0.68 Score=42.75 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 68 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 68 ~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
...++...| ++||+|..|.|..+. -.+-|+|.+..+|-.|.. .+|-.|++|.|.+.|-..
T Consensus 386 t~a~ln~hf-A~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHF-AQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhh-hhcCccccccccCch-----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 456888999 799999999997652 346799999999988875 899999999999998754
No 135
>KOG2591|consensus
Probab=81.34 E-value=2.8 Score=39.70 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=41.4
Q ss_pred HHHHHHhh-cCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCC--CEeCCeeEEEEecc
Q psy12245 71 DVFVECED-KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN--RWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~-kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnG--r~f~GR~I~v~~~~ 133 (189)
+|+..|.+ ..-++.++...-| -.-||+|++..||++|.+.|-- ..|.|++|.|.+-.
T Consensus 191 ~Vk~lf~~encPk~iscefa~N------~nWyITfesd~DAQqAykylreevk~fqgKpImARIKa 250 (684)
T KOG2591|consen 191 VVKALFKGENCPKVISCEFAHN------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKA 250 (684)
T ss_pred HHHHHhccCCCCCceeeeeeec------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhh
Confidence 56666621 2346777777655 3479999999999999998854 46889988887643
No 136
>KOG1365|consensus
Probab=80.13 E-value=3.3 Score=37.65 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHH
Q psy12245 65 YDNFFEDVFVECEDK----YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVND 116 (189)
Q Consensus 65 ~~~~~eDI~~e~e~k----fG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~ 116 (189)
|+....||.+=| .. -|-++.|......+++..|-|||.|..+++|+.|+..
T Consensus 171 fdat~~dVv~FF-~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 171 FDATALDVVEFF-GPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred CCcchHHHHHhc-CCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 555666777544 21 2356677777766778999999999999999999863
No 137
>KOG0128|consensus
Probab=78.58 E-value=0.35 Score=47.30 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=54.1
Q ss_pred cCCChHHHHHHHHHH---------HHHHHHHHhhcCCCeeEEEEee-CCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeC
Q psy12245 54 SNVTDEEMQEHYDNF---------FEDVFVECEDKYGEIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG 123 (189)
Q Consensus 54 ~~~~~~e~~~~~~~~---------~eDI~~e~e~kfG~I~~v~i~~-~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~ 123 (189)
++++.+++.+...-| .+|+...+ +.+|.|..+.|.. -..+..+|.+||.|..+++|.+|+....+..|+
T Consensus 657 ~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~-~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 657 FKVSPNEIRDLIKIFVSNLSPKMSEEDLSERF-SPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred cCcCchHHHHHHHHHHhhcchhhcCchhhhhc-CccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 456665554433322 46888888 7999988887762 224678999999999999999999877777666
Q ss_pred CeeEEEE
Q psy12245 124 GRPVYAE 130 (189)
Q Consensus 124 GR~I~v~ 130 (189)
...+.++
T Consensus 736 K~~v~i~ 742 (881)
T KOG0128|consen 736 KISVAIS 742 (881)
T ss_pred hhhhhee
Confidence 4444443
No 138
>KOG1040|consensus
Probab=78.02 E-value=1.2 Score=39.48 Aligned_cols=35 Identities=29% Similarity=0.751 Sum_probs=27.2
Q ss_pred CccccceecCcCCCCCCCCCCCCCCCCCeEEecCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHNKPTFSQTILLLNLYI 38 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~~P~~S~~v~l~Nm~~ 38 (189)
.|.||.+.|.|..|..|+..|..| ...+..-+||.
T Consensus 107 ec~ff~~~g~c~~~~~c~y~h~dp--qt~~k~c~~~~ 141 (325)
T KOG1040|consen 107 ECKFFSLFGECTNGKDCPYLHGDP--QTAIKKCKWYK 141 (325)
T ss_pred cccccccccccccccCCcccCCCh--hhhhhccchhh
Confidence 489999999999999999999988 22344445554
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.33 E-value=6.7 Score=26.70 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=25.6
Q ss_pred CeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 82 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 82 ~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.|-+|.|..+ +.||+-.. +.|..+++.|+|..+.|++|.++.+
T Consensus 32 ~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 32 DIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred hEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4677777754 57777654 6889999999999999999999753
No 140
>KOG0115|consensus
Probab=76.95 E-value=2.4 Score=36.35 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=43.5
Q ss_pred HHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCC
Q psy12245 72 VFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 124 (189)
Q Consensus 72 I~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~G 124 (189)
+.+++ +.||+|+.-+++.+..+.+.|...|.|...-.|.+|....+-.-|.+
T Consensus 48 l~~~f-~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 48 LEQAF-RRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred HHHhh-hhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 45567 79999999999887767788899999999999999999886655644
No 141
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=76.23 E-value=3.9 Score=28.76 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=26.8
Q ss_pred CeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEe
Q psy12245 82 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF 122 (189)
Q Consensus 82 ~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f 122 (189)
.|.++..+.. .+|++||+=.+..+...|++.+.+-+.
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccceee
Confidence 6777777754 699999999999999999998876443
No 142
>KOG1039|consensus
Probab=76.02 E-value=1 Score=40.15 Aligned_cols=25 Identities=40% Similarity=0.953 Sum_probs=22.6
Q ss_pred CCccccceecCcCCCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKPT 26 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P~ 26 (189)
++|.+|-+ |.|++|++|...|..|.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 36888888 99999999999999994
No 143
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=75.59 E-value=7.7 Score=27.86 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 119 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnG 119 (189)
||.+.| +.||.|.=-+|.. .-|||...+.+.|..|++.++-
T Consensus 24 DI~qlF-spfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 24 DIYQLF-SPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHC-CCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred hHHHHh-ccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 788888 8999997777764 4599999999999999998863
No 144
>KOG2202|consensus
Probab=72.60 E-value=1.6 Score=37.25 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=21.5
Q ss_pred CccccceecCcCCCCCCCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHNKPT 26 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~~P~ 26 (189)
.|.+|+++ .|+.|..|+.+|.++.
T Consensus 154 ~C~~~e~~-~C~rG~~CnFmH~k~~ 177 (260)
T KOG2202|consen 154 ICGQFERT-ECSRGGACNFMHVKRL 177 (260)
T ss_pred hhcccccc-cCCCCCcCcchhhhhh
Confidence 59999996 9999999999999844
No 145
>KOG4213|consensus
Probab=72.34 E-value=9.2 Score=31.32 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeCCCC--CeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEE
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDNLGD--HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAE 130 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~~~~--~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~ 130 (189)
++..+|+.+-. + |++..|..-..... ..+|.+||+|.+.+.|.++++ -++..|..+.|.-.
T Consensus 120 d~ql~~l~qw~-~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el~r~ 182 (205)
T KOG4213|consen 120 DDQLDDLNQWA-S--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAETELKRS 182 (205)
T ss_pred HHHHHHHHHHh-c--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccchHHHHH
Confidence 46667777666 4 89999988765433 568999999999999998776 45555555555433
No 146
>KOG2185|consensus
Probab=70.79 E-value=1.9 Score=39.23 Aligned_cols=21 Identities=38% Similarity=1.116 Sum_probs=19.3
Q ss_pred CccccceecCcCCCCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHN 23 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~ 23 (189)
+|+||-- |-||+|+.|-..|=
T Consensus 142 pC~ffLe-g~CRF~enCRfSHG 162 (486)
T KOG2185|consen 142 PCKFFLE-GRCRFGENCRFSHG 162 (486)
T ss_pred cchHhhc-cccccCcccccccC
Confidence 6999998 99999999998885
No 147
>KOG1677|consensus
Probab=69.10 E-value=2.1 Score=37.20 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=22.8
Q ss_pred CCccccceecCcCC-CCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRH-GDRCSRIHNKPTF 27 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~-g~~C~~~H~~P~~ 27 (189)
..|.+|.++|.|++ |++|-..|-.-..
T Consensus 133 ~lc~~~~~~g~c~y~ge~crfah~~~e~ 160 (332)
T KOG1677|consen 133 PLCRSFRKSGTCKYRGEQCRFAHGLEEL 160 (332)
T ss_pred CcceeeecCccccccCchhhhcCCcccc
Confidence 36999999999999 9999987765554
No 148
>KOG0153|consensus
Probab=65.15 E-value=3 Score=37.26 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=27.3
Q ss_pred hhhhcccccCCCCCCCCCceeeecCCCHHHHH
Q psy12245 139 EACCRQYEMGECTRSGFCNFMHLKPISRELRR 170 (189)
Q Consensus 139 ~~~c~~~~~~~c~rg~~Cn~~h~~~~~~~l~~ 170 (189)
.-+|..|..|+|.||..|.|-|-+|+.+.|..
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEkp~d~~L~~ 192 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEKPPDDPLSL 192 (377)
T ss_pred CccccceeeccccccccccccccCCCCcchhh
Confidence 35899999999999999999999997766643
No 149
>KOG0129|consensus
Probab=64.85 E-value=26 Score=32.90 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=48.0
Q ss_pred cCCCCCCCCCCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeC
Q psy12245 12 CRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN 91 (189)
Q Consensus 12 Cr~g~~C~~~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~ 91 (189)
|--|..+.+.+.-|..|+-|.+..+.. .+++++ |..-| ..||.+. |..+
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGlp~----------------dise~~-----------i~~~F-~~FGs~~---VdWP 291 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGLPW----------------DITEAQ-----------INASF-GQFGSVK---VDWP 291 (520)
T ss_pred hhccccCCCCCCccccccceeecCCCc----------------cccHHH-----------HHhhc-ccccceE---eecC
Confidence 556788888899999999888887765 345544 44455 6888763 3322
Q ss_pred --CC----CCeee---EEEEEecCHHHHHH
Q psy12245 92 --LG----DHLVG---NVYIKFRREEDAEK 112 (189)
Q Consensus 92 --~~----~~~~G---~vfV~F~~~e~A~~ 112 (189)
.+ -.++| +||+.|+++.+-..
T Consensus 292 ~k~~~~~~~ppkGs~~YvflvFe~E~sV~~ 321 (520)
T KOG0129|consen 292 GKANSRGRAPPKGSYGYVFLVFEDERSVQS 321 (520)
T ss_pred CCccccccCCCCCcccEEEEEecchHHHHH
Confidence 11 24566 99999999876553
No 150
>KOG0804|consensus
Probab=64.25 E-value=10 Score=34.99 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCe
Q psy12245 80 YGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR 125 (189)
Q Consensus 80 fG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR 125 (189)
.-.|.+|.|.++. ...+=.|-|+|.+.++|..-.+.+||+.|+.-
T Consensus 99 ~~~I~~irivRd~-~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 99 IKQISDIRIVRDG-MPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred hhhhheeEEeecC-CCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 3468999999853 23355799999999999999999999999763
No 151
>KOG4307|consensus
Probab=63.91 E-value=2.4 Score=41.21 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=51.1
Q ss_pred HHHHHHhhcCCCeeE-EEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~-v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
++-..| .+--.|++ |.|..-.++...+.+||.|..++++.+|...-+..+.+-|.|+|.-..+
T Consensus 450 ~~v~~f-~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 450 PPVNKF-MGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred chhhhh-hhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 556666 46667877 6666555678899999999999999999998888888999999987644
No 152
>KOG4019|consensus
Probab=62.89 E-value=11 Score=30.84 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=34.0
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCCEeCCe-eEEEEeccC
Q psy12245 96 LVGNVYIKFRREEDAEKAVNDLNNRWFGGR-PVYAELSPV 134 (189)
Q Consensus 96 ~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR-~I~v~~~~~ 134 (189)
+.++|-|-|.+.+.|..|...++++.|.|. .++..|++.
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 478899999999999999999999999999 677766643
No 153
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=62.01 E-value=29 Score=27.07 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHHHh-hcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q psy12245 68 FFEDVFVECE-DKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 119 (189)
Q Consensus 68 ~~eDI~~e~e-~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnG 119 (189)
+.+.|....+ .... |.++.++.. ..|++||+-...+++..+++.+.|
T Consensus 21 V~~~L~~~~~~~~~~-i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 21 VALMLAMRAKKENLP-IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHHHhCCCc-EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 3344444441 1333 888888875 589999999988999999998876
No 154
>KOG1595|consensus
Probab=58.23 E-value=5.6 Score=37.34 Aligned_cols=22 Identities=36% Similarity=0.893 Sum_probs=19.1
Q ss_pred CCccccceecCcCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHN 23 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~ 23 (189)
|.||=|.| |.|..||.|-.-|-
T Consensus 237 tpCPefrk-G~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 237 TPCPEFRK-GSCERGDSCEYAHG 258 (528)
T ss_pred ccCccccc-CCCCCCCccccccc
Confidence 57898888 99999999988884
No 155
>KOG1763|consensus
Probab=57.47 E-value=4.7 Score=35.32 Aligned_cols=31 Identities=29% Similarity=0.688 Sum_probs=25.4
Q ss_pred cchhhhhcccccCCCCCCCCCceeeecCCCH
Q psy12245 136 DFREACCRQYEMGECTRSGFCNFMHLKPISR 166 (189)
Q Consensus 136 ~f~~~~c~~~~~~~c~rg~~Cn~~h~~~~~~ 166 (189)
+=..-+|-.|..|.|.+|..|+|.|-+.+-+
T Consensus 89 DPKSvvCafFk~g~C~KG~kCKFsHdl~~~~ 119 (343)
T KOG1763|consen 89 DPKSVVCAFFKQGTCTKGDKCKFSHDLAVER 119 (343)
T ss_pred CchHHHHHHHhccCCCCCCcccccchHHHhh
Confidence 3456789999999999999999999865433
No 156
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=56.59 E-value=38 Score=22.71 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.9
Q ss_pred EEEEecCHHHHHHHHHHh
Q psy12245 100 VYIKFRREEDAEKAVNDL 117 (189)
Q Consensus 100 vfV~F~~~e~A~~A~~~L 117 (189)
+=|.|.+.+.|.+|+.+|
T Consensus 45 cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 45 CNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEECCHHHHHHHHHcC
Confidence 668999999999999875
No 157
>KOG0112|consensus
Probab=55.48 E-value=3.3 Score=41.13 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+|+..| ..||.|.+|.|..+.-+...-++||.|.+...|-.|...|.|..+..-.+.+-+-
T Consensus 388 eiR~af-~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 388 EIRPAF-DESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhh-hhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 567778 6999999999988754445678999999999999999999999987666666554
No 158
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=53.80 E-value=4.1 Score=34.70 Aligned_cols=32 Identities=22% Similarity=0.524 Sum_probs=26.4
Q ss_pred hhhhhcccccCCCCCCCCCceeeecCCCHHHH
Q psy12245 138 REACCRQYEMGECTRSGFCNFMHLKPISRELR 169 (189)
Q Consensus 138 ~~~~c~~~~~~~c~rg~~Cn~~h~~~~~~~l~ 169 (189)
+..+|-.|..+.|.+|..|+|+|-+...+...
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~e 115 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTE 115 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcchHHHhhhc
Confidence 45689999999999999999999876555443
No 159
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=51.49 E-value=6.2 Score=32.82 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=25.4
Q ss_pred CCccccceecCcCCCCCCCCCCCCCCCCCeEEe
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKPTFSQTILL 33 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P~~S~~v~l 33 (189)
++|-=|-.||.|-||+.|-..|.+--.--.-.|
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkL 174 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKL 174 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhhhhhccccc
Confidence 368889999999999999999987654333333
No 160
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.53 E-value=68 Score=21.58 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEee
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCD 90 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~ 90 (189)
+.+..+|++.| +..|+|.-+.|-.
T Consensus 5 e~i~~~iR~~f-s~lG~I~vLYvn~ 28 (62)
T PF15513_consen 5 EEITAEIRQFF-SQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHH-HhcCcEEEEEEcc
Confidence 46788999999 7999999888864
No 161
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.73 E-value=79 Score=22.42 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q psy12245 70 EDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 117 (189)
Q Consensus 70 eDI~~e~e~kfG-~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~L 117 (189)
.+|+..+|.-|| +|.+|...... ...-.|||++....+|......+
T Consensus 35 ~eIK~AvE~lf~VkV~~VnT~~~~--~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 35 PDIKRAVEELFDVKVEKVNTLITP--KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred HHHHHHHHHHhCCceEEEEeEEcC--CCcEEEEEEeCCCCcHHHHHHhh
Confidence 356666654566 68888876543 23458999999999998775543
No 162
>PRK13817 ribosome-binding factor A; Provisional
Probab=44.05 E-value=44 Score=25.07 Aligned_cols=76 Identities=9% Similarity=0.181 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH-HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhC---CC--EeCCeeEEEEec
Q psy12245 59 EEMQEHYDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN---NR--WFGGRPVYAELS 132 (189)
Q Consensus 59 ~e~~~~~~~~~-eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~Ln---Gr--~f~GR~I~v~~~ 132 (189)
++++++..++. .+|+..- -++-.|.+|.+..+. ....|||.+-..++...+++.|+ |. ..-|+.|...+.
T Consensus 10 ~~I~reis~il~~ei~dp~-l~~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lR~~ 85 (119)
T PRK13817 10 DLIHQQLAELLKKEVRDSR-LSKISLTAVSISPDL---KQAKVFYSLLENQNEKEVQKALNKATGYLRHLLAQATVLRYV 85 (119)
T ss_pred HHHHHHHHHHHHHhccCCC-CCceEEeEEEECCCC---CEEEEEEEECCCccHHHHHHHHHHhHHHHHHHHHHhCCCeEC
Confidence 34555444444 2444433 245677777777663 46678887754333333444443 31 223455666666
Q ss_pred cCccch
Q psy12245 133 PVTDFR 138 (189)
Q Consensus 133 ~~~~f~ 138 (189)
|+-.|.
T Consensus 86 PeL~F~ 91 (119)
T PRK13817 86 PKLEFV 91 (119)
T ss_pred CEEEEE
Confidence 665553
No 163
>KOG4660|consensus
Probab=41.84 E-value=39 Score=31.97 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCE
Q psy12245 80 YGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRW 121 (189)
Q Consensus 80 fG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~ 121 (189)
.|.=.=+.++.+- +....|+|||.|.+.+++..+.+++||..
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~ 455 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKK 455 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCc
Confidence 4444444555432 23568999999999999999999999975
No 164
>KOG0129|consensus
Probab=41.39 E-value=1.2e+02 Score=28.59 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=31.6
Q ss_pred cCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHH
Q psy12245 79 KYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVND 116 (189)
Q Consensus 79 kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~ 116 (189)
-||-|.=+-|..+. -.-++|-+-|.|.+..+=.+||.+
T Consensus 394 lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 394 LFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred hcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 48999999998773 356789999999999988888764
No 165
>COG3309 VapD Uncharacterized virulence-associated protein D [Function unknown]
Probab=41.17 E-value=59 Score=23.67 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q psy12245 65 YDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 117 (189)
Q Consensus 65 ~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~L 117 (189)
+..-+.||+..+ .++|-. ...|.||+..+..++|..-+..+
T Consensus 21 ~~~aY~Dir~~L-~~~gF~-----------~tQGSVYl~~~~i~~~~~~~~~q 61 (96)
T COG3309 21 YRQAYDDIRRVL-ERHGFE-----------NTQGSVYLNDEGINQAAGTLAAQ 61 (96)
T ss_pred HHHHHHHHHHHH-HHcCcc-----------cccceEEEccchHHHHHHHHHHH
Confidence 457789999999 599965 24899999999888776444433
No 166
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.12 E-value=30 Score=29.71 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=25.5
Q ss_pred EEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 100 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 100 vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|||+|++..+|..|.+.+.... ++.+.++.+|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 6999999999999999776654 35557777644
No 167
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.11 E-value=35 Score=22.97 Aligned_cols=41 Identities=29% Similarity=0.241 Sum_probs=28.8
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhc
Q psy12245 98 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCR 143 (189)
Q Consensus 98 G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~ 143 (189)
...+|.|.+..+|.+|-+.|...-+.++ +.|...--.+.|+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~-----liP~P~~i~~~CG 42 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR-----LIPTPREISAGCG 42 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE-----EeCCChhccCCCC
Confidence 3578999999999999998887666544 3444444344454
No 168
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=39.86 E-value=15 Score=32.52 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.7
Q ss_pred CccccceecCcCCCCCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHNK 24 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~~ 24 (189)
.|.=+.|-|.|++|-+|...|--
T Consensus 276 Pcinwe~sGyc~yg~Rc~F~hgd 298 (351)
T COG5063 276 PCINWEKSGYCPYGLRCCFKHGD 298 (351)
T ss_pred CccchhhcccCccccccccccCC
Confidence 46678999999999999999863
No 169
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=38.01 E-value=55 Score=22.12 Aligned_cols=59 Identities=10% Similarity=0.190 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCC-CeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 70 EDVFVECEDKYG-EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG-~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
++|.+++ ...| +|..|.-+... +..+.-..||+.+...+... .++=+...|..|.++--
T Consensus 2 ~~I~~~L-~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEEL-KDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHH-HHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecC
Confidence 4678888 4788 68888777654 34556678888887765333 45556778888888754
No 170
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=34.52 E-value=57 Score=22.43 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=40.7
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCCC-CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYG-EIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG-~I~~v~i~~~~~-~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.|.+++ .++| +|..|+-+.+.. ..+.-..+|+-....+-.. .|+=+.+.|+.|.|+-.
T Consensus 3 ~I~~~L-~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 3 QIEEAL-KDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHH-HHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 577888 5899 788888887643 3445567777776543333 56777788888888764
No 171
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=32.56 E-value=1.1e+02 Score=22.87 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHHHHHH-HHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC-----HHHHHHHHHHhCC--CEeCCeeEEEEe
Q psy12245 60 EMQEHYD-NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR-----EEDAEKAVNDLNN--RWFGGRPVYAEL 131 (189)
Q Consensus 60 e~~~~~~-~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~-----~e~A~~A~~~LnG--r~f~GR~I~v~~ 131 (189)
+++.... -+..+|+..- -+.+.|.+|.+-.+. ....|||.+-. .+.+.+|++.-.| |.+-|..+...+
T Consensus 13 ~i~~~l~~il~~eikDpr-l~~~~Vt~V~vS~Dl---~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~lr~ 88 (118)
T COG0858 13 QIQKELAEILQREIKDPR-LGLVTVTDVEVSKDL---SHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLRLRK 88 (118)
T ss_pred HHHHHHHHHHHHHccCCC-cCceEEEEEEEcCCC---ceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCCeEe
Confidence 3444333 3334566655 366678888887763 56788888633 2333445554444 234677788888
Q ss_pred ccCccch
Q psy12245 132 SPVTDFR 138 (189)
Q Consensus 132 ~~~~~f~ 138 (189)
.|+-.|.
T Consensus 89 ~PeL~F~ 95 (118)
T COG0858 89 TPELHFV 95 (118)
T ss_pred CCeEEEE
Confidence 8876664
No 172
>KOG1595|consensus
Probab=32.42 E-value=24 Score=33.28 Aligned_cols=25 Identities=24% Similarity=0.773 Sum_probs=21.8
Q ss_pred chhhhhcccccCCCCCCCCCceeee
Q psy12245 137 FREACCRQYEMGECTRSGFCNFMHL 161 (189)
Q Consensus 137 f~~~~c~~~~~~~c~rg~~Cn~~h~ 161 (189)
|..--|-.|-.|.|.+|+.|-|.|-
T Consensus 234 Ys~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 234 YSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred ccCccCcccccCCCCCCCccccccc
Confidence 6667788888999999999999995
No 173
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=32.41 E-value=1.5e+02 Score=21.73 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhcCCC--------eeEEEEeeCCCCCeeeEEEEEecCHHHHHHHH
Q psy12245 64 HYDNFFEDVFVECEDKYGE--------IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 114 (189)
Q Consensus 64 ~~~~~~eDI~~e~e~kfG~--------I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~ 114 (189)
.|.+-..-+...+ ++||- |+.+.=. ..+.-.+-|+|.+.+.|..+.
T Consensus 17 ~y~~Y~~~~~~a~-~~~Ggr~LvRGG~v~~lEG~----w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 17 QYKDYVSKAKPAI-EKFGGRYLVRGGEVETLEGE----WRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HHHHHHHHhHHHH-HHhCCeeEeeCCCeeeccCC----CCcccEEEEEcCCHHHHHHHh
Confidence 4455555555566 46663 2222111 123457889999999888764
No 174
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=32.20 E-value=51 Score=26.38 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=30.8
Q ss_pred CCeeeEEEEEecCHHHHHHHHHHhCCCEeCC-----eeEEEEeccCccch
Q psy12245 94 DHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-----RPVYAELSPVTDFR 138 (189)
Q Consensus 94 ~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~G-----R~I~v~~~~~~~f~ 138 (189)
......|||.|.+.+++..-...++|..|-. -+-.|++++-.++-
T Consensus 52 ~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 52 PPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp TS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS----
T ss_pred CCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchhccc
Confidence 3456789999999999999999999988832 24667787655543
No 175
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=32.17 E-value=25 Score=30.69 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=27.0
Q ss_pred CccccceecCcCCCCCCCCCCCCCCCC----CeEEecCCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHNKPTFS----QTILLLNLYIN 39 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~~P~~S----~~v~l~Nm~~~ 39 (189)
.|.|+.- |+|-.+..|+..|..++.. ..+..+-|...
T Consensus 4 ~~~~~~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 44 (285)
T COG5084 4 VCSFAID-GKCNLGSGCTYNHSNYTSLNDGLQSVSSKYMGAK 44 (285)
T ss_pred hhhhhcc-cccccccccceeeeccccccccccchhhcccchh
Confidence 3566666 9999999999999988853 45555555553
No 176
>KOG1134|consensus
Probab=31.87 E-value=99 Score=30.47 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=31.0
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy12245 96 LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 139 (189)
Q Consensus 96 ~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~ 139 (189)
..|.|||+|.+.-.|+.|.+...++...+=.+.....|.+.++.
T Consensus 304 ~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~ 347 (728)
T KOG1134|consen 304 PLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWD 347 (728)
T ss_pred CCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceec
Confidence 47899999999999999999766665555444444445554443
No 177
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=31.60 E-value=2e+02 Score=21.07 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCC---EeCCeeEEEEeccCc
Q psy12245 59 EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR---WFGGRPVYAELSPVT 135 (189)
Q Consensus 59 ~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr---~f~GR~I~v~~~~~~ 135 (189)
+|+.+.+.++.++|-+|= |=|-+|+.-...+ ...|=+|+ |+++++|++ ...||-. .|+...|++..+++.
T Consensus 14 ~em~~~~~~LA~sI~~eP----GliwKiWten~~t-~eaGGiYL-Fe~e~~A~a-Y~~~h~aRl~~~Gv~~i~~kiFdvn 86 (97)
T PF08803_consen 14 EEMSKAFNDLAESINQEP----GLIWKIWTENEET-GEAGGIYL-FEDEASAEA-YLEMHTARLAAFGVTEIRGKIFDVN 86 (97)
T ss_dssp HHHHHHHHHHHHHHTTST----TEEEEEEEEETTT-TEEEEEEE-ESSHHHHHH-HHHHHHHHHGGGTSS--EEEEEEE-
T ss_pred HHHHHHHHHHHHHHhhCC----CeEEEEEEecCCC-CccceEEE-ECCHHHHHH-HHHHHHHHHHhcCccceEEEEEecc
Confidence 567778888888888544 8899999987643 34666765 999998884 4445422 346667777777554
Q ss_pred c
Q psy12245 136 D 136 (189)
Q Consensus 136 ~ 136 (189)
.
T Consensus 87 ~ 87 (97)
T PF08803_consen 87 E 87 (97)
T ss_dssp H
T ss_pred C
Confidence 3
No 178
>KOG2185|consensus
Probab=31.47 E-value=32 Score=31.59 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=33.7
Q ss_pred eeEEEEeccCccchhhhhcccccCCCCCCCCCceeeecCC
Q psy12245 125 RPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPI 164 (189)
Q Consensus 125 R~I~v~~~~~~~f~~~~c~~~~~~~c~rg~~Cn~~h~~~~ 164 (189)
..+.|-|...+.-....|.-|+.|+|-=|..|.|-|=.-+
T Consensus 126 arvRVlfl~PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 126 ARVRVLFLTPTHESMKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred cceEEEeecCcchhhccchHhhccccccCcccccccCccc
Confidence 3577888888788888999999999999999999996443
No 179
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=31.45 E-value=1.8e+02 Score=21.99 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=26.8
Q ss_pred eeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q psy12245 83 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 119 (189)
Q Consensus 83 I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnG 119 (189)
|..+.++.. ..|++||+.....+...++..+.|
T Consensus 28 ~~~~~vp~~----fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 28 VYSILAPES----LKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred EEEEEccCC----CCcEEEEEEECcHHHHHHHhCCCC
Confidence 556677664 689999999988888888888876
No 180
>KOG1999|consensus
Probab=31.19 E-value=91 Score=31.69 Aligned_cols=46 Identities=22% Similarity=0.441 Sum_probs=35.5
Q ss_pred CeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 82 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 82 ~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+|.+|.... +.+|++||+=..+..-..|++.|-+-+-+ +++.|-.-
T Consensus 199 qI~Sv~a~D----~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lVPik 244 (1024)
T KOG1999|consen 199 QIKSVFAKD----HLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLVPIK 244 (1024)
T ss_pred eEEEEEecc----ccceeEEEEechhHHHHHHHhhhhhheec-cEEEEehh
Confidence 355554443 68999999999999999999999887755 77766543
No 181
>KOG2193|consensus
Probab=31.17 E-value=6.6 Score=36.19 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 139 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~ 139 (189)
-+|..-+...||.|+.+.+... +...-.+-|+|...+.+..|+..|||..+....+.+.|.|-..-..
T Consensus 94 wevld~Ll~qyg~ve~~eqvnt--~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~q 161 (584)
T KOG2193|consen 94 WEVLDSLLAQYGTVENCEQVNT--DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNAQ 161 (584)
T ss_pred HHHHHHHHhccCCHhHhhhhcc--chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhhc
Confidence 3555555589999999887532 2234566789999999999999999999999999999987654443
No 182
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=30.41 E-value=1.9e+02 Score=20.09 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=30.5
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q psy12245 71 DVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL 117 (189)
Q Consensus 71 DI~~e~e~kfG-~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~L 117 (189)
+|+..+|.-|| +|.+|...... ...-.|||++.....|......+
T Consensus 29 eIK~avE~lf~VkV~~Vnt~~~~--~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 29 DIKRAVEKLFDVKVEKVNTLITP--RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred HHHHHHHHHhCCceEEEEeEEcC--CCceEEEEEECCCCcHHHHHHhh
Confidence 55556654466 67777776442 23458999999999888766544
No 183
>KOG4849|consensus
Probab=30.05 E-value=57 Score=29.55 Aligned_cols=71 Identities=11% Similarity=0.190 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCC--CeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC---ccchhhh
Q psy12245 70 EDVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV---TDFREAC 141 (189)
Q Consensus 70 eDI~~e~e~kfG--~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~---~~f~~~~ 141 (189)
+|+.+.+ ..-| .+.+|+...|. ++.++|++.|...+..+..+-++.|-.+.+.|..-+|.-++. .+|+.+.
T Consensus 95 ~DL~~A~-~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK~~~ak~E~~~ 171 (498)
T KOG4849|consen 95 ADLLKAL-QSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNKTNQAKLEDAQ 171 (498)
T ss_pred HHHHHHH-HhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccchhhHHHHHHHH
Confidence 3555555 2455 57777777774 578999999999999999999999999999998766655543 3454443
No 184
>KOG1492|consensus
Probab=29.87 E-value=23 Score=30.10 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=21.4
Q ss_pred hhhhhcccccCCCCCCCCCceeeecCC
Q psy12245 138 REACCRQYEMGECTRSGFCNFMHLKPI 164 (189)
Q Consensus 138 ~~~~c~~~~~~~c~rg~~Cn~~h~~~~ 164 (189)
+..+|-+|+.|.|.+.+-||+.|...+
T Consensus 232 rkticpkflngrcnkaedcnlsheldp 258 (377)
T KOG1492|consen 232 RKTICPKFLNGRCNKAEDCNLSHELDP 258 (377)
T ss_pred ccccChHHhcCccCchhcCCcccccCc
Confidence 456788888899999888998887554
No 185
>KOG1763|consensus
Probab=29.05 E-value=17 Score=31.94 Aligned_cols=25 Identities=36% Similarity=0.935 Sum_probs=20.4
Q ss_pred CCccccceecCcCCCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKPT 26 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P~ 26 (189)
|.|.||-. |-|-.|++|-..|-.-.
T Consensus 93 vvCafFk~-g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 93 VVCAFFKQ-GTCTKGDKCKFSHDLAV 117 (343)
T ss_pred HHHHHHhc-cCCCCCCcccccchHHH
Confidence 56888755 99999999999997544
No 186
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.23 E-value=2.7e+02 Score=26.67 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhC--CCEe------CCeeEEEEeccC
Q psy12245 67 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN--NRWF------GGRPVYAELSPV 134 (189)
Q Consensus 67 ~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~Ln--Gr~f------~GR~I~v~~~~~ 134 (189)
+|.+.|.+.+ ..-+-|.+|.+..+ |++.+......-+......+. +..| .|+.|.++|++.
T Consensus 58 eiA~~i~~~l-~~~~~~~~veiaGp------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa 126 (577)
T COG0018 58 EIAEEIAEKL-DTDEIIEKVEIAGP------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA 126 (577)
T ss_pred HHHHHHHHhc-cccCcEeEEEEcCC------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC
Confidence 5677888888 46667889998754 788888877666666666665 5555 578999999843
No 187
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=28.12 E-value=81 Score=23.41 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=27.4
Q ss_pred cCCCeeEEEEee-CCCCCeeeEEEEEecCHHHHHHHHHHh
Q psy12245 79 KYGEIEEMNVCD-NLGDHLVGNVYIKFRREEDAEKAVNDL 117 (189)
Q Consensus 79 kfG~I~~v~i~~-~~~~~~~G~vfV~F~~~e~A~~A~~~L 117 (189)
.||++.+..-.. -..+...-+.+++|.+.+++..|...|
T Consensus 47 P~Gk~T~F~rAVkA~ddE~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 47 PYGKLTDFPRAVKAKDDEEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred CCCcccchhhhhhccCCcEEEEEEEEcCchhHHHHHHHHh
Confidence 466666654432 233577889999999999888777654
No 188
>KOG2494|consensus
Probab=28.06 E-value=27 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.888 Sum_probs=17.5
Q ss_pred hcccccCCCCCCCCCceeeecC
Q psy12245 142 CRQYEMGECTRSGFCNFMHLKP 163 (189)
Q Consensus 142 c~~~~~~~c~rg~~Cn~~h~~~ 163 (189)
|-.++.|.|.|-. |.|+|.-+
T Consensus 74 C~Ds~kgrCsR~n-CkylHpp~ 94 (331)
T KOG2494|consen 74 CFDSQKGRCSREN-CKYLHPPQ 94 (331)
T ss_pred EeccccCccCccc-ceecCCCh
Confidence 7788899999955 99999743
No 189
>PRK13818 ribosome-binding factor A; Provisional
Probab=27.58 E-value=1.7e+02 Score=22.00 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHHHH-HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC--HH---HHHHHHHHhCCC--EeCCeeEEEEe
Q psy12245 60 EMQEHYDNFF-EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR--EE---DAEKAVNDLNNR--WFGGRPVYAEL 131 (189)
Q Consensus 60 e~~~~~~~~~-eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~--~e---~A~~A~~~LnGr--~f~GR~I~v~~ 131 (189)
+++++..++. .+|+..- -++-.|.+|.+..+. .-..|||.+-. .. .+.++++...|. ..-++.|...+
T Consensus 11 ~i~reis~ii~~ei~Dpr-l~~vtVt~V~lS~Dl---~~AkVyvs~~~~~~~~~~~~~~~L~~a~g~iR~~la~~l~lR~ 86 (121)
T PRK13818 11 EILRELTKILRKNIRDPR-LSDVTITAVECTNDL---SYATVYYSLLTEDEAKEKEVQEGLEKAKGMMRHLLGQTLTVYK 86 (121)
T ss_pred HHHHHHHHHHHHhCcCCC-cCceEEeEEEECCCC---CEEEEEEEeCCCchhHHHHHHHHHHHhHHHHHHHHHhhCCCeE
Confidence 4444443332 3344433 245677777777663 56788998864 22 344455544442 22345566666
Q ss_pred ccCccc
Q psy12245 132 SPVTDF 137 (189)
Q Consensus 132 ~~~~~f 137 (189)
.|+-.|
T Consensus 87 ~P~L~F 92 (121)
T PRK13818 87 VPELIF 92 (121)
T ss_pred CCEEEE
Confidence 666555
No 190
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=27.26 E-value=1.6e+02 Score=21.92 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=36.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC----HHHHHHHHHHhCCC--EeCCeeEEEEec
Q psy12245 60 EMQEHYDNFFE-DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR----EEDAEKAVNDLNNR--WFGGRPVYAELS 132 (189)
Q Consensus 60 e~~~~~~~~~e-DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~----~e~A~~A~~~LnGr--~f~GR~I~v~~~ 132 (189)
++++...++.. +|.... -..-.|.+|.+..+ .....|||..-. .+++.++++...|. ..-++.|...+.
T Consensus 14 ~i~~~is~il~~~i~d~~-~~~vtIt~V~vS~D---l~~AkVyvs~~~~~~~~~~~~~~L~~~~~~iR~~la~~l~lr~~ 89 (120)
T PRK00521 14 QIQRELAEILQREIKDPR-LGMVTVTDVEVSPD---LAHAKVYVTVLGDEEDKEEALAALKKAAGFLRSELGKRLRLRYV 89 (120)
T ss_pred HHHHHHHHHHHHHccCCC-CCeeEEEEEEECCC---CCEEEEEEEECCCchhHHHHHHHHHHhHHHHHHHHHhhCCCccC
Confidence 34544444433 444333 12345666666555 356788888853 23444444444332 123444555555
Q ss_pred cCccc
Q psy12245 133 PVTDF 137 (189)
Q Consensus 133 ~~~~f 137 (189)
|+-.|
T Consensus 90 P~L~F 94 (120)
T PRK00521 90 PELRF 94 (120)
T ss_pred CEEEE
Confidence 55444
No 191
>KOG0105|consensus
Probab=27.02 E-value=1.5e+02 Score=24.65 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=36.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG 124 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~G 124 (189)
|+++.. -+-|.|-=..|.++ |..-|+|...++-+-|++.|+...|..
T Consensus 131 DLKDHm-ReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 131 DLKDHM-REAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred HHHHHH-HhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccC
Confidence 556666 46788766666664 677899999999999999999998854
No 192
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=26.35 E-value=1.7e+02 Score=21.58 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=29.4
Q ss_pred CeeEEEEeeCCCCCeeeEEEEEecC-HHHHHHHHHHhCCC-----EeCCeeEEEEeccCccc
Q psy12245 82 EIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLNNR-----WFGGRPVYAELSPVTDF 137 (189)
Q Consensus 82 ~I~~v~i~~~~~~~~~G~vfV~F~~-~e~A~~A~~~LnGr-----~f~GR~I~v~~~~~~~f 137 (189)
+|.+|.+..+ -....|||.+-. .++..++++.|+.. ..-|+.|...+.|+-.|
T Consensus 34 tVt~V~lS~D---l~~AkVyvs~~~~~~~~~~~l~~L~~~~g~iR~~l~k~l~lR~~P~L~F 92 (114)
T TIGR00082 34 TVTKVEVSKD---LQHAKVFVDCYGDEEAIDRVVKALNKAKGFIRSLLGQAMRLRKTPELHF 92 (114)
T ss_pred EEeEEEECCC---CCEEEEEEEECCChhhHHHHHHHHHHHHHHHHHHHHhhCCceECCEEEE
Confidence 5666666555 357788998863 33334444444431 12345556666666555
No 193
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=25.58 E-value=3e+02 Score=21.65 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q psy12245 60 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 119 (189)
Q Consensus 60 e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnG 119 (189)
+.++.++.|...|..-+. . .+.++.+-.. .+-+.|.|+|.-+.+|..-++.|--
T Consensus 14 ~~~~~ld~i~~~l~~L~~-~--~~~~l~~~~~---~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 14 MFQYKLDDIKNWLASLYK-P--RISDLKVRKV---EPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred hhHHHHHHHHHHHHHHHh-c--ccccceeecc---ccCceEEEEEechHHHHHHHHHHhh
Confidence 345667788888887772 3 3344544332 3567899999999999988888854
No 194
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=25.42 E-value=29 Score=28.94 Aligned_cols=65 Identities=26% Similarity=0.458 Sum_probs=40.4
Q ss_pred EEEEEecCHHHHHHHHHH-----------hCCCEe-C-C---eeEEEEeccCccchhhhhcccc-cCCCCCCCCCceeee
Q psy12245 99 NVYIKFRREEDAEKAVND-----------LNNRWF-G-G---RPVYAELSPVTDFREACCRQYE-MGECTRSGFCNFMHL 161 (189)
Q Consensus 99 ~vfV~F~~~e~A~~A~~~-----------LnGr~f-~-G---R~I~v~~~~~~~f~~~~c~~~~-~~~c~rg~~Cn~~h~ 161 (189)
-+.+-|+..+-|.+|-.. |.|+.= - . .+-.+..--+-+|..-+|..|- .|-|.-|+.|.|+|.
T Consensus 85 E~lL~~~~~~LA~ka~~~~~~~~Ne~~~~m~~k~~~~~K~~~~Pt~~r~~~viD~qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 85 EDLLNFERKELAEKAKKRRPSDDNELVLNMSGKNKRLTKQINQPTMFRDGEVIDTQPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred HHHhCCCCHHHHHHHhhcCCccchHHHHhccccchhhhhhccCCceeeccceeecCcccccchhhcccccCCchhhhhhh
Confidence 355778888888887652 222210 0 0 0112222234567778899875 568999999999998
Q ss_pred cC
Q psy12245 162 KP 163 (189)
Q Consensus 162 ~~ 163 (189)
..
T Consensus 165 R~ 166 (259)
T COG5152 165 RS 166 (259)
T ss_pred hh
Confidence 43
No 195
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=24.68 E-value=85 Score=22.02 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=19.0
Q ss_pred eeEEEEEecCHHHHHHHHHHhCC
Q psy12245 97 VGNVYIKFRREEDAEKAVNDLNN 119 (189)
Q Consensus 97 ~G~vfV~F~~~e~A~~A~~~LnG 119 (189)
.|++||+..-.+++..++..+.|
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCC
Confidence 39999999877777888887776
No 196
>PRK11118 putative monooxygenase; Provisional
Probab=24.24 E-value=3e+02 Score=20.31 Aligned_cols=72 Identities=25% Similarity=0.314 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCC---EeCCeeEEEEeccCc
Q psy12245 59 EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR---WFGGRPVYAELSPVT 135 (189)
Q Consensus 59 ~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr---~f~GR~I~v~~~~~~ 135 (189)
+|+.+.+.++.++|-+|= |-|=+|+.-...+ +..|=+|+ |+++++|++=++ ||-. .|+-..|.+..+++.
T Consensus 17 ~em~~~~~~LA~sI~~Ep----GliWKIWTen~~t-~eaGGiYl-F~~e~~a~aYl~-mH~aRL~~~Gv~~v~~kiFdin 89 (100)
T PRK11118 17 EEMAKALKPLAESINEEP----GFIWKIWTENEKT-QEAGGIYL-FEDEASAEAYLE-MHTARLKNFGVEEVRAKIFDVN 89 (100)
T ss_pred HHHHHHHHHHHHHHhcCC----CceEEEeecCCCC-cccceEEE-ECCHHHHHHHHH-HHHHHHHhcCCCeeEEEEEecc
Confidence 567788889999998654 8999999876543 34566664 999888875443 4432 346677888877654
Q ss_pred cc
Q psy12245 136 DF 137 (189)
Q Consensus 136 ~f 137 (189)
.=
T Consensus 90 ~~ 91 (100)
T PRK11118 90 EP 91 (100)
T ss_pred Cc
Confidence 43
No 197
>KOG2333|consensus
Probab=22.55 E-value=38 Score=31.96 Aligned_cols=27 Identities=22% Similarity=0.467 Sum_probs=22.0
Q ss_pred CCccccceecCcCCCCCCC--CCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCS--RIHNKPTF 27 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~--~~H~~P~~ 27 (189)
+.|++|.--|.|.+|-+|- ..|..+..
T Consensus 115 ~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g 143 (614)
T KOG2333|consen 115 PSCPVFESLGFCPYGFKCRFLGAHLDIEG 143 (614)
T ss_pred CccceeeccccCCccceeehhhcccCccc
Confidence 4699999999999999994 45666654
No 198
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=20.99 E-value=59 Score=28.36 Aligned_cols=24 Identities=33% Similarity=0.920 Sum_probs=11.3
Q ss_pred CCccccceecCcCCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKP 25 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P 25 (189)
|+|.||.. |-|..|..|...|-.+
T Consensus 105 V~c~~~~~-g~c~s~~~c~~lh~~d 128 (285)
T COG5084 105 VVCKFFLR-GLCKSGFSCEFLHEYD 128 (285)
T ss_pred cccchhcc-ccCcCCCccccccCCC
Confidence 34444433 5555555555544444
No 199
>KOG4791|consensus
Probab=20.34 E-value=44 Score=31.47 Aligned_cols=26 Identities=15% Similarity=-0.067 Sum_probs=22.9
Q ss_pred CCccccceecCcCCCCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKPTF 27 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P~~ 27 (189)
+.|.||.| |.|--||.|+..|.+|..
T Consensus 119 ~P~l~~~K-~~e~~~D~~s~Lh~P~A~ 144 (667)
T KOG4791|consen 119 SPQLRSVK-KVESSEDVPSPLHPPVAI 144 (667)
T ss_pred chHHHHhh-hhhhhccccccCCCCccc
Confidence 57999999 999999999999987654
Done!