Query psy12245
Match_columns 189
No_of_seqs 240 out of 1491
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:29:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_A Splicing factor U2AF 35 99.9 2.5E-26 8.5E-31 168.7 8.2 103 28-133 1-104 (104)
2 3s6e_A RNA-binding protein 39; 99.9 2.9E-25 9.8E-30 166.1 9.9 100 23-143 2-101 (114)
3 3v4m_A Splicing factor U2AF 65 99.9 4.7E-25 1.6E-29 162.2 9.7 97 26-140 3-102 (105)
4 3ue2_A Poly(U)-binding-splicin 99.9 2E-24 6.7E-29 162.4 6.5 93 25-140 17-114 (118)
5 2pe8_A Splicing factor 45; RRM 99.9 2.2E-23 7.6E-28 153.3 9.4 96 23-141 3-100 (105)
6 2dit_A HIV TAT specific factor 99.9 3.9E-22 1.3E-26 147.0 11.0 103 16-138 3-106 (112)
7 3u1l_A PRE-mRNA-splicing facto 99.8 4.5E-19 1.5E-23 148.0 9.6 126 2-134 72-228 (240)
8 3dxb_A Thioredoxin N-terminall 99.8 2.1E-18 7.2E-23 140.2 9.3 93 25-140 121-218 (222)
9 3s8s_A Histone-lysine N-methyl 99.6 1.1E-14 3.6E-19 107.3 11.8 84 25-136 3-87 (110)
10 4fxv_A ELAV-like protein 1; RN 99.6 3.1E-14 1.1E-18 102.7 11.9 62 71-133 35-97 (99)
11 4f25_A Polyadenylate-binding p 99.6 3.2E-14 1.1E-18 104.8 11.0 81 25-134 2-82 (115)
12 2do4_A Squamous cell carcinoma 99.6 1.1E-13 3.7E-18 98.8 13.2 84 23-134 12-95 (100)
13 2cqc_A Arginine/serine-rich sp 99.5 7.4E-14 2.5E-18 98.4 12.0 84 22-133 9-93 (95)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.5 4.2E-14 1.4E-18 97.7 10.3 80 25-132 4-84 (85)
15 3ns6_A Eukaryotic translation 99.5 2.4E-14 8.1E-19 103.0 9.3 84 27-132 5-90 (100)
16 2ywk_A Putative RNA-binding pr 99.5 5.5E-14 1.9E-18 99.2 10.9 81 25-133 13-93 (95)
17 2nlw_A Eukaryotic translation 99.5 2.3E-14 7.7E-19 103.9 8.6 88 27-137 14-103 (105)
18 3ulh_A THO complex subunit 4; 99.5 1.2E-13 4.1E-18 99.6 11.9 80 26-133 27-106 (107)
19 2krb_A Eukaryotic translation 99.5 1E-14 3.5E-19 100.6 5.9 79 28-129 1-80 (81)
20 2dnz_A Probable RNA-binding pr 99.5 8.7E-14 3E-18 98.1 10.7 82 25-134 2-84 (95)
21 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.4E-13 4.9E-18 95.4 11.5 79 27-133 5-84 (87)
22 2d9p_A Polyadenylate-binding p 99.5 1.3E-13 4.4E-18 98.9 11.4 83 23-134 10-92 (103)
23 2lxi_A RNA-binding protein 10; 99.5 1.7E-14 5.9E-19 102.3 6.3 78 28-133 1-81 (91)
24 3md1_A Nuclear and cytoplasmic 99.5 2.3E-13 7.8E-18 93.5 11.8 63 71-134 17-80 (83)
25 2e5h_A Zinc finger CCHC-type a 99.5 9.4E-14 3.2E-18 97.8 10.0 82 23-132 11-93 (94)
26 1whw_A Hypothetical protein ri 99.5 1.1E-13 3.8E-18 98.4 10.4 82 25-134 5-87 (99)
27 2do0_A HnRNP M, heterogeneous 99.5 3.2E-13 1.1E-17 98.4 13.1 84 23-134 10-93 (114)
28 2la6_A RNA-binding protein FUS 99.5 1.8E-13 6.1E-18 97.6 11.5 83 22-132 7-98 (99)
29 2cq0_A Eukaryotic translation 99.5 2.1E-13 7.1E-18 97.8 11.8 83 24-134 11-94 (103)
30 2x1f_A MRNA 3'-END-processing 99.5 1.7E-13 5.7E-18 97.3 11.1 81 27-135 1-82 (96)
31 2dnh_A Bruno-like 5, RNA bindi 99.5 2.7E-13 9.3E-18 97.4 12.2 83 24-134 11-96 (105)
32 1x5t_A Splicing factor 3B subu 99.5 9.2E-14 3.2E-18 98.2 9.3 82 25-134 2-85 (96)
33 2cq3_A RNA-binding protein 9; 99.5 4.1E-13 1.4E-17 96.3 12.5 83 23-134 10-92 (103)
34 1sjq_A Polypyrimidine tract-bi 99.5 8E-14 2.7E-18 102.5 8.9 81 21-134 9-91 (105)
35 1x4c_A Splicing factor, argini 99.5 2.5E-13 8.5E-18 98.7 11.5 73 27-133 14-91 (108)
36 2fy1_A RNA-binding motif prote 99.5 2.2E-13 7.5E-18 100.6 11.2 84 25-136 4-87 (116)
37 2dgo_A Cytotoxic granule-assoc 99.5 4.6E-13 1.6E-17 97.8 12.8 83 24-134 11-94 (115)
38 3r27_A HnRNP L, heterogeneous 99.5 1.7E-13 5.8E-18 100.0 10.0 76 26-134 19-96 (100)
39 2a3j_A U1 small nuclear ribonu 99.5 1.5E-13 5E-18 104.0 9.9 82 27-134 28-109 (127)
40 2e5j_A Methenyltetrahydrofolat 99.5 1.6E-13 5.4E-18 97.7 9.5 93 10-134 1-93 (97)
41 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.4E-13 4.6E-18 98.5 9.2 82 25-134 9-91 (102)
42 2cpi_A CCR4-NOT transcription 99.5 2.5E-13 8.5E-18 99.3 10.7 88 22-134 9-100 (111)
43 1x5u_A Splicing factor 3B subu 99.5 2.4E-13 8.4E-18 97.6 10.5 83 24-134 11-94 (105)
44 2cph_A RNA binding motif prote 99.5 3.2E-13 1.1E-17 97.2 10.8 84 23-134 10-96 (107)
45 2cpz_A CUG triplet repeat RNA- 99.5 4.7E-13 1.6E-17 97.9 11.8 81 26-134 23-104 (115)
46 2dgx_A KIAA0430 protein; RRM d 99.5 3.9E-13 1.3E-17 95.7 10.9 82 27-134 8-89 (96)
47 2cpf_A RNA binding motif prote 99.5 3.8E-13 1.3E-17 95.5 10.5 81 26-134 3-87 (98)
48 2cqi_A Nucleolysin TIAR; RNA r 99.5 7.9E-13 2.7E-17 94.8 12.1 82 24-134 11-92 (103)
49 1s79_A Lupus LA protein; RRM, 99.5 2.1E-13 7.3E-18 99.2 9.0 82 22-132 5-86 (103)
50 1x5s_A Cold-inducible RNA-bind 99.5 3.2E-13 1.1E-17 96.5 9.8 84 23-134 7-91 (102)
51 1p27_B RNA-binding protein 8A; 99.5 4.4E-13 1.5E-17 96.4 10.6 79 27-133 22-101 (106)
52 2kt5_A RNA and export factor-b 99.5 4.2E-13 1.4E-17 99.5 10.7 82 25-134 32-113 (124)
53 2dnm_A SRP46 splicing factor; 99.5 3.6E-13 1.2E-17 96.5 9.9 82 25-134 10-92 (103)
54 2dgv_A HnRNP M, heterogeneous 99.5 5.6E-13 1.9E-17 93.4 10.6 80 26-134 6-85 (92)
55 2dhg_A TRNA selenocysteine ass 99.5 2.7E-13 9.2E-18 97.2 9.0 82 25-134 6-89 (104)
56 2jrs_A RNA-binding protein 39; 99.5 4.3E-13 1.5E-17 97.9 10.0 81 25-133 23-104 (108)
57 2dng_A Eukaryotic translation 99.5 1E-12 3.5E-17 94.3 11.8 84 21-134 8-92 (103)
58 2dgs_A DAZ-associated protein 99.5 7.5E-13 2.6E-17 94.2 11.0 81 25-134 7-88 (99)
59 1x4a_A Splicing factor, argini 99.4 8.6E-13 2.9E-17 95.6 11.3 81 24-134 18-98 (109)
60 2lkz_A RNA-binding protein 5; 99.4 1.5E-13 5.1E-18 98.8 7.1 79 27-133 8-93 (95)
61 2wbr_A GW182, gawky, LD47780P; 99.4 3.2E-13 1.1E-17 96.6 8.4 60 71-136 23-82 (89)
62 2kxn_B Transformer-2 protein h 99.4 3.3E-13 1.1E-17 101.7 8.9 83 24-134 42-125 (129)
63 1wi8_A EIF-4B, eukaryotic tran 99.4 7.4E-13 2.5E-17 95.2 10.3 84 21-134 8-93 (104)
64 2err_A Ataxin-2-binding protei 99.4 5E-13 1.7E-17 97.5 9.5 83 23-134 24-106 (109)
65 1oo0_B CG8781-PA, drosophila Y 99.4 7.7E-13 2.6E-17 95.9 10.3 79 27-133 25-104 (110)
66 1x4d_A Matrin 3; structural ge 99.4 2.8E-13 9.4E-18 98.9 7.9 79 23-134 10-91 (102)
67 2div_A TRNA selenocysteine ass 99.4 8.7E-13 3E-17 93.7 10.3 82 25-134 6-93 (99)
68 1why_A Hypothetical protein ri 99.4 1.2E-12 3.9E-17 93.0 11.0 79 23-134 12-92 (97)
69 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 6.2E-13 2.1E-17 99.8 10.0 80 25-132 60-140 (140)
70 2cq1_A PTB-like protein L; RRM 99.4 1.3E-12 4.3E-17 95.0 11.3 75 27-134 14-90 (101)
71 1nu4_A U1A RNA binding domain; 99.4 3.9E-13 1.3E-17 95.1 8.3 84 25-134 5-88 (97)
72 4a8x_A RNA-binding protein wit 99.4 8.4E-13 2.9E-17 91.5 9.9 79 27-133 3-83 (88)
73 1x4h_A RNA-binding protein 28; 99.4 9.4E-13 3.2E-17 95.3 10.6 82 25-134 12-100 (111)
74 3lqv_A PRE-mRNA branch site pr 99.4 6.3E-13 2.1E-17 97.1 9.6 81 24-134 4-84 (115)
75 3ucg_A Polyadenylate-binding p 99.4 9.5E-13 3.2E-17 91.6 10.1 78 28-134 6-84 (89)
76 2dgw_A Probable RNA-binding pr 99.4 2.3E-12 8E-17 90.3 12.2 82 23-134 5-86 (91)
77 2khc_A Testis-specific RNP-typ 99.4 6.7E-13 2.3E-17 97.4 9.5 61 71-132 56-117 (118)
78 1whx_A Hypothetical protein ri 99.4 2.9E-13 1E-17 99.2 7.6 79 27-138 9-87 (111)
79 2ytc_A PRE-mRNA-splicing facto 99.4 1E-12 3.5E-17 90.8 9.9 77 23-132 7-84 (85)
80 1wex_A Hypothetical protein (r 99.4 7.4E-13 2.5E-17 96.7 9.6 79 25-136 12-92 (104)
81 2cpe_A RNA-binding protein EWS 99.4 9E-13 3.1E-17 96.0 10.0 82 25-134 12-102 (113)
82 1u6f_A Tcubp1, RNA-binding pro 99.4 1.3E-12 4.3E-17 98.5 11.1 65 71-136 58-123 (139)
83 2ek1_A RNA-binding protein 12; 99.4 3.4E-13 1.2E-17 95.1 7.3 81 25-133 12-93 (95)
84 3md3_A Nuclear and cytoplasmic 99.4 2.9E-12 9.9E-17 97.2 12.8 81 25-133 84-165 (166)
85 3ex7_B RNA-binding protein 8A; 99.4 7.4E-13 2.5E-17 98.2 9.3 79 27-133 21-100 (126)
86 1p1t_A Cleavage stimulation fa 99.4 5.1E-13 1.7E-17 95.7 8.1 81 27-135 7-88 (104)
87 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.7E-12 9.1E-17 98.7 12.4 81 26-134 37-118 (156)
88 2dgp_A Bruno-like 4, RNA bindi 99.4 8.8E-13 3E-17 94.9 9.0 83 24-134 9-95 (106)
89 2ad9_A Polypyrimidine tract-bi 99.4 8.5E-13 2.9E-17 99.0 9.1 79 25-136 28-108 (119)
90 2cpj_A Non-POU domain-containi 99.4 1.2E-12 4.1E-17 93.3 9.5 78 24-134 11-88 (99)
91 1x5p_A Negative elongation fac 99.4 2.5E-12 8.5E-17 91.4 11.0 58 71-134 29-86 (97)
92 2g4b_A Splicing factor U2AF 65 99.4 2.6E-12 8.8E-17 98.5 11.9 80 25-132 91-171 (172)
93 2cqd_A RNA-binding region cont 99.4 1.9E-12 6.4E-17 94.8 10.6 81 25-134 14-95 (116)
94 1fxl_A Paraneoplastic encephal 99.4 9.7E-12 3.3E-16 94.3 14.8 80 27-134 1-81 (167)
95 1x5o_A RNA binding motif, sing 99.4 4.2E-12 1.4E-16 92.5 12.1 81 25-133 22-110 (114)
96 2dnn_A RNA-binding protein 12; 99.4 6.4E-13 2.2E-17 97.9 7.7 93 19-141 7-99 (109)
97 3s7r_A Heterogeneous nuclear r 99.4 4.6E-12 1.6E-16 87.9 11.6 79 25-132 8-87 (87)
98 3p5t_L Cleavage and polyadenyl 99.4 4.5E-13 1.5E-17 94.2 6.5 62 71-133 17-81 (90)
99 2xnq_A Nuclear polyadenylated 99.4 2.8E-12 9.6E-17 91.7 10.7 77 22-133 16-93 (97)
100 1x4g_A Nucleolysin TIAR; struc 99.4 2.3E-12 8E-17 93.4 10.2 77 25-134 22-98 (109)
101 2diu_A KIAA0430 protein; struc 99.4 1.3E-12 4.6E-17 94.4 8.7 75 27-134 7-83 (96)
102 2cqp_A RNA-binding protein 12; 99.4 8.6E-13 3E-17 93.6 7.5 81 25-133 12-93 (98)
103 2db1_A Heterogeneous nuclear r 99.4 9.4E-13 3.2E-17 97.5 8.0 86 25-139 14-102 (118)
104 1x4f_A Matrin 3; structural ge 99.4 1.3E-12 4.6E-17 96.9 8.7 90 13-134 10-101 (112)
105 2dnq_A RNA-binding protein 4B; 99.4 2.7E-12 9.2E-17 89.9 9.8 75 25-134 5-79 (90)
106 1x4e_A RNA binding motif, sing 99.4 3.5E-13 1.2E-17 93.3 4.9 80 25-132 2-82 (85)
107 2cq2_A Hypothetical protein LO 99.4 1.7E-12 5.8E-17 96.8 8.8 61 71-137 43-108 (114)
108 2jvo_A Nucleolar protein 3; nu 99.4 3.4E-12 1.2E-16 93.2 10.2 75 25-134 28-102 (108)
109 2cq4_A RNA binding motif prote 99.4 1.9E-12 6.5E-17 94.5 8.9 62 71-134 41-103 (114)
110 2j76_E EIF-4B, EIF4B, eukaryot 99.4 8.7E-13 3E-17 94.5 6.9 80 25-134 16-97 (100)
111 2dgt_A RNA-binding protein 30; 99.4 4.8E-12 1.6E-16 89.0 10.6 76 24-134 6-81 (92)
112 1wel_A RNA-binding protein 12; 99.4 9.7E-13 3.3E-17 97.8 7.3 88 21-137 18-106 (124)
113 1rk8_A CG8781-PA, CG8781-PA pr 99.4 5.7E-12 1.9E-16 98.1 12.0 78 27-132 71-149 (165)
114 2la4_A Nuclear and cytoplasmic 99.4 1.7E-12 5.8E-17 92.7 8.3 76 25-133 24-99 (101)
115 2dnp_A RNA-binding protein 14; 99.4 3.2E-12 1.1E-16 89.5 9.5 76 24-134 5-80 (90)
116 2dgu_A Heterogeneous nuclear r 99.4 5.1E-12 1.7E-16 90.7 10.8 74 26-134 9-82 (103)
117 2dh8_A DAZ-associated protein 99.4 3E-12 1E-16 92.0 9.5 80 25-133 13-93 (105)
118 2cpy_A RNA-binding protein 12; 99.4 1.7E-12 5.8E-17 95.2 8.2 87 23-138 10-97 (114)
119 1wez_A HnRNP H', FTP-3, hetero 99.4 2.5E-12 8.6E-17 93.0 9.0 83 22-134 9-91 (102)
120 1wg5_A Heterogeneous nuclear r 99.4 2.6E-12 9.1E-17 92.7 9.1 85 25-138 12-97 (104)
121 2fc9_A NCL protein; structure 99.4 3.3E-12 1.1E-16 91.1 9.5 80 24-134 11-90 (101)
122 2kn4_A Immunoglobulin G-bindin 99.4 4.1E-12 1.4E-16 97.5 10.5 82 25-134 67-149 (158)
123 1b7f_A Protein (SXL-lethal pro 99.4 7.6E-12 2.6E-16 95.4 11.9 80 25-132 86-168 (168)
124 3pgw_S U1-70K; protein-RNA com 99.4 4.8E-12 1.6E-16 113.4 12.4 80 27-134 101-181 (437)
125 2jwn_A Embryonic polyadenylate 99.4 3.4E-12 1.2E-16 94.3 9.4 61 71-133 52-113 (124)
126 3n9u_C Cleavage and polyadenyl 99.4 5.7E-12 2E-16 98.0 11.1 63 71-134 71-136 (156)
127 3zzy_A Polypyrimidine tract-bi 99.4 9.7E-12 3.3E-16 94.7 11.9 59 71-134 44-105 (130)
128 3nmr_A Cugbp ELAV-like family 99.3 5.4E-12 1.8E-16 96.6 10.5 79 27-133 94-175 (175)
129 2jvr_A Nucleolar protein 3; RN 99.3 2.6E-12 9E-17 94.9 8.2 78 25-133 25-103 (111)
130 2hgl_A HNRPF protein, heteroge 99.3 1.8E-12 6.3E-17 99.0 7.5 64 71-136 60-126 (136)
131 2mss_A Protein (musashi1); RNA 99.3 1.4E-12 5E-17 88.1 6.2 60 71-132 15-75 (75)
132 2f3j_A RNA and export factor b 99.3 2.9E-12 9.8E-17 101.6 8.9 63 71-134 104-166 (177)
133 2bz2_A Negative elongation fac 99.3 3.4E-12 1.2E-16 95.2 8.8 62 71-138 53-114 (121)
134 1wf1_A RNA-binding protein RAL 99.3 4.9E-12 1.7E-16 91.9 9.4 73 27-133 26-98 (110)
135 1b7f_A Protein (SXL-lethal pro 99.3 1.5E-11 5.3E-16 93.6 12.5 80 27-134 2-82 (168)
136 2yh0_A Splicing factor U2AF 65 99.3 1.1E-11 3.6E-16 97.2 11.7 81 26-134 112-193 (198)
137 2e44_A Insulin-like growth fac 99.3 8.6E-12 2.9E-16 88.1 10.1 78 27-135 14-92 (96)
138 2cpd_A Apobec-1 stimulating pr 99.3 1.3E-11 4.4E-16 87.9 11.0 74 26-134 13-88 (99)
139 3md3_A Nuclear and cytoplasmic 99.3 1.1E-11 3.8E-16 93.9 10.6 63 71-134 16-78 (166)
140 2qfj_A FBP-interacting repress 99.3 1.1E-11 3.9E-16 98.3 11.1 63 71-134 141-204 (216)
141 1wg1_A KIAA1579 protein, homol 99.3 6.4E-12 2.2E-16 87.8 8.5 78 26-137 3-80 (88)
142 2i2y_A Fusion protein consists 99.3 9.7E-12 3.3E-16 95.0 10.0 78 25-134 70-147 (150)
143 3beg_B Splicing factor, argini 99.3 7.5E-12 2.6E-16 92.1 9.0 71 27-131 15-85 (115)
144 2ki2_A SS-DNA binding protein 99.3 1.3E-12 4.5E-17 91.2 4.7 62 71-134 17-79 (90)
145 2cpx_A Hypothetical protein FL 99.3 5.6E-12 1.9E-16 91.9 8.1 82 22-134 19-104 (115)
146 1fjc_A Nucleolin RBD2, protein 99.3 6.1E-12 2.1E-16 88.8 7.9 77 26-134 14-90 (96)
147 2dis_A Unnamed protein product 99.3 8.1E-12 2.8E-16 90.2 8.7 81 26-134 6-91 (109)
148 1uaw_A Mouse-musashi-1; RNP-ty 99.3 4E-12 1.4E-16 86.1 6.6 60 71-132 16-76 (77)
149 2cqg_A TDP-43, TAR DNA-binding 99.3 4.2E-11 1.4E-15 85.6 12.2 79 26-134 13-92 (103)
150 2hvz_A Splicing factor, argini 99.3 4.3E-12 1.5E-16 90.5 7.0 60 71-135 16-75 (101)
151 2lmi_A GRSF-1, G-rich sequence 99.3 1.8E-12 6.3E-17 94.0 4.9 87 23-138 6-95 (107)
152 2rs2_A Musashi-1, RNA-binding 99.3 1.1E-11 3.8E-16 90.3 9.1 80 25-133 22-102 (109)
153 2lea_A Serine/arginine-rich sp 99.3 2.8E-12 9.6E-17 97.2 6.0 64 70-134 62-126 (135)
154 1fxl_A Paraneoplastic encephal 99.3 2.1E-11 7.3E-16 92.4 10.9 61 71-132 104-167 (167)
155 2kvi_A Nuclear polyadenylated 99.3 7E-12 2.4E-16 89.0 7.7 75 25-134 7-82 (96)
156 3tyt_A Heterogeneous nuclear r 99.3 1.2E-11 4.1E-16 99.9 9.8 76 27-133 3-78 (205)
157 1sjr_A Polypyrimidine tract-bi 99.3 2.2E-11 7.6E-16 96.1 10.8 61 71-135 62-124 (164)
158 4f02_A Polyadenylate-binding p 99.3 2.2E-11 7.5E-16 98.0 10.7 62 71-134 119-180 (213)
159 3smz_A Protein raver-1, ribonu 99.3 2.8E-11 9.5E-16 100.6 11.6 85 26-138 182-267 (284)
160 2m2b_A RNA-binding protein 10; 99.3 3.4E-12 1.2E-16 95.8 5.4 79 27-134 22-107 (131)
161 1x4b_A Heterogeneous nuclear r 99.3 2E-11 6.8E-16 89.3 9.4 61 71-133 43-104 (116)
162 2cqh_A IGF-II mRNA-binding pro 99.3 1.2E-11 4.2E-16 86.9 7.8 76 25-134 5-82 (93)
163 4f02_A Polyadenylate-binding p 99.3 5.5E-11 1.9E-15 95.6 12.1 80 27-134 14-94 (213)
164 2e5i_A Heterogeneous nuclear r 99.3 5E-11 1.7E-15 89.9 10.8 58 71-134 41-101 (124)
165 3q2s_C Cleavage and polyadenyl 99.2 2E-11 6.8E-16 100.4 9.1 63 71-134 84-149 (229)
166 3egn_A RNA-binding protein 40; 99.2 3.2E-11 1.1E-15 91.3 9.3 79 25-133 42-128 (143)
167 2dha_A FLJ20171 protein; RRM d 99.2 1.5E-11 5E-16 92.5 7.3 86 26-140 21-110 (123)
168 2fc8_A NCL protein; structure 99.2 6.6E-11 2.3E-15 84.3 10.3 81 23-134 10-91 (102)
169 2xs2_A Deleted in azoospermia- 99.2 2.3E-11 7.8E-16 86.9 7.7 76 27-132 8-83 (102)
170 3pgw_A U1-A; protein-RNA compl 99.2 6.2E-11 2.1E-15 98.4 11.5 83 26-134 7-89 (282)
171 2ghp_A U4/U6 snRNA-associated 99.2 3.8E-11 1.3E-15 100.1 10.0 81 26-134 208-290 (292)
172 1fj7_A Nucleolin RBD1, protein 99.2 2E-12 6.9E-17 92.3 1.7 80 26-134 15-94 (101)
173 2hgn_A Heterogeneous nuclear r 99.2 5.2E-12 1.8E-16 96.9 4.0 64 70-136 61-124 (139)
174 2hzc_A Splicing factor U2AF 65 99.2 4.2E-11 1.4E-15 82.8 8.2 71 27-131 5-86 (87)
175 1l3k_A Heterogeneous nuclear r 99.2 1E-10 3.4E-15 91.4 11.3 62 71-134 120-182 (196)
176 1fje_B Nucleolin RBD12, protei 99.2 5.2E-11 1.8E-15 91.7 9.4 78 25-134 96-173 (175)
177 1iqt_A AUF1, heterogeneous nuc 99.2 1.1E-11 3.7E-16 83.6 4.7 60 71-132 15-75 (75)
178 2cjk_A Nuclear polyadenylated 99.2 2.5E-11 8.7E-16 92.5 7.2 61 71-133 103-164 (167)
179 2lcw_A RNA-binding protein FUS 98.8 1.7E-12 5.7E-17 95.2 0.0 63 71-134 23-94 (116)
180 2voo_A Lupus LA protein; RNA-b 99.2 1.1E-10 3.6E-15 93.7 10.5 60 71-132 125-184 (193)
181 2e5g_A U6 snRNA-specific termi 99.2 1E-10 3.4E-15 82.5 9.1 78 25-135 5-82 (94)
182 1l3k_A Heterogeneous nuclear r 99.2 1.5E-10 5E-15 90.4 10.8 81 25-134 10-91 (196)
183 3pgw_A U1-A; protein-RNA compl 99.2 1.2E-10 4.2E-15 96.5 10.6 58 71-133 223-281 (282)
184 2hgm_A HNRPF protein, heteroge 99.2 2.5E-11 8.4E-16 91.7 5.8 82 24-135 38-121 (126)
185 2qfj_A FBP-interacting repress 99.2 8.3E-11 2.8E-15 93.2 9.1 81 27-135 27-108 (216)
186 1qm9_A Polypyrimidine tract-bi 99.1 1E-10 3.6E-15 92.0 8.1 76 27-134 119-196 (198)
187 2adc_A Polypyrimidine tract-bi 99.1 1.5E-10 5.3E-15 94.0 8.7 77 26-134 32-109 (229)
188 3d2w_A TAR DNA-binding protein 99.1 3.2E-10 1.1E-14 79.8 9.1 76 22-133 5-82 (89)
189 3smz_A Protein raver-1, ribonu 99.1 9.7E-10 3.3E-14 91.2 13.6 80 27-134 94-174 (284)
190 3nmr_A Cugbp ELAV-like family 99.1 3.6E-10 1.2E-14 86.4 9.9 79 27-133 2-86 (175)
191 2j8a_A Histone-lysine N-methyl 99.1 3.3E-10 1.1E-14 86.4 9.2 65 71-136 22-97 (136)
192 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.8E-10 6.1E-15 83.6 7.2 58 70-134 32-89 (100)
193 2adc_A Polypyrimidine tract-bi 99.1 3.4E-10 1.2E-14 91.9 9.5 59 71-134 167-227 (229)
194 3tht_A Alkylated DNA repair pr 99.1 1E-09 3.5E-14 95.8 12.5 118 25-182 15-138 (345)
195 1qm9_A Polypyrimidine tract-bi 99.1 2.1E-10 7.1E-15 90.3 7.1 76 27-134 2-78 (198)
196 2dnl_A Cytoplasmic polyadenyla 99.1 3.5E-10 1.2E-14 82.8 7.0 78 26-134 6-87 (114)
197 3sde_A Paraspeckle component 1 99.0 6.5E-10 2.2E-14 92.0 9.3 76 25-133 19-94 (261)
198 3sde_A Paraspeckle component 1 99.0 1.4E-09 4.7E-14 90.1 10.7 64 71-135 112-179 (261)
199 2ghp_A U4/U6 snRNA-associated 99.0 7.1E-10 2.4E-14 92.4 9.0 83 24-134 113-196 (292)
200 2dnr_A Synaptojanin-1; RRM dom 99.0 1E-09 3.5E-14 78.6 8.4 60 66-134 26-85 (91)
201 2cjk_A Nuclear polyadenylated 99.0 9.5E-10 3.3E-14 83.7 7.9 78 27-134 2-80 (167)
202 3tyt_A Heterogeneous nuclear r 99.0 1.5E-09 5.2E-14 87.5 8.8 76 27-131 122-203 (205)
203 1fje_B Nucleolin RBD12, protei 99.0 1.5E-10 5.3E-15 89.1 2.6 82 24-134 9-90 (175)
204 2g4b_A Splicing factor U2AF 65 99.0 5.8E-09 2E-13 79.6 10.7 73 27-133 3-86 (172)
205 2yh0_A Splicing factor U2AF 65 98.9 2.7E-09 9.3E-14 83.3 8.2 74 27-134 3-87 (198)
206 1ufw_A Synaptojanin 2; RNP dom 98.9 1.9E-09 6.3E-14 77.7 6.1 61 63-132 31-92 (95)
207 1wf0_A TDP-43, TAR DNA-binding 98.9 1.5E-09 5E-14 75.4 5.5 73 26-134 3-77 (88)
208 1owx_A Lupus LA protein, SS-B, 98.2 4.4E-06 1.5E-10 62.6 6.8 57 70-132 34-93 (121)
209 2l9w_A U4/U6 snRNA-associated- 98.0 2.5E-05 8.6E-10 57.6 8.3 73 27-132 20-97 (117)
210 1wey_A Calcipressin 1; structu 97.6 0.00024 8.2E-09 51.7 8.2 60 68-133 23-82 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.3 0.00075 2.6E-08 50.2 6.8 56 70-132 38-94 (119)
212 2cqe_A KIAA1064 protein; CCCH 97.2 0.00032 1.1E-08 50.4 4.1 22 1-23 14-35 (98)
213 2kn4_A Immunoglobulin G-bindin 96.0 0.016 5.3E-07 43.4 6.6 36 85-121 2-37 (158)
214 3p3d_A Nucleoporin 53; structu 96.0 0.0072 2.5E-07 45.6 4.4 61 71-133 22-97 (132)
215 1m9o_A Tristetraproline; Cys3H 95.8 0.0039 1.3E-07 42.0 2.1 24 1-24 13-36 (77)
216 2i2y_A Fusion protein consists 95.7 0.0038 1.3E-07 46.7 1.8 39 95-134 11-50 (150)
217 2cqe_A KIAA1064 protein; CCCH 94.6 0.011 3.8E-07 42.2 1.4 25 1-25 37-61 (98)
218 1m9o_A Tristetraproline; Cys3H 94.4 0.0073 2.5E-07 40.7 0.0 24 2-25 52-75 (77)
219 2rhk_C Cleavage and polyadenyl 93.7 0.017 5.8E-07 38.9 0.8 32 133-164 10-41 (72)
220 2d9n_A Cleavage and polyadenyl 93.7 0.021 7.3E-07 38.7 1.3 30 135-164 6-35 (77)
221 1uw4_A UPF3X; nonsense mediate 93.6 0.55 1.9E-05 32.9 8.5 59 74-133 20-86 (91)
222 2d9n_A Cleavage and polyadenyl 93.5 0.019 6.7E-07 39.0 0.8 24 1-25 11-34 (77)
223 3d2q_A Muscleblind-like protei 93.4 0.019 6.3E-07 38.4 0.6 25 139-163 6-31 (70)
224 3d2n_A Muscleblind-like protei 93.2 0.033 1.1E-06 38.6 1.7 25 139-163 9-34 (83)
225 2d9m_A Zinc finger CCCH-type d 93.2 0.019 6.6E-07 38.5 0.4 21 2-23 22-42 (69)
226 2rhk_C Cleavage and polyadenyl 92.3 0.034 1.2E-06 37.4 0.6 24 1-25 17-40 (72)
227 2rpp_A Muscleblind-like protei 92.1 0.032 1.1E-06 39.2 0.4 27 138-164 16-43 (89)
228 2d9m_A Zinc finger CCCH-type d 91.2 0.057 2E-06 36.2 0.8 28 133-162 16-43 (69)
229 3d2q_A Muscleblind-like protei 90.9 0.045 1.6E-06 36.4 0.1 28 135-163 38-65 (70)
230 3u1l_A PRE-mRNA-splicing facto 89.9 0.043 1.5E-06 45.2 -0.9 30 141-170 72-101 (240)
231 2e5s_A Otthump00000018578; ZF- 89.8 0.031 1.1E-06 39.9 -1.6 25 139-163 20-45 (98)
232 1whv_A Poly(A)-specific ribonu 88.7 1.9 6.4E-05 30.8 7.1 62 21-118 9-70 (100)
233 2e5s_A Otthump00000018578; ZF- 86.9 0.12 4.1E-06 36.8 -0.1 35 135-173 52-86 (98)
234 3ctr_A Poly(A)-specific ribonu 80.9 1.3 4.4E-05 31.7 3.2 40 71-118 21-60 (101)
235 3pq1_A Poly(A) RNA polymerase; 80.1 0.83 2.8E-05 41.0 2.4 40 71-115 68-107 (464)
236 2fc6_A Nuclear, target of EGR1 80.0 0.51 1.7E-05 29.5 0.7 27 2-28 22-48 (50)
237 2l08_A Regulator of nonsense t 80.0 7.9 0.00027 27.3 7.1 39 95-133 51-94 (97)
238 3d2n_A Muscleblind-like protei 78.7 1.1 3.8E-05 30.7 2.2 23 2-25 11-34 (83)
239 3lpe_A Putative transcription 69.1 12 0.00042 25.6 5.8 33 83-119 40-72 (92)
240 2rpp_A Muscleblind-like protei 68.0 1.7 5.8E-05 30.2 1.1 24 2-26 19-43 (89)
241 3h7h_B Transcription elongatio 67.4 4.5 0.00015 28.9 3.2 35 82-120 40-74 (106)
242 3u9g_A Zinc finger CCCH-type a 63.9 2.8 9.6E-05 34.1 1.7 22 2-24 153-178 (229)
243 2dhx_A Poly (ADP-ribose) polym 59.5 19 0.00066 25.6 5.3 44 81-132 38-81 (104)
244 2exu_A Transcription initiatio 49.5 9 0.00031 30.4 2.4 46 83-136 139-184 (200)
245 3p8b_B Transcription antitermi 42.0 22 0.00074 26.3 3.5 34 83-120 33-66 (152)
246 2e7g_A Putative ribosome-bindi 33.8 1E+02 0.0035 22.2 6.0 35 80-117 43-78 (129)
247 2kzf_A RBFA, ribosome-binding 31.3 48 0.0016 23.1 3.6 57 59-118 13-71 (106)
248 1use_A VAsp, vasodilator-stimu 28.8 62 0.0021 19.5 3.2 20 57-76 5-24 (45)
249 2hiq_A Hypothetical protein YD 28.1 74 0.0025 22.9 4.2 87 58-151 23-112 (113)
250 1jsu_C P27, KIP1, CIP2; comple 27.6 27 0.00093 23.8 1.7 25 57-81 15-39 (84)
251 4bby_A Alkyldihydroxyacetoneph 26.9 76 0.0026 29.1 5.1 42 77-118 368-409 (658)
252 3d45_A Poly(A)-specific ribonu 26.9 70 0.0024 28.5 4.7 42 70-119 454-495 (507)
253 2dyj_A Ribosome-binding factor 25.5 69 0.0024 21.9 3.5 57 59-119 10-67 (95)
254 2g0c_A ATP-dependent RNA helic 23.7 93 0.0032 19.7 3.8 43 82-132 32-74 (76)
255 1hy9_A Cocaine and amphetamine 22.8 27 0.00093 20.6 0.8 11 149-159 26-36 (41)
256 1gff_3 Bacteriophage G4 capsid 22.7 28 0.00095 18.2 0.7 12 177-188 2-13 (26)
257 1jos_A RBFA, ribosome-binding 22.5 1E+02 0.0034 22.2 4.1 34 82-118 36-72 (128)
No 1
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.93 E-value=2.5e-26 Score=168.66 Aligned_cols=103 Identities=81% Similarity=1.259 Sum_probs=87.8
Q ss_pred CCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHH-hhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 28 SQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVEC-EDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 28 S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~-e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
|+||+|+|||++|+.+....+| ....++++++++.|++|++||+++| + +||+|.+|.|+.+..++++|++||+|.+
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~--l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~~~~~G~~fV~f~~ 77 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADG--LRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLGDHLVGNVYVKFRR 77 (104)
T ss_dssp CCEEEEEEEEECCC------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSSSSSEEEEEEEESC
T ss_pred CcEEEEeeccCCccccccccCC--cccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCCCCccEEEEEEECC
Confidence 7999999999877765433233 1225678899999999999999999 7 9999999999988767889999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.++|.+|++.|||++|+||+|.|+|+|
T Consensus 78 ~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 78 EEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 999999999999999999999999986
No 2
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.92 E-value=2.9e-25 Score=166.07 Aligned_cols=100 Identities=28% Similarity=0.425 Sum_probs=88.0
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
..|..|++|+|+|||++.++. .+++|++|++||+++| ++||+|++|.|+++. ++|++||
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~-----------------d~~~~~el~edl~~~f-~kfG~V~~v~i~~~~---~~G~~fV 60 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEE-----------------EVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNS---AQGNVYV 60 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCC-----------------STTHHHHHHHHHHHHH-TTTTCCSEEEECTTC---TTCCEEE
T ss_pred CCCCCCcEEEEECCCChHHcc-----------------ChhHHHHHHHHHHHHH-hccCCEEEEEEecCC---CcEEEEE
Confidence 468899999999999986521 2347899999999999 799999999998763 5899999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhhhc
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCR 143 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~c~ 143 (189)
+|.+.++|.+|++.|||++|+||+|.|+|++++.|...-..
T Consensus 61 ~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 61 KCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPD 101 (114)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGG
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCcc
Confidence 99999999999999999999999999999999999865443
No 3
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.92 E-value=4.7e-25 Score=162.18 Aligned_cols=97 Identities=24% Similarity=0.445 Sum_probs=85.6
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC---CCeeeEEEE
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG---DHLVGNVYI 102 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~---~~~~G~vfV 102 (189)
++|++|+|+||+++.++. + +.+|+++++||+++| ++||+|++|.|+.+.. ++++|+|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~--------------~---d~~~~~~~~dl~~~f-~k~G~V~~v~i~~~~~~~~~~~~G~~fV 64 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELL--------------D---DEEYEEIVEDVRDEC-SKYGLVKSIEIPRPVDGVEVPGCGKIFV 64 (105)
T ss_dssp SCCSEEEEESSCCGGGSS--------------S---HHHHHHHHHHHHHHH-HTTSCEEEEECCCCBTTBCCTTTTEEEE
T ss_pred CCCeEEEEECCCCHHHcc--------------C---hHHHHHHHHHHHHHH-HccCCEEEEEEeccCCCCCcCCcEEEEE
Confidence 468999999999976532 1 246899999999999 7999999999998753 257899999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
+|++.++|.+|++.|||++|+||+|.|+|+++..|..+
T Consensus 65 ~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 65 EFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 102 (105)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHTT
T ss_pred EECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhhc
Confidence 99999999999999999999999999999999998764
No 4
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.90 E-value=2e-24 Score=162.37 Aligned_cols=93 Identities=25% Similarity=0.482 Sum_probs=81.3
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-----CCCeeeE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-----GDHLVGN 99 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-----~~~~~G~ 99 (189)
+.+|+||+|.||+++.++ .+++++||+++| ++||+|.+|.|+.+. +++++|+
T Consensus 17 ~~ps~vl~L~Nm~~~~el----------------------~ddleedl~eef-~k~G~V~~v~I~~~~~~~~~~~~~~G~ 73 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDI----------------------DDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVK 73 (118)
T ss_dssp HHSCCEEEEESCSCGGGC----------------------CTTHHHHHHHHH-TTTSCEEEEEEEEEEESSSTTCEEEEE
T ss_pred CCCCCEEEEECCCCHHHH----------------------HHHHHHHHHHHH-hccCCEeEEEEeecCCCcccCCcceEE
Confidence 457999999999986432 235778999999 799999999999763 2467899
Q ss_pred EEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 100 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 100 vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
|||+|.+.++|.+|++.|||++|+||+|.|+|+++++|...
T Consensus 74 ~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 74 IFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHTT
T ss_pred EEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcccc
Confidence 99999999999999999999999999999999999998754
No 5
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.89 E-value=2.2e-23 Score=153.29 Aligned_cols=96 Identities=29% Similarity=0.412 Sum_probs=82.3
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC--CCCeeeEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL--GDHLVGNV 100 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~--~~~~~G~v 100 (189)
+.|++|+||+|+||+++.++ .+++++||+++| ++||+|.+|.|+.+. +++++|++
T Consensus 3 i~~~~s~~l~l~Nm~~~~~l----------------------~dd~~~dl~~~f-~~~G~V~~v~i~~~~~~~~~~~G~~ 59 (105)
T 2pe8_A 3 MGKCPTKVVLLRNMVGAGEV----------------------DEDLEVETKEEC-EKYGKVGKCVIFEIPGAPDDEAVRI 59 (105)
T ss_dssp GGGSCCSEEEEESSSCSCCC-------------------------CHHHHHHHG-GGGSCEEEEEEEECSSCCTTTSEEE
T ss_pred CCCCCCCEEEEEcCCChHHh----------------------hHHHHHHHHHHH-HhcCCEEEEEEecCCCCCCCCcEEE
Confidence 35778999999999976432 134678999999 799999999999864 35789999
Q ss_pred EEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy12245 101 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 141 (189)
Q Consensus 101 fV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~ 141 (189)
||+|.+.++|.+|++.|||++|+||+|.|.|++...|..+.
T Consensus 60 FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~~~~ 100 (105)
T 2pe8_A 60 FLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLD 100 (105)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHHTTC
T ss_pred EEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhhhhh
Confidence 99999999999999999999999999999999998887654
No 6
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.9e-22 Score=147.03 Aligned_cols=103 Identities=26% Similarity=0.494 Sum_probs=88.9
Q ss_pred CCCCCCCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCC
Q psy12245 16 DRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDH 95 (189)
Q Consensus 16 ~~C~~~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~ 95 (189)
.-|++.|.+|+.|+||+|+|||++.++. +.+++|+++++||++.| ++||+|.+|.|... +
T Consensus 3 ~g~~~~~~~~~~s~~l~l~Nl~~~~~~~----------------~~~~~~~~~e~~l~~~f-~~~G~v~~v~i~~~---~ 62 (112)
T 2dit_A 3 SGSSGGPSRMRHERVVIIKNMFHPMDFE----------------DDPLVLNEIREDLRVEC-SKFGQIRKLLLFDR---H 62 (112)
T ss_dssp SSCCSCCCCCCSCCEEEEESSCCTTHHH----------------HCSHHHHHHHHHHHHHG-GGTSCCSEEEEETT---C
T ss_pred CcccCCCCCCCCceEEEEEcCCCHHHhc----------------cCHHHHHHHHHHHHHHH-HccCCEeEEEEecC---C
Confidence 4678999999999999999999875431 12347899999999999 79999999988543 3
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec-cCccch
Q psy12245 96 LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS-PVTDFR 138 (189)
Q Consensus 96 ~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~-~~~~f~ 138 (189)
++|++||+|.+.++|.+|++.|||++|+||+|.|.++ +..+|.
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSS
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcc
Confidence 6999999999999999999999999999999999998 445654
No 7
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.78 E-value=4.5e-19 Score=148.04 Aligned_cols=126 Identities=16% Similarity=0.263 Sum_probs=88.3
Q ss_pred CccccceecCcCCCCCCCCCCCCCCCCCeEEec---CCCCCc---cCCccCC--CCCcc----ccCCChHHHHHHH----
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHNKPTFSQTILLL---NLYINP---QNSAKSA--DGSHL----ISNVTDEEMQEHY---- 65 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~~P~~S~~v~l~---Nm~~~~---~~~~~~~--~~~~~----~~~~~~~e~~~~~---- 65 (189)
.|+||.| |+|++|+.|++.|..|+.+....+. ++.+.. ....... .+... ...+--.-|....
T Consensus 72 ~C~ffak-G~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~ 150 (240)
T 3u1l_A 72 FCLFFAK-GMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKH 150 (240)
T ss_dssp BCHHHHT-TCCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCC
T ss_pred EcCcccc-CCCCCCCCCCccCCCCCccchhhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhccc
Confidence 6999999 9999999999999999976654222 334321 1110000 00000 0000000011111
Q ss_pred ---HHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEe------------CCeeEEEE
Q psy12245 66 ---DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF------------GGRPVYAE 130 (189)
Q Consensus 66 ---~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f------------~GR~I~v~ 130 (189)
..++++|++.| ++||+|++|.|+.+ +|++||+|.+.++|+.|++.|||..+ +|+.|.|.
T Consensus 151 ~~~~~tEe~L~~~F-~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~ 224 (240)
T 3u1l_A 151 LKPAQIESRIRFVF-SRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVK 224 (240)
T ss_dssp CCHHHHHHHHHHHH-HTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEE
T ss_pred ccccCcHHHHHHHH-HccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEE
Confidence 33678999999 79999999999864 89999999999999999999999999 89999999
Q ss_pred eccC
Q psy12245 131 LSPV 134 (189)
Q Consensus 131 ~~~~ 134 (189)
|+..
T Consensus 225 wA~~ 228 (240)
T 3u1l_A 225 WANE 228 (240)
T ss_dssp ECC-
T ss_pred EccC
Confidence 9854
No 8
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.75 E-value=2.1e-18 Score=140.17 Aligned_cols=93 Identities=25% Similarity=0.479 Sum_probs=78.2
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC-----CCeeeE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-----DHLVGN 99 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~-----~~~~G~ 99 (189)
+..+.++.|.||++..++ .+++.+||+++| ++||+|.+|.|+.+.. ++++|+
T Consensus 121 ~~~s~v~~l~n~v~~~e~----------------------~~e~~~dl~~e~-~~~G~v~~~~v~~~~~~~~~~~~~~G~ 177 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDI----------------------DDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVK 177 (222)
T ss_dssp CCBCSEEEEESSCCGGGC----------------------CTTHHHHHHHHH-TTTSCEEEEEEEEEECCSSTTCCEEEE
T ss_pred ccccccchhhcCCCHHHH----------------------HHHHHHHHHHHH-HccCCeEEEEEecCCCCcccCcCceeE
Confidence 445677788888775432 124567999999 7999999999986543 389999
Q ss_pred EEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 100 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 100 vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
+||+|.+.++|.+|++.||||||+||+|.|+|+++++|+.+
T Consensus 178 ~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 178 IFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS 218 (222)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHTT
T ss_pred EEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhhc
Confidence 99999999999999999999999999999999999999764
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=107.26 Aligned_cols=84 Identities=21% Similarity=0.248 Sum_probs=71.4
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
|..+++|.+.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+
T Consensus 3 ~~p~~~lfV~nL~~~----------------~te~-----------~L~~~F-~~~G~i~~v~i~~d~~tg~~rG~aFV~ 54 (110)
T 3s8s_A 3 QIPLKEVTFARLNDN----------------VRET-----------FLKDMC-RKYGEVEEVEILLHPRTRKHLGLARVL 54 (110)
T ss_dssp CSCCCEEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCcEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCeeEEEEEECCCCCceeeEEEEE
Confidence 456789999998752 4444 566677 799999999999875 47899999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
|++.++|.+|++.|||..++||+|.|+++....
T Consensus 55 f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 55 FTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 999999999999999999999999999986543
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.57 E-value=3.1e-14 Score=102.66 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||++.| ++||+|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++||+|.|+++.
T Consensus 35 ~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 35 ELRSLF-SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp HHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHH-HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 566677 799999999999864 47889999999999999999999999999999999999973
No 11
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.56 E-value=3.2e-14 Score=104.84 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=66.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
|..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. +..+|++||+|
T Consensus 2 P~~~~~lfV~nLp~~----------------~te~-----------~L~~~F-~~~G~v~~v~i~~d~-~~~kg~afV~f 52 (115)
T 4f25_A 2 PLGSGNIFIKNLDKS----------------IDNK-----------ALYDTF-SAFGNILSCKVVCDE-NGSKGYGFVHF 52 (115)
T ss_dssp ---CCEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEEET-TEEEEEEEEEE
T ss_pred CCCCCEEEECCCCCC----------------CCHH-----------HHHHHH-hccCCEEEEEEeecC-CCCCceEEEEE
Confidence 667788999999652 4444 566677 799999999998764 34799999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++||+|.|.++..
T Consensus 53 ~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 53 ETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999999999999999999844
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-13 Score=98.79 Aligned_cols=84 Identities=15% Similarity=0.284 Sum_probs=71.5
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
..+..+++|.|.|+... ++++ ||++.| ++||+|.+|.|..+.++..+|++||
T Consensus 12 ~~~~~~~~l~v~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV 63 (100)
T 2do4_A 12 STSLEKHKLFISGLPFS----------------CTKE-----------ELEEIC-KAHGTVKDLRLVTNRAGKPKGLAYV 63 (100)
T ss_dssp SSCCCCSCEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEEEEECTTSCEEEEEEE
T ss_pred ccCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCeEEEEEEECCCCCEEeEEEE
Confidence 34456789999999753 3443 566677 7999999999998777788999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 64 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 64 EYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp EESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 99999999999999999999999999999843
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.4e-14 Score=98.36 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=71.0
Q ss_pred CCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEE
Q psy12245 22 HNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNV 100 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~v 100 (189)
...|..+++|+|.|+... ++++ ||++.| ++||+|.+|.|..+. ++..+|++
T Consensus 9 ~~~~~~~~~l~v~nlp~~----------------~t~~-----------~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~a 60 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLY----------------TTER-----------DLREVF-SKYGPIADVSIVYDQQSRRSRGFA 60 (95)
T ss_dssp CCSCCGGGCEEEESCCSS----------------CCHH-----------HHHHHH-HTTSCEEEEEEEECSSSSSEEEEE
T ss_pred CCCCCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCeeEEEEEEcCCCCCcccEE
Confidence 345667899999998753 3443 566677 699999999999764 36789999
Q ss_pred EEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 101 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 101 fV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||+|.+.++|.+|++.|||..++|++|.|+++.
T Consensus 61 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 61 FVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp EEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 999999999999999999999999999999874
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=4.2e-14 Score=97.72 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=68.5
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~ 103 (189)
+..+++|.+.|+... ++++ ||++.| ++||+|.+|.|+.+ .++..+|++||+
T Consensus 4 ~~~~~~l~V~nl~~~----------------~~~~-----------~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~ 55 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEE----------------VDDK-----------VLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVE 55 (85)
T ss_dssp CCCSSEEEEECCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEECCEETTTTEECSEEEEE
T ss_pred CCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-hccCCEEEEEEEECCCCCccccEEEEE
Confidence 457789999999652 3333 566777 79999999999876 456789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|.+.++|.+|++.|||..++|++|.|+++
T Consensus 56 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 56 FELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 99999999999999999999999999986
No 15
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.54 E-value=2.4e-14 Score=103.04 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+++|++.|+....+ +.++..+++|++.| ++||+|.+|.|+.+. ++.++|++||+|.
T Consensus 5 ~~~~vfV~nLp~v~~---------------------~~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~tg~~kG~afV~f~ 62 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPS---------------------AKVPVLKKALTSLF-SKAGKVVNMEFPIDEATGKTKGFLFVECG 62 (100)
T ss_dssp GGGEEEEESCCCCBG---------------------GGHHHHHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEES
T ss_pred cCcEEEEeCCCcCCh---------------------HHHHHHHHHHHHHH-HhcCCEeEEEEEEcCCCCccceEEEEEEC
Confidence 468999999975321 13456778999999 799999999999765 3789999999999
Q ss_pred CHHHHHHHHHHhCCCEeCC-eeEEEEec
Q psy12245 106 REEDAEKAVNDLNNRWFGG-RPVYAELS 132 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~G-R~I~v~~~ 132 (189)
+.++|.+|++.|||..++| |+|.|.++
T Consensus 63 ~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 63 SMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp SHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred CHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 9999999999999999999 99999998
No 16
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=5.5e-14 Score=99.17 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=69.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+++|.|.|+... ++++ ||++.| ++||+|.+|.|+.+..+..+|++||+|
T Consensus 13 ~~~~~~l~v~nlp~~----------------~~~~-----------~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f 64 (95)
T 2ywk_A 13 EEADRTVFVGNLEAR----------------VREE-----------ILYELF-LQAGPLTKVTICKDREGKPKSFGFVCF 64 (95)
T ss_dssp TTGGGEEEEECCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEECCCCCCceEEEEEE
Confidence 446789999999652 3333 567777 799999999999876678899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.+.++|.+|++.|||..++|++|.|.++.
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 65 KHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp SSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 99999999999999999999999999874
No 17
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=103.90 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=72.5
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+++|.+.|+....+ +.++.++++|++.| ++||+|.+|.|+ ..++.++|++||+|.+
T Consensus 14 ~~~~l~V~nLp~~~~---------------------~~~~~t~~~l~~~F-~~~G~v~~v~i~-~~~g~~~G~afV~f~~ 70 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGP---------------------DRLEKLKNVIHKIF-SKFGKITNDFYP-EEDGKTKGYIFLEYAS 70 (105)
T ss_dssp CCSEEEEESCCCCCT---------------------TTTTHHHHHHHHHH-GGGSCEEEEECC-CBTTBSCCEEEEEECS
T ss_pred CCCEEEEeCCCcchh---------------------hhhHHHHHHHHHHH-hcCCCEEEEEee-CCCCCeeeEEEEEECC
Confidence 467999999875311 12344667899999 799999999998 3456789999999999
Q ss_pred HHHHHHHHHHhCCCEeCCe-eEEEEec-cCccc
Q psy12245 107 EEDAEKAVNDLNNRWFGGR-PVYAELS-PVTDF 137 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR-~I~v~~~-~~~~f 137 (189)
.++|.+|++.|||..++|+ +|.|.++ +..+|
T Consensus 71 ~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 71 PAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKY 103 (105)
T ss_dssp SSHHHHHHHHCSSEECSTTCEEEEECSCCCCCC
T ss_pred HHHHHHHHHHhCCcccCCCceEEEEEcchHhhh
Confidence 9999999999999999999 9999998 44444
No 18
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.53 E-value=1.2e-13 Score=99.59 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=68.7
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+.++..+|++||+|.
T Consensus 27 ~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~ 78 (107)
T 3ulh_A 27 ETGGKLLVSNLDFG----------------VSDA-----------DIQELF-AEFGTLKKAAVHYDRSGRSLGTADVHFE 78 (107)
T ss_dssp CCSEEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEECCCCCcceEEEEEEC
Confidence 35679999998652 4443 566677 6999999999998777788999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.++|.+|++.|||..++|++|.|+++.
T Consensus 79 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 79 RKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 9999999999999999999999999874
No 19
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=100.63 Aligned_cols=79 Identities=11% Similarity=0.163 Sum_probs=65.7
Q ss_pred CCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCH
Q psy12245 28 SQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRRE 107 (189)
Q Consensus 28 S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~ 107 (189)
+++|.+.|+... ++ +.++..++||++.| ++||+|.+|.|++ .++.++|++||+|.+.
T Consensus 1 ~~~l~V~nLp~~----------------~~-----~~~~~t~~~l~~~F-~~~G~i~~v~i~~-~~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 1 DSVIVVDNVPQV----------------GP-----DRLEKLKNVIHKIF-SKFGKITNDFYPE-EDGKTKGYIFLEYASP 57 (81)
T ss_dssp CCEEEEESCCCC----------------CT-----TTHHHHHHHHHHHH-HTTCCEEEEECCC-BTTBCCCEEEEEESSH
T ss_pred CCEEEEeCCCCC----------------cH-----HHHHHHHHHHHHHH-hhcCCeEEEEecC-CCCcEeEEEEEEECCH
Confidence 578999998532 11 12455778999999 7999999999983 4567899999999999
Q ss_pred HHHHHHHHHhCCCEeCCe-eEEE
Q psy12245 108 EDAEKAVNDLNNRWFGGR-PVYA 129 (189)
Q Consensus 108 e~A~~A~~~LnGr~f~GR-~I~v 129 (189)
++|.+|++.|||..++|| +|.|
T Consensus 58 ~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 58 AHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHhcCcccCCceeEEe
Confidence 999999999999999999 8875
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.7e-14 Score=98.14 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=70.2
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
|..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+
T Consensus 2 ~~~~~~l~v~nlp~~----------------~t~~-----------~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~ 53 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFN----------------ITED-----------MLRGIF-EPFGKIDNIVLMKDSDTGRSKGYGFIT 53 (95)
T ss_dssp CSCCCEEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEEEECCSSSCCCCSEEEEE
T ss_pred CCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEeEEEEeecCCCCceeeEEEEE
Confidence 567899999998652 3443 566677 799999999999874 46789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 54 FSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp ESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 9999999999999999999999999999844
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=95.38 Aligned_cols=79 Identities=19% Similarity=0.419 Sum_probs=67.5
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+.+|.+.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+|.
T Consensus 5 ~~~~l~v~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 56 (87)
T 3bs9_A 5 SHFHVFVGDLSPE----------------ITTA-----------AIAAAF-APFGRISDARVVKDMATGKSKGYGFVSFF 56 (87)
T ss_dssp -CEEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CceEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEeEEEEEecCCCCccceEEEEEEC
Confidence 5678999998652 3343 567777 799999999999874 5788999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.++|.+|++.|||..++|+.|.|+++.
T Consensus 57 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 57 NKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 9999999999999999999999999974
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-13 Score=98.94 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=71.2
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
..+..+.+|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+ .+..+|++||
T Consensus 10 ~~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~-~g~~~g~afV 60 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDG----------------IDDE-----------RLRKAF-SPFGTITSAKVMME-GGRSKGFGFV 60 (103)
T ss_dssp CCCSSCCCEEEECCCTT----------------CCHH-----------HHHHTT-TTTSCEEEEEEEEC-SSSEEEEEEE
T ss_pred cCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEcC-CCCcCEEEEE
Confidence 34557889999999753 3443 566677 79999999999988 6788999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 61 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 61 CFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp EESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 99999999999999999999999999999844
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=102.32 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCC-CeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 28 SQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYG-EIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 28 S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG-~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
|++|.|+|+... +|++ ||++.| ++|| +|.+|.|+.+. ++..+|++||+|.
T Consensus 1 S~~i~v~nLp~~----------------~te~-----------~l~~~F-~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~ 52 (91)
T 2lxi_A 1 SNIVMLRMLPQA----------------ATED-----------DIRGQL-QSHGVQAREVRLMRNKSSGQSRGFAFVEFS 52 (91)
T ss_dssp CCEEEEETCCSS----------------CCHH-----------HHHHHH-HHHTCCCSBCCSSSCSSSCCCSSEEEEECS
T ss_pred CCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCEeEEEEEEecCCCCCcCceEEEEec
Confidence 689999999763 4444 566777 6999 89999998764 4688999999999
Q ss_pred CHHHHHHHHHHh-CCCEeCCeeEEEEecc
Q psy12245 106 REEDAEKAVNDL-NNRWFGGRPVYAELSP 133 (189)
Q Consensus 106 ~~e~A~~A~~~L-nGr~f~GR~I~v~~~~ 133 (189)
+.++|.+|++.| ||..++||+|.|+|+.
T Consensus 53 ~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 53 HLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp SHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 999999999988 4567999999999984
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.51 E-value=2.3e-13 Score=93.55 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=57.0
Q ss_pred HHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||+|.++.|+.+ .++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 17 ~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 17 TLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp HHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHH-HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 566777 79999999999977 4578899999999999999999999999999999999999843
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.4e-14 Score=97.79 Aligned_cols=82 Identities=21% Similarity=0.382 Sum_probs=69.3
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVY 101 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vf 101 (189)
..|..+++|+|.|+... ++++ ||++.| ++||+|.+|.|+.+. ++..+|++|
T Consensus 11 ~~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~af 62 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFS----------------LTNN-----------DLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAF 62 (94)
T ss_dssp SCCCCTTSEEEESCCTT----------------SCHH-----------HHHHHT-TTTSCEEEEEECCCSSSCCCTTCEE
T ss_pred CCCCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEeCCCCCCcccEEE
Confidence 34556789999999642 3433 567778 799999999998764 367899999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|+|.+.++|.+|++.|||..++|++|.|+|+
T Consensus 63 V~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 63 ILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp EEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 9999999999999999999999999999986
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=98.45 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=70.2
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+
T Consensus 5 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~ 56 (99)
T 1whw_A 5 SSGSGRLFVRNLSYT----------------SSEE-----------DLEKLF-SAYGPLSELHYPIDSLTKKPKGFAFVT 56 (99)
T ss_dssp CCSCEEEEEECCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCCCTTTCCCCSEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEeEEEEEecCCCCCcCeEEEEE
Confidence 456789999999753 3443 566777 799999999998875 57789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 57 FMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp ESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 9999999999999999999999999999854
No 27
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-13 Score=98.37 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=71.2
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
.....+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+.++..+|++||
T Consensus 10 ~~~~~~~~l~V~nlp~~----------------~~~~-----------~l~~~f-~~~G~i~~~~i~~~~~g~~~g~afV 61 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYK----------------VGWK-----------KLKEVF-SMAGVVVRADILEDKDGKSRGIGTV 61 (114)
T ss_dssp CCCCCCSCEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEEEEECTTCSEEEEEEE
T ss_pred ccCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEECCCCCeeeEEEE
Confidence 33446789999999752 3443 566677 7999999999998777788999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|+.|.|+++..
T Consensus 62 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 62 TFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 99999999999999999999999999999843
No 28
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-13 Score=97.63 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=70.5
Q ss_pred CCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeE--------EEEeeCC-
Q psy12245 22 HNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEE--------MNVCDNL- 92 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~--------v~i~~~~- 92 (189)
+..|....+|+|.|+-.. ++++ ||++.| ++||.|.. +.|..+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~ 58 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGEN----------------VTIE-----------SVADYF-KQIGIIKTNKKTGQPMINLYTDRE 58 (99)
T ss_dssp CCSCCCCSEEEEECCCSS----------------CCHH-----------HHHHHH-TTTSCBCEETTTTEESEEEEECTT
T ss_pred CCCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCEeeccccccccEEEEecCC
Confidence 445667789999999652 3443 566677 79999999 9998874
Q ss_pred CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 93 GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 93 ~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
++..+|++||+|.+.++|.+|++.|||..++|+.|.|+++
T Consensus 59 ~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 59 TGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp TCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 5788999999999999999999999999999999999986
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-13 Score=97.83 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYI 102 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV 102 (189)
.+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||
T Consensus 11 ~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV 62 (103)
T 2cq0_A 11 RADDNATIRVTNLSED----------------TRET-----------DLQELF-RPFGSISRIYLAKDKTTGQSKGFAFI 62 (103)
T ss_dssp CCSSSEEEEEESCCTT----------------CCHH-----------HHHTTS-TTTCCEEEEEEEECSSSCSEEEEEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCeEEEEEeecCCCCceeeEEEE
Confidence 4556789999998752 3444 566677 799999999999874 5788999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..|+|+.|.|.++..
T Consensus 63 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 63 SFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp EESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 99999999999999999999999999999854
No 30
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.51 E-value=1.7e-13 Score=97.27 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=68.7
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
++++|.|.|+-.. ++++ ||++.| ++||.|.+|.|..+. ++..+|++||+|.
T Consensus 1 P~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 52 (96)
T 2x1f_A 1 PSRVVYLGSIPYD----------------QTEE-----------QILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFR 52 (96)
T ss_dssp CCSEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCBCTTTCCBCSEEEEEES
T ss_pred CCcEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEeCCCCCccceEEEEEEC
Confidence 4688999998642 3433 566777 799999999999774 4678999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
+.++|.+|++.|||..++|+.|.|.++...
T Consensus 53 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 53 DLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 999999999999999999999999998543
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=2.7e-13 Score=97.39 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.+..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+.++..+|++||+
T Consensus 11 ~~~~~~~l~v~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~ 62 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQ----------------QSEE-----------DVLRLF-QPFGVIDECTVLRGPDGSSKGCAFVK 62 (105)
T ss_dssp SCCCCCEEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEEEEECSSSCEEEEEEEE
T ss_pred cCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEECCCCCcCcEEEEE
Confidence 3456789999999652 3443 566677 79999999999988777889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCC---eeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGG---RPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~G---R~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..+.| ++|.|.++..
T Consensus 63 f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 63 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp ESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred eCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 999999999999999999998 9999999854
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.2e-14 Score=98.20 Aligned_cols=82 Identities=16% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEE-EEeeC-CCCCeeeEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEM-NVCDN-LGDHLVGNVYI 102 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v-~i~~~-~~~~~~G~vfV 102 (189)
+..+++|+|.|+... ++++ ||++.| ++||+|.++ .|+.+ .++..+|++||
T Consensus 2 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~~~~i~~~~~~g~~~g~afV 53 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPE----------------IDEK-----------LLYDTF-SAFGVILQTPKIMRDPDTGNSKGYAFI 53 (96)
T ss_dssp CSCCCEEEEECCCTT----------------CCHH-----------HHHHHH-HTTSCBSSCCEECCCTTTCSCCSEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeeEEEEEEEcCCCCCcCeEEEE
Confidence 456789999998753 3433 566777 799999999 99877 45778999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 54 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 54 NFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp EBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 99999999999999999999999999999844
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.1e-13 Score=96.28 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=69.8
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
..+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+... .+|++||
T Consensus 10 ~~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~f-~~~G~v~~v~i~~~~~~-~~g~afV 60 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFR----------------FRDP-----------DLRQMF-GQFGKILDVEIIFNERG-SKGFGFV 60 (103)
T ss_dssp CCSCCCCEEEEESCCTT----------------CCHH-----------HHHHHG-GGTSCEEEEEEECCTTT-TCCEEEE
T ss_pred CCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCC-CcEEEEE
Confidence 44557799999999652 3443 566677 79999999999987543 7999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 61 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 61 TFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp EESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 99999999999999999999999999999844
No 34
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8e-14 Score=102.55 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=67.3
Q ss_pred CCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEE
Q psy12245 21 IHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNV 100 (189)
Q Consensus 21 ~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~v 100 (189)
-|-.|..+.+|.|.|+... ++++ ||++.| ++||+|.+|.|..+ +|++
T Consensus 9 ~~~~~~~~~~LfV~nLp~~----------------vte~-----------dL~~lF-~~fG~V~~v~i~~~-----kGfa 55 (105)
T 1sjq_A 9 HHGSGVPSRVIHIRKLPID----------------VTEG-----------EVISLG-LPFGKVTNLLMLKG-----KNQA 55 (105)
T ss_dssp ---CCCCCCEEEECSCCTT----------------SCHH-----------HHHHHH-HHHCCEEEEEEETT-----TTEE
T ss_pred ccCCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEcC-----CCEE
Confidence 4667889999999999763 4444 566677 79999999999975 7999
Q ss_pred EEEecCHHHHHHHHHHhC--CCEeCCeeEEEEeccC
Q psy12245 101 YIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPV 134 (189)
Q Consensus 101 fV~F~~~e~A~~A~~~Ln--Gr~f~GR~I~v~~~~~ 134 (189)
||+|++.++|.+|++.|+ |..++||+|.|+++..
T Consensus 56 FVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 56 FIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp EEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred EEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 999999999999999886 4799999999999854
No 35
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-13 Score=98.72 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=63.1
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+.+|+|.|+-.. ++++ ||++.| ++||+|..|.|+.+ |++||+|.+
T Consensus 14 ~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~~~i~~~------g~afV~f~~ 59 (108)
T 1x4c_A 14 SENRVVVSGLPPS----------------GSWQ-----------DLKDHM-REAGDVCYADVYRD------GTGVVEFVR 59 (108)
T ss_dssp CCCEEEEESCCSS----------------CCHH-----------HHHHHH-GGGSCEEEEEEETT------TEEEEEESS
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEeEEEEecC------CEEEEEECC
Confidence 5679999998753 3443 566677 79999999999875 999999999
Q ss_pred HHHHHHHHHHhCCCEeCC-----eeEEEEecc
Q psy12245 107 EEDAEKAVNDLNNRWFGG-----RPVYAELSP 133 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~G-----R~I~v~~~~ 133 (189)
.++|++|++.|||..++| ++|.|+++.
T Consensus 60 ~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 60 KEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp HHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred HHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 999999999999999999 999999973
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-13 Score=100.64 Aligned_cols=84 Identities=18% Similarity=0.274 Sum_probs=71.7
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+.+|.|.|+-.. ++++ ||++.| ++||.|.+|.|..+.++..+|++||+|
T Consensus 4 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~F 55 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRE----------------TNEK-----------MLKAVF-GKHGPISEVLLIKDRTSKSRGFAFITF 55 (116)
T ss_dssp TCSCCEEEEECCTTT----------------CCHH-----------HHHHHH-HTSSCCSEEEEECSTTTTCCCEEEEEC
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEECCCCCcccEEEEEE
Confidence 456789999998753 3443 566677 799999999999877778899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
.+.++|.+|++.|||..++|++|.|+++....
T Consensus 56 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 56 ENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp SSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999985543
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.49 E-value=4.6e-13 Score=97.83 Aligned_cols=83 Identities=20% Similarity=0.429 Sum_probs=70.6
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYI 102 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV 102 (189)
.+..+.+|+|.|+-.. ++++ ||++.| ++||.|.+|.|..+. ++..+|++||
T Consensus 11 ~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV 62 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPE----------------ITTE-----------DIKAAF-APFGRISDARVVKDMATGKSKGYGFV 62 (115)
T ss_dssp CSTTCEEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEE
Confidence 3456789999998652 3443 567777 799999999999874 5788999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 63 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 63 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp EESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 99999999999999999999999999999844
No 38
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=100.00 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=64.8
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
.+|++|.++|+... +|++ ||++.| ++||+|.+|.+.+. +|++||+|+
T Consensus 19 ~ps~~l~V~NLp~~----------------~te~-----------~L~~lF-~~fG~V~~v~i~~~-----kg~AFVef~ 65 (100)
T 3r27_A 19 PASPVVHIRGLIDG----------------VVEA-----------DLVEAL-QEFGPISYVVVMPK-----KRQALVEFE 65 (100)
T ss_dssp CCCSEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEETT-----TTEEEEEES
T ss_pred CCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-hccCCEEEEEEEcC-----CCEEEEEEC
Confidence 46899999999763 3444 566677 79999999999864 799999999
Q ss_pred CHHHHHHHHHHhCCCE--eCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRW--FGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~--f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||.. +.||+|.|+|+..
T Consensus 66 ~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 66 DVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp SHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 9999999999999985 7899999999854
No 39
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=103.96 Aligned_cols=82 Identities=26% Similarity=0.357 Sum_probs=68.5
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+.+|+|.|+-.. ++++ ++.+.|.+.| ++||+|.+|.+... +..+|++||+|.+
T Consensus 28 p~~~LfV~nL~~~----------------~~e~-------~L~~~L~~~F-~~~G~I~~v~i~~~--~~~rG~aFV~F~~ 81 (127)
T 2a3j_A 28 PSQVVLITNINPE----------------VPKE-------KLQALLYALA-SSQGDILDIVVDLS--DDNSGKAYIVFAT 81 (127)
T ss_dssp CCSEEEEESCCTT----------------SCHH-------HHHHHHHHHH-HHHSCEEEEEECCC--CSSCCCEEEEESS
T ss_pred CCCEEEEeCCCCC----------------CCHH-------HHHHHHHHHh-ccCCCeEEEEeccC--CCcCCEEEEEECC
Confidence 4678999998752 3443 3445778889 79999999998753 4679999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.++|.+|++.|||..+.|++|.|.|+..
T Consensus 82 ~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 82 QESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp HHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred HHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 9999999999999999999999999854
No 40
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=97.70 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=76.1
Q ss_pred cCcCCCCCCCCCCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q psy12245 10 GACRHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVC 89 (189)
Q Consensus 10 g~Cr~g~~C~~~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~ 89 (189)
|.|+.+......+..+..+.+|.|.|+... ++++ ||++.| ++||.|. +.+.
T Consensus 1 Gs~~~~~~~~~~~~~~~~~~~l~V~nL~~~----------------~t~~-----------~l~~~F-~~~G~v~-~~~~ 51 (97)
T 2e5j_A 1 GSSGSSGPGSPPGEGAPLAADVYVGNLPRD----------------ARVS-----------DLKRAL-RELGSVP-LRLT 51 (97)
T ss_dssp CCCCCCCCCCCCCSSSCCCCEEEEECCCTT----------------CCHH-----------HHHHHH-HHTTCCC-SEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEeCCCCc----------------CcHH-----------HHHHHH-HhcCCEE-EEEE
Confidence 567777777777888888999999999652 3443 566677 6999997 5555
Q ss_pred eCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 90 DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 90 ~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.. ..+|++||+|.+.++|.+|++.|||..++|+.|.|+++..
T Consensus 52 ~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 52 WQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp EE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred cC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 43 4689999999999999999999999999999999999843
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=98.50 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=69.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|.|.|+-.. ++++ ||++.| ++||+|++|.|+.+. ++..+|++||+
T Consensus 9 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~ 60 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEE----------------VDDK-----------VLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVE 60 (102)
T ss_dssp CCCCSCEEEESCCSS----------------CCHH-----------HHHHHH-TTTSCCCCEECCCCSSSCCCSSEEEEC
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHh-hccCCEEEEEEEecCCCCCcceEEEEE
Confidence 456789999999652 3433 566777 799999999998763 46789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 61 FELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 9999999999999999999999999999854
No 42
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-13 Score=99.29 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=69.8
Q ss_pred CCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC----CCee
Q psy12245 22 HNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG----DHLV 97 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~----~~~~ 97 (189)
..+...+.+|.+.|+... ++++++.+ +++.| ++||+|.+|.|+.+.. ...+
T Consensus 9 ~~r~~~~~~l~V~nLp~~----------------~~~~~l~~--------~~~~F-~~~G~i~~v~i~~~~~~~~~~~~~ 63 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQR----------------LADPEVLK--------RPEYF-GKFGKIHKVVINNSTSYAGSQGPS 63 (111)
T ss_dssp CCCCCCSSCEEEEEECTT----------------TCCHHHHH--------STTTT-TTTSCEEEEEEECCSSCCSSSCCC
T ss_pred cccccCCCEEEEECCCCC----------------CCHHHHHH--------HHHHh-hccCCEEEEEEecCCCcCccCCCC
Confidence 455667789999998763 34443320 11677 7999999999987642 2567
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 98 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 98 G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|++||+|.+.++|++|++.|||..++||+|.|+++..
T Consensus 64 G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 64 ASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred eEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence 9999999999999999999999999999999999844
No 43
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.4e-13 Score=97.64 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=70.5
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYI 102 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV 102 (189)
.+..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||
T Consensus 11 ~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV 62 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEK----------------VSEP-----------LLWELF-LQAGPVVNTHMPKDRVTGQHQGYGFV 62 (105)
T ss_dssp CCCTTTEEEEECCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCBCSSSCSBCSCEEE
T ss_pred cCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCCCcCCcEEEE
Confidence 3456789999999652 3443 566777 699999999999875 5788999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 63 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 63 EFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp EESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred EECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 99999999999999999999999999999843
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=3.2e-13 Score=97.22 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=70.5
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC--CCCeeeEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL--GDHLVGNV 100 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~--~~~~~G~v 100 (189)
..+..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. .+..+|++
T Consensus 10 ~~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~~g~a 61 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQ----------------ANQR-----------EIRELF-STFGELKTVRLPKKMTGTGAHRGFG 61 (107)
T ss_dssp CCSSCCCCEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCCCCSSSCSSCSEE
T ss_pred ccCCCCCEEEEeCCCCc----------------CCHH-----------HHHHHH-HccCCeEEEEEecCCCCCCCcCceE
Confidence 34456789999998753 3443 566777 799999999998772 56789999
Q ss_pred EEEecCHHHHHHHHHHh-CCCEeCCeeEEEEeccC
Q psy12245 101 YIKFRREEDAEKAVNDL-NNRWFGGRPVYAELSPV 134 (189)
Q Consensus 101 fV~F~~~e~A~~A~~~L-nGr~f~GR~I~v~~~~~ 134 (189)
||+|.+.++|.+|++.| ||..++|++|.|.++..
T Consensus 62 fV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 62 FVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp EEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred EEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 99999999999999999 99999999999999854
No 45
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.48 E-value=4.7e-13 Score=97.88 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=69.0
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEe
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKF 104 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F 104 (189)
..+.+|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+|
T Consensus 23 ~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f 74 (115)
T 2cpz_A 23 PEGANLFIYHLPQE----------------FGDQ-----------DLLQMF-MPFGNVVSAKVFIDKQTNLSKCFGFVSY 74 (115)
T ss_dssp STTCCEEEESCCSS----------------CCHH-----------HHHHHH-GGGSCCSEEEEEECSSSCSEEEEEEEEC
T ss_pred CCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEECCCCCCcCccEEEEE
Confidence 35678999998752 3443 567777 799999999999875 578899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++|++|.|+++..
T Consensus 75 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 75 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 999999999999999999999999999843
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.9e-13 Score=95.71 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=67.5
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
...+|.+.|+-.. ++++++. +.|++.| ++||+|.+|.|+.+... +|++||+|.+
T Consensus 8 ~~~~l~V~nL~~~----------------~~~~~l~-------~~l~~~F-~~~G~v~~v~i~~~~~~--rg~afV~f~~ 61 (96)
T 2dgx_A 8 NGADVQVSNIDYR----------------LSRKELQ-------QLLQEAF-ARHGKVKSVELSPHTDY--QLKAVVQMEN 61 (96)
T ss_dssp SCEEEEEESCCTT----------------SCHHHHH-------HHHHHHH-HHHSCEEEEEECSCCST--TCCEEEEESS
T ss_pred CCCEEEEECCCCC----------------CCHHHHH-------HHHHHhc-cccCcEEEEEEEeCCCC--CeEEEEEECC
Confidence 4568999998753 4444333 3455788 69999999999977543 8999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.++|.+|++.|||..++||+|.|+++..
T Consensus 62 ~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 62 LQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp HHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 9999999999999999999999999843
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.8e-13 Score=95.48 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=67.7
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC----CCeeeEEE
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG----DHLVGNVY 101 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~----~~~~G~vf 101 (189)
..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+.. +..+|++|
T Consensus 3 ~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~gt~~~~g~af 54 (98)
T 2cpf_A 3 SGSSGLFIKNLNFS----------------TTEE-----------TLKGVF-SKVGAIKSCTISKKKNKAGVLLSMGFGF 54 (98)
T ss_dssp CCCCCEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEEEEEEECTTCCEEEEEEEE
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCCCCCcCcccEEE
Confidence 35689999998752 3443 566677 6999999999986532 26799999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 55 V~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 55 VEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp EEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred EEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 999999999999999999999999999999844
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.9e-13 Score=94.75 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.+..+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+... .+|++||+
T Consensus 11 ~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~-~~g~afV~ 61 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRD----------------VTEV-----------LILQLF-SQIGPCKSCKMITEHTS-NDPYCFVE 61 (103)
T ss_dssp CSCCCCEEEEESCCTT----------------CCHH-----------HHHHHH-HHHSCEEEEEEECCCCS-SCCEEEEE
T ss_pred CCCCCCEEEEeCCCcc----------------CCHH-----------HHHHHH-HhcCCEeEEEEEecCCC-CCCEEEEE
Confidence 3456789999998752 3443 566677 79999999999987533 58999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..+.|++|.|.++..
T Consensus 62 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 62 FYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred ECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 9999999999999999999999999999844
No 49
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.1e-13 Score=99.17 Aligned_cols=82 Identities=12% Similarity=0.209 Sum_probs=69.6
Q ss_pred CCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEE
Q psy12245 22 HNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vf 101 (189)
+.....+++|.+.|+... +|++ ||++.| ++||+|.+|.|+.+..+..+|++|
T Consensus 5 ~~~~~~~~~lfV~~Lp~~----------------~te~-----------~L~~~F-~~~G~v~~v~i~~d~~g~~rG~aF 56 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTD----------------ATLD-----------DIKEWL-EDKGQVLNIQMRRTLHKAFKGSIF 56 (103)
T ss_dssp CSSCSGGGCEEEECCCTT----------------CCHH-----------HHHHHH-HTSSCEEEEEEECCCTTSCCCEEE
T ss_pred ccccCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-hhcCCEEEEEEEECCCCCCccEEE
Confidence 444556789999998763 3443 566677 799999999999876678899999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|+|.+.++|.+|+. |||..|+|++|.|.+.
T Consensus 57 V~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 57 VVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp EEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred EEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 99999999999999 9999999999999986
No 50
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.2e-13 Score=96.54 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=70.4
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVY 101 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vf 101 (189)
..+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++|
T Consensus 7 ~~~~~~~~l~v~nLp~~----------------~t~~-----------~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~af 58 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFD----------------TNEQ-----------SLEQVF-SKYGQISEVVVVKDRETQRSRGFGF 58 (102)
T ss_dssp CCCCCCSEEEEESCCTT----------------CCHH-----------HHHHHH-HHHSCCCEEEECCCSSSCSCCSEEE
T ss_pred CCCCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEeCCCCCCcccEEE
Confidence 34557789999999652 3443 566677 699999999998764 467899999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|+|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 59 V~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 59 VTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp EECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred EEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 999999999999999999999999999999843
No 51
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.4e-13 Score=96.43 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+|.
T Consensus 22 ~~~~l~V~nlp~~----------------~t~~-----------~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 73 (106)
T 1p27_B 22 EGWILFVTGVHEE----------------ATEE-----------DIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYE 73 (106)
T ss_dssp TBEEEEEECCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEES
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-hccCCeEEEEEEecCCCCceeeEEEEEEC
Confidence 4578999998753 3443 566677 799999999998774 4688999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.++|.+|++.|||..++|+.|.|.++.
T Consensus 74 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 74 TYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp CHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 9999999999999999999999999973
No 52
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=4.2e-13 Score=99.55 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=69.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+.++..+|++||+|
T Consensus 32 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~v~~v~i~~~~~g~~~g~afV~f 83 (124)
T 2kt5_A 32 VETGAKLLVSNLDFG----------------VSDA-----------DIQELF-AEFGTLKKAAVDYDRSGRSLGTADVHF 83 (124)
T ss_dssp CSSCEEEEEESCCSS----------------CCHH-----------HHHHHH-HTTSCCSEEEEECCSSSSCCSEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeeEEEEEECCCCCEeeEEEEEE
Confidence 446679999998642 3443 566677 799999999999876777899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++|+.|.|+++..
T Consensus 84 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 84 ERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 999999999999999999999999999854
No 53
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=3.6e-13 Score=96.54 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=69.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+
T Consensus 10 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~ 61 (103)
T 2dnm_A 10 VDGMITLKVDNLTYR----------------TSPD-----------SLRRVF-EKYGRVGDVYIPREPHTKAPRGFAFVR 61 (103)
T ss_dssp CSCCCEEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEECCBCSSSCSBCSCEEEE
T ss_pred CCCCeEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEeCCCCCCCCeEEEEE
Confidence 345789999999753 3443 566677 799999999998764 36789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 62 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 62 FHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp ESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 9999999999999999999999999999854
No 54
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.46 E-value=5.6e-13 Score=93.41 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=68.0
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..+.+|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+ ++..+|++||+|.
T Consensus 6 ~~~~~l~V~nlp~~----------------~t~~-----------~l~~~f-~~~G~v~~~~i~~~-~g~~~g~afV~f~ 56 (92)
T 2dgv_A 6 SGACQIFVRNLPFD----------------FTWK-----------MLKDKF-NECGHVLYADIKME-NGKSKGCGVVKFE 56 (92)
T ss_dssp SSCCEEEECSCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEEEEES-SSCEEEEEEEEES
T ss_pred CCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEcc-CCCcceEEEEEEC
Confidence 45689999999752 3333 566777 79999999999974 4578999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||..++|++|.|+++..
T Consensus 57 ~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 57 SPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 99999999999999999999999999843
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.7e-13 Score=97.25 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhc-CCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDK-YGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~k-fG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
+..+.+|.|.|+-.. ++++ ||++.| ++ ||.|.+|.|+.+.++..+|++||+
T Consensus 6 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~~G~v~~v~i~~~~~g~~~g~afV~ 57 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPD----------------VDDG-----------MLYEFF-VKVYPSCRGGKVVLDQTGVSKGYGFVK 57 (104)
T ss_dssp SSCCCCEEEECCCTT----------------CCHH-----------HHHHHH-HHHCTTEEEEEEEECTTCCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCCeEEEEEEECCCCCccceEEEE
Confidence 456789999998763 3443 566677 68 999999999987777889999999
Q ss_pred ecCHHHHHHHHHHhCCCE-eCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRW-FGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~-f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||.. ++|++|.|.++..
T Consensus 58 f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 58 FTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp ESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred ECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 999999999999999999 9999999999843
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.45 E-value=4.3e-13 Score=97.89 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=68.1
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+
T Consensus 23 ~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~ 74 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFN----------------ITED-----------MLRGIF-EPFGRIESIQLMMDSETGRSKGYGFIT 74 (108)
T ss_dssp CSSCEEEEEECCCSS----------------CCHH-----------HHHHHH-TTTSCEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEE
Confidence 335678999988642 3443 566777 799999999998763 56889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
|.+.++|.+|++.|||..++|++|.|+++.
T Consensus 75 F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 75 FSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp ESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 999999999999999999999999999984
No 57
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1e-12 Score=94.32 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeE
Q psy12245 21 IHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGN 99 (189)
Q Consensus 21 ~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~ 99 (189)
....+..+.+|.|.||... ++++ ||++.| ++|| |.+|.|+.+. ++..+|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~g-i~~v~i~~~~~~g~~~g~ 58 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFN----------------TVQG-----------DIDAIF-KDLS-IRSVRLVRDKDTDKFKGF 58 (103)
T ss_dssp CCCCSSSCEEEEEESCCTT----------------CCHH-----------HHHHHT-TTSC-EEEEEEEECSSSCSEEEE
T ss_pred CCCCCCCCeEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCC-ceEEEEeecCCCCccceE
Confidence 4555667899999999652 3443 566677 7997 9999999875 4788999
Q ss_pred EEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 100 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 100 vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+||+|.+.++|.+|+ .|||..++|++|.|.++..
T Consensus 59 afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 59 CYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp EEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred EEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 999999999999999 8999999999999999843
No 58
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=7.5e-13 Score=94.22 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=68.4
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+
T Consensus 7 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~ 58 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHN----------------CGET-----------ELREYF-KKFGVVTEVVMIYDAEKQRPRGFGFIT 58 (99)
T ss_dssp CSSCCEEEEESCCSS----------------CCHH-----------HHHHHH-SSSSCEEEEEECCCTTTCSCCSEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEeCCCCCCCCceEEEE
Confidence 456789999998652 4444 566677 799999999998764 46789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++ |||..++|++|.|.++..
T Consensus 59 f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 59 FEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp ESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred ECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence 999999999998 999999999999999843
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.6e-13 Score=95.63 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=67.4
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.+..+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ..+|++||+
T Consensus 18 ~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~v~~~~i~~~~--~~~g~afV~ 67 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPD----------------IRTK-----------DIEDVF-YKYGAIRDIDLKNRR--GGPPFAFVE 67 (109)
T ss_dssp CCCCSSEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEECCSS--SSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEECC--CCCcEEEEE
Confidence 3446789999999652 3443 566777 799999999997653 468999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 68 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 68 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 9999999999999999999999999999844
No 60
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=98.85 Aligned_cols=79 Identities=13% Similarity=0.273 Sum_probs=66.1
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCC--eeEEEEeeCC-CCCeeeEEEEE
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGE--IEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~--I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
.-.||+|+|+-.. +|++ +|++.| ++||. |.+|.|+++. ++.++|++||+
T Consensus 8 ~m~tlfV~nL~~~----------------~tee-----------~L~~~F-~~~G~i~v~~v~i~~d~~tg~srG~aFV~ 59 (95)
T 2lkz_A 8 HMDTIILRNIAPH----------------TVVD-----------SIMTAL-SPYASLAVNNIRLIKDKQTQQNRGFAFVQ 59 (95)
T ss_dssp CCCEEEEESCCTT----------------CCHH-----------HHHHHS-TTTCCCCGGGEECCCCSSSSSCSSEEEEE
T ss_pred ccCEEEEeCCCCc----------------CCHH-----------HHHHHH-HhhCCccEEEEEEEecCCCCCCceEeEEE
Confidence 3479999999763 4444 566777 79995 6799998874 47889999999
Q ss_pred ecCHHHHHHHHHHhCCC----EeCCeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNR----WFGGRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr----~f~GR~I~v~~~~ 133 (189)
|.+.++|.+|++.|||. .++||+|.|+|+.
T Consensus 60 f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 60 LSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp CSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred ECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 99999999999999997 5899999999973
No 61
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.44 E-value=3.2e-13 Score=96.55 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=54.0
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
+|++.| ++||+|.++++..+ +|++||+|.+.++|.+|++.|||..++||+|.|.++.+.+
T Consensus 23 ~L~~lF-~q~G~V~~~~l~~~-----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 23 TLRTLC-MQHGPLVSFHPYLN-----QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENE 82 (89)
T ss_dssp HHHHHH-HHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHH
T ss_pred HHHHHH-HhhCCEEEEEEcCC-----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHH
Confidence 567777 79999999999763 8999999999999999999999999999999999985433
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.44 E-value=3.3e-13 Score=101.73 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=69.4
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYI 102 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV 102 (189)
.|..+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||
T Consensus 42 ~~~~~~~l~V~nLp~~----------------~te~-----------~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV 93 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLY----------------TTER-----------DLREVF-SKYGPIADVSIVYDQQSRRSRGFAFV 93 (129)
T ss_dssp CCCCSSCBCEETCTTS----------------CCHH-----------HHHHHH-TTTSCEEEEEEECCSSSSCCCCEEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCCCccceEEEE
Confidence 4556788888887652 3443 566777 799999999999764 4678999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 94 ~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 94 YFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp EESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 99999999999999999999999999999844
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.4e-13 Score=95.20 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=69.6
Q ss_pred CCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC--CCeee
Q psy12245 21 IHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG--DHLVG 98 (189)
Q Consensus 21 ~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~--~~~~G 98 (189)
....+..+.+|.|.|+-.. ++++ ||++.| ++|| |.+|.|+.+.. +..+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g 58 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYD----------------VTEE-----------SIKEFF-RGLN-ISAVRLPREPSNPERLKG 58 (104)
T ss_dssp CCCCSSSCEEEEEESCCSS----------------CCHH-----------HHHHHT-TTSC-EEEEECCBCSSCTTSBCS
T ss_pred CCCCCCCCCEEEEeCCCCc----------------CCHH-----------HHHHHH-HHCC-ceEEEEecCCCCCCCcCe
Confidence 3444456789999999652 3443 566777 7999 99999997753 67899
Q ss_pred EEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 99 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 99 ~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
++||+|.+.++|.+|+ .|||..++|+.|.|.++..
T Consensus 59 ~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 59 FGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp CEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred EEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 9999999999999999 9999999999999999854
No 64
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5e-13 Score=97.45 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=68.5
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
..+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+.. ..+|++||
T Consensus 24 ~~~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~i~~v~i~~~~~-~~kg~afV 74 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFR----------------FRDP-----------DLRQMF-GQFGKILDVEIIFNER-GSKGFGFV 74 (109)
T ss_dssp SCTTCCCEEEEESCCTT----------------CCHH-----------HHHHHG-GGTCCCSCEEECCBTT-BCTTEEEE
T ss_pred cCCCCCCEEEEECCCCc----------------CCHH-----------HHHHHH-HhcCCEEEEEEEECCC-CCceEEEE
Confidence 34456788999888652 3443 566777 7999999999987643 47899999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 75 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 75 TFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp ECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 99999999999999999999999999999743
No 65
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.44 E-value=7.7e-13 Score=95.88 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+|.
T Consensus 25 ~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 76 (110)
T 1oo0_B 25 EGWILFVTSIHEE----------------AQED-----------EIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYE 76 (110)
T ss_dssp TBEEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEECCBCTTTSSBCSEEEEEES
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEEC
Confidence 4578999998752 3443 566777 799999999998764 5678999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.++|.+|+..|||..++|++|.|.++.
T Consensus 77 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 77 THKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 9999999999999999999999999973
No 66
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.8e-13 Score=98.94 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=65.8
Q ss_pred CCCCCCCeEEecCCCC-CccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEE
Q psy12245 23 NKPTFSQTILLLNLYI-NPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vf 101 (189)
..+..+++|.|.|+-. . ++++ ||++.| ++||+|.+|.|..+ +|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~----------------~te~-----------dL~~lF-~~fG~V~~v~i~~~-----kg~aF 56 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGK----------------NLRY-----------QLLQLV-EPFGVISNHLILNK-----INEAF 56 (102)
T ss_dssp CCCCCCCEEEEESCCCSS----------------SHHH-----------HHHTTT-GGGSCEEEEEECSS-----SSCEE
T ss_pred CCCCCCCEEEEeCCCCCc----------------CCHH-----------HHHHHH-HhcCCEEEEEEEcC-----CCEEE
Confidence 3455789999999986 3 2233 566777 79999999999865 69999
Q ss_pred EEecCHHHHHHHHHHhCCC--EeCCeeEEEEeccC
Q psy12245 102 IKFRREEDAEKAVNDLNNR--WFGGRPVYAELSPV 134 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr--~f~GR~I~v~~~~~ 134 (189)
|+|++.++|.+|++.|||. .++||+|.|+++..
T Consensus 57 Vef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 57 IEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp EEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred EEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 9999999999999999864 59999999999853
No 67
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=8.7e-13 Score=93.75 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=69.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCee-EEEEeeCC-CCCeeeEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIE-EMNVCDNL-GDHLVGNVYI 102 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~-~v~i~~~~-~~~~~G~vfV 102 (189)
+..+++|.|.|+-.. ++++ ||++.| ++||+|. +|.|+.+. ++..+|++||
T Consensus 6 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~~v~i~~~~~~g~~~g~afV 57 (99)
T 2div_A 6 SGMAASLWMGDLEPY----------------MDEN-----------FISRAF-ATMGETVMSVKIIRNRLTGIPAGYCFV 57 (99)
T ss_dssp CSSSSEEEECSCCTT----------------CCHH-----------HHHHHH-HHTTCCCCEEEEEECSSSCCEEEEEEE
T ss_pred CCCccEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCcceEEEEeecCCCCCcCCEEEE
Confidence 446789999999753 3443 566677 6999999 99999874 5688999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCee----EEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRP----VYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~----I~v~~~~~ 134 (189)
+|.+.++|++|++.|||..++|+. |.|+++..
T Consensus 58 ~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 58 EFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp ECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred EeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 999999999999999999999999 99999744
No 68
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-12 Score=93.04 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=66.7
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
..+..+++|.|.|+... ++++ ||++.| ++||+|++|.+..+ +|++||
T Consensus 12 ~~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~v~~v~~~~~-----~g~afV 58 (97)
T 1why_A 12 GKANPTTRLWVGGLGPN----------------TSLA-----------ALAREF-DRFGSIRTIDHVKG-----DSFAYI 58 (97)
T ss_dssp CCCCCCSCEEEECCCSS----------------CCHH-----------HHHHHH-HTTSCEEEEEECSS-----SCCEEE
T ss_pred CCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeeEEEEeCC-----CCEEEE
Confidence 34556789999998753 3443 566677 79999999999864 799999
Q ss_pred EecCHHHHHHHHHHhCCCEeC--CeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFG--GRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~--GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..++ |++|.|+++..
T Consensus 59 ~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 59 QYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp EESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred EECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 999999999999999999999 99999999843
No 69
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=6.2e-13 Score=99.75 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=66.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~ 103 (189)
+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+ .++..+|++||+
T Consensus 60 ~~~~~~l~v~nlp~~----------------~~~~-----------~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~ 111 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEE----------------VDDK-----------VLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVE 111 (140)
T ss_dssp CSSCCEEEEECCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEECCCCTTTCCCCSEEEEE
T ss_pred CCCCcEEEEEeCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEeecCCCCCcCcEEEEE
Confidence 345678888888652 3333 567777 79999999999876 356789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|.+.++|.+|++.|||..++|++|.|+++
T Consensus 112 f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 112 FELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp ESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 99999999999999999999999999874
No 70
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-12 Score=95.02 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=63.7
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+++|.|.|+-.. ++++ ||++.| ++||.|.+|.|..+ +|++||+|++
T Consensus 14 p~~~l~V~nLp~~----------------~te~-----------~L~~~F-~~fG~v~~v~i~~~-----kg~aFVef~~ 60 (101)
T 2cq1_A 14 PSRVLHIRKLPGE----------------VTET-----------EVIALG-LPFGKVTNILMLKG-----KNQAFLELAT 60 (101)
T ss_dssp CCSEEEEESCCTT----------------CCHH-----------HHHHTT-TTTSCEEEEEEETT-----TTEEEEEESS
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEECC-----CCEEEEEECC
Confidence 5789999999852 4444 566677 79999999999865 8999999999
Q ss_pred HHHHHHHHHHh--CCCEeCCeeEEEEeccC
Q psy12245 107 EEDAEKAVNDL--NNRWFGGRPVYAELSPV 134 (189)
Q Consensus 107 ~e~A~~A~~~L--nGr~f~GR~I~v~~~~~ 134 (189)
.++|.+|++.| +|..+.||+|.|.|+..
T Consensus 61 ~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 61 EEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp HHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred HHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 99999999977 57889999999999854
No 71
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=3.9e-13 Score=95.13 Aligned_cols=84 Identities=17% Similarity=0.319 Sum_probs=68.4
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+++|.|.|+... +++++ |.+.|.+.| ++||.|.+|.|... +..+|++||+|
T Consensus 5 ~~~~~~l~V~nLp~~----------------~~~~~-------l~~~l~~~f-~~~G~i~~v~i~~~--~~~~g~afV~f 58 (97)
T 1nu4_A 5 TRPNHTIYINNLNEK----------------IKKDE-------LKKSLHAIF-SRFGQILDILVSRS--LKMRGQAFVIF 58 (97)
T ss_dssp -CCCSEEEEESCCTT----------------SCHHH-------HHHHHHHHH-GGGSCEEEEECCHH--HHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHHH-------HHHHHHHHH-HhCCCEEEEEEEcC--CCcCcEEEEEe
Confidence 346789999998652 44443 344566888 79999999999842 35689999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++|++|.|+++..
T Consensus 59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 59 KEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 999999999999999999999999999844
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.43 E-value=8.4e-13 Score=91.50 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=65.8
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC-C-CeeeEEEEEe
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG-D-HLVGNVYIKF 104 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~-~-~~~G~vfV~F 104 (189)
.+.+|.|.|+-.. ++++ ||++.| ++||+|.++.|+.+.. + ..+|++||+|
T Consensus 3 ~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~~~i~~~~~~~~~~~g~afV~f 54 (88)
T 4a8x_A 3 KPTKVHIGRLTRN----------------VTKD-----------HIMEIF-STYGKIKMIDMPVERMHPHLSKGYAYVEF 54 (88)
T ss_dssp CCCEEEEECCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCEETTEEEEECSEEEEEE
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEEeCCCCCCCCCcEEEEEE
Confidence 3578999998642 3443 566777 7999999999987642 2 3789999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.+.++|.+|++.|||..++|+.|.|+++.
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 55 ENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 99999999999999999999999999984
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=9.4e-13 Score=95.30 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=69.5
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+
T Consensus 12 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~ 63 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFD----------------SEEE-----------ALGEVL-QQFGDLKYVRVVLHPDTEHSKGCAFAQ 63 (111)
T ss_dssp CCCCCCEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCBCSSSCCBCSEEEEE
T ss_pred CCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCCCCCccEEEEE
Confidence 446789999999763 3443 566677 699999999999764 46789999999
Q ss_pred ecCHHHHHHHHHHhC------CCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLN------NRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~Ln------Gr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|| |..++|+.|.|.++..
T Consensus 64 f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 64 FMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp ESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred ECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence 999999999999999 9999999999999843
No 74
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.43 E-value=6.3e-13 Score=97.10 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=68.4
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.|..+++|.|.|+-.. ++++ ||++.| ++||.|.+|.|+.+. ..+|++||+
T Consensus 4 ~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~v~~v~i~~~~--~~~g~afV~ 53 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYK----------------ITAE-----------EMYDIF-GKYGPIRQIRVGNTP--ETRGTAYVV 53 (115)
T ss_dssp CTTCCSEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEEEECST--TTTTCEEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEeeCC--CCCcEEEEE
Confidence 4667899999998642 3443 566777 799999999998753 458999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 54 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 54 YEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 9999999999999999999999999999843
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.43 E-value=9.5e-13 Score=91.55 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=66.2
Q ss_pred CCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecC
Q psy12245 28 SQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRR 106 (189)
Q Consensus 28 S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~ 106 (189)
+++|.+.|+-.. ++++ ||++.| ++||+|.++.|+.+. ++..+|++||+|.+
T Consensus 6 ~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 57 (89)
T 3ucg_A 6 ARSIYVGNVDYG----------------ATAE-----------ELEAHF-HGCGSVNRVTILCDKFSGHPKGFAYIEFSD 57 (89)
T ss_dssp HTEEEEESCCTT----------------CCHH-----------HHHHHH-GGGCCEEEEEEEESCSSSSCCEEEEEEESS
T ss_pred CCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 578999988652 3333 566777 799999999999874 56789999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.++|.+|+ .|||..++|++|.|.++..
T Consensus 58 ~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 58 KESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp THHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred HHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 99999999 9999999999999999743
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-12 Score=90.29 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=69.6
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
..+..+.+|.|.|+... ++++ ||++.| ++| .|.+|.|+.+.++..+|++||
T Consensus 5 ~~~~~~~~l~v~nLp~~----------------~t~~-----------~l~~~F-~~~-~i~~v~i~~~~~g~~~g~afV 55 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFN----------------VTEK-----------NVMEFL-APL-KPVAIRIVRNAHGNKTGYIFV 55 (91)
T ss_dssp CCCCCCCEEEEECCCSS----------------CCHH-----------HHHHHH-TTS-CCSEEEEEECTTSCEEEEEEE
T ss_pred CCCCCccEEEEECCCCC----------------CCHH-----------HHHHHH-hhC-CceEEEEEECCCCCCceEEEE
Confidence 34556789999999753 3443 566777 799 999999998866788999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++ |||..++||.|.|.++..
T Consensus 56 ~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 56 DFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp ECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred EECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 9999999999999 999999999999999854
No 77
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.43 E-value=6.7e-13 Score=97.38 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=55.3
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
||++.| ++||+|.+|.|..+. ++..+|++||+|.+.++|.+|++.|||..++|+.|.|+++
T Consensus 56 ~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 56 DLASTF-LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHHHT-TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred HHHHHH-HhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 567777 799999999998764 4678999999999999999999999999999999999985
No 78
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=99.24 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=66.8
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+.+|++.|+... ++++ ||++.| ++||+|.+|.|+.. +|++||+|.+
T Consensus 9 ~~~~l~V~nLp~~----------------~te~-----------~L~~~F-~~~G~i~~v~i~~~-----~g~afV~f~~ 55 (111)
T 1whx_A 9 SKTVILAKNLPAG----------------TLAA-----------EIQETF-SRFGSLGRVLLPEG-----GITAIVEFLE 55 (111)
T ss_dssp EEEEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCSS-----SSCEEEEESC
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEeCC-----CCEEEEEeCC
Confidence 4578999998652 3333 566777 79999999999853 7999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~ 138 (189)
.++|.+|++.|||..|+|++|.|+|+....|.
T Consensus 56 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 87 (111)
T 1whx_A 56 PLEARKAFRHLAYSKFHHVPLYLEWAPIGVFG 87 (111)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEEEETTTTC
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCCCccC
Confidence 99999999999999999999999999776653
No 79
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1e-12 Score=90.79 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=65.2
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV 102 (189)
..+..+++|.+.|+... ++++ ||++.| ++||+|.+|.+..+ +|++||
T Consensus 7 ~~~~~~~~l~V~~l~~~----------------~t~~-----------~l~~~f-~~~G~i~~~~~~~~-----kg~afV 53 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDT----------------ITET-----------DLRNHF-YQFGEIRTITVVQR-----QQCAFI 53 (85)
T ss_dssp CSCSSCCCEEEECCTTT----------------SCHH-----------HHHHHH-HTTSCEEEEEEEGG-----GTEEEE
T ss_pred CCCCCccEEEEcCCCCC----------------CCHH-----------HHHHHH-HhCCCEeEEEEECC-----CCEEEE
Confidence 33456789999998763 3333 566777 79999999999974 799999
Q ss_pred EecCHHHHHHHHHHh-CCCEeCCeeEEEEec
Q psy12245 103 KFRREEDAEKAVNDL-NNRWFGGRPVYAELS 132 (189)
Q Consensus 103 ~F~~~e~A~~A~~~L-nGr~f~GR~I~v~~~ 132 (189)
+|.+.++|.+|++.| ||..++|++|.|+|+
T Consensus 54 ~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 54 QFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp EESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred EECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 999999999999999 999999999999986
No 80
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=7.4e-13 Score=96.67 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=64.9
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
...+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|... +|++||+|
T Consensus 12 ~~p~~~l~V~nLp~~----------------~te~-----------~L~~~F-~~fG~V~~v~i~~~-----kg~aFVef 58 (104)
T 1wex_A 12 VSVSPVVHVRGLCES----------------VVEA-----------DLVEAL-EKFGTICYVMMMPF-----KRQALVEF 58 (104)
T ss_dssp CCCCSEEEEESCCSS----------------CCHH-----------HHHHHH-TTTSCEEEEEEETT-----TTEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEECC-----CCEEEEEE
Confidence 346799999998652 4444 566677 79999999999864 79999999
Q ss_pred cCHHHHHHHHHHhCCC--EeCCeeEEEEeccCcc
Q psy12245 105 RREEDAEKAVNDLNNR--WFGGRPVYAELSPVTD 136 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr--~f~GR~I~v~~~~~~~ 136 (189)
++.++|.+|++.|||. .++|++|.|+|+....
T Consensus 59 ~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 59 ENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp SSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 9999999999999765 5999999999985543
No 81
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=9e-13 Score=95.98 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=69.2
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCee--------EEEEeeC-CCCC
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIE--------EMNVCDN-LGDH 95 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~--------~v~i~~~-~~~~ 95 (189)
...+++|+|.|+-.. ++++ ||++.| ++||.|. .|.|..+ .++.
T Consensus 12 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~ 63 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDS----------------VTLD-----------DLADFF-KQCGVVKMNKRTGQPMIHIYLDKETGK 63 (113)
T ss_dssp CCCCCEEEEECCCTT----------------CCHH-----------HHHHHH-TTTSCBCBCSSSCCBSEECCBCTTTCS
T ss_pred CCCCCEEEEcCCCCC----------------CCHH-----------HHHHHH-HhcCCEeEccccCccCEEEEEeCCCCC
Confidence 446789999999752 3443 566677 7999999 6999877 4578
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 96 LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 96 ~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+|++||+|.+.++|.+|++.|||..|+|+.|.|.++..
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 899999999999999999999999999999999999844
No 82
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.42 E-value=1.3e-12 Score=98.48 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=57.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
||++.| ++||+|++|.|..+. ++..+|++||+|.+.++|.+|++.|||..++|+.|.|.++....
T Consensus 58 ~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 58 QLRQLF-ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHHHH-HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCC
T ss_pred HHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 567777 699999999998764 46789999999999999999999999999999999999985543
No 83
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.42 E-value=3.4e-13 Score=95.07 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=65.5
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~ 103 (189)
+..+.+|.|.|+... ++++ ||++.| ++||.|..+.+..+ .++..+|++||+
T Consensus 12 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~ 63 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFT----------------VSID-----------EILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVA 63 (95)
T ss_dssp ---CEEEEEECCCTT----------------CCHH-----------HHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEE
Confidence 345689999999652 3443 566677 79999998877754 346789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
|.+.++|.+|++.|||..++||+|.|+++.
T Consensus 64 f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 64 FESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 999999999999999999999999999874
No 84
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.9e-12 Score=97.20 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=68.5
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~ 103 (189)
+..+.+|.+.|+... ++++ ||++.| ++||.|.++.+..+ .++.++|++||+
T Consensus 84 ~~~~~~l~v~nl~~~----------------~t~~-----------~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~ 135 (166)
T 3md3_A 84 SDDTFNLFVGDLNVN----------------VDDE-----------TLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVS 135 (166)
T ss_dssp CTTCEEEEEESCCTT----------------CCHH-----------HHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCceEEECCCCCC----------------CCHH-----------HHHHHH-hccCCeeEEEEEecCCCCCcceEEEEE
Confidence 445678899888652 3333 677778 79999999999977 457889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
|.+.++|.+|++.|||..++|++|.|.|+.
T Consensus 136 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 136 FTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999999999974
No 85
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.42 E-value=7.4e-13 Score=98.19 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=67.5
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+.+|+|.|+-.. ++++ ||++.| ++||.|.+|.|+.+. ++..+|++||+|.
T Consensus 21 ~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 72 (126)
T 3ex7_B 21 EGWILFVTGVHEE----------------ATEE-----------DIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYE 72 (126)
T ss_dssp SSEEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCBCTTTSSBCSCEEEEES
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEEC
Confidence 4578999998652 3443 566677 699999999998774 5678999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.++|.+|++.|||..++|+.|.|+++.
T Consensus 73 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 73 TYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 9999999999999999999999999983
No 86
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.1e-13 Score=95.66 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=68.5
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+++|.|.|+-.. ++++ ||++.| ++||+|.++.|..+. ++..+|++||+|.
T Consensus 7 ~~~~l~V~nlp~~----------------~~~~-----------~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 58 (104)
T 1p1t_A 7 SLRSVFVGNIPYE----------------ATEE-----------QLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQ 58 (104)
T ss_dssp HHSCEEEESCCTT----------------SCHH-----------HHHHHH-HTTSCCSEEEEEEETTTTEEEEEEEEECS
T ss_pred CccEEEEeCCCCc----------------CCHH-----------HHHHHH-HhcCCeeEEEEEeCCCCCccceEEEEEEC
Confidence 4578999998752 3443 566777 799999999998764 5688999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
+.++|.+|++.|||..++|+.|.|.++...
T Consensus 59 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 59 DQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp CHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred CHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 999999999999999999999999998543
No 87
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.41 E-value=2.7e-12 Score=98.74 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEe
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKF 104 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F 104 (189)
..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+|
T Consensus 37 ~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f 88 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFY----------------TTEE-----------QIYELF-SKSGDIKKIIMGLDKMKKTACGFCFVEY 88 (156)
T ss_dssp TTCCEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEE
Confidence 35688999888642 3443 567777 799999999998875 467899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++|++|.|+++..
T Consensus 89 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 89 YSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp SSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 999999999999999999999999999853
No 88
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.41 E-value=8.8e-13 Score=94.85 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=69.8
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYI 102 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV 102 (189)
.+..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||
T Consensus 9 ~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV 60 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRN----------------LDEK-----------DLKPLF-EEFGKIYELTVLKDRFTGMHKGCAFL 60 (106)
T ss_dssp CCTTCEEEEEESCCTT----------------CCHH-----------HHHHHH-HHHSCCCEEECCCCSSSCSCCSEEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeeEEEEEecCCCCCcceEEEE
Confidence 4556789999999752 3443 567777 699999999998864 4678999999
Q ss_pred EecCHHHHHHHHHHhCCCEe---CCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWF---GGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f---~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|||..+ .|++|.|.++..
T Consensus 61 ~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 61 TYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp EESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred EECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 99999999999999999998 999999999854
No 89
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8.5e-13 Score=99.01 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=65.9
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+++|.|.|+... ++++ ||++.| ++||+|++|.|+.+ +|++||+|
T Consensus 28 ~~ps~~LfVgNLp~~----------------vte~-----------dL~~lF-~~fG~V~~v~i~~~-----kG~AFVeF 74 (119)
T 2ad9_A 28 GVPSRVIHIRKLPID----------------VTEG-----------EVISLG-LPFGKVTNLLMLKG-----KNQAFIEM 74 (119)
T ss_dssp SSCCSEEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCCCEEEEEGG-----GTEEEEEC
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEeCC-----CCEEEEEE
Confidence 446789999998863 3444 566677 79999999999875 79999999
Q ss_pred cCHHHHHHHHHHhCC--CEeCCeeEEEEeccCcc
Q psy12245 105 RREEDAEKAVNDLNN--RWFGGRPVYAELSPVTD 136 (189)
Q Consensus 105 ~~~e~A~~A~~~LnG--r~f~GR~I~v~~~~~~~ 136 (189)
++.++|.+|++.|+| ..++||+|.|+|+....
T Consensus 75 ~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 75 NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp SCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 999999999999984 68999999999985433
No 90
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-12 Score=93.31 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+ +|++||+
T Consensus 11 ~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~~~~~-----kg~afV~ 57 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPD----------------ITEE-----------EMRKLF-EKYGKAGEVFIHKD-----KGFGFIR 57 (99)
T ss_dssp CCCCTTEEEEESCCTT----------------CCHH-----------HHHHHT-STTCCCSEEEEETT-----TTEEEEE
T ss_pred cCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-hhcCCeEEEEEecC-----CCEEEEE
Confidence 3456789999999652 3443 566777 79999999999865 7999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 58 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 58 LETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred ECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 9999999999999999999999999999843
No 91
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.5e-12 Score=91.40 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||+|.+|.|.. .+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 29 ~l~~~F-~~~G~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 29 LLRGAF-SPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp HHHHHH-TTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred HHHHHH-hhCCCEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 566777 7999999999964 489999999999999999999999999999999999854
No 92
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.41 E-value=2.6e-12 Score=98.54 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+.+|.+.|+... ++++ ||++.| ++||+|.++.|..+. ++.++|++||+
T Consensus 91 ~~~~~~l~v~nlp~~----------------~t~~-----------~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNY----------------LNDD-----------QVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp CTTTTCEEEECCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred CCCCCEEEEEcCCCc----------------CCHH-----------HHHHHH-HhcCCceEEEEEecCCCCCcceEEEEE
Confidence 445688999988652 3333 677788 699999999999874 67889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|.+.++|.+|++.|||..++|++|.|+++
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 143 YVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999999986
No 93
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.9e-12 Score=94.82 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=68.2
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+...++|+|.||-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+
T Consensus 14 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~ 65 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYH----------------TTDA-----------SLRKYF-EGFGDIEEAVVITDRQTGKSRGYGFVT 65 (116)
T ss_dssp SCSSSEEEEECCCSS----------------CCHH-----------HHHHHH-HTTSCEEEEEESCCSSSCCCCSEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCeeEEEEEEcCCCCccceEEEEE
Confidence 345689999999752 3443 566677 699999999999874 46789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|++|++.||| .|+|+.|.|+++..
T Consensus 66 f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 66 MADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp ESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred ECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 9999999999999999 89999999999843
No 94
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=9.7e-12 Score=94.35 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=68.9
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
++++|++.|+... ++++ ||++.| ++||+|.++.+..+. ++..+|++||+|.
T Consensus 1 s~~~l~v~nlp~~----------------~~~~-----------~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~ 52 (167)
T 1fxl_A 1 SKTNLIVNYLPQN----------------MTQE-----------EFRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYI 52 (167)
T ss_dssp CCSEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CcceEEEcCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEeCCCCCcceeEEEEEEC
Confidence 4689999998763 3443 566677 799999999999875 6788999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||..+.|++|.+.++..
T Consensus 53 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 53 DPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 99999999999999999999999999854
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.2e-12 Score=92.52 Aligned_cols=81 Identities=11% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
...+.+|+|.|+... ++++ ||++.| ++||+|.++.|+.+.++..+|++||+|
T Consensus 22 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~~~i~~~~~g~~~g~afV~f 73 (114)
T 1x5o_A 22 EQDPTNLYISNLPLS----------------MDEQ-----------ELENML-KPFGQVISTRILRDSSGTSRGVGFARM 73 (114)
T ss_dssp CCCTTEEEEESCCTT----------------CCHH-----------HHHHTT-TTTSCEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEEECCCCCcceEEEEEE
Confidence 345689999998653 3443 566677 799999999999877778899999999
Q ss_pred cCHHHHHHHHHHhCCCEe--------CCeeEEEEecc
Q psy12245 105 RREEDAEKAVNDLNNRWF--------GGRPVYAELSP 133 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f--------~GR~I~v~~~~ 133 (189)
.+.++|.+|++.|||..+ .|++|.|.|+.
T Consensus 74 ~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 74 ESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp SCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred CCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 999999999999999999 57889999984
No 96
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.4e-13 Score=97.86 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=75.0
Q ss_pred CCCCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeee
Q psy12245 19 SRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVG 98 (189)
Q Consensus 19 ~~~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G 98 (189)
++.+..+..+.+|.|.||... ++++ ||++.| ++| .|.+|.|+.+..+..+|
T Consensus 7 ~~~~~~~~~~~~v~V~nLp~~----------------~te~-----------dl~~~F-~~~-~v~~v~i~~d~~g~~~G 57 (109)
T 2dnn_A 7 GKPLPINPDDLYVSVHGMPFS----------------AMEN-----------DVRDFF-HGL-RVDAVHLLKDHVGRNNG 57 (109)
T ss_dssp CCCCCCCHHHHEEEEECCCSS----------------CCHH-----------HHHHHT-TTS-CCCEEEECCCTTCCCCS
T ss_pred CCCCCCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHh-ccC-CeeEEEEEECCCCCCCe
Confidence 444444445679999999763 3443 566777 699 89999999876678899
Q ss_pred EEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhhh
Q psy12245 99 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREAC 141 (189)
Q Consensus 99 ~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~~ 141 (189)
++||+|.+.++|.+|+ .|||..++||.|.|..+....|..+.
T Consensus 58 ~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~~~ 99 (109)
T 2dnn_A 58 NGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWVAAG 99 (109)
T ss_dssp EEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHHHHH
T ss_pred EEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchhhcC
Confidence 9999999999999999 69999999999999998777776554
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.40 E-value=4.6e-12 Score=87.94 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=65.9
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|.|.|+... ++++ ||++.| ++||+|.++.|+.+. ++..+|++||+
T Consensus 8 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~ 59 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWD----------------TSKK-----------DLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFIL 59 (87)
T ss_dssp CSCTTEEEEECCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEeecCCCCccccEEEEE
Confidence 456789999999652 3443 566677 799999999999774 47889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|.+.++|.+|++ ++|..++|++|.|.++
T Consensus 60 f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 60 FKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp ESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred ECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 999999999996 5889999999999864
No 98
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.40 E-value=4.5e-13 Score=94.18 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=54.9
Q ss_pred HHHHHHhhcCC--CeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG--~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||++.| ++|| .|.++.|..+. ++..+|++||+|.+.++|.+|++.|||..++||.|.|.++.
T Consensus 17 ~l~~~F-~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 17 DLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp HHHHHH-HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred HHHHHH-HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 566677 7999 99999999874 57889999999999999999999999999999999999874
No 99
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.39 E-value=2.8e-12 Score=91.70 Aligned_cols=77 Identities=22% Similarity=0.356 Sum_probs=63.7
Q ss_pred CCCCCCCCeEEecCCCC-CccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEE
Q psy12245 22 HNKPTFSQTILLLNLYI-NPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNV 100 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~v 100 (189)
+..+..+++|+|.|+-. . ++++ ||++.| ++||.|.+|.|. +|++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~----------------~t~~-----------~L~~~F-~~~G~v~~v~i~-------~g~a 60 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKN----------------VSKE-----------DLFRIF-SPYGHIMQINIK-------NAFG 60 (97)
T ss_dssp ---CCTTCEEEEESCCSSC----------------CCHH-----------HHHHHH-GGGSCEEEEEEC-------SSEE
T ss_pred cCCCCCCCEEEEeCCCccc----------------CCHH-----------HHHHHH-HhcCCEEEEEEe-------CCEE
Confidence 34455788999999874 3 3333 566777 799999999994 7999
Q ss_pred EEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 101 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 101 fV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||+|.+.++|.+|++.|||..++|+.|.|+++.
T Consensus 61 fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 61 FIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp EEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred EEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 999999999999999999999999999999974
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.3e-12 Score=93.41 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=65.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+.+|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+ +|++||+|
T Consensus 22 ~~~~~~l~V~nl~~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~-----~g~afV~f 68 (109)
T 1x4g_A 22 SPKNCTVYCGGIASG----------------LTDQ-----------LMRQTF-SPFGQIMEIRVFPE-----KGYSFVRF 68 (109)
T ss_dssp CSSCCEEEEECCSSC----------------CCHH-----------HHHHHH-HHHSCEEEEEEETT-----TTEEEEEE
T ss_pred CCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEeCC-----CCEEEEEE
Confidence 446789999998763 3443 566677 69999999999976 79999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++|++|.|.++..
T Consensus 69 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 69 STHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 999999999999999999999999999843
No 101
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=94.41 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=63.0
Q ss_pred CCCe-EEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcC-CCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 27 FSQT-ILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKY-GEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 27 ~S~~-v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kf-G~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
++.| |++.|+... ++++ ++..+|++.| ++| |+|.+|. .|++||+|
T Consensus 7 p~~T~lYV~NL~~~----------------~~~~-------~lk~~L~~lF-~~yGG~Vl~Vt---------gG~AfV~F 53 (96)
T 2diu_A 7 GCHTLLYVYNLPAN----------------KDGK-------SVSNRLRRLS-DNCGGKVLSIT---------GCSAILRF 53 (96)
T ss_dssp CSSEEEEEESCCTT----------------SCHH-------HHHHHHHHHH-HTTTCCEEECC---------TTCEEEEE
T ss_pred CcceEEEEeCCCCc----------------CCHH-------HHHHHHHHHH-HHcCCeeEEEe---------cCEEEEEE
Confidence 4677 779999874 3333 5566899999 799 5999991 29999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..+.||+|+++|+..
T Consensus 54 ~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 54 INQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred CCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 999999999999999999999999999843
No 102
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=8.6e-13 Score=93.61 Aligned_cols=81 Identities=22% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~ 103 (189)
+..+.+|.|.|+... ++++ ||++.| ++||.|.++.++.+ .++..+|++||+
T Consensus 12 ~~~~~~l~v~nLp~~----------------~t~~-----------~l~~~F-~~~G~v~~~~~~~~~~~g~~~g~afV~ 63 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFT----------------VSID-----------EILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVA 63 (98)
T ss_dssp CCSSEEEEEESCCTT----------------CCHH-----------HHHHHT-TTSCCCTTTCEEEECSSSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHcCCccceEEEEECCCCCeeeEEEEE
Confidence 345678999998642 3443 566677 79999987776654 456789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
|.+.++|++|++.|||..++|++|.|+++.
T Consensus 64 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 64 FESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp ESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 999999999999999999999999999974
No 103
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=9.4e-13 Score=97.49 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=71.1
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCC---eeEEEEeeCCCCCeeeEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGE---IEEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~---I~~v~i~~~~~~~~~G~vf 101 (189)
+..+.+|.|.|+-.. +|++ ||++.| ++||. |.+|.|+.+..+..+|++|
T Consensus 14 ~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~~~~v~~v~i~~~~~g~~~G~af 65 (118)
T 2db1_A 14 GGEGYVVKLRGLPWS----------------CSIE-----------DVQNFL-SDCTIHDGVAGVHFIYTREGRQSGEAF 65 (118)
T ss_dssp BCCCCEEEEESCCTT----------------CCHH-----------HHHHHT-TTSCBTTGGGGEEEEECSSSCEEEEEE
T ss_pred CCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HHcCCccCceeEEEEECCCCCCCeEEE
Confidence 345678999998763 3443 566677 79999 8999999876688999999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchh
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFRE 139 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~ 139 (189)
|+|.+.++|.+|++ |||..++||.|.|.++....+..
T Consensus 66 V~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~ 102 (118)
T 2db1_A 66 VELESEDDVKLALK-KDRESMGHRYIEVFKSHRTEMDW 102 (118)
T ss_dssp EEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHHHHH
T ss_pred EEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHHHHH
Confidence 99999999999999 99999999999999986554433
No 104
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.3e-12 Score=96.94 Aligned_cols=90 Identities=26% Similarity=0.382 Sum_probs=71.1
Q ss_pred CCCCCCCCCCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC
Q psy12245 13 RHGDRCSRIHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL 92 (189)
Q Consensus 13 r~g~~C~~~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~ 92 (189)
.+|+.=.+....+..+++|.|.|+-.. .++++ ||++.| ++||+|.+|.|.+.
T Consensus 10 ~~~~~~k~~~~~~~p~~~l~V~NLp~~---------------~~te~-----------~L~~lF-~~fG~V~~v~i~~~- 61 (112)
T 1x4f_A 10 PEGKPDQKFDQKQELGRVIHLSNLPHS---------------GYSDS-----------AVLKLA-EPYGKIKNYILMRM- 61 (112)
T ss_dssp SCCCCCCCCCCSSCCCCEEEEESCCCS---------------SCCSH-----------HHHTTT-TTTSCCSEEEEETT-
T ss_pred ccCChhhhccccCCCCCEEEEeCCCCc---------------cCCHH-----------HHHHHH-HhcCCEEEEEEecC-
Confidence 455444454556777999999999862 03344 566677 79999999999854
Q ss_pred CCCeeeEEEEEecCHHHHHHHHHHhC--CCEeCCeeEEEEeccC
Q psy12245 93 GDHLVGNVYIKFRREEDAEKAVNDLN--NRWFGGRPVYAELSPV 134 (189)
Q Consensus 93 ~~~~~G~vfV~F~~~e~A~~A~~~Ln--Gr~f~GR~I~v~~~~~ 134 (189)
+|++||+|++.++|.+|++.|| +..++||+|.|+++..
T Consensus 62 ----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 62 ----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp ----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred ----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 7999999999999999999886 4569999999999843
No 105
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-12 Score=89.91 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=64.4
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|. +|++||+|
T Consensus 5 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~~~-------~g~afV~f 49 (90)
T 2dnq_A 5 SSGMVKLFIGNLPRE----------------ATEQ-----------EIRSLF-EQYGKVLECDII-------KNYGFVHI 49 (90)
T ss_dssp SSCCEEEEEESCCSS----------------CCHH-----------HHHHHH-HTSSCEEEEEEE-------TTEEEEEE
T ss_pred CCCCeEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEE-------CCEEEEEE
Confidence 556789999999652 3443 566677 799999999998 58999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++|++|.|+++..
T Consensus 50 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 50 EDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 999999999999999999999999999844
No 106
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.5e-13 Score=93.26 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=66.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|.|.|+... ++++ ||++.| ++||+|.++.|+.+. ++..+|++||+
T Consensus 2 ~~~~~~l~v~nlp~~----------------~t~~-----------~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~ 53 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPG----------------TTDQ-----------DLVKLC-QPYGKIVSTKAILDKTTNKCKGYGFVD 53 (85)
T ss_dssp CCCCCEEEEESCCTT----------------CCHH-----------HHHTTS-TTTSCEEEEEEECCSSSCSCCSEEEEE
T ss_pred CCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCCCCcCcEEEEE
Confidence 457889999998652 3444 466677 799999999998764 46789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|.+.++|.+|++.|||..++|+.|.+.+.
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 54 FDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred ECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 99999999999999999999999987654
No 107
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.7e-12 Score=96.77 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEe-----CCeeEEEEeccCccc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-----GGRPVYAELSPVTDF 137 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f-----~GR~I~v~~~~~~~f 137 (189)
||++.| ++||+|.+|.|+.. +|++||+|++.++|.+|++.|||+.+ .|++|++.|+....|
T Consensus 43 ~L~~~F-~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 43 QLLPVL-EKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp HHHHHH-HHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred HHHHHH-HhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 667778 79999999998753 79999999999999999999999999 799999999855444
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.37 E-value=3.4e-12 Score=93.16 Aligned_cols=75 Identities=16% Similarity=0.382 Sum_probs=63.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+.+|.|.|+-.. ++++ ||++.| ++||.|.+|.|. +|++||+|
T Consensus 28 ~~~~~~l~V~nLp~~----------------~t~~-----------~L~~~F-~~~G~i~~v~i~-------kg~afV~f 72 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLD----------------VQES-----------ELNEIF-GPFGPMKEVKIL-------NGFAFVEF 72 (108)
T ss_dssp CCSCSEEEECSSCTT----------------CCHH-----------HHHHHH-TTTSCCCEEEEE-------TTEEEEEC
T ss_pred CCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEE-------CCEEEEEE
Confidence 446688999888542 3433 567777 799999999998 69999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++|+.|.|+++..
T Consensus 73 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 73 EEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 999999999999999999999999999843
No 109
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.9e-12 Score=94.51 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=55.3
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCC-CCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLG-DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~-~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||.|.+|.|..+.. +..+|++||+|.+.++|.+|+ .|||..|+|+.|.|.++..
T Consensus 41 ~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 41 DLEDFF-SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHHHHH-TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred HHHHHH-HhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 566677 7999999999987653 678999999999999999999 9999999999999999743
No 110
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.37 E-value=8.7e-13 Score=94.54 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=65.0
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC--CCCeeeEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL--GDHLVGNVYI 102 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~--~~~~~G~vfV 102 (189)
+..+++|.|.|+-.. ++++ ||++.| ++|| |.+|.|..+. ++..+|++||
T Consensus 16 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV 66 (100)
T 2j76_E 16 KSPPYTAFLGNLPYD----------------VTEE-----------SIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYA 66 (100)
T ss_dssp ----CEEEESCCSSC----------------CSSS-----------HHHHHS-CSSC-EEEEECSCCTTTTCCCCSCEEE
T ss_pred CCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcC-CeEEEEEecCCcCCccCeEEEE
Confidence 345789999999653 3333 566677 7999 9999999874 5788999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|+ .|||..++|+.|.|+++..
T Consensus 67 ~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 67 EFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp EECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred EECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 999999999999 8999999999999999743
No 111
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4.8e-12 Score=88.98 Aligned_cols=76 Identities=22% Similarity=0.391 Sum_probs=64.4
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.+..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|. +|++||+
T Consensus 6 ~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~v~~v~~~-------~~~afV~ 50 (92)
T 2dgt_A 6 SGKASTKLHVGNISPT----------------CTNQ-----------ELRAKF-EEYGPVIECDIV-------KDYAFVH 50 (92)
T ss_dssp CCCSSEEEEEESCCSS----------------CCHH-----------HHHHHH-HTTSCCCEEEEC-------SSEEEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEE-------CCEEEEE
Confidence 4556789999999652 3443 566677 799999999997 4599999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|+.|.|+++..
T Consensus 51 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 51 MERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp ESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 9999999999999999999999999999843
No 112
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=9.7e-13 Score=97.80 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=70.4
Q ss_pred CCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeE-EEEeeCCCCCeeeE
Q psy12245 21 IHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGN 99 (189)
Q Consensus 21 ~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~-v~i~~~~~~~~~G~ 99 (189)
....+....+|.|.||-.. ++++ ||++.| ++||.|.+ +.+..+.++..+|+
T Consensus 18 ~~~~~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~v~~~~~~~~~~~g~~~G~ 69 (124)
T 1wel_A 18 SRSPHEAGFCVYLKGLPFE----------------AENK-----------HVIDFF-KKLDIVEDSIYIAYGPNGKATGE 69 (124)
T ss_dssp CSSCCCCCCEEEEECCCTT----------------CCHH-----------HHHHHS-CSSCBCTTTCEEEECTTSSEEEE
T ss_pred CCCCCCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCccceEEEEECCCCCCCeE
Confidence 3344456689999999753 3443 566677 79999998 55555556788999
Q ss_pred EEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy12245 100 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 137 (189)
Q Consensus 100 vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f 137 (189)
+||+|.+.++|.+|++ |||..++||.|.|.++....+
T Consensus 70 afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 70 GFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp EEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHH
T ss_pred EEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHH
Confidence 9999999999999999 999999999999999865544
No 113
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.37 E-value=5.7e-12 Score=98.09 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=66.4
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+.+|+|.||-.. ++++ +|++.| ++||+|..|.|+.+. ++..+|++||+|.
T Consensus 71 ~~~~l~V~nLp~~----------------~t~~-----------~L~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 122 (165)
T 1rk8_A 71 EGWILFVTSIHEE----------------AQED-----------EIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYE 122 (165)
T ss_dssp -CEEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEES
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHh-hcCCCEEEEEEEecCCCCcEeeEEEEEEC
Confidence 3467999998752 3333 566777 799999999999873 5788999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+.++|.+|+..|||..+.|++|.|.|+
T Consensus 123 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 123 THKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 999999999999999999999999997
No 114
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.7e-12 Score=92.67 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=64.3
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
|..+.+|.|.|+-.. ++++ ||++.| ++||.|.++.+... +|++||+|
T Consensus 24 ~~~~~~l~V~nlp~~----------------~~~~-----------~l~~~f-~~~G~i~~~~~~~~-----~g~afV~f 70 (101)
T 2la4_A 24 PPRVTTAYIGNIPHF----------------ATEA-----------DLIPLF-QNFGFILDFKHYPE-----KGCCFIKY 70 (101)
T ss_dssp CSSCCEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCCSEEEEETT-----TTEEEEEC
T ss_pred CCCCCEEEEcCCCcc----------------cCHH-----------HHHHHH-HhCCCEEEEEEecC-----CCEEEEEE
Confidence 445789999998752 3443 566677 79999999999843 79999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 71 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 71 DTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 99999999999999999999999998864
No 115
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.2e-12 Score=89.50 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=64.6
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.+..+++|.+.|+-.. ++++ ||++.| ++||+|.+|.|. +|++||+
T Consensus 5 ~~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~v~~~~~~-------~~~afV~ 49 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAA----------------CTSQ-----------ELRSLF-ERRGRVIECDVV-------KDYAFVH 49 (90)
T ss_dssp SSCCSCCEEEESCCTT----------------CCHH-----------HHHHHH-HHHSCEEEEEEC-------SSCEEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HcCCCEEEEEEE-------CCEEEEE
Confidence 4567789999999753 3443 566677 699999999998 4599999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 50 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 50 MEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 9999999999999999999999999999844
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.37 E-value=5.1e-12 Score=90.71 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=63.0
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|. +|++||+|.
T Consensus 9 ~~~~~l~V~nl~~~----------------~t~~-----------~l~~~F-~~~G~i~~v~~~-------~~~afV~f~ 53 (103)
T 2dgu_A 9 AKVKVLFVRNLANT----------------VTEE-----------ILEKAF-SQFGKLERVKKL-------KDYAFIHFD 53 (103)
T ss_dssp CCCCCEEEECCCTT----------------CCHH-----------HHHHHH-HHHSCEEEEEEC-------SSCEEEEES
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEE-------CCEEEEEeC
Confidence 45689999998753 3443 566677 699999999987 579999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||..++|++|.|.++..
T Consensus 54 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 54 ERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 99999999999999999999999999843
No 117
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3e-12 Score=92.00 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|+|.|+... ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+
T Consensus 13 ~~~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~ 64 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWS----------------TTQE-----------TLRSYF-SQYGEVVDCVIMKDKTTNQSRGFGFVK 64 (105)
T ss_dssp SSSSSEECCBSCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEeeCCCCCCcceEEEEE
Confidence 456789999998653 3443 566677 799999999999874 56889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
|.+.++|.+|+.. ||..++|+.|.|.++.
T Consensus 65 f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 65 FKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp ESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred ECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 9999999999998 9999999999999974
No 118
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.7e-12 Score=95.24 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCe-eEEEEeeCCCCCeeeEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEI-EEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I-~~v~i~~~~~~~~~G~vf 101 (189)
..|..+.+|.|.||... ++++ ||++.| ++||.| .+|.|+.+.++..+|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~g~v~~~v~i~~d~~g~~~G~af 61 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFS----------------ITKM-----------DVLQFL-EGIPVDENAVHVLVDNNGQGLGQAL 61 (114)
T ss_dssp SCCSCCCEEEEESCCTT----------------SCHH-----------HHHHHT-TTSCCCSTTEEECCCTTSSCSSCEE
T ss_pred CCCCCccEEEEeCcCCc----------------CCHH-----------HHHHHH-HhCCCcCCeEEEEECCCCCcceEEE
Confidence 34667789999999753 4444 566677 799999 899998877778899999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~ 138 (189)
|+|.+.++|.+|++. ||..++||.|.|.++......
T Consensus 62 V~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~ 97 (114)
T 2cpy_A 62 VQFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMR 97 (114)
T ss_dssp EECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHH
T ss_pred EEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHH
Confidence 999999999999987 999999999999998554433
No 119
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.5e-12 Score=93.04 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=69.3
Q ss_pred CCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEE
Q psy12245 22 HNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vf 101 (189)
...|..+.+|.|.||... ++++ ||++.| ++||.| +|.|+.+.++..+|++|
T Consensus 9 ~~~~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~~-~v~i~~d~~g~~~G~af 59 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYR----------------ATEN-----------DIYNFF-SPLNPM-RVHIEIGPDGRVTGEAD 59 (102)
T ss_dssp SCCCSSSCEEEEESCCTT----------------CCHH-----------HHHHSS-CSCCCS-EEEEEESSSSCEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHcCce-EEEEEECCCCCEeeEEE
Confidence 456778899999999763 3444 566677 799955 99999877788999999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|+|++.++|++|++ |||..++||.|.|..+..
T Consensus 60 V~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 60 VEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp EECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred EEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 99999999999995 899999999999988754
No 120
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.6e-12 Score=92.73 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=70.5
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeE-EEEeeCCCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~-v~i~~~~~~~~~G~vfV~ 103 (189)
+..+.+|.+.|+... ++++ ||++.| ++||.|.+ |.|+.+.++..+|++||+
T Consensus 12 ~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~v~~~v~i~~~~~g~~~G~afV~ 63 (104)
T 1wg5_A 12 TANDGFVRLRGLPFG----------------CSKE-----------EIVQFF-SGLEIVPNGMTLPVDFQGRSTGEAFVQ 63 (104)
T ss_dssp CSCCCEEEEESCCTT----------------CCHH-----------HHHHHT-TTCCEEEEEEECCBCSSSCBCSEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCcceeEEEEECCCCCcceEEEEE
Confidence 446789999998763 3333 567777 79999998 888877667889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~ 138 (189)
|.+.++|.+|++. ||..++||.|.|.++....+.
T Consensus 64 F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 64 FASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVR 97 (104)
T ss_dssp ESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSC
T ss_pred ECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHH
Confidence 9999999999997 999999999999998655443
No 121
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=91.15 Aligned_cols=80 Identities=31% Similarity=0.325 Sum_probs=65.5
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.+..+++|.|.|+-.. ++++ ||++.| ++||.| .|+.+..+..+|++||+
T Consensus 11 ~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~g~v---~~~~~~~g~~~g~afV~ 59 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYS----------------ATEE-----------TLQEVF-EKATFI---KVPQNQNGKSKGYAFIE 59 (101)
T ss_dssp CSCCCSEEEEESCCTT----------------CCHH-----------HHHHHC-SSCSEE---ECCBCSSSCBCSEEEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCEE---EEEECCCCCEeeEEEEE
Confidence 3456799999999753 3443 566677 799987 45555556789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|+.|.|+++..
T Consensus 60 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 60 FASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred ECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 9999999999999999999999999999844
No 122
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.36 E-value=4.1e-12 Score=97.48 Aligned_cols=82 Identities=16% Similarity=0.306 Sum_probs=69.0
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+.+|.|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+
T Consensus 67 ~~~~~~l~v~nl~~~----------------~~~~-----------~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~ 118 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYR----------------TSPD-----------TLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVR 118 (158)
T ss_dssp CCBCCEEEEESCCTT----------------CCHH-----------HHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEeecCCCCccceEEEEE
Confidence 345678889888652 3443 566777 799999999999874 57889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 119 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 119 FHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp ESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 9999999999999999999999999999854
No 123
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=7.6e-12 Score=95.38 Aligned_cols=80 Identities=24% Similarity=0.410 Sum_probs=67.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+.+|.+.|+... ++++ ||++.| ++||.|..+.|+.+. ++..+|++||+
T Consensus 86 ~~~~~~l~v~nl~~~----------------~t~~-----------~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~ 137 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRT----------------ITDD-----------QLDTIF-GKYGSIVQKNILRDKLTGRPRGVAFVR 137 (168)
T ss_dssp TTTTCEEEEESCCTT----------------CCHH-----------HHHHHH-TSSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred cCCCCCEEEeCCCCC----------------CCHH-----------HHHHhh-hcCCcEEEEEEEEcCCCCCcceEEEEE
Confidence 345678999988752 3333 577778 799999999999875 57789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCC--eeEEEEec
Q psy12245 104 FRREEDAEKAVNDLNNRWFGG--RPVYAELS 132 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~G--R~I~v~~~ 132 (189)
|.+.++|.+|++.|||+.++| ++|.|.|+
T Consensus 138 f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 138 YNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999999988 99999885
No 124
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.36 E-value=4.8e-12 Score=113.37 Aligned_cols=80 Identities=18% Similarity=0.331 Sum_probs=67.6
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+.+|+|.||-.. +|++ +|++.| ++||+|+.|.|+.+. ++..+|++||+|.
T Consensus 101 ~~~~lfV~nL~~~----------------~te~-----------~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~ 152 (437)
T 3pgw_S 101 AFKTLFVARVNYD----------------TTES-----------KLRREF-EVYGPIKRIHMVYSKRSGKPRGYAFIEYE 152 (437)
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHcCCeeEEEeeccCCCCCccceEEEeec
Confidence 4578999988542 3443 566677 799999999998764 5678999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|+..|||.+|+|++|.|.++..
T Consensus 153 ~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 153 HERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred cHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 99999999999999999999999999853
No 125
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.36 E-value=3.4e-12 Score=94.30 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=55.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||++.| ++||.|.+|.|..+ .++..+|++||+|.+.++|.+|+ .|||..|+|+.|.|+++.
T Consensus 52 ~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 52 DLEAHF-SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHHHH-HTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred HHHHHH-HhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 567777 79999999999876 35678999999999999999999 799999999999999974
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.35 E-value=5.7e-12 Score=98.04 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=57.1
Q ss_pred HHHHHHhhcCC--CeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG--~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++|| .|.+|.|+.+. ++..+|++||+|.+.++|.+|+..|||..++||.|.|.++..
T Consensus 71 ~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 71 QLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred HHHHHH-HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 566777 7999 99999998774 578899999999999999999999999999999999999843
No 127
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=9.7e-12 Score=94.65 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=52.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeE-EEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~-vfV~F~~~e~A~~A~~~LnGr~f~G--R~I~v~~~~~ 134 (189)
+|++.| ++||+|.+|+|.... +|+ +||+|.+.++|.+|++.|||..+.| +.|.++|+..
T Consensus 44 ~L~~lF-s~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 44 VLHQIF-SKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp HHHHHH-TTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred HHHHHH-hCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 456667 799999999998642 677 9999999999999999999999988 9999999854
No 128
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.35 E-value=5.4e-12 Score=96.65 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=66.6
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+.+|.|.|+... ++++ ||++.| ++||.|.++.|+.+..+.++|++||+|.+
T Consensus 94 ~~~~l~v~nl~~~----------------~t~~-----------~l~~~F-~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 94 EDRKLFIGMISKK----------------CTEN-----------DIRVMF-SSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp GGSEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred CCCeEEEcCCCCc----------------CCHH-----------HHHHHH-HhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 5678888888642 3433 567778 79999999999988777889999999999
Q ss_pred HHHHHHHHHHhCCCEeC---CeeEEEEecc
Q psy12245 107 EEDAEKAVNDLNNRWFG---GRPVYAELSP 133 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~---GR~I~v~~~~ 133 (189)
.++|.+|++.|||..+. |++|.|.|++
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999998776 4999999874
No 129
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.35 E-value=2.6e-12 Score=94.95 Aligned_cols=78 Identities=23% Similarity=0.174 Sum_probs=64.5
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG-~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
|.....|.+.|+... ++++ ||++.| ++|| +|..+.|... ..+|++||+
T Consensus 25 p~~~~~l~VgnLp~~----------------~te~-----------dL~~~F-~~~G~~v~~v~i~~~---~~rGfaFV~ 73 (111)
T 2jvr_A 25 PAKRYRITMKNLPEG----------------CSWQ-----------DLKDLA-RENSLETTFSSVNTR---DFDGTGALE 73 (111)
T ss_dssp CCCCEEEEEECSSCC----------------CCHH-----------HHHHHH-HHHTCCCSEEECSSC---SSSCCEEEE
T ss_pred CCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HHhCCeeEEEEEEcC---CCCCEEEEE
Confidence 455678888888753 3333 566677 6999 9999999643 368999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
|++.++|++|++.|||..++||+|.|+++.
T Consensus 74 F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 74 FPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp ESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 999999999999999999999999999974
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.34 E-value=1.8e-12 Score=99.03 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCC---eeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 71 DVFVECEDKYGE---IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 71 DI~~e~e~kfG~---I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
||++.| ++||. |.+|.|+.+..+.++|++||+|++.++|.+|++ |||..++||.|.|.++....
T Consensus 60 dL~~~F-~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 60 DVQNFL-SDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp HHHHHT-TTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHH
T ss_pred HHHHHH-HHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHH
Confidence 677777 79999 899999987668899999999999999999999 99999999999999985443
No 131
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.34 E-value=1.4e-12 Score=88.08 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=53.7
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
||++.| ++||+|.++.++.+. ++..+|++||+|.+.++|.+|++ |||..++|++|.|.++
T Consensus 15 ~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 15 DVKHYF-EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHH-HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHH-HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 566677 799999999998875 56789999999999999999998 9999999999999864
No 132
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=2.9e-12 Score=101.61 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||+|++|.|..+.++..+|++||+|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 104 ~L~~~F-~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 104 DIQELF-AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp HHHHHH-HHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred HHHHHH-HhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 566677 699999999999876778899999999999999999999999999999999999854
No 133
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=3.4e-12 Score=95.19 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~ 138 (189)
||++.| ++||+|.+|.|.. .+|++||+|.+.++|.+|++.|||..++|+.|.|.++......
T Consensus 53 ~L~~~F-~~~G~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 53 LLRGAF-SPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp HHHHHH-STTCCCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred HHHHHH-HccCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 677778 7999999999974 4899999999999999999999999999999999998654443
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.34 E-value=4.9e-12 Score=91.86 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=62.0
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+.+|.|.|+-.. .++++ ||++.| ++||+|.+|.| .+|++||+|.+
T Consensus 26 ~~~~l~V~nl~~~---------------~~t~~-----------~l~~~F-~~~G~v~~v~i-------~~g~afV~f~~ 71 (110)
T 1wf1_A 26 INSRVFIGNLNTA---------------LVKKS-----------DVETIF-SKYGRVAGCSV-------HKGYAFVQYSN 71 (110)
T ss_dssp CSSEEEECSCCCS---------------SCCHH-----------HHHHHH-GGGSCCSEEEE-------ETTEEEEECSS
T ss_pred CCcEEEEeCCCcc---------------cCCHH-----------HHHHHH-HhCCCeEEEEE-------eCCEEEEEECC
Confidence 4579999998652 03433 566677 79999999999 37999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.++|.+|++.|||..++|+.|.|+++.
T Consensus 72 ~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 72 ERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 999999999999999999999999984
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.34 E-value=1.5e-11 Score=93.65 Aligned_cols=80 Identities=15% Similarity=0.262 Sum_probs=68.4
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
++++|++.|+... ++++ ||++.| ++||+|.+|.+..+. ++..+|++||+|.
T Consensus 2 ~~~~l~v~nlp~~----------------~~~~-----------~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 53 (168)
T 1b7f_A 2 SNTNLIVNYLPQD----------------MTDR-----------ELYALF-RAIGPINTCRIMRDYKTGYSYGYAFVDFT 53 (168)
T ss_dssp CCSEEEEECCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEES
T ss_pred CccEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeeEEEEEEeCCCCccceEEEEEEC
Confidence 5789999999753 3443 566677 799999999998764 5678999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||..++|++|.+.++..
T Consensus 54 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 54 SEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 99999999999999999999999999854
No 136
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.34 E-value=1.1e-11 Score=97.17 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=68.7
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEe
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKF 104 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F 104 (189)
..+.+|.|.|+... ++++ ||++.| ++||.|.+|.|..+. ++..+|++||+|
T Consensus 112 ~~~~~l~v~nl~~~----------------~~~~-----------~l~~~f-~~~G~v~~~~~~~~~~~~~~~g~afV~f 163 (198)
T 2yh0_A 112 DSAHKLFIGGLPNY----------------LNDD-----------QVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEY 163 (198)
T ss_dssp CCCCEEEEECCCTT----------------CCHH-----------HHHHHH-HTBSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHcCCccEEEEeecCCCCCcceEEEEEE
Confidence 45678888888652 3333 677788 699999999999875 578899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..++|++|.|.++..
T Consensus 164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 164 VDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp SSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999999999999999999843
No 137
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.6e-12 Score=88.06 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=64.1
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEE-EEeeCCCCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEM-NVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v-~i~~~~~~~~~G~vfV~F~ 105 (189)
.+.+|.+.|+-.. ++++ ||++.| ++||+|.++ .|+.+. ..|.+||+|.
T Consensus 14 ~~~~l~V~nlp~~----------------~t~~-----------~l~~~F-~~~G~v~~~~~i~~~~---~~~~afV~f~ 62 (96)
T 2e44_A 14 RIRKLQIRNIPPH----------------LQWE-----------VLDSLL-VQYGVVESCEQVNTDS---ETAVVNVTYS 62 (96)
T ss_dssp SCCCEEEEEECSS----------------SCHH-----------HHHHHH-HHHSCEEEEEEECCSS---SSEEEEEEES
T ss_pred CCCEEEEEcCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEeecCC---CCCEEEEEEC
Confidence 4789999999652 3443 566677 799999999 577653 3566999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
+.++|.+|++.|||..++|++|.|.++...
T Consensus 63 ~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 63 SKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 999999999999999999999999998553
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.3e-11 Score=87.88 Aligned_cols=74 Identities=22% Similarity=0.398 Sum_probs=62.8
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcC--CCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKY--GEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kf--G~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
..+++|.|.|+-.. ++++ ||++.| ++| |.|.+|.+. +|++||+
T Consensus 13 ~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~g~g~v~~~~~~-------~g~afV~ 57 (99)
T 2cpd_A 13 SSVKILYVRNLMLS----------------TSEE-----------MIEKEF-NNIKPGAVERVKKI-------RDYAFVH 57 (99)
T ss_dssp SCCCEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSTTCEEEEEEC-------SSEEEEE
T ss_pred CCcCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCcceEEEEEe-------CCeEEEE
Confidence 45789999999753 3443 566677 699 999999875 6899999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 58 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 58 FSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp ESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred eCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 9999999999999999999999999999843
No 139
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.1e-11 Score=93.90 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=56.4
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||+|.+|.|..+..+..+|++||+|.+.++|.+|++.|||..+.|++|.+.++..
T Consensus 16 ~l~~~f-~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 16 ILKQYF-QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp HHHHHH-GGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHH-HhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 566677 799999999999887677899999999999999999999999999999999999843
No 140
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.32 E-value=1.1e-11 Score=98.26 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||.|..|.|..+. ++..+|++||+|.+.++|.+|++.|||..|+|+.|.|.++..
T Consensus 141 ~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 141 DIKSVF-EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHH-TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHH-hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 677788 799999999999874 567899999999999999999999999999999999999843
No 141
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.32 E-value=6.4e-12 Score=87.84 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=65.5
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..+.+|.+.|+... ++++ ||++.| ++| .|.++.|+ ..+|++||+|.
T Consensus 3 ~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~-~v~~~~i~-----~~~g~afV~f~ 48 (88)
T 1wg1_A 3 SGSSGILVKNLPQD----------------SNCQ-----------EVHDLL-KDY-DLKYCYVD-----RNKRTAFVTLL 48 (88)
T ss_dssp CCCCCEEEESCCSS----------------CCHH-----------HHHHHT-CSS-CCCCEEEE-----GGGTEEEECCS
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-hhC-CeEEEEEe-----CCCcEEEEEEC
Confidence 35678999998652 3443 566777 799 99999996 35899999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccCccc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVTDF 137 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f 137 (189)
+.++|.+|++.|||..++|++|.|++++...+
T Consensus 49 ~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 49 NGEQAQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp CHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CHHHHHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 99999999999999999999999999976553
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.31 E-value=9.7e-12 Score=94.98 Aligned_cols=78 Identities=26% Similarity=0.299 Sum_probs=66.0
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+.+|.|.|+... ++++ ||++.| ++||.|.+|.|+.+ .+|++||+|
T Consensus 70 ~~~~~~l~V~nl~~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f 117 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNN----------------GNKT-----------ELERAF-GYYGPLRSVWVARN----PPGFAFVEF 117 (150)
T ss_dssp STTSCEEEEESCCSC----------------CSCH-----------HHHHHH-HHHSCEEEEEECSS----SCSEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhhCCEEEEEEeeC----CCcEEEEEE
Confidence 445689999998653 3444 466677 79999999999876 489999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|+..|||..++|++|.|+++..
T Consensus 118 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 118 EDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 999999999999999999999999999843
No 143
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.31 E-value=7.5e-12 Score=92.10 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+.+|+|.|+-.. ++++ ||++.| ++||+|..|.|..+ |++||+|.+
T Consensus 15 ~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~v~~~~i~~~------g~afV~f~~ 60 (115)
T 3beg_B 15 SENRVVVSGLPPS----------------GSWQ-----------DLKDHM-REAGDVCYADVYRD------GTGVVEFVR 60 (115)
T ss_dssp --CCEEEEECCSS----------------CCTT-----------HHHHHH-GGGSCEEEEEECTT------SEEEEEESS
T ss_pred CCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEecC------CEEEEEECC
Confidence 4578999998753 3343 456677 79999999999864 999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEe
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAEL 131 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~ 131 (189)
.++|++|++.|||..++|+.|.+.+
T Consensus 61 ~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 61 KEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp HHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred HHHHHHHHHHhCCCEECCcEeeeEE
Confidence 9999999999999999999944443
No 144
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.31 E-value=1.3e-12 Score=91.24 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=54.3
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||+|.++.|..+. ++..+|++||+|.+.+ |.+|+..|||..++|++|.|+++..
T Consensus 17 ~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 17 QVKELF-SQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp HHTTTH-HHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred HHHHHH-HhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 466667 799999999999774 4678999999999999 9999999999999999999999854
No 145
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=5.6e-12 Score=91.86 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=65.4
Q ss_pred CCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCe----eEEEEeeCCCCCee
Q psy12245 22 HNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEI----EEMNVCDNLGDHLV 97 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I----~~v~i~~~~~~~~~ 97 (189)
...+..+.+|.|.|+-.. ++++ ||++.| ++||.| ..+.+. ++..+
T Consensus 19 ~~~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~f-~~~G~v~~~~~~~~~~---~g~~~ 67 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPR----------------VTER-----------DLVSLF-ARFQEKKGPPIQFRMM---TGRMR 67 (115)
T ss_dssp CCCCSCCSEEEEECCCTT----------------CCHH-----------HHHHHT-HHHHHSSSSCCEEEEE---CSSSC
T ss_pred cCCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCccceEEEEEcC---CCccc
Confidence 344456789999998642 4443 566677 699999 455554 34679
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 98 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 98 G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 68 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 68 GQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp SEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 9999999999999999999999999999999999854
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.31 E-value=6.1e-12 Score=88.82 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=62.6
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..+++|.|.|+-.. ++++ ||++.| ++||.|..+ ...+..+|++||+|.
T Consensus 14 ~~~~~l~V~nL~~~----------------~t~~-----------~l~~~F-~~~g~v~~~----~~~~~~~g~afV~f~ 61 (96)
T 1fjc_A 14 RAARTLLAKNLSFN----------------ITED-----------ELKEVF-EDALEIRLV----SQDGKSKGIAYIEFK 61 (96)
T ss_dssp TGGGEEEEESCCSS----------------CCHH-----------HHHHHH-CSEEEECCE----EETTEEEEEEEEEES
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-hhCCcEEEe----CCCCCcceEEEEEEC
Confidence 35678999988642 4443 566677 799999877 223568999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||..++|++|.|.++..
T Consensus 62 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 62 SEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp SHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 99999999999999999999999999843
No 147
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=8.1e-12 Score=90.15 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=66.3
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCC-eeEEEEe-eCC-CCCeeeEEEE
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGE-IEEMNVC-DNL-GDHLVGNVYI 102 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~-I~~v~i~-~~~-~~~~~G~vfV 102 (189)
..+.+|.|.|+-.. ++++ ||++.| ++||. |.+|.|+ .+. ++..+|++||
T Consensus 6 ~~~~~l~V~nLp~~----------------~t~~-----------~l~~~f-~~~G~~v~~v~i~~~~~~~g~~~g~afV 57 (109)
T 2dis_A 6 SGNCRLFIGGIPKM----------------KKRE-----------EILEEI-AKVTEGVLDVIVYASAADKMKNRGFAFV 57 (109)
T ss_dssp CCSEEEEEECCCTT----------------SCHH-----------HHHHHH-HHHSTTEEEEECCSSSCTTTTTCCEEEE
T ss_pred cCCCEEEEeCCCCc----------------CCHH-----------HHHHHH-HHhcCCceEEEEEccCCCCCCcCcEEEE
Confidence 35678999998652 3443 566777 69999 9999998 443 3578999999
Q ss_pred EecCHHHHHHHHHHhC--CCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLN--NRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~Ln--Gr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|++.|| +..++|+.|.|.++..
T Consensus 58 ~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 58 EYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp EESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred EecCHHHHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence 9999999999999996 5899999999999843
No 148
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=4e-12 Score=86.05 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
||++.| ++||+|.++.++.+. ++..+|++||+|.+.++|.+|++.|| ..++|++|.|.++
T Consensus 16 ~l~~~F-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 16 GLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHH-TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHH-HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 466677 799999999999874 46789999999999999999999999 9999999999875
No 149
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=4.2e-11 Score=85.64 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=65.5
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEe
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKF 104 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F 104 (189)
..+.+|+|.|+-.. ++++ ||++.| ++||+|.+|.|+.+. ++..+|++||+|
T Consensus 13 ~~~~~l~v~nlp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f 64 (103)
T 2cqg_A 13 QKTSDLIVLGLPWK----------------TTEQ-----------DLKEYF-STFGEVLMVQVKKDLKTGHSKGFGFVRF 64 (103)
T ss_dssp CCCCCEEEESCCSS----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECSSSCSEEEEEEEEE
T ss_pred CCCCEEEEEcCCCc----------------CCHH-----------HHHHHH-HhcCCeEEEEEEecCCCCCccceEEEEE
Confidence 45688999997542 3443 566677 799999999999874 478899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++ +|..++|+.|.|.++..
T Consensus 65 ~~~~~a~~A~~--~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 65 TEYETQVKVMS--QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp SSHHHHHHHHH--SCEEETTEEEEEECCCT
T ss_pred CCHHHHHHHHH--cCCeeCCeEEEEEecCC
Confidence 99999999998 57899999999999843
No 150
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=4.3e-12 Score=90.55 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=54.3
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
||++.| ++||+|.+|.|..+ .+|++||+|.+.++|.+|++.|||..++|+.|.|+++...
T Consensus 16 ~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 16 ELERAF-SYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp HHHHHH-HHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred HHHHHH-HhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 566677 79999999999976 5899999999999999999999999999999999998543
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=94.03 Aligned_cols=87 Identities=20% Similarity=0.112 Sum_probs=70.9
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCC---eeEEEEeeCCCCCeeeE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGE---IEEMNVCDNLGDHLVGN 99 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~---I~~v~i~~~~~~~~~G~ 99 (189)
..+....+|.|.|+-.. +|++ ||++.| ++||. |.+|.|+.+..+..+|+
T Consensus 6 ~~~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~g~~~~v~~v~i~~~~~g~~~G~ 57 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWS----------------CTME-----------DVLNFF-SDCRIRNGENGIHFLLNRDGKRRGD 57 (107)
T ss_dssp CCCSSCCEEEEECCCSS----------------CCSH-----------HHHHHT-TTSCBTTTTTTEECCCCTTSTTCSE
T ss_pred CCCCCccEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCcCCcceEEEEECCCCCEeeE
Confidence 34556789999999763 3444 455666 68887 99999998766788999
Q ss_pred EEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy12245 100 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138 (189)
Q Consensus 100 vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~ 138 (189)
+||+|.+.++|.+|++ |||..++||.|.|.++......
T Consensus 58 afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~~~ 95 (107)
T 2lmi_A 58 ALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNEDVD 95 (107)
T ss_dssp EEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHHHH
T ss_pred EEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHHHH
Confidence 9999999999999999 9999999999999998654433
No 152
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.30 E-value=1.1e-11 Score=90.33 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=63.8
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
+..+++|.|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+
T Consensus 22 ~~~~~~lfV~nLp~~----------------~te~-----------~L~~~F-~~~G~i~~v~i~~~~~tg~~kg~afV~ 73 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQ----------------TTQE-----------GLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVT 73 (109)
T ss_dssp ----CCEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEEECCCTTTCCCTTCEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HccCCeEEEEEEECCCCCCcCcEEEEE
Confidence 445678888887542 3443 566777 799999999999874 46789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
|.+.++|.+|++.+ |..++|+.|.|.++.
T Consensus 74 f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 74 FMDQAGVDKVLAQS-RHELDSKTIDPKVAF 102 (109)
T ss_dssp ESSHHHHHHHHHSS-CEEETTEEEEEEECC
T ss_pred ECCHHHHHHHHHHC-CCcCCCEEEEEEEcc
Confidence 99999999999976 599999999999974
No 153
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.30 E-value=2.8e-12 Score=97.22 Aligned_cols=64 Identities=17% Similarity=0.403 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+||++.| ++||+|.+|.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|+++..
T Consensus 62 ~~L~~~F-~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 62 DTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp HHHHHHH-GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred HHHHHHH-HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3677788 799999999998764 467899999999999999999999999999999999999844
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.29 E-value=2.1e-11 Score=92.43 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=54.4
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCee--EEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRP--VYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~--I~v~~~ 132 (189)
||++.| ++||.|..+.+..+. ++..+|++||+|.+.++|.+|++.|||+.++|+. |.+.|+
T Consensus 104 ~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 104 ELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHH-HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 677788 799999999998764 5678999999999999999999999999999975 888774
No 155
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=7e-12 Score=89.00 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=62.7
Q ss_pred CCCCCeEEecCCCC-CccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYI-NPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
...+.+|.|.|+-. . ++++ ||++.| ++||+|.+|.|. +|++||+
T Consensus 7 ~~~~~~l~V~nlp~~~----------------~t~~-----------~l~~~F-~~~G~v~~v~i~-------~g~afV~ 51 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKN----------------VSKE-----------DLFRIF-SPYGHIMQINIK-------NAFGFIQ 51 (96)
T ss_dssp --CCEEEEEESSTTSC----------------CCHH-----------HHHHHH-TTTCCCCEEEEE-------TTEEEEE
T ss_pred CCCCCEEEEeCCCccc----------------CCHH-----------HHHHHH-HhcCCEEEEEEe-------CCEEEEE
Confidence 34578999999874 3 3333 566777 799999999995 6999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.|||..+.|++|.|+++..
T Consensus 52 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 52 FDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred ECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 9999999999999999999999999999843
No 156
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.29 E-value=1.2e-11 Score=99.92 Aligned_cols=76 Identities=18% Similarity=0.306 Sum_probs=64.7
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+.||++.|+-.. .++++ +|++.| ++||.|.+|+|..+ .+|++||+|.+
T Consensus 3 ~~~~l~V~nL~~~---------------~~~~~-----------~L~~~F-~~~G~v~~v~i~~~----~~g~afV~f~~ 51 (205)
T 3tyt_A 3 DSPVLMVYGLDQS---------------KMNCD-----------RVFNVF-CLYGNVEKVKFMKS----KPGAAMVEMAD 51 (205)
T ss_dssp CCSEEEEECCCTT---------------TCCHH-----------HHHHHH-TTTSCEEEEEECTT----STTCEEEEESS
T ss_pred CCCEEEEeCCCcc---------------cCCHH-----------HHHHHH-HhcCCeEEEEEecC----CCCEEEEEECC
Confidence 4689999998721 24443 566777 79999999999875 37999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.++|.+|++.|||..+.|++|.|.++.
T Consensus 52 ~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 52 GYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 999999999999999999999999984
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.28 E-value=2.2e-11 Score=96.11 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=53.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEeccCc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPVT 135 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~G--R~I~v~~~~~~ 135 (189)
+|++.| ++||+|++|.|... ..+|++||+|.+.++|.+|++.|||+.+.| +.|.|+|+...
T Consensus 62 ~L~~~F-s~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 62 VLHQIF-SKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp HHHHHH-HHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred HHHHHH-HhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 566677 79999999999754 257999999999999999999999999965 99999998543
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.28 E-value=2.2e-11 Score=97.96 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=55.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||.|+++.|+.+. +..+|++||+|.+.++|.+|++.|||..++||+|.|.++..
T Consensus 119 ~l~~~F-~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 119 ALYDTF-SAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHH-GGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHH-hhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 567778 799999999998764 34699999999999999999999999999999999999854
No 159
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=2.8e-11 Score=100.58 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCC-ChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNV-TDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
..+.+|++.|+... + ++ +||++.| ++||.|.++.|..+..+.++|++||+|
T Consensus 182 ~~~~~l~v~nlp~~----------------~~~~-----------~~l~~~f-~~~G~i~~v~i~~~~~g~~~g~afV~f 233 (284)
T 3smz_A 182 LHSRCLCVDRLPPG----------------FNDV-----------DALCRAL-SAVHSPTFCQLACGQDGQLKGFAVLEY 233 (284)
T ss_dssp TSCSEEEEECCCTT----------------CCCH-----------HHHHHHT-CSSSCCSEEEEEECSSCCEEEEEEEEC
T ss_pred CCccEEEEecCCcc----------------cCCH-----------HHHHHHh-hCCCCeEEEEEEECCCCCcccEEEEEe
Confidence 35678999998652 2 22 3677788 799999999999887788899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccCccch
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFR 138 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~ 138 (189)
.+.++|.+|+..|||+.|+|++|.|.|+....-.
T Consensus 234 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 234 ETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred CCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 9999999999999999999999999999654443
No 160
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=95.79 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=66.9
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeE--EEEeeCC-CCCeeeEEEEE
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEE--MNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~--v~i~~~~-~~~~~G~vfV~ 103 (189)
.+.+|.|.|+-.. ++++ ||++.| ++||.|.. |.|+.+. ++..+|++||+
T Consensus 22 ~~~~lfV~nL~~~----------------~te~-----------~L~~~F-~~~G~v~~~~v~i~~d~~tg~~rG~aFV~ 73 (131)
T 2m2b_A 22 ANDTIILRNLNPH----------------STMD-----------SILGAL-APYAVLSSSNVRVIKDKQTQLNRGFAFIQ 73 (131)
T ss_dssp CCCEEEECSCCTT----------------CCSH-----------HHHHHH-GGGCCCCTTTEECCBCSSSSSBCSCEEEE
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCcceeeEEEEEcCCCCCcceEEEEE
Confidence 4678999998652 3444 566677 79999977 9998876 67889999999
Q ss_pred ecCHHHHHHHHHHhCCC----EeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNR----WFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr----~f~GR~I~v~~~~~ 134 (189)
|.+. +|.+|+..|||. .++||.|.|.++..
T Consensus 74 f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 74 LSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp CCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred ECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 9999 999999999999 99999999999843
No 161
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2e-11 Score=89.26 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=54.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||++.| ++||+|.+|.|..+. ++..+|++||+|.+.++|.+|++. ||..++|+.|.|.++.
T Consensus 43 ~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 43 SLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred HHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 566677 799999999999874 467899999999999999999998 9999999999999984
No 162
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.2e-11 Score=86.89 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCC-eeEEEEeeCCCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGE-IEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~-I~~v~i~~~~~~~~~G~vfV~ 103 (189)
+..+++|.|.|+-.. ++++ ||++.| ++||. |..+.+. .+|++||+
T Consensus 5 ~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~vv~~~~~~------~~g~afV~ 50 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPA----------------VTAD-----------DLRQLF-GDRKLPLAGQVLL------KSGYAFVD 50 (93)
T ss_dssp CCCCCCEEEECCCTT----------------CCHH-----------HHHHHH-HHTTCCCSSCEEE------ETTEEEEC
T ss_pred CCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HHcCCceEEEEEc------CCCEEEEE
Confidence 456789999999753 3443 566677 69999 6666664 37999999
Q ss_pred ecCHHHHHHHHHHhCC-CEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNN-RWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnG-r~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++.||| ..++|++|.|+++..
T Consensus 51 f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 51 YPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred ECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 9999999999999999 999999999999843
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.26 E-value=5.5e-11 Score=95.60 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=67.9
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+.||.|.|+-.. +|++ ||++.| ++||+|++|.|+.+. ++..+|++||+|.
T Consensus 14 p~~tlfVgnLp~~----------------~te~-----------~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~ 65 (213)
T 4f02_A 14 PMASLYVGDLHPD----------------VTEA-----------MLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQ 65 (213)
T ss_dssp -CCEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhhCCEEEEEEecccCCCCccccccceeC
Confidence 4579999998652 4444 566677 799999999999864 4788999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||..+.|+.|.+.+...
T Consensus 66 ~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 66 QPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 99999999999999999999999998754
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=5e-11 Score=89.87 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeE-EEEEecCHHHHHHHHHHhCCCEeCC--eeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVNDLNNRWFGG--RPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~-vfV~F~~~e~A~~A~~~LnGr~f~G--R~I~v~~~~~ 134 (189)
+|++.| ++||.|++|+|... .|+ +||+|.+.++|.+|++.|||..+.| +.|.|+|+..
T Consensus 41 ~L~~~F-s~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 41 VLYTVC-NPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp HHHHHH-TTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred HHHHHH-HhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 567778 79999999999764 386 9999999999999999999999988 6999999843
No 165
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.25 E-value=2e-11 Score=100.42 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=57.4
Q ss_pred HHHHHHhhcCC--CeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYG--EIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG--~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++|| +|++|.|+.+. ++..+|++||+|.+.++|.+|++.|||..|+||.|.|.++..
T Consensus 84 ~L~~~F-~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 84 DLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp HHHHHH-HTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred HHHHHH-HHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 566777 7999 99999999874 678999999999999999999999999999999999999854
No 166
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.24 E-value=3.2e-11 Score=91.35 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=64.2
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeE--------EEEeeCCCCCe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEE--------MNVCDNLGDHL 96 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~--------v~i~~~~~~~~ 96 (189)
...+.+|+|.|+-.. ++++ ||++.| ++||.|.. |.+.. ++..
T Consensus 42 ~~~~~~l~V~nLp~~----------------~te~-----------~L~~~F-~~~G~i~~~~~~~~~di~~~~--~g~~ 91 (143)
T 3egn_A 42 GEPNCRIYVKNLAKH----------------VQEK-----------DLKYIF-GRYVDFSSETQRIMFDIRLMK--EGRM 91 (143)
T ss_dssp CSCCSEEEEEEECTT----------------CCHH-----------HHHHHH-GGGCCTTCHHHHHHCEEEEEE--ETTT
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCcccccccceeeEEecc--CCCc
Confidence 446789999999752 4444 566677 79999876 44433 3467
Q ss_pred eeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 97 VGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 97 ~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+|++||+|.+.++|.+|+..|||..++|++|.|.++.
T Consensus 92 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 92 KGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 128 (143)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 9999999999999999999999999999999999984
No 167
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=92.46 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=69.4
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCe----eEEEEeeCCCCCeeeEEE
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEI----EEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I----~~v~i~~~~~~~~~G~vf 101 (189)
..+.+|.|.||... +|++ ||++.| ++||+| .+|.|+.+.++.++|++|
T Consensus 21 ~~~~~v~V~nLp~~----------------~te~-----------dl~~~F-~~~g~v~g~v~~v~i~~d~~gr~~G~aF 72 (123)
T 2dha_A 21 ENQVIVRMRGLPFT----------------ATAE-----------EVVAFF-GQHCPITGGKEGILFVTYPDGRPTGDAF 72 (123)
T ss_dssp CSCCEEEECSCCTT----------------CCHH-----------HHHHHH-HTTSCCTTGGGGEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhhCCccCCcceEEEEECCCCCEeeEEE
Confidence 34678999998753 3444 566677 699986 699998877778999999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCccchhh
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~f~~~ 140 (189)
|+|.+.++|.+|++. ||..++||.|.|..+....+...
T Consensus 73 V~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~~ 110 (123)
T 2dha_A 73 VLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQV 110 (123)
T ss_dssp ECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHHH
T ss_pred EEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHHH
Confidence 999999999999996 99999999999988765554443
No 168
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=6.6e-11 Score=84.33 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=63.8
Q ss_pred CCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeC-CCCCeeeEEE
Q psy12245 23 NKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVY 101 (189)
Q Consensus 23 ~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~-~~~~~~G~vf 101 (189)
..+..+++|+|.|+-.. ++++ ||++.| ++|+ .|.++.+ .++..+|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~~---~~~~~~~~~~~~~~g~af 58 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSED----------------TTEE-----------TLKESF-DGSV---RARIVTDRETGSSKGFGF 58 (102)
T ss_dssp SSSCCCSSEEEECCCTT----------------CCHH-----------HHHHTS-TTCS---EEEEEECSSSCSEEEEEE
T ss_pred CCCCCCCEEEEeCCCCc----------------cCHH-----------HHHHHh-cCCe---EEEEEecCCCCCcCcEEE
Confidence 34557789999998753 4444 455566 5664 5666655 3567899999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|+|.+.++|.+|++.|||..++|+.|.|+++..
T Consensus 59 V~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 59 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp EECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 999999999999999999999999999999843
No 169
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.23 E-value=2.3e-11 Score=86.87 Aligned_cols=76 Identities=14% Similarity=0.314 Sum_probs=65.2
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR 106 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~ 106 (189)
.+++|.+.|+-.. ++++ ||++.| ++||.|.++.|+.+.++..+|++||+|.+
T Consensus 8 ~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 59 (102)
T 2xs2_A 8 MPNTVFVGGIDVR----------------MDET-----------EIRSFF-ARYGSVKEVKIITDRTGVSKGYGFVSFYN 59 (102)
T ss_dssp EEEEEEEECCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCeEEEEEEECCCCCccceEEEEECC
Confidence 4678999998652 3443 566677 79999999999987777889999999999
Q ss_pred HHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 107 EEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 107 ~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.++|.+|++ ||..++|+.|.|.++
T Consensus 60 ~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 60 DVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp CCCHHHHTT--CCCEETTEECEEEEE
T ss_pred HHHHHHHHh--CCCeECCEEEEEEEC
Confidence 999999998 999999999999887
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.23 E-value=6.2e-11 Score=98.36 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=69.1
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..+++|+|.|+-.. ++++++ .+.|.+.| ++||.|.+|.|... +..+|++||+|.
T Consensus 7 ~~~~~l~V~nlp~~----------------~~~~~l-------~~~L~~~F-~~~G~i~~v~~~~~--~~~~g~afV~f~ 60 (282)
T 3pgw_A 7 RPNHTIYINNLNEK----------------IKKDEL-------KKSLYAIF-SQFGQILDILVSRS--LKMRGQAFVIFK 60 (282)
T ss_pred CCCCEEEEeCCCCC----------------CCHHHH-------HHHHHHHH-hccCCeEEEEEcCC--CCcceEEEEEEC
Confidence 45789999999752 444433 33566788 79999999999873 467899999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||..+.|+.|.|.++..
T Consensus 61 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred CHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 99999999999999999999999999843
No 171
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.23 E-value=3.8e-11 Score=100.09 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=67.2
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCC--CCeeeEEEEE
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG--DHLVGNVYIK 103 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~--~~~~G~vfV~ 103 (189)
..+.+|.|.|+... .++++ ||++.| ++||.|..|.|+.+.. +..+|++||+
T Consensus 208 ~~~~~l~v~nlp~~---------------~~t~~-----------~l~~~F-~~~G~v~~v~i~~~~~~tg~~~g~afV~ 260 (292)
T 2ghp_A 208 LEGREIMIRNLSTE---------------LLDEN-----------LLRESF-EGFGSIEKINIPAGQKEHSFNNCCAFMV 260 (292)
T ss_dssp CTTTEEEEEEECTT---------------TCCHH-----------HHHHHH-GGGSCEEEEECCSCCC---CCCEEEEEE
T ss_pred CCCceEEEECCCcc---------------cCCHH-----------HHHHHH-hccCCeeEEEEEecCCcCCCCceEEEEE
Confidence 35678999987542 03333 677788 7999999999998765 7889999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|+ .|||++++|++|.|.|+..
T Consensus 261 F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 261 FENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp ESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred eCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 99999999999 9999999999999999843
No 172
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.22 E-value=2e-12 Score=92.28 Aligned_cols=80 Identities=21% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..+.+|.|.|+-.. ++++ ||++.| ++||.|....+....++..+|++||+|.
T Consensus 15 ~~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~G~v~~~~~~~~~~g~~~g~afV~f~ 66 (101)
T 1fj7_A 15 TTPFNLFIGNLNPN----------------KSVA-----------ELKVAI-SELFAKNDLAVVDVRTGTNRKFGYVDFE 66 (101)
T ss_dssp SCSEEEEEECCCTT----------------SCHH-----------HHHHHH-HHHHHHHTCCCCEEEEETTTTEEEEEES
T ss_pred CCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCcceEEEecCCCCCcCcEEEEEEC
Confidence 35679999998652 4443 566677 6999988832222233467899999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++ |||..++|+.|.|.++..
T Consensus 67 ~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 67 SAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp SHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 9999999999 999999999999999843
No 173
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.22 E-value=5.2e-12 Score=96.91 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
+||++.| ++|| |++|.|+.+..+.++|++||+|++.++|++|+ .|||..++||.|.|..+....
T Consensus 61 ~dL~~~F-~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 61 NDIYNFF-SPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHHHHHH-CSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HHHHHHH-HhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 4677788 7999 77999998766788999999999999999999 799999999999999885543
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.22 E-value=4.2e-11 Score=82.76 Aligned_cols=71 Identities=13% Similarity=0.295 Sum_probs=59.5
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcC----C-------CeeEEEEeeCCCCC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKY----G-------EIEEMNVCDNLGDH 95 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kf----G-------~I~~v~i~~~~~~~ 95 (189)
.+++|.+.|+-.. ++++ ||++.| ++| | +|.++.+..+
T Consensus 5 ~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~~~~~g~~~~~~~~v~~~~~~~~---- 52 (87)
T 2hzc_A 5 SARRLYVGNIPFG----------------ITEE-----------AMMDFF-NAQMRLGGLTQAPGNPVLAVQINQD---- 52 (87)
T ss_dssp GGGEEEEESCCTT----------------CCHH-----------HHHHHH-HHHHHHTTCCSSSSCSEEEEEECSS----
T ss_pred CCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HHHhhhcccccCCCCcceEEEecCC----
Confidence 5689999998752 3444 455566 588 8 9999999865
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEe
Q psy12245 96 LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAEL 131 (189)
Q Consensus 96 ~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~ 131 (189)
+|++||+|.+.++|.+|+ .|||..++|+.|.|+.
T Consensus 53 -kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 53 -KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp -SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred -CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 799999999999999999 9999999999999863
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.22 E-value=1e-10 Score=91.39 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=55.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||.|..|.|..+. ++..+|++||+|.+.++|.+|+.. +|..++|+.|.|.++..
T Consensus 120 ~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 120 HLRDYF-EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp HHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred HHHHHH-hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 677778 799999999999874 568899999999999999999986 89999999999999843
No 176
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=5.2e-11 Score=91.73 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=63.9
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+.+|.+.|+... ++++ ||++.| ++||.|..+ ...+..+|++||+|
T Consensus 96 ~~~~~~l~v~nlp~~----------------~t~~-----------~l~~~F-~~~g~v~~~----~~~~~~~g~afV~f 143 (175)
T 1fje_B 96 VRAARTLLAKNLSFN----------------ITED-----------ELKEVF-EDALEIRLV----SQDGKSKGIAYIEF 143 (175)
T ss_dssp TGGGGEEEEESCCSS----------------CCHH-----------HHHHHC-TTCSEEEEE----CSSSSCCSEEEEEC
T ss_pred cccCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCeEEEe----cCCCCCceEEEEEE
Confidence 345689999998652 3333 677788 699998877 33457899999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||+.++|++|.|+|+..
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 144 KSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp SSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 999999999999999999999999999843
No 177
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.21 E-value=1.1e-11 Score=83.55 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=52.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
||++.| ++||+|.++.++.+. ++..+|++||+|.+.++|.+|++ ++|..++|+.|.+.++
T Consensus 15 ~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 15 KIREYF-GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHH-HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHHHH-HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 566677 699999999998764 46789999999999999999998 5999999999998764
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.21 E-value=2.5e-11 Score=92.51 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
||++.| ++||.|.++.|..+. ++.++|++||+|.+.++|.+|++ |||..++|++|.|.++.
T Consensus 103 ~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 103 EFEEFF-SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHHHHH-HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred HHHHHH-HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 567778 799999999998764 56789999999999999999998 99999999999999984
No 179
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-12 Score=95.20 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCCeeE--------EEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 71 DVFVECEDKYGEIEE--------MNVCDNL-GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG~I~~--------v~i~~~~-~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
||++.| ++||.|.. |.|+.+. ++..+|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 23 ~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 23 SVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 567777 79999999 8888763 467899999999999999999999999999999999999843
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.19 E-value=1.1e-10 Score=93.66 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
+|++.| ++||+|.+|.|+.+..+..+|++||+|++.++|.+|+..++ ..|+||+|.|.+.
T Consensus 125 ~L~~~F-~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 125 DIKEWL-EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp HHHHHH-TTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred HHHHHH-hcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 566777 79999999999988777889999999999999999998665 5999999999875
No 181
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-10 Score=82.52 Aligned_cols=78 Identities=8% Similarity=0.099 Sum_probs=60.9
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
+..+++|.+.|+-.. ++++ ||++.| ++||+|.+|.+... ++ + ++||+|
T Consensus 5 ~~~~~~l~V~nl~~~----------------~t~~-----------~l~~~F-~~~G~v~~v~~~~~-~g--~-~afV~f 52 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRG----------------VDSA-----------QLSEYF-LAFGPVASVVMDKD-KG--V-FAIVEM 52 (94)
T ss_dssp CTTCCEEEEECCCTT----------------CCHH-----------HHHHHG-GGTSCEEEEEECSS-SC--C-EEEEEE
T ss_pred cCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCeEEEEEcCC-CC--c-EEEEEE
Confidence 445689999998652 3443 566777 79999999833332 22 2 999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
.+.++|.+|+. |||..++|+.|.|.++...
T Consensus 53 ~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 53 GDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp SSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 99999999999 9999999999999877443
No 182
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.19 E-value=1.5e-10 Score=90.44 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~ 103 (189)
|..+++|+|.|+... ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+
T Consensus 10 ~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~ 61 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFE----------------TTDE-----------SLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVT 61 (196)
T ss_dssp CGGGGEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEEEcCCCCCccceEEEE
Confidence 456789999999753 3444 566677 799999999999874 46789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|++. +|..++|+.|.+.++..
T Consensus 62 f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 62 YATVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp ESSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred eCCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 9999999999985 99999999999999743
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.18 E-value=1.2e-10 Score=96.53 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~-GR~I~v~~~~ 133 (189)
||++.| ++||.|.+|.|..+. +|++||+|.+.++|.+|++.|||..++ |+.|.|+|+.
T Consensus 223 ~l~~~F-~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 223 MLSMLF-NQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHH-HhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 677788 699999999999653 699999999999999999999999999 9999999973
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.18 E-value=2.5e-11 Score=91.73 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=66.5
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCee--EEEEeeCCCCCeeeEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIE--EMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~--~v~i~~~~~~~~~G~vf 101 (189)
.|..+.+|.|.||... +|++ ||++.| ++| .|. +|.|+.+..+.++|++|
T Consensus 38 ~~~~~~~lfVgnLp~~----------------~te~-----------dL~~~F-~~~-~i~~~~v~i~~d~~GrsrGfaF 88 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFG----------------CTKE-----------EIVQFF-SGL-EIVPNGITLPVDPEGKITGEAF 88 (126)
T ss_dssp CSSSCCEEEEECCCTT----------------CCHH-----------HHHHHT-TTS-CEEEEEEECCCCSSSSSCSEEE
T ss_pred CCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-hcC-CceeeEEEEEECCCCCCceEEE
Confidence 4456788999988763 3443 566777 799 677 99999876688899999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
|+|++.++|.+|++ ++|..++||.|.|..+...
T Consensus 89 V~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 89 VQFASQELAEKALG-KHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp EEESSTTHHHHHHT-TTTCCBTTBCCCCEEECHH
T ss_pred EEECCHHHHHHHHH-HCCCEECCEEEEEEECCHH
Confidence 99999999999998 5889999999999887543
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.18 E-value=8.3e-11 Score=93.20 Aligned_cols=81 Identities=14% Similarity=0.299 Sum_probs=65.6
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+++|+|.|+-.. ++++ ||++.| ++||+|.+|.|..+. ++..+|++||+|.
T Consensus 27 ~~~~l~V~nLp~~----------------~t~~-----------~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 78 (216)
T 2qfj_A 27 IMSRVYVGSIYYE----------------LGED-----------TIRQAF-APFGPIKSIDMSWDSVTMKHKGFAFVEYE 78 (216)
T ss_dssp HHTEEEEECCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEECCC-CC-CCCSEEEEEES
T ss_pred cCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEeecCCCCccCceEEEEeC
Confidence 3578999988752 3443 566677 799999999998764 5678999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccCc
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPVT 135 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~ 135 (189)
+.++|.+|++.|||..++|+.|.|.+....
T Consensus 79 ~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 79 VPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp SHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred CHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 999999999999999999999999887543
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.14 E-value=1e-10 Score=92.04 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=63.9
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG-~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
.+.+|.|.|+... +++ +||++.| ++|| +|.+|.|..+. +|++||+|.
T Consensus 119 ~~~~l~v~nl~~~----------------~~~-----------~~l~~~f-~~~G~~v~~v~i~~~~----~g~afV~f~ 166 (198)
T 1qm9_A 119 PSATLHLSNIPPS----------------VSE-----------EDLKVLF-SSNGGVVKGFKFFQKD----RKMALIQMG 166 (198)
T ss_dssp CCCEEEECCCCTT----------------CCH-----------HHHHHHH-HHTTSCCCEEEESSTT----SSCEEEECS
T ss_pred CccEEEEeCCCCC----------------CCH-----------HHHHHHH-HHcCCCceEEEEEeCC----CcEEEEEeC
Confidence 3688889888642 333 3677788 6999 99999996642 799999999
Q ss_pred CHHHHHHHHHHhCCCEeC-CeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFG-GRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~-GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||+.++ |++|.|.|+..
T Consensus 167 ~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 167 SVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp SHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 999999999999999999 99999999743
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.13 E-value=1.5e-10 Score=93.95 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=64.9
Q ss_pred CCCCeEEecCCCC-CccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 26 TFSQTILLLNLYI-NPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 26 ~~S~~v~l~Nm~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
..+++|+|.|+-. . ++++ ||++.| ++||.|.+|.|..+. +|++||+|
T Consensus 32 ~~~~~l~V~nLp~~~----------------~te~-----------~L~~~F-~~~G~i~~v~i~~~~----~g~afV~F 79 (229)
T 2adc_A 32 AGNSVLLVSNLNPER----------------VTPQ-----------SLFILF-GVYGDVQRVKILFNK----KENALVQM 79 (229)
T ss_dssp CCCSEEEEESCCTTT----------------CCHH-----------HHHHHH-HHHTCEEEEEECCTT----SCCEEEEE
T ss_pred CCCCEEEEeCCCccc----------------CCHH-----------HHHHHH-HhCCCeEEEEEEECC----CCEEEEEE
Confidence 3567888888865 2 3333 566677 699999999999873 79999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
.+.++|.+|++.|||..+.|++|.|.++..
T Consensus 80 ~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 80 ADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp SCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 999999999999999999999999999853
No 188
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.12 E-value=3.2e-10 Score=79.83 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEE
Q psy12245 22 HNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 22 H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vf 101 (189)
+..+..+.+|.+.|+-.. +|++ ||++.| ++||+|.+|.|+.+ ++|++|
T Consensus 5 ~~~~~~~~~l~V~~Lp~~----------------~te~-----------~L~~~F-~~~G~i~~v~i~~~----srGfaF 52 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTED----------------MTAE-----------ELQQFF-CQYGEVVDVFIPKP----FRAFAF 52 (89)
T ss_dssp ------CCEEEEESCCTT----------------CCHH-----------HHHHHH-TTTSCEEEEECCSS----CCSEEE
T ss_pred CCCCCCCCEEEEeCCCCC----------------CCHH-----------HHHHHH-hccCCEEEEEEeeC----CCCEEE
Confidence 455677889999998763 4444 566777 79999999999975 589999
Q ss_pred EEecCHHHHHHHHHHhCCCEe--CCeeEEEEecc
Q psy12245 102 IKFRREEDAEKAVNDLNNRWF--GGRPVYAELSP 133 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f--~GR~I~v~~~~ 133 (189)
|+|++.++|. .|+|..+ .|+.|.+.++.
T Consensus 53 V~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 53 VTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp EEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred EEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 9999999998 3677766 49999999874
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.12 E-value=9.7e-10 Score=91.19 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=67.8
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+.+|.+.|+... ++++ ||++.| ++||.|.++.|..+. ++..+|++||+|.
T Consensus 94 ~~~~l~v~nlp~~----------------~t~~-----------~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 145 (284)
T 3smz_A 94 TDALLCVANLPPS----------------LTQQ-----------QFEELV-RPFGSLERCFLVYSERTGQSKGYGFAEYM 145 (284)
T ss_dssp CSCEEEEESCCTT----------------CCHH-----------HHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCEEEEcCCCCc----------------CCHH-----------HHHHHH-HhcCCeeEEEEEeeCCCCccceEEEEEEC
Confidence 4578889888642 3433 567778 799999999998764 5788999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|+..|||..++|++|.+.++..
T Consensus 146 ~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 146 KKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 99999999999999999999999999854
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.12 E-value=3.6e-10 Score=86.36 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=64.6
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCC---CeeeEEEEE
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGD---HLVGNVYIK 103 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~---~~~G~vfV~ 103 (189)
.+++|.+.|+... ++++ ||++.| ++||+|.+|.|..+..+ ..+|++||+
T Consensus 2 ~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~i~~v~i~~~~~~~~~~~~g~afV~ 53 (175)
T 3nmr_A 2 DAIKMFVGQVPRT----------------WSEK-----------DLRELF-EQYGAVYEINVLRDRSQNPPQSKGCCFVT 53 (175)
T ss_dssp CCEEEEEESCCTT----------------CCHH-----------HHHHHH-HTTSCEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CceEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEEecCCCCCCCcceEEEEE
Confidence 4678999998752 4444 566677 69999999999976543 789999999
Q ss_pred ecCHHHHHHHHHHhCCCEeC---CeeEEEEecc
Q psy12245 104 FRREEDAEKAVNDLNNRWFG---GRPVYAELSP 133 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~---GR~I~v~~~~ 133 (189)
|.+.++|.+|++.|||..+. ++++.+.+..
T Consensus 54 f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 54 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred ECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 99999999999999998876 6778887764
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.3e-10 Score=86.43 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEecC----HHH----HHHHHH--HhCCCEeCCeeEEEEeccCcc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFRR----EED----AEKAVN--DLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~~----~e~----A~~A~~--~LnGr~f~GR~I~v~~~~~~~ 136 (189)
+|++-| ++||+|.++.+..+. ++.++|++||+|.+ +++ |.+|+. .|||..++||+|.|.+-+...
T Consensus 22 ~Lk~~F-s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 22 SIKNYF-KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHSI 97 (136)
T ss_dssp HHHHHH-HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTTH
T ss_pred HHHHHH-HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcccH
Confidence 456666 799999999999775 57999999999996 333 899999 899999999999999976543
No 192
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.8e-10 Score=83.62 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+||++.| ++||+|.+|.|+. ..+|++||+|++.++|.+|++.++| +.|++|.|.|+..
T Consensus 32 ~~L~~~F-~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 32 DVLLRLL-QKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp HHHHHHH-HTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred HHHHHHH-HhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 3677778 7999999999984 4689999999999999999998766 6899999999743
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.10 E-value=3.4e-10 Score=91.86 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=52.8
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeC-CeeEEEEeccC
Q psy12245 71 DVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG-GRPVYAELSPV 134 (189)
Q Consensus 71 DI~~e~e~kfG-~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~-GR~I~v~~~~~ 134 (189)
||++.| ++|| +|..|.|... .+|++||+|.+.++|.+|++.|||..++ |++|.|.|+..
T Consensus 167 ~l~~~f-~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 167 DLKVLF-SSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHH-HTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHH-HHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 677788 7999 9999999653 2799999999999999999999999999 99999999743
No 194
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.08 E-value=1e-09 Score=95.75 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCCCCeEEecCC-CCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 25 PTFSQTILLLNL-YINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 25 P~~S~~v~l~Nm-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
...|++|++.|. +.. .+|++ ||++.| ++||+|.+|.++. .+|++||+
T Consensus 15 ~~ps~~l~VgN~gl~~---------------~~te~-----------~L~~~F-~~~G~V~~v~~~~-----~kgfaFV~ 62 (345)
T 3tht_A 15 SYATQSLVVANGGLGN---------------GVSRN-----------QLLPVL-EKCGLVDALLMPP-----NKPYSFAR 62 (345)
T ss_dssp SSCCSEEEEETCSGGG---------------TCCHH-----------HHHHHH-HTTSCEEEEECCT-----TCSEEEEE
T ss_pred CCCCCEEEEEcCCCCC---------------CCCHH-----------HHHHHH-HhcCCeEEEEEeC-----CCCEEEEE
Confidence 446789999986 221 23444 667778 7999999998875 37999999
Q ss_pred ecCHHHHHHHHHHhCCCEe---CCe--eEEEEeccCccchhhhhcccccCCCCCCCCCceeeecCCCHHHHHHHHhcccc
Q psy12245 104 FRREEDAEKAVNDLNNRWF---GGR--PVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRKR 178 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f---~GR--~I~v~~~~~~~f~~~~c~~~~~~~c~rg~~Cn~~h~~~~~~~l~~~l~~~~~~ 178 (189)
|++.++|++|++.|||..+ .|+ +|++.|+....+.+ +....-+.| =+++.--++.+-...|.....|
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~~~~-----~~~~~lp~G---l~~~p~fis~~Ee~~Ll~~i~w 134 (345)
T 3tht_A 63 YRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKE-----LRPQALPPG---LMVVEEIISSEEEKMLLESVDW 134 (345)
T ss_dssp ESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEEEEE-----EECCSCCTT---EEEETTCSCHHHHHHHHTTCC-
T ss_pred ECCHHHHHHHHHHhCCCccccccCCceEEEEEEeecccccc-----cccccCCCc---eEEEcCcCCHHHHHHHHHhccc
Confidence 9999999999999999999 355 68888874433222 222233443 2223333899988999988887
Q ss_pred cccc
Q psy12245 179 SSRR 182 (189)
Q Consensus 179 ~~~~ 182 (189)
.+.+
T Consensus 135 ~~~~ 138 (345)
T 3tht_A 135 TEDT 138 (345)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.07 E-value=2.1e-10 Score=90.29 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=64.9
Q ss_pred CCCeEEecCCCC-CccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYI-NPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
.+++|++.|+.. . ++++ +|++.| ++||.|.+|.|..+. +|++||+|.
T Consensus 2 ~~~~l~v~nlp~~~----------------~~~~-----------~l~~~F-~~~G~i~~v~i~~~~----~g~afV~f~ 49 (198)
T 1qm9_A 2 GNSVLLVSNLNPER----------------VTPQ-----------SLFILF-GVYGDVQRVKILFNK----KENALVQMA 49 (198)
T ss_dssp CCCEEEEECCCSSS----------------CCHH-----------HHHHHH-HTTCCCSEEECSTTC----SSCCEEECT
T ss_pred CCcEEEEeCCCccc----------------CCHH-----------HHHHHH-HhcCCEEEEEEEeCC----CCEEEEEEC
Confidence 468999999875 3 3333 566677 799999999999763 799999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++.|||..++|++|.+.++..
T Consensus 50 ~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 50 DGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp TTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 99999999999999999999999999843
No 196
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.5e-10 Score=82.76 Aligned_cols=78 Identities=12% Similarity=0.227 Sum_probs=60.1
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-C---CCeeeEEE
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-G---DHLVGNVY 101 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~---~~~~G~vf 101 (189)
..+++|.+.|+-.. ++++ ||++.| ++||+|. +.++.+. + +..+|++|
T Consensus 6 ~~~~~lfVgnLp~~----------------~te~-----------~L~~~F-~~~G~i~-~~~~~~~~~~~~g~~~G~aF 56 (114)
T 2dnl_A 6 SGSRKVFVGGLPPD----------------IDED-----------EITASF-RRFGPLV-VDWPHKAESKSYFPPKGYAF 56 (114)
T ss_dssp SCCCCEEEECCCTT----------------CCHH-----------HHHHHT-TTTCCCC-EECTTSSSSCCCSCTTSEEE
T ss_pred CCCCEEEEcCCCCC----------------CCHH-----------HHHHHH-HhcCCEE-EEEeecCCCCCCCCcccEEE
Confidence 35789999998652 3444 566677 7999999 7776543 2 47899999
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|+|.+.++|.+|++.|++ ++|+.|.+...+.
T Consensus 57 V~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 57 LLFQEESSVQALIDACLE--EDGKLYLCVSSPT 87 (114)
T ss_dssp ECCSSHHHHHHHHHHSEE--ETTEEEEEECCSS
T ss_pred EEECCHHHHHHHHHhhhh--cCCcEEEeccCCC
Confidence 999999999999999954 7788777766544
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.05 E-value=6.5e-10 Score=92.03 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=64.6
Q ss_pred CCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q psy12245 25 PTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 25 P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F 104 (189)
++.+.+|.|.|+... +|++ ||++.| ++||.|.+|.|..+ +|++||+|
T Consensus 19 ~~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~i~~v~i~~~-----kg~afV~f 65 (261)
T 3sde_A 19 YTQRCRLFVGNLPTD----------------ITEE-----------DFKRLF-ERYGEPSEVFINRD-----RGFGFIRL 65 (261)
T ss_dssp SCGGGEEEEESCCTT----------------CCHH-----------HHHHHT-GGGCCCSEEEEETT-----TTEEEEEC
T ss_pred CCCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HhcCCEEEEEEeCC-----CcEEEEEE
Confidence 345578999999652 4443 566677 79999999999765 79999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 105 RREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 66 ~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 66 ESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 99999999999999999999999999974
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.03 E-value=1.4e-09 Score=90.06 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=56.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh-CCCEeC---CeeEEEEeccCc
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDL-NNRWFG---GRPVYAELSPVT 135 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~L-nGr~f~---GR~I~v~~~~~~ 135 (189)
||++.| ++||.|.+|.|+.+.++..+|++||+|.+.++|.+|+..| +|.++. ||+|.|.++...
T Consensus 112 ~l~~~F-~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 112 LLEQAF-SQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHH-GGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHH-HhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 577778 7999999999998777788999999999999999999999 566665 999999998543
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.03 E-value=7.1e-10 Score=92.36 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=64.8
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYG-EIEEMNVCDNLGDHLVGNVYI 102 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG-~I~~v~i~~~~~~~~~G~vfV 102 (189)
.+..+.+|.|.|+... ++++ +|++.| ++|| .|.+|.|+.+..+..+|++||
T Consensus 113 ~~~~~~~l~v~nlp~~----------------~t~~-----------~l~~~f-~~~G~~i~~v~i~~~~~~~~~g~afV 164 (292)
T 2ghp_A 113 SHLTECTLWMTNFPPS----------------YTQR-----------NIRDLL-QDINVVALSIRLPSLRFNTSRRFAYI 164 (292)
T ss_dssp EECCSCEEEEECCCTT----------------CCHH-----------HHHHHH-HHTTCCCCEEECC-------CCEEEE
T ss_pred EECCCCEEEEECCCCC----------------CCHH-----------HHHHHH-HHhCCCeEEEEEEeCCCCCcceEEEE
Confidence 3456788999888652 3333 566777 7999 999999998765678999999
Q ss_pred EecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 103 KFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 103 ~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 165 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 165 DVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 99999999999999999999999999999854
No 200
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1e-09 Score=78.56 Aligned_cols=60 Identities=15% Similarity=0.357 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 66 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 66 ~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+++..+|.+.| ++||+|..++|..+. +||+|.+.++|.+|++ |||..++||.|+|.+...
T Consensus 26 ~~l~~~L~~~F-~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 26 DALIDELLQQF-ASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHHHH-HTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHHHH-HhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 47788999999 799999999999752 8999999999999998 999999999999999743
No 201
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.00 E-value=9.5e-10 Score=83.66 Aligned_cols=78 Identities=13% Similarity=0.270 Sum_probs=64.4
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEec
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNL-GDHLVGNVYIKFR 105 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~-~~~~~G~vfV~F~ 105 (189)
.+++|.|.|+... +|++ ||++.| ++||+|.+|.|..+. ++..+|++||+|.
T Consensus 2 ~~~~l~v~nLp~~----------------~t~~-----------~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 53 (167)
T 2cjk_A 2 ESCKMFIGGLNWD----------------TTED-----------NLREYF-GKYGTVTDLKIMKDPATGRSRGFGFLSFE 53 (167)
T ss_dssp GGGEEEECSCCTT----------------CCHH-----------HHHHHH-TTTCCEEEEECCCCTTTSSCCSCEEEEES
T ss_pred CCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HhCCCEEEEEEEECCCCCCccceEEEEEc
Confidence 4678999998752 4444 566677 799999999998874 5788999999999
Q ss_pred CHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+.++|.+|++. +..++|+.|.+.++..
T Consensus 54 ~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 54 KPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp STHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred cHHHHHHHHhc--ccccCCeEcccccccc
Confidence 99999999984 6799999999988743
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.98 E-value=1.5e-09 Score=87.49 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=60.7
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCe--eEEEEeeCCCCCeeeEEEEEe
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEI--EEMNVCDNLGDHLVGNVYIKF 104 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I--~~v~i~~~~~~~~~G~vfV~F 104 (189)
.+++|.+.|+-.. ++++ ||++.| ++||.| .++.|..+. +..+|++||+|
T Consensus 122 p~~~l~v~NLp~~----------------~t~~-----------~L~~~F-~~~G~v~~~~v~~~~~~-~~~~g~gfV~f 172 (205)
T 3tyt_A 122 PSNVLHFFNAPLE----------------VTEE-----------NFFEIC-DELGVKRPTSVKVFSGK-SERSSSGLLEW 172 (205)
T ss_dssp CCSEEEEEEECTT----------------CCHH-----------HHHHHH-HHHTCCCCSEEEECSCC-SSSSEEEEEEC
T ss_pred CcceEEEeCCCCC----------------CCHH-----------HHHHHH-HhcCCcceEEEEEEcCC-CCCceEEEEEe
Confidence 4678888888652 4443 566677 699999 899998764 33469999999
Q ss_pred cCHHHHHHHHHHhCCCEeCCe----eEEEEe
Q psy12245 105 RREEDAEKAVNDLNNRWFGGR----PVYAEL 131 (189)
Q Consensus 105 ~~~e~A~~A~~~LnGr~f~GR----~I~v~~ 131 (189)
.+.++|.+|+..|||..++|+ ++.+.|
T Consensus 173 ~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 173 DSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 999999999999999999998 566555
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.97 E-value=1.5e-10 Score=89.05 Aligned_cols=82 Identities=21% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q psy12245 24 KPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIK 103 (189)
Q Consensus 24 ~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~ 103 (189)
.|..+.+|.|.|+... ++++ ||++.| ++||.|..+.|.....+..+|++||+
T Consensus 9 ~~~~~~~l~V~nLp~~----------------~t~~-----------~l~~~f-~~~g~~~~~~~~~~~~~~~~g~afV~ 60 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPN----------------KSVA-----------ELKVAI-SELFAKNDLAVVDVRTGTNRKFGYVD 60 (175)
T ss_dssp SCSSSEEEEEECCCTT----------------SCHH-----------HHHHHH-HHHHHHHTCCCCEEEEETTTTEEEEE
T ss_pred CCCCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HHhCCcceEEEEECCCCccccEEEEE
Confidence 4667899999999763 4444 444455 46666555333322234568999999
Q ss_pred ecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 104 FRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 104 F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
|.+.++|.+|+ .|||..+.|++|.+.++..
T Consensus 61 f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 61 FESAEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp ESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred ECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 99999999999 4999999999999999854
No 204
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.95 E-value=5.8e-09 Score=79.63 Aligned_cols=73 Identities=12% Similarity=0.284 Sum_probs=59.9
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcC----C-------CeeEEEEeeCCCCC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKY----G-------EIEEMNVCDNLGDH 95 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kf----G-------~I~~v~i~~~~~~~ 95 (189)
.+++|.+.|+... ++++ ||++.| ++| | .|.++.+..+
T Consensus 3 ~~~~l~V~nLp~~----------------~t~~-----------~l~~~F-~~~g~~~g~~~~~~~~v~~~~~~~~---- 50 (172)
T 2g4b_A 3 SARRLYVGNIPFG----------------ITEE-----------AMMDFF-NAQMRLGGLTQAPGNPVLAVQINQD---- 50 (172)
T ss_dssp GGGEEEEESCCTT----------------CCHH-----------HHHHHH-HHHHHHTTCCSSSSCSEEEEEEETT----
T ss_pred cccEEEEcCCCcc----------------cCHH-----------HHHHHH-HHHhhhcccccCCCCceeeeEecCC----
Confidence 4689999999752 4444 445555 577 7 8888888754
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 96 LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 96 ~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+|++||+|.+.++|.+|+ .|||..++|++|.+.+..
T Consensus 51 -~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 51 -KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (172)
T ss_dssp -TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCS
T ss_pred -CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCc
Confidence 799999999999999999 899999999999998863
No 205
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.93 E-value=2.7e-09 Score=83.27 Aligned_cols=74 Identities=12% Similarity=0.287 Sum_probs=59.8
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcC----C-------CeeEEEEeeCCCCC
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKY----G-------EIEEMNVCDNLGDH 95 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kf----G-------~I~~v~i~~~~~~~ 95 (189)
.+++|++.|+... ++++ ||++.| ++| | .|.++.+...
T Consensus 3 ~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~g~i~g~~~~~~~~v~~~~~~~~---- 50 (198)
T 2yh0_A 3 MARRLYVGNIPFG----------------ITEE-----------AMMDFF-NAQMRLGGLTQAPGNPVLAVQINQD---- 50 (198)
T ss_dssp -CCEEEEESCCTT----------------CCHH-----------HHHHHH-HHHHHHHTCCSSSSCSEEEEEEETT----
T ss_pred ceeEEEEcCCCCC----------------CCHH-----------HHHHHH-HHHHhhcccccCCCCceEEeEecCC----
Confidence 5789999999863 4444 455566 577 5 7888877654
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccC
Q psy12245 96 LVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPV 134 (189)
Q Consensus 96 ~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~ 134 (189)
+|++||+|.+.++|.+|+ .|||..++|++|.+.++..
T Consensus 51 -~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 51 -KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp -TTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCC
T ss_pred -CCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCC
Confidence 799999999999999999 8999999999999998743
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.9e-09 Score=77.69 Aligned_cols=61 Identities=13% Similarity=0.298 Sum_probs=54.9
Q ss_pred HHH-HHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 63 EHY-DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 63 ~~~-~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.+| +++..+|.+.| +.||+|..+++..+ .+||+|.+.++|.+|++ |||..++||.|+|.+-
T Consensus 31 ~~fd~~l~~~L~~~F-~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 31 NEFPEDLRTELMQTL-GSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HSCCHHHHHHHHHHH-HHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred ccCCHHHHHHHHHHH-HHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 344 48889999999 79999999999976 29999999999999998 9999999999999874
No 207
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.5e-09 Score=75.43 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=57.8
Q ss_pred CCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEec
Q psy12245 26 TFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 105 (189)
Q Consensus 26 ~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~ 105 (189)
..+++|.|.|+... ++++ ||++.| ++||+|.+|.|+.+ .+|++||+|.
T Consensus 3 ~~~~~l~V~nLp~~----------------~te~-----------~l~~~F-~~~G~i~~v~i~~~----~~g~afV~f~ 50 (88)
T 1wf0_A 3 SGSSGVFVGRCTGD----------------MTED-----------ELREFF-SQYGDVMDVFIPKP----FRAFAFVTFA 50 (88)
T ss_dssp SCCCEEEEESCCSS----------------SCHH-----------HHHHHS-TTTSCCCEEECCSS----CCSCCEEECS
T ss_pred CCCcEEEEeCCCCC----------------CCHH-----------HHHHHH-HHcCCeeEEEEecC----CCCEEEEEEC
Confidence 35789999999652 3443 566777 79999999999875 5899999999
Q ss_pred CHHHHHHHHHHhCCCEe--CCeeEEEEeccC
Q psy12245 106 REEDAEKAVNDLNNRWF--GGRPVYAELSPV 134 (189)
Q Consensus 106 ~~e~A~~A~~~LnGr~f--~GR~I~v~~~~~ 134 (189)
+.++|++ |+|..+ .|+.|.+.++..
T Consensus 51 ~~~~a~~----~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 51 DDQIAQS----LCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CHHHHHH----TTTCEEEETTEEEEEECCCC
T ss_pred CHHHHHH----HhcCCceeCCEEEEEEecCC
Confidence 9999975 455555 999999998743
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=4.4e-06 Score=62.55 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=50.0
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC-HHHHHHHHHHh--CCCEeCCeeEEEEec
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDL--NNRWFGGRPVYAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~-~e~A~~A~~~L--nGr~f~GR~I~v~~~ 132 (189)
+||++.| ++||+|..|.+.... -.+||+|.+ .++|.+|++.| +|..+.|..+++++.
T Consensus 34 edLke~F-~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 34 EDLHILF-SNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp HHHHHHT-CSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred HHHHHHH-HhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 3788888 799999999998763 369999999 89999999999 488899999999987
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=2.5e-05 Score=57.62 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=59.6
Q ss_pred CCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcC-----CCeeEEEEeeCCCCCeeeEEE
Q psy12245 27 FSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKY-----GEIEEMNVCDNLGDHLVGNVY 101 (189)
Q Consensus 27 ~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kf-----G~I~~v~i~~~~~~~~~G~vf 101 (189)
..+||-|-|+.| ++++.. |+.-. .+| |.|.+|.+..+ -|=|.
T Consensus 20 ~~rtiaL~~ipD----------------tvndar-----------Ir~lv-e~~~~i~~g~i~KI~L~pD-----H~GAi 66 (117)
T 2l9w_A 20 LETLICLFPLSD----------------KVSPSL-----------ICQFL-QEEIHINEKDIRKILLVSD-----FNGAI 66 (117)
T ss_dssp TTSCEEEECCCT----------------TCCHHH-----------HHHHH-HHHTCCCTTTCSEEEEETT-----TTEEE
T ss_pred CCcEEEEecCCC----------------CCCHHH-----------HHHHH-hhhhccCccceeEEEEecC-----CCceE
Confidence 467888888876 355554 44445 477 99999999877 36689
Q ss_pred EEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 102 IKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 102 V~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|+|.+...|-+|.-+|||..|+||+|.+.-.
T Consensus 67 vef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 67 IIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp EECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred EEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 9999999999999999999999999999755
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00024 Score=51.70 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 68 FFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 68 ~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
+.+.+++.+ .+|+++......+. -..|-|.|.++++|.+|-..|||..|.|+.+.+.|..
T Consensus 23 lk~~~e~Lf-~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 23 TRAKFESLF-RTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHHHHHHHH-HTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred HHHHHHHHH-HhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 334667777 69999999877754 4589999999999999999999999999999999986
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.26 E-value=0.00075 Score=50.22 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCC-eeEEEEec
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGG-RPVYAELS 132 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~G-R~I~v~~~ 132 (189)
..|..+| ++||.|.+...+.. ...++|+|.+..+|++|+. .||..++| -.|=|..+
T Consensus 38 ~~VL~~F-~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 38 SYILLQF-AQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp HHHHHHH-HTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred HHHHHHH-HhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 3688899 69999999998432 5689999999999999998 69999986 44555443
No 212
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.18 E-value=0.00032 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.865 Sum_probs=18.8
Q ss_pred CCccccceecCcCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHN 23 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~ 23 (189)
+.|.|| ..|.|++|+.|...|.
T Consensus 14 ~lC~~f-~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 14 ELCKFY-ITGFCARAENCPYMHG 35 (98)
T ss_dssp SBCTTT-TTTCCSCSTTCSSBSS
T ss_pred ccCccc-ccCcCCCCCCCCCCCC
Confidence 469988 4799999999998887
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.03 E-value=0.016 Score=43.42 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=28.4
Q ss_pred EEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCE
Q psy12245 85 EMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW 121 (189)
Q Consensus 85 ~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~ 121 (189)
++.|..+.. .++|++||+|.+.++|++|++.+++..
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 345555432 579999999999999999999988643
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.98 E-value=0.0072 Score=45.63 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCCeeE-EEEeeCC----------C--C--CeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEecc
Q psy12245 71 DVFVECEDKYGEIEE-MNVCDNL----------G--D--HLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133 (189)
Q Consensus 71 DI~~e~e~kfG~I~~-v~i~~~~----------~--~--~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~ 133 (189)
-|.++| ++||.|.+ +.+.+.. . . .....+.|+|.+..+|.+|++ -||+.|+|-.|=|..+.
T Consensus 22 ~VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 22 QVIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 578889 69999977 3222100 0 0 135689999999999999997 89999999877777764
No 215
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.80 E-value=0.0039 Score=42.04 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=21.8
Q ss_pred CCccccceecCcCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNK 24 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~ 24 (189)
+.|.+|.++|.|++|++|...|..
T Consensus 13 ~~C~~f~~~G~C~~G~~C~f~H~~ 36 (77)
T 1m9o_A 13 ELCRTYSESGRCRYGAKCQFAHGL 36 (77)
T ss_dssp CCCSGGGGTSCCTTTTTCSSCSSS
T ss_pred hhCHHhhhCCCcCCCCCccCCCCC
Confidence 469999999999999999999975
No 216
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.68 E-value=0.0038 Score=46.70 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=36.3
Q ss_pred CeeeEEEEEecCHHHHHHHHHHh-CCCEeCCeeEEEEeccC
Q psy12245 95 HLVGNVYIKFRREEDAEKAVNDL-NNRWFGGRPVYAELSPV 134 (189)
Q Consensus 95 ~~~G~vfV~F~~~e~A~~A~~~L-nGr~f~GR~I~v~~~~~ 134 (189)
.++|.++|+|.+.++|++|++.| ||..++| +|.+.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 67999999999999999999999 9999999 999998754
No 217
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=94.58 E-value=0.011 Score=42.18 Aligned_cols=25 Identities=32% Similarity=0.773 Sum_probs=22.3
Q ss_pred CCccccceecCcCCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKP 25 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P 25 (189)
+.|.||.+.|.|.+|+.|...|...
T Consensus 37 ~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 37 FPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CcCcCcccCCcCCCCCCCcccCCCC
Confidence 4699998889999999999999854
No 218
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.37 E-value=0.0073 Score=40.66 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=0.0
Q ss_pred CccccceecCcCCCCCCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHNKP 25 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~~P 25 (189)
.|.+|.++|.|++|++|...|..+
T Consensus 52 ~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 52 LCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp ------------------------
T ss_pred cccchhhCcCCCCcCcCCCCCCCC
Confidence 699999999999999999999754
No 219
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.68 E-value=0.017 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.594 Sum_probs=24.8
Q ss_pred cCccchhhhhcccccCCCCCCCCCceeeecCC
Q psy12245 133 PVTDFREACCRQYEMGECTRSGFCNFMHLKPI 164 (189)
Q Consensus 133 ~~~~f~~~~c~~~~~~~c~rg~~Cn~~h~~~~ 164 (189)
+....+..+|+.|+.|.|.+|+.|.|.|...+
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence 34455667899999999999989999997543
No 220
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.68 E-value=0.021 Score=38.75 Aligned_cols=30 Identities=20% Similarity=0.628 Sum_probs=23.0
Q ss_pred ccchhhhhcccccCCCCCCCCCceeeecCC
Q psy12245 135 TDFREACCRQYEMGECTRSGFCNFMHLKPI 164 (189)
Q Consensus 135 ~~f~~~~c~~~~~~~c~rg~~Cn~~h~~~~ 164 (189)
..++..+|+.|+.|.|.+|+.|.|+|...+
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CCCcceeCHhHccCcCCCCCCCCCcccccc
Confidence 345567888888888888888888887653
No 221
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.56 E-value=0.55 Score=32.90 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=41.2
Q ss_pred HHHhhcCCCeeEEEEeeCC---CCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCe-----eEEEEecc
Q psy12245 74 VECEDKYGEIEEMNVCDNL---GDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGR-----PVYAELSP 133 (189)
Q Consensus 74 ~e~e~kfG~I~~v~i~~~~---~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR-----~I~v~~~~ 133 (189)
+.+ +.++++.-....... ....-..|||.|.+.+++..-.+.++|..|-.. +-.|+|++
T Consensus 20 ~~l-~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 20 EHL-QPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp HHH-CSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred HHh-cCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 344 566776655554322 235678999999999999999999999999322 23456654
No 222
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.50 E-value=0.019 Score=38.97 Aligned_cols=24 Identities=33% Similarity=0.970 Sum_probs=18.4
Q ss_pred CCccccceecCcCCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKP 25 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P 25 (189)
+.|.||.+ |.|+.|+.|...|...
T Consensus 11 ~~C~~fl~-G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 11 VVCKHWLR-GLCKKGDQCEFLHEYD 34 (77)
T ss_dssp SBCHHHHT-TCCSCTTSSSSBCSCC
T ss_pred eeCHhHcc-CcCCCCCCCCCccccc
Confidence 46777777 8888888888888654
No 223
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=93.38 E-value=0.019 Score=38.39 Aligned_cols=25 Identities=36% Similarity=0.838 Sum_probs=21.4
Q ss_pred hhhhcccccCCCCCCC-CCceeeecC
Q psy12245 139 EACCRQYEMGECTRSG-FCNFMHLKP 163 (189)
Q Consensus 139 ~~~c~~~~~~~c~rg~-~Cn~~h~~~ 163 (189)
.++|+.|+.|.|.+|+ .|.|.|...
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcc
Confidence 3579999999999999 599999753
No 224
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.25 E-value=0.033 Score=38.59 Aligned_cols=25 Identities=32% Similarity=0.837 Sum_probs=20.0
Q ss_pred hhhhcccccCCCCCCC-CCceeeecC
Q psy12245 139 EACCRQYEMGECTRSG-FCNFMHLKP 163 (189)
Q Consensus 139 ~~~c~~~~~~~c~rg~-~Cn~~h~~~ 163 (189)
-.+|+.|+.|.|.+|+ .|.|+|...
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred chhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 4678888888888886 888888864
No 225
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.17 E-value=0.019 Score=38.54 Aligned_cols=21 Identities=33% Similarity=0.800 Sum_probs=17.9
Q ss_pred CccccceecCcCCCCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHN 23 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~ 23 (189)
.|..| .+|.|++|++|...|-
T Consensus 22 LC~~~-~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 22 ICDRY-MNGTCPEGNSCKFAHG 42 (69)
T ss_dssp BCHHH-HHSCCSSCSSCSSBSS
T ss_pred cCccc-CcCCCCCCCccCCcCC
Confidence 58878 5799999999998884
No 226
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.26 E-value=0.034 Score=37.39 Aligned_cols=24 Identities=33% Similarity=0.970 Sum_probs=19.0
Q ss_pred CCccccceecCcCCCCCCCCCCCCC
Q psy12245 1 VNCSFYFKIGACRHGDRCSRIHNKP 25 (189)
Q Consensus 1 ~~C~f~~k~g~Cr~g~~C~~~H~~P 25 (189)
++|.||.+ |.|+.|+.|...|...
T Consensus 17 ~vCk~fl~-G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 17 VVCKHWLR-GLCKKGDQCEFLHEYD 40 (72)
T ss_dssp SBCHHHHT-TCCCCGGGSSSBCSCC
T ss_pred eeCHHHhc-CCCCCCCCCCCccccc
Confidence 46888877 8888888888888743
No 227
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=92.15 E-value=0.032 Score=39.22 Aligned_cols=27 Identities=37% Similarity=0.776 Sum_probs=23.4
Q ss_pred hhhhhcccccCCCCCCC-CCceeeecCC
Q psy12245 138 REACCRQYEMGECTRSG-FCNFMHLKPI 164 (189)
Q Consensus 138 ~~~~c~~~~~~~c~rg~-~Cn~~h~~~~ 164 (189)
...+|+.|+.|.|.+|+ .|.|+|....
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 34689999999999998 9999998653
No 228
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.19 E-value=0.057 Score=36.21 Aligned_cols=28 Identities=32% Similarity=0.768 Sum_probs=23.8
Q ss_pred cCccchhhhhcccccCCCCCCCCCceeeec
Q psy12245 133 PVTDFREACCRQYEMGECTRSGFCNFMHLK 162 (189)
Q Consensus 133 ~~~~f~~~~c~~~~~~~c~rg~~Cn~~h~~ 162 (189)
|..+| ..|..|..|.|+.|+.|.|.|=.
T Consensus 16 P~~k~--~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 16 PTGYF--SICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp CCSCC--SBCHHHHHSCCSSCSSCSSBSSH
T ss_pred CCCCc--ccCcccCcCCCCCCCccCCcCCH
Confidence 33455 89999999999999999999975
No 229
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=90.93 E-value=0.045 Score=36.44 Aligned_cols=28 Identities=29% Similarity=0.702 Sum_probs=23.5
Q ss_pred ccchhhhhcccccCCCCCCCCCceeeecC
Q psy12245 135 TDFREACCRQYEMGECTRSGFCNFMHLKP 163 (189)
Q Consensus 135 ~~f~~~~c~~~~~~~c~rg~~Cn~~h~~~ 163 (189)
......+|..|+.|.|.+| .|.|+|+.+
T Consensus 38 ~~~~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 38 NDNTVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp TTTEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred cCCcceeccccCcCCCCCC-CcCeeCCHH
Confidence 4455678999999999999 999999753
No 230
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.92 E-value=0.043 Score=45.19 Aligned_cols=30 Identities=20% Similarity=0.583 Sum_probs=27.2
Q ss_pred hhcccccCCCCCCCCCceeeecCCCHHHHH
Q psy12245 141 CCRQYEMGECTRSGFCNFMHLKPISRELRR 170 (189)
Q Consensus 141 ~c~~~~~~~c~rg~~Cn~~h~~~~~~~l~~ 170 (189)
.|.-|..|.|.+|..|.|+|-+|.+.++.+
T Consensus 72 ~C~ffakG~C~~G~~C~y~H~lPt~~d~~~ 101 (240)
T 3u1l_A 72 FCLFFAKGMCCLGPKCEYLHHIPDEEDIGK 101 (240)
T ss_dssp BCHHHHTTCCSCGGGCSSBBSCCCHHHHHH
T ss_pred EcCccccCCCCCCCCCCccCCCCCccchhh
Confidence 788899999999999999999998888763
No 231
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.78 E-value=0.031 Score=39.91 Aligned_cols=25 Identities=32% Similarity=0.804 Sum_probs=20.1
Q ss_pred hhhhcccccCCCCCCC-CCceeeecC
Q psy12245 139 EACCRQYEMGECTRSG-FCNFMHLKP 163 (189)
Q Consensus 139 ~~~c~~~~~~~c~rg~-~Cn~~h~~~ 163 (189)
..+|+.|+.|.|.+|+ .|.|.|...
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 3578888888888888 688888864
No 232
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=88.72 E-value=1.9 Score=30.79 Aligned_cols=62 Identities=15% Similarity=0.290 Sum_probs=44.2
Q ss_pred CCCCCCCCCeEEecCCCCCccCCccCCCCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEE
Q psy12245 21 IHNKPTFSQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNV 100 (189)
Q Consensus 21 ~H~~P~~S~~v~l~Nm~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~v 100 (189)
.+..|....+++| . |++ + ... .||.+.| +.||.|.=-+|.+ .-|
T Consensus 9 ~d~~p~r~HVf~l-~-FP~-e--------------wKt-----------~DI~~lF-s~fggv~I~WidD-------TsA 52 (100)
T 1whv_A 9 PDLQPKRDHVLHV-T-FPK-E--------------WKT-----------SDLYQLF-SAFGNIQISWIDD-------TSA 52 (100)
T ss_dssp SCCCCCCCSEEEE-E-CCT-T--------------CCH-----------HHHHHHH-TTTCSCCCEEEET-------TEE
T ss_pred CCCCCCCCeEEEE-e-CCh-h--------------hhh-----------HHHHHHh-hccCCEEEEEEcC-------CeE
Confidence 4667888889988 3 332 2 222 2677778 7999665445543 459
Q ss_pred EEEecCHHHHHHHHHHhC
Q psy12245 101 YIKFRREEDAEKAVNDLN 118 (189)
Q Consensus 101 fV~F~~~e~A~~A~~~Ln 118 (189)
||.|.+++.|..|++.++
T Consensus 53 lvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 53 FVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEECSCHHHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHhcc
Confidence 999999999999999774
No 233
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.86 E-value=0.12 Score=36.81 Aligned_cols=35 Identities=26% Similarity=0.589 Sum_probs=26.8
Q ss_pred ccchhhhhcccccCCCCCCCCCceeeecCCCHHHHHHHH
Q psy12245 135 TDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 173 (189)
Q Consensus 135 ~~f~~~~c~~~~~~~c~rg~~Cn~~h~~~~~~~l~~~l~ 173 (189)
......+|..|+.|.|.++ .|.|+|+.+ .|...|-
T Consensus 52 ~~~~~~vC~~flkG~C~r~-~C~y~H~~~---~l~~~~~ 86 (98)
T 2e5s_A 52 SDNTVTVCMDYIKGRCMRE-KCKYFHPPA---HLQAKIK 86 (98)
T ss_dssp TTCEEEBCHHHHHTCCCCT-TCCSBCCCH---HHHHHHH
T ss_pred cCCccccchhhccCCCCCC-CcCccCChH---HHHHHHH
Confidence 3456678999999999998 999999754 4444443
No 234
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=80.87 E-value=1.3 Score=31.70 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhC
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 118 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~Ln 118 (189)
||.+.| +.||.|.=-+|. ..-|||.|.+++.|..|+..++
T Consensus 21 Di~~lF-s~fggv~I~Wid-------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 21 DLYQLF-SAFGNIQISWID-------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHT-TTSEEEEEEEEE-------TTEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHH-hccCCEEEEEEc-------CCeEEEEecCHHHHHHHHHhcc
Confidence 677788 799944333333 2469999999999999999875
No 235
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=80.09 E-value=0.83 Score=41.01 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHH
Q psy12245 71 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVN 115 (189)
Q Consensus 71 DI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~ 115 (189)
++.+-| ++||+|.++...+.. .-+|-|+|.+.++|..++.
T Consensus 68 ~l~~y~-~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 68 KFLKYL-SQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHHH-GGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HHHHHH-HhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 566778 799999999999763 3589999999998886643
No 236
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=80.04 E-value=0.51 Score=29.49 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=22.4
Q ss_pred CccccceecCcCCCCCCCCCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGDRCSRIHNKPTFS 28 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~~C~~~H~~P~~S 28 (189)
.|.=|.--|-|++|.+|+..|..-..+
T Consensus 22 iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 22 ICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp BCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred hhhhccccccCCCCCCCCccccCCCCC
Confidence 477788889999999999999865543
No 237
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=79.96 E-value=7.9 Score=27.29 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=30.9
Q ss_pred CeeeEEEEEecCHHHHHHHHHHhCCCEeCCe-----eEEEEecc
Q psy12245 95 HLVGNVYIKFRREEDAEKAVNDLNNRWFGGR-----PVYAELSP 133 (189)
Q Consensus 95 ~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR-----~I~v~~~~ 133 (189)
..-..|||.|.+.++...-.+.++|..|-+. +-.|+|+|
T Consensus 51 ~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 51 HLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp SCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred CcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 4457899999999999999999999999332 34566665
No 238
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=78.75 E-value=1.1 Score=30.73 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=20.6
Q ss_pred CccccceecCcCCCC-CCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGD-RCSRIHNKP 25 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~-~C~~~H~~P 25 (189)
+|.+|.+ |.|..|+ .|...|..+
T Consensus 11 VCr~Flr-G~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 11 VCREFQR-GTCSRPDTECKFAHPSK 34 (83)
T ss_dssp BCTTGGG-TCCCSCTTTCSSBCCCT
T ss_pred hcHHHhc-CCCCCCCCCCCCcCCCc
Confidence 6999999 9999997 999999865
No 239
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=69.15 E-value=12 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=28.3
Q ss_pred eeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q psy12245 83 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 119 (189)
Q Consensus 83 I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnG 119 (189)
|.++.++.. ..|++||+....++...+++.+.|
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCC
Confidence 888888864 689999999999999999887765
No 240
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=68.04 E-value=1.7 Score=30.24 Aligned_cols=24 Identities=25% Similarity=0.685 Sum_probs=20.3
Q ss_pred CccccceecCcCCCC-CCCCCCCCCC
Q psy12245 2 NCSFYFKIGACRHGD-RCSRIHNKPT 26 (189)
Q Consensus 2 ~C~f~~k~g~Cr~g~-~C~~~H~~P~ 26 (189)
+|..|.+ |.|..|+ .|...|....
T Consensus 19 VCrdFlr-G~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 19 VCRQFQR-GTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp BCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred hchHHhc-CCCCCCCCCCCCcCCCcc
Confidence 6888888 9999998 9999998544
No 241
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=67.43 E-value=4.5 Score=28.90 Aligned_cols=35 Identities=14% Similarity=0.397 Sum_probs=29.4
Q ss_pred CeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCC
Q psy12245 82 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120 (189)
Q Consensus 82 ~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr 120 (189)
.|.+|..+.. .+|++||+=.+..+...|++.+.+-
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4888888864 6999999999999999998877553
No 242
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=63.94 E-value=2.8 Score=34.14 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.2
Q ss_pred Ccccccee----cCcCCCCCCCCCCCC
Q psy12245 2 NCSFYFKI----GACRHGDRCSRIHNK 24 (189)
Q Consensus 2 ~C~f~~k~----g~Cr~g~~C~~~H~~ 24 (189)
+|.+| |- |.|-+++.|+|.|+=
T Consensus 153 iC~~Y-kG~g~~g~C~~~~~C~kLHIC 178 (229)
T 3u9g_A 153 ICKSY-KGEGRKQTCGQPQPCERLHIC 178 (229)
T ss_dssp BCTTC-CCSSSCCSCSSSSCCCSBCSC
T ss_pred HHHHh-CCCCCCCcCCCCCCCcceecc
Confidence 59999 83 699999999999984
No 243
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.52 E-value=19 Score=25.64 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=34.6
Q ss_pred CCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 81 GEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 81 G~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
|+|++|.... +-|.|+|.+.+.|+..++ -.-..+.|-+|.|.-+
T Consensus 38 G~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 38 GPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred ceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 6899998864 558999999999988876 3356778888888654
No 244
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=49.54 E-value=9 Score=30.44 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=35.0
Q ss_pred eeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEeccCcc
Q psy12245 83 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136 (189)
Q Consensus 83 I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~~~~~ 136 (189)
|.+|.++. +.+|++||+=.+..+...|++.+.+- |..++ .+.|...
T Consensus 139 I~Si~~~d----~lkGYIyVEA~~~~~V~~ai~Gi~~v-y~~~~---~lVPi~E 184 (200)
T 2exu_A 139 ILSIFQRD----NYTGRIYIEAPKQSVIEKFCNGVPDI-YISQK---LLIPVQE 184 (200)
T ss_dssp CCEEECCT----TSTTEEEEECSCHHHHHHHHTTCTTE-EEEEE---EECCGGG
T ss_pred EEEEEecC----CCcEEEEEEECCHHHHHHHHhhhhhh-hcCCc---eEecHHH
Confidence 77777765 47999999999999999999999885 33333 4555544
No 245
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=42.03 E-value=22 Score=26.33 Aligned_cols=34 Identities=9% Similarity=0.243 Sum_probs=29.1
Q ss_pred eeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCC
Q psy12245 83 IEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNR 120 (189)
Q Consensus 83 I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr 120 (189)
|.++.++.. ..|++||+....++...+++.+.|-
T Consensus 33 i~~v~vp~~----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 888888853 5899999999999999999888764
No 246
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=33.84 E-value=1e+02 Score=22.16 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=22.8
Q ss_pred CCCeeEEEEeeCCCCCeeeEEEEE-ecCHHHHHHHHHHh
Q psy12245 80 YGEIEEMNVCDNLGDHLVGNVYIK-FRREEDAEKAVNDL 117 (189)
Q Consensus 80 fG~I~~v~i~~~~~~~~~G~vfV~-F~~~e~A~~A~~~L 117 (189)
+=+|.+|.|-.+. ....|||. |-+.++...++..|
T Consensus 43 ~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDF---SACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTS---CCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC---cEEEEEEEecCChhhHHHHHHHH
Confidence 4588899988763 46789998 76655444444433
No 247
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=31.26 E-value=48 Score=23.15 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCeeEEEEeeCCCCCeeeEEEEEecC-HHHHHHHHHHhC
Q psy12245 59 EEMQEHYDNFFEDVFVECED-KYGEIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLN 118 (189)
Q Consensus 59 ~e~~~~~~~~~eDI~~e~e~-kfG~I~~v~i~~~~~~~~~G~vfV~F~~-~e~A~~A~~~Ln 118 (189)
++++++..++..+|++.--. .+=+|.+|.|-.+. ....|||.+-. .++...+++.|+
T Consensus 13 ~~i~~~ls~i~~eikDprl~~~~vtVt~V~vs~Dl---~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 13 SEIQKLLMEALQQLRDPRLKKDFVTFSRVELSKDK---RYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp HHHHHHHHHHHHTTCCSSCCGGGCCEEEEEECTTS---CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCccccCCceEEEEEEECCCC---CEEEEEEEeCCChhhHHHHHHHHH
Confidence 34555554443334332100 23478888887663 56789998763 544455554443
No 248
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=28.75 E-value=62 Score=19.51 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q psy12245 57 TDEEMQEHYDNFFEDVFVEC 76 (189)
Q Consensus 57 ~~~e~~~~~~~~~eDI~~e~ 76 (189)
+..+++.+=.+|.++|+.|+
T Consensus 5 ~~~dle~~KqEIL~E~RkEl 24 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKKEL 24 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555
No 249
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=28.15 E-value=74 Score=22.90 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCE---eCCeeEEEEeccC
Q psy12245 58 DEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRW---FGGRPVYAELSPV 134 (189)
Q Consensus 58 ~~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~---f~GR~I~v~~~~~ 134 (189)
.+|+.+.|..+.++|..| =|=|-++++....+ ...|=+|+ |++.++|++-+. ++-.. ++=..|.+.++++
T Consensus 23 geE~~~~f~~lA~si~~e----pGLiwKiWte~e~t-~~aGGiYL-Fes~~~AeaY~~-~h~arl~~~Gi~~i~~kiFdi 95 (113)
T 2hiq_A 23 GDAMAEQLKPLAESINQE----PGFLWKVWTESEKN-HEAGGIYL-FTDEKSALAYLE-KHTARLKNLGVEEVVAKVFDV 95 (113)
T ss_dssp HHHHHHHSHHHHHHHTTS----TTEEEEEEEEETTT-TEEEEEEE-ESSHHHHHHHHH-HHHHHHGGGTCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC----CCcEEEEEEEcCCC-CeeeEEEE-eCCHHHHHHHHH-HHHHHHHHcCCcceEEEEEec
Confidence 467888888888888854 48999999987643 34676775 999888885443 44211 2226788888877
Q ss_pred ccchhhhhcccccCCCC
Q psy12245 135 TDFREACCRQYEMGECT 151 (189)
Q Consensus 135 ~~f~~~~c~~~~~~~c~ 151 (189)
..=..++.+....+-|.
T Consensus 96 n~~ls~i~~~~~~~~~~ 112 (113)
T 2hiq_A 96 NEPLSQINQAKLAGLCG 112 (113)
T ss_dssp CHHHHHHTC--------
T ss_pred ccchhhhcccchhhhcC
Confidence 66555555554444443
No 250
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=27.57 E-value=27 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCC
Q psy12245 57 TDEEMQEHYDNFFEDVFVECEDKYG 81 (189)
Q Consensus 57 ~~~e~~~~~~~~~eDI~~e~e~kfG 81 (189)
+.+|+.++|+...+++.+++..||+
T Consensus 15 d~eEl~~~f~~~l~~~~e~~~~KWN 39 (84)
T 1jsu_C 15 DHEELTRDLEKHCRDMEEASQRKWN 39 (84)
T ss_dssp CHHHHHHHHHHHHTTTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3578888999888888888866775
No 251
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.88 E-value=76 Score=29.10 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=32.5
Q ss_pred hhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhC
Q psy12245 77 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLN 118 (189)
Q Consensus 77 e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~Ln 118 (189)
++.+|-|+++.+---........+.+.|.+.++|.+|+..+-
T Consensus 368 EGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 368 EGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp TTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 368899999988643223456778999999999999988764
No 252
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=26.86 E-value=70 Score=28.54 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q psy12245 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 119 (189)
Q Consensus 70 eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnG 119 (189)
.||.+.+ +.||.| +|.-.. ...+||.|.+.+.|..+++.++.
T Consensus 454 ~~i~~~f-s~fg~v-~V~wid------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLF-SAFGNI-QISWID------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHG-GGGCCC-EEEECS------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHH-HhcCCE-EEEEEc------CCeEEEEECCHHHHHHHHHHHHh
Confidence 4788888 799964 333332 34599999999999999998853
No 253
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=25.49 E-value=69 Score=21.89 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEecC-HHHHHHHHHHhCC
Q psy12245 59 EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRR-EEDAEKAVNDLNN 119 (189)
Q Consensus 59 ~e~~~~~~~~~eDI~~e~e~kfG~I~~v~i~~~~~~~~~G~vfV~F~~-~e~A~~A~~~LnG 119 (189)
++++++..++..+|++.-- .+=+|.+|.+-.+ -....|||.+-. .+++.+|++.-.|
T Consensus 10 ~~i~~~ls~il~ei~Dprl-~~vtVt~V~vs~D---l~~AkVyvs~~~~~~~~~~~L~~a~g 67 (95)
T 2dyj_A 10 AQLKRALAEEIQALEDPRL-FLLTVEAVRLSKD---GSVLSVYVEAFREEEGALRALSRAER 67 (95)
T ss_dssp HHHHHHHHHHHHTCCCGGG-TTCEEEEEEECTT---SSEEEEEEECSSCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhcCccc-CcEEEEEEEECCC---CCEEEEEEEeCCCHHHHHHHHHHhHH
Confidence 3455544444444443321 2446778888766 356789998765 5566666665444
No 254
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=23.75 E-value=93 Score=19.66 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=29.9
Q ss_pred CeeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhCCCEeCCeeEEEEec
Q psy12245 82 EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132 (189)
Q Consensus 82 ~I~~v~i~~~~~~~~~G~vfV~F~~~e~A~~A~~~LnGr~f~GR~I~v~~~ 132 (189)
.|-.|.|..+ +.||+-.. ..|..+++.|++..+.|+.+.++.+
T Consensus 32 ~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 32 DIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp GEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred hccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 4666777643 56777655 5678899999999999999988765
No 255
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=22.84 E-value=27 Score=20.58 Aligned_cols=11 Identities=36% Similarity=0.896 Sum_probs=9.7
Q ss_pred CCCCCCCCcee
Q psy12245 149 ECTRSGFCNFM 159 (189)
Q Consensus 149 ~c~rg~~Cn~~ 159 (189)
.|++|..|||.
T Consensus 26 ~C~rg~~Cn~f 36 (41)
T 1hy9_A 26 DCPRGTSCNSF 36 (41)
T ss_dssp BCCTTCCBCTT
T ss_pred CCCCCCcchhh
Confidence 79999999984
No 256
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=22.69 E-value=28 Score=18.23 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=8.0
Q ss_pred cccccccccCCC
Q psy12245 177 KRSSRRSRSRSR 188 (189)
Q Consensus 177 ~~~~~~~~~~~~ 188 (189)
.+|.+|+.|||.
T Consensus 2 k~s~rrs~~r~k 13 (26)
T 1gff_3 2 KKSIRRSGGKSK 13 (26)
T ss_pred CcccccCCCCCC
Confidence 456777777764
No 257
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=22.54 E-value=1e+02 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=20.7
Q ss_pred CeeEEEEeeCCCCCeeeEEEEEecC---HHHHHHHHHHhC
Q psy12245 82 EIEEMNVCDNLGDHLVGNVYIKFRR---EEDAEKAVNDLN 118 (189)
Q Consensus 82 ~I~~v~i~~~~~~~~~G~vfV~F~~---~e~A~~A~~~Ln 118 (189)
+|.+|.|-.+ -....|||.+-. .++...+++.|+
T Consensus 36 tVt~V~vS~D---l~~AkVyvs~~g~~~~~~~~~~~~~L~ 72 (128)
T 1jos_A 36 TVSDVEVSSD---LSYAKIFVTFLFDHDEMAIEQGMKGLE 72 (128)
T ss_dssp EEEEEEECTT---SCEEEEEEEESCCSCHHHHHHHHHHHH
T ss_pred EEeEEEECCC---CCEEEEEEEeCCCCchhhHHHHHHHHH
Confidence 5666666655 356889998764 444444444443
Done!