RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12245
(189 letters)
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 110 bits (275), Expect = 3e-32
Identities = 82/106 (77%), Positives = 93/106 (87%), Gaps = 2/106 (1%)
Query: 28 SQTILLLNLYINPQNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMN 87
SQTI LLN+Y NPQNS++SADG S V+D EMQEHYD FFE+VF E E+KYGE+EEMN
Sbjct: 1 SQTIALLNIYRNPQNSSQSADGLR--SAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMN 58
Query: 88 VCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133
VCDNLGDHLVGNVY+KFRREEDAEKAV DLNNRWF G+P++AELSP
Sbjct: 59 VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 67.7 bits (165), Expect = 8e-16
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 56 VTDEEMQEHYDNFFEDVFVECEDKYG--EIEEMNVCDNLGDHLVGNVYIKFRREEDAEKA 113
+ E Y+ EDV EC IE D + G ++++F D +KA
Sbjct: 15 PEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA 74
Query: 114 VNDLNNRWFGGRPVYAELSPVTDFRE 139
+ L R F R V + +
Sbjct: 75 MQGLTGRKFANRVVVTKYCDPDSYHR 100
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 62.2 bits (151), Expect = 6e-14
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 52 LISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAE 111
+I N+ E ++ + + + ++ H G + FR E+A+
Sbjct: 12 IIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEAD 71
Query: 112 KAVNDLNNRWFGGRPVYAELS-PVTDFR 138
+ L+ RWFGGR + A+ TD++
Sbjct: 72 YCIQTLDGRWFGGRQITAQAWDGTTDYQ 99
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 46.1 bits (109), Expect = 6e-08
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
S+L V+D ++QE + ++G +++ V + +G + F R+ D
Sbjct: 6 SNLDFGVSDADIQELFA------------EFGTLKKAAVHYDRSGRSLGTADVHFERKAD 53
Query: 110 AEKAVNDLNNRWFGGRPVYAELSP 133
A KA+ N GRP+ +L
Sbjct: 54 ALKAMKQYNGVPLDGRPMNIQLVT 77
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 41.8 bits (98), Expect = 2e-06
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHL-VGNVYIKFRREE 108
L +VT+ + E + G I + VC ++ +G Y+ F++
Sbjct: 6 GDLHPDVTEAMLYEKFS------------PAGPILSIRVCRDMITRRSLGYAYVNFQQPA 53
Query: 109 DAEKAVNDLNNRWFGGRPVYAELS 132
DAE+A++ +N G+PV S
Sbjct: 54 DAERALDTMNFDVIKGKPVRIMWS 77
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 41.9 bits (98), Expect = 3e-06
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L +T EEM + + KYG I ++ V + G Y+ + D
Sbjct: 13 RNLPYKITAEEMYDIFG------------KYGPIRQIRVGNT--PETRGTAYVVYEDIFD 58
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A+ A + L+ R +
Sbjct: 59 AKNACDHLSGFNVCNRYLVVLYY 81
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 41.2 bits (96), Expect = 5e-06
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
++L + +E+++ F + +M G ++ F+
Sbjct: 9 NNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMR----------GQAFVIFKEVSS 58
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A A+ + F +P+ + +
Sbjct: 59 ATNALRSMQGFPFYDKPMRIQYA 81
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 40.6 bits (95), Expect = 8e-06
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 19/78 (24%)
Query: 55 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 114
V +++ F KYG+I +V G ++++ E +A AV
Sbjct: 27 VVKKSDVEAI----FS--------KYGKIVGCSVHK-------GFAFVQYVNERNARAAV 67
Query: 115 NDLNNRWFGGRPVYAELS 132
+ R G+ + L+
Sbjct: 68 AGEDGRMIAGQVLDINLA 85
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 39.5 bits (92), Expect = 2e-05
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 15/96 (15%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L T+E++ E + + + D + G ++++ D
Sbjct: 13 GNLSFYTTEEQIYELFSKSGDIKK-----------IIMGLDKMKKTACGFCFVEYYSRAD 61
Query: 110 AEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQY 145
AE A+ +N R + + F+E RQY
Sbjct: 62 AENAMRYINGTRLDDRIIRTDWDA--GFKEG--RQY 93
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 39.3 bits (91), Expect = 2e-05
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 70 EDVFVECEDKYGEIEEM-NVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128
+ V +G+I ++ D + G +++F EDA A++++N GR +
Sbjct: 19 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 78
Query: 129 AELS 132
L+
Sbjct: 79 VNLA 82
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 39.2 bits (91), Expect = 2e-05
Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
L + + D++++E +F + ++
Sbjct: 7 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA-----------FCEYVDINV 55
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
++A+ LN G + + + +
Sbjct: 56 TDQAIAGLNGMQLGDKKLLVQRA 78
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 39.3 bits (91), Expect = 2e-05
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
L T+ +++E + + + V D G ++ F +D
Sbjct: 15 FGLSLYTTERDLREVFSKYGPIA-----------DVSIVYDQQSRRSRGFAFVYFENVDD 63
Query: 110 AEKAVNDLNNRWFGGRPVY 128
A++A N GR +
Sbjct: 64 AKEAKERANGMELDGRRIR 82
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 38.8 bits (90), Expect = 3e-05
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L ++T+EEM++ ++ + + V G +I+
Sbjct: 14 GNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG-----------------FGFIRLETRTL 56
Query: 110 AEKAVNDLNNRWFGGRPVYAELSP 133
AE A +L+N G+ + +
Sbjct: 57 AEIAKVELDNMPLRGKQLRVRFAC 80
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 39.0 bits (90), Expect = 3e-05
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
L +VT +++ + + V+ + G+ D G+ + +
Sbjct: 14 QGLNDSVTLDDLADFFKQCGV---VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT 70
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A+ AV + + F G + L+
Sbjct: 71 AKAAVEWFDGKDFQGSKLKVSLA 93
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 38.5 bits (89), Expect = 4e-05
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
++L N+T EE + + + E + + + ++ + +D
Sbjct: 8 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG-----------FVNYIDPKD 56
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
AEKA+N LN + + +
Sbjct: 57 AEKAINTLNGLRLQTKTIKVSYA 79
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 38.1 bits (88), Expect = 5e-05
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEE-MNVCDNLGDHLVGNVYIKFRREE 108
++L ++TD E+ + G I + D + G ++ F E
Sbjct: 8 NYLPQDMTDRELYALFR------------AIGPINTCRIMRDYKTGYSYGYAFVDFTSEM 55
Query: 109 DAEKAVNDLNNRWFGGRPVYAELS 132
D+++A+ LN + + +
Sbjct: 56 DSQRAIKVLNGITVRNKRLKVSYA 79
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 39.1 bits (90), Expect = 6e-05
Identities = 9/83 (10%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+++ + V + ++++ ++ + V+ + ++KF+
Sbjct: 48 NYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYG-----------FVKFQSGSS 96
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A++A+ LN + + L+
Sbjct: 97 AQQAIAGLNGFNILNKRLKVALA 119
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 38.1 bits (88), Expect = 6e-05
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 39 NPQNSAKSADG-----SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLG 93
+P S K +L N+T++E++E +++ +
Sbjct: 6 DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDAL----------------EIRLVSQD 49
Query: 94 DHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132
G YI+F+ E DAEK + + GR V +
Sbjct: 50 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 37.7 bits (87), Expect = 9e-05
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNV----YIKFR 105
+L + T+E ++ + K G I+ + V +++++
Sbjct: 4 KNLNFSTTEETLKGVFS------------KVGAIKSCTISKKKNKAGVLLSMGFGFVEYK 51
Query: 106 REEDAEKAVNDLNNRWFGGRPVYAELS 132
+ E A+KA+ L G + +S
Sbjct: 52 KPEQAQKALKQLQGHTVDGHKLEVRIS 78
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 37.4 bits (86), Expect = 1e-04
Identities = 11/83 (13%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L ++E++++ + + + + ++ F E
Sbjct: 14 RNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFA-----------FVTFMFPEH 62
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A KA +++ + F GR ++ S
Sbjct: 63 AVKAYAEVDGQVFQGRMLHVLPS 85
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 37.3 bits (86), Expect = 1e-04
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L +VT+ + + + + ++ + +++F D
Sbjct: 14 GNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-------------FVEFYEHRD 60
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A A+ +N R G+ V +
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWA 83
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.4 bits (86), Expect = 1e-04
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
E + + + V D G + +++ +E A A+ +LN R F GR +
Sbjct: 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82
Query: 130 ELS 132
+ +
Sbjct: 83 DNA 85
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 36.6 bits (84), Expect = 2e-04
Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 45 KSADG-----SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGN 99
+S +G + + ++E+QE + ++ E +
Sbjct: 3 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYA---------- 52
Query: 100 VYIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132
+++ + A A LN G+ + +
Sbjct: 53 -LVEYETHKQALAAKEALNGAEIMGQTIQVDWC 84
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 36.2 bits (83), Expect = 3e-04
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
L V++ + E + V + +++F EED
Sbjct: 15 GGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG-----------FVEFLSEED 63
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A+ A+ ++ G+P+ +
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKA 86
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 36.2 bits (83), Expect = 3e-04
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
HL D+++ + + F + D + ++ +
Sbjct: 24 YHLPQEFGDQDLLQMFMPFGNV-----------VSAKVFIDKQTNLSKCFGFVSYDNPVS 72
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A+ A+ +N G + + +L
Sbjct: 73 AQAAIQSMNGFQIGMKRLKVQLK 95
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.8 bits (82), Expect = 4e-04
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
++L + + ++QE + F D G +I F R ED
Sbjct: 14 TNLSEDTRETDLQELFRPFGSI-----------SRIYLAKDKTTGQSKGFAFISFHRRED 62
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A +A+ ++ + + E +
Sbjct: 63 AARAIAGVSGFGYDHLILNVEWA 85
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 35.7 bits (82), Expect = 5e-04
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
++ E++E + F E V K G ++ F ++D
Sbjct: 14 RNIPFQANQREIRELFSTFGELKTVRLPKKM----------TGTGAHRGFGFVDFITKQD 63
Query: 110 AEKAVNDLNN-RWFGGRPVYAELS 132
A+KA N L + GR + E +
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLEWA 87
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 35.3 bits (81), Expect = 6e-04
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNV-YIKFRREE 108
++L +TD+++ F KYG I + N+ + V ++++ + E
Sbjct: 12 TNLPRTITDDQLDTI----FG--------KYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 59
Query: 109 DAEKAVNDLNNRWFGGR 125
+A++A++ LNN G
Sbjct: 60 EAQEAISALNNVIPEGG 76
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 35.1 bits (80), Expect = 6e-04
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
L TD+++ + + + V + + ++ F
Sbjct: 4 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYG-----------FVDFDSPSA 52
Query: 110 AEKAVNDLNNRWFGGRPV 127
A+KAV L +
Sbjct: 53 AQKAVTALKASGVQAQMA 70
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 34.3 bits (78), Expect = 0.001
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
S L +T +E+++ + + + + D + G +I+F + +
Sbjct: 12 SGLPKTMTQKELEQLFSQYGRII-----------TSRILVDQVTGVSRGVGFIRFDKRIE 60
Query: 110 AEKAVNDLNNRWFGGR 125
AE+A+ LN + G
Sbjct: 61 AEEAIKGLNGQKPSGA 76
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 34.8 bits (79), Expect = 0.001
Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 12/83 (14%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
S+L ++ ++E++ F + + + E
Sbjct: 24 SNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF------------ARMESTEK 71
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
E + N ++ P + +
Sbjct: 72 CEAVIGHFNGKFIKTPPGVSAPT 94
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 33.9 bits (77), Expect = 0.002
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
++ V+ +E+ + + + + + N G + F ++
Sbjct: 15 QNMPFTVSIDEILDFFYGYQVIPGS-----------VCLKYNEKGMPTGEAMVAFESRDE 63
Query: 110 AEKAVNDLNNRWFGGRPVYAEL 131
A AV DLN+R G R V L
Sbjct: 64 ATAAVIDLNDRPIGSRKVKLVL 85
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.9 bits (77), Expect = 0.002
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
S++ D ++++ F + + E + ++ F D
Sbjct: 17 SNIPFRFRDPDLRQM----FGQFGKILDVEIIFNERGSKGFG---------FVTFENSAD 63
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A++A L+ GR + +
Sbjct: 64 ADRAREKLHGTVVEGRKIEVNNA 86
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 33.9 bits (77), Expect = 0.002
Identities = 9/83 (10%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L ++ +++++ + + ++ +++ +++F D
Sbjct: 20 GNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------GGPPFAFVEFEDPRD 65
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
AE AV + + G + E
Sbjct: 66 AEDAVYGRDGYDYDGYRLRVEFP 88
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.6 bits (76), Expect = 0.002
Identities = 9/60 (15%), Positives = 25/60 (41%)
Query: 74 VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSP 133
C++ + +++ ++ D ++ E A+ A+ + F G+ + +L P
Sbjct: 17 SNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 33.2 bits (75), Expect = 0.003
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
++ + T +++ + YI +ED
Sbjct: 7 TNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFA-----------YIDVTSKED 55
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A V LN G + ++S
Sbjct: 56 ARYCVEKLNGLKIEGYTLVTKVS 78
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 33.8 bits (76), Expect = 0.003
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L + E+QE + F V ++F +
Sbjct: 16 KNLPAGTLAAEIQETFSRFGSLGRVLL-----------------PEGGITAIVEFLEPLE 58
Query: 110 AEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140
A KA L F P+Y E +P+ F A
Sbjct: 59 ARKAFRHLAYSKFHHVPLYLEWAPIGVFGAA 89
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 33.6 bits (76), Expect = 0.003
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 13/86 (15%)
Query: 54 SNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKA 113
++ E + +++ F Y + + V I F A A
Sbjct: 16 DVFSESETRAKFESLFR--------TYDKDTTFQYFKSFK-----RVRINFSNPLSAADA 62
Query: 114 VNDLNNRWFGGRPVYAELSPVTDFRE 139
L+ F G+ + +
Sbjct: 63 RLRLHKTEFLGKEMKLYFAQTLHIGS 88
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.8 bits (74), Expect = 0.005
Identities = 11/63 (17%), Positives = 24/63 (38%)
Query: 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
+ + E + V D G ++ F +DA+ A+ +N + GR +
Sbjct: 20 QSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 79
Query: 130 ELS 132
+ +
Sbjct: 80 DQA 82
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 32.4 bits (73), Expect = 0.006
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 12/77 (15%)
Query: 51 HLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 110
L N T E+++ +++ F + ++ F E+
Sbjct: 6 GLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG-----------FVTFESEDIV 54
Query: 111 EKAVNDLNNRWFGGRPV 127
EK ++ + V
Sbjct: 55 EKVCE-IHFHEINNKMV 70
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.6 bits (74), Expect = 0.006
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 51 HLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 110
L T+++++E++ F E + D H G +++F E
Sbjct: 15 GLPWKTTEQDLKEYFSTFGEVL-----------MVQVKKDLKTGHSKGFGFVRFTEYETQ 63
Query: 111 EKAVNDLNNRWFGGRPVYAELS 132
K ++ + GR +L
Sbjct: 64 VKVMSQRH--MIDGRWCDCKLP 83
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 32.3 bits (73), Expect = 0.008
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 45 KSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 104
KS G+ I N+ + + F K E + ++ F
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG---------YGFVHF 55
Query: 105 RREEDAEKAVNDLNNRWFGGRPVYAELS 132
+E AE+A+ +N R V+
Sbjct: 56 ETQEAAERAIEKMNGMLLNDRKVFVGRF 83
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 31.5 bits (71), Expect = 0.011
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 55 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN-LGDHLVGNVYIKFRREEDAEKA 113
T E ++E++ ++GE++E V + L G ++ F + +K
Sbjct: 11 QTTQEGLREYFG------------QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 58
Query: 114 VNDLNNRWFGGRPV 127
+ + + +
Sbjct: 59 LA-QSRHELDSKTI 71
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 31.9 bits (72), Expect = 0.011
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+ S +TD+ M++ + +G+I E+ V G +++F E
Sbjct: 24 GGIASGLTDQLMRQTFS------------PFGQIMEIRVF-----PEKGYSFVRFSTHES 66
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A A+ +N G V
Sbjct: 67 AAHAIVSVNGTTIEGHVVKCYWG 89
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 31.1 bits (70), Expect = 0.013
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
L + T +++++++ F E ++ D + G ++ F+ E
Sbjct: 5 GGLSWDTTKKDLKDYFSKFGEV-----------VDCTLKLDPITGRSRGFGFVLFKESES 53
Query: 110 AEKAVNDLNNRWFGGRPV 127
+K + D G+ +
Sbjct: 54 VDKVM-DQKEHKLNGKVI 70
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.5 bits (71), Expect = 0.014
Identities = 8/82 (9%), Positives = 27/82 (32%), Gaps = 18/82 (21%)
Query: 51 HLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 110
++T++E++E + + + + V + ++ F ++ A
Sbjct: 12 RCTGDMTEDELREFFSQYGDVMDVFIPKPF----------------RAFAFVTFADDQIA 55
Query: 111 EKAVNDLNNRWFGGRPVYAELS 132
+ + G V+ +
Sbjct: 56 QSLCG--EDLIIKGISVHISNA 75
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 31.1 bits (70), Expect = 0.014
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 17/78 (21%)
Query: 55 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 114
++T ++ + F + D D ++ + + E A++AV
Sbjct: 14 DMTPTLLRGAFSPFGN-----------------IIDLSMDPPRNCAFVTYEKMESADQAV 56
Query: 115 NDLNNRWFGGRPVYAELS 132
+LN + ++
Sbjct: 57 AELNGTQVESVQLKVNIA 74
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 31.3 bits (70), Expect = 0.019
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L + +E + E F + +V +H G + +F +E
Sbjct: 14 RNLSFDSEEEALGEVLQQFGDLKYVRVV-----------LHPDTEHSKGCAFAQFMTQEA 62
Query: 110 AEKAVNDLNNRW------FGGRPVYAELS 132
A+K + + GR + +L+
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDLA 91
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 31.1 bits (70), Expect = 0.025
Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 17/85 (20%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L VT + + + + K+G + ++ +++
Sbjct: 13 ENLFYPVTLDVLHQIFS------------KFGTVLKIITFTKNNQ---FQALLQYADPVS 57
Query: 110 AEKAVNDLNNR--WFGGRPVYAELS 132
A+ A L+ + + + + S
Sbjct: 58 AQHAKLSLDGQNIYNACCTLRIDFS 82
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 30.5 bits (68), Expect = 0.027
Identities = 9/83 (10%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L + ++ + + + F + + + G +I F +
Sbjct: 4 GNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSK----------GYAFINFASFDA 53
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
++ A+ +N ++ RP+ +
Sbjct: 54 SDAAIEAMNGQYLCNRPITVSYA 76
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 30.9 bits (69), Expect = 0.031
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L VT+ ++ + F E + + G +I F +E
Sbjct: 24 KNLSPRVTERDLVSLFARFQEKKGP-----------PIQFRMMTGRMRGQAFITFPNKEI 72
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A +A++ +N G+ + E
Sbjct: 73 AWQALHLVNGYKLYGKILVIEFG 95
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 30.0 bits (67), Expect = 0.051
Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 17/77 (22%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
L N + + +D F ++ YI++ +
Sbjct: 23 GGLGPNTSLAALAREFDRFGSIRTIDHVKGDS-----------------FAYIQYESLDA 65
Query: 110 AEKAVNDLNNRWFGGRP 126
A+ A + GG
Sbjct: 66 AQAACAKMRGFPLGGPD 82
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 30.2 bits (67), Expect = 0.056
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+++ ++T ++ + + D + +G ++F+ E+D
Sbjct: 14 TNIPFSITKMDVLQFLEGIPVDENAVHV-----------LVDNNGQGLGQALVQFKNEDD 62
Query: 110 AEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140
A K+ L+ + GR + + + D RE
Sbjct: 63 ARKSE-RLHRKKLNGREAFVHVVTLEDMREI 92
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 30.2 bits (67), Expect = 0.056
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 64 HYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFG 123
++ + V + + + + G +++FR E D + A+ + ++ G
Sbjct: 27 PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL-CRHKQYMG 85
Query: 124 GRPVYAELSPVTDFREA 140
R + E
Sbjct: 86 NRFIQVHPITKKGMLEK 102
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 30.0 bits (67), Expect = 0.058
Identities = 8/84 (9%), Positives = 19/84 (22%), Gaps = 11/84 (13%)
Query: 51 HLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 110
+ EE+ E + + G ++++ A
Sbjct: 8 GIPKMKKREEILEEIAKVT---------EGVLDVIVYASAADKMKNRGFAFVEYESHRAA 58
Query: 111 EKAVNDLNNR--WFGGRPVYAELS 132
A L G + + +
Sbjct: 59 AMARRKLMPGRIQLWGHQIAVDWA 82
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 29.3 bits (65), Expect = 0.076
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L + + DE + F + + N C ++ F ++
Sbjct: 10 RNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCA---------FMVFENKDS 60
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
AE+A+ +N G R + L+
Sbjct: 61 AERAL-QMNRSLLGNREISVSLA 82
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 29.2 bits (65), Expect = 0.077
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 12/77 (15%)
Query: 51 HLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 110
L + +E+++E++ F E +E + C +I F+ EE
Sbjct: 6 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC-----------FITFKEEEPV 54
Query: 111 EKAVNDLNNRWFGGRPV 127
+K + + G
Sbjct: 55 KKIM-EKKYHNVGLSKC 70
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 29.3 bits (65), Expect = 0.091
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
+ E E + + D G ++ AE+A D N GR
Sbjct: 25 ASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 83
Query: 130 ELS 132
L+
Sbjct: 84 NLA 86
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 29.2 bits (65), Expect = 0.095
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 101 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132
++ F EDA +A+ LN + G P+ L+
Sbjct: 48 FVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 79
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 28.6 bits (63), Expect = 0.15
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 77 EDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPV 127
+D + E G +++ R+ED E A+ L++ F
Sbjct: 30 QDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEG 80
>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 259
Score = 29.8 bits (66), Expect = 0.18
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 99 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGF 155
+ + R E + +L + + V A + + E R
Sbjct: 35 VMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD-LGTEAGVQRLLSAVRELPRPEG 90
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 28.6 bits (63), Expect = 0.19
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 19/85 (22%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
L +V + ++ E + F +V ++F +
Sbjct: 21 RGLCESVVEADLVEALEKFGTICYVMMMPFKR-----------------QALVEFENIDS 63
Query: 110 AEKAVNDLNN--RWFGGRPVYAELS 132
A++ V + + G+ + S
Sbjct: 64 AKECVTFAADVPVYIAGQQAFFNYS 88
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.3 bits (62), Expect = 0.22
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 55 NVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAV 114
+ EE+ + + + G +++F +E AEKA+
Sbjct: 26 GCSKEEIVQFFSGLEIVPNGMTL-----------PVDFQGRSTGEAFVQFASQEIAEKAL 74
Query: 115 NDLNNRWFGGRPVYAELSPVTDFREA 140
+ G R + S + R +
Sbjct: 75 K-KHKERIGHRYIEIFKSSRAEVRTS 99
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 28.2 bits (62), Expect = 0.22
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNV----CDNLGDHLVGNVYIKFR 105
L + D E+ + E K+G+I ++ + + Y+ +
Sbjct: 14 VGLSQRLADPEVLKRP---------EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYI 64
Query: 106 REEDAEKAVNDLNNRWFGGRPV 127
R EDA +A+ +NN GR +
Sbjct: 65 RSEDALRAIQCVNNVVVDGRTL 86
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 34
Score = 26.6 bits (59), Expect = 0.27
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 3 CSFYFKIGACRHGDRCSRIHNK 24
C + IG C +G RC IHN
Sbjct: 11 CRTFHTIGFCPYGPRCHFIHNA 32
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.8 bits (63), Expect = 0.27
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 70 EDVFVECEDKYGEIEEMNVC-DNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128
E + ++YG+IE + + D G ++ F + +K V G
Sbjct: 111 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCE 169
Query: 129 AELS 132
+
Sbjct: 170 VRKA 173
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.28
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 3 CSFYFKIGACRHGDRCSRIHNK 24
C + + G C++G++C H
Sbjct: 9 CRPFEESGTCKYGEKCQFAHGF 30
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 40
Score = 26.6 bits (59), Expect = 0.28
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 3 CSFYFKIGACRHGDRCSRIHNK 24
C Y + G CR+G +C H
Sbjct: 12 CRTYSESGRCRYGAKCQFAHGL 33
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 27.4 bits (60), Expect = 0.31
Identities = 6/77 (7%), Positives = 22/77 (28%), Gaps = 12/77 (15%)
Query: 51 HLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 110
+ + + ++++++ + + + D G ++ F +
Sbjct: 9 GIKEDTEEHHLRDYFEQYGKIEV-----------IEIMTDRGSGKKRGFAFVTFDDHDSV 57
Query: 111 EKAVNDLNNRWFGGRPV 127
+K V G
Sbjct: 58 DKIVI-QKYHTVNGHNC 73
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.8 bits (61), Expect = 0.38
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 50 SHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREED 109
+L +VT+E ++E + + Y +F +
Sbjct: 21 GNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFG-----------YAEFEDLDS 69
Query: 110 AEKAVNDLNNRWFGGRPVYAELS 132
A++ LN G + + +++
Sbjct: 70 LLSALS-LNEESLGNKRIRVDVA 91
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.8 bits (61), Expect = 0.38
Identities = 7/70 (10%), Positives = 21/70 (30%), Gaps = 17/70 (24%)
Query: 51 HLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDA 110
L + V+ ++ + + + ++R E++
Sbjct: 27 GLGNGVSRNQLLPVLEKCGLVDALLMPPNKP-----------------YSFARYRTTEES 69
Query: 111 EKAVNDLNNR 120
++A LN +
Sbjct: 70 KRAYVTLNGK 79
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 27.2 bits (59), Expect = 0.48
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 41 QNSAKSADGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNV 100
+ S + + I N+ + + ++ V D
Sbjct: 6 EGSESTTPFNLFIGNLNPNKSVAELKVAIS--------ELFAKNDLAVVDVRTGTNRKFG 57
Query: 101 YIKFRREEDAEKAVNDLNNRWFGGRPVYAELS 132
Y+ F ED EKA+ L G + E
Sbjct: 58 YVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 27.4 bits (60), Expect = 0.57
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 69 FEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128
E V + + + + N ++ A+ A++ LN G+P+
Sbjct: 12 PERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIR 71
Query: 129 AELS 132
LS
Sbjct: 72 ITLS 75
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 27.0 bits (59), Expect = 0.70
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 70 EDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYA 129
E+ + G ++F EDA A+ + R V
Sbjct: 29 ENDIYNFFSPLNPMRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHRYVEL 86
Query: 130 ELS 132
L+
Sbjct: 87 FLN 89
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 27.5 bits (60), Expect = 0.88
Identities = 9/60 (15%), Positives = 16/60 (26%)
Query: 98 GNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCN 157
G+V + R + AV L R ++ + R + N
Sbjct: 29 GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNN 88
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.3 bits (57), Expect = 0.90
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 74 VECEDKYGEIEEMNVCDNLGDHLVGN-VYIKFRREEDAEKAVN--DLNNRWFGGRPVYAE 130
V + N+ N +++ EE A VN +P+Y +
Sbjct: 20 VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 79
Query: 131 LS 132
S
Sbjct: 80 YS 81
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), II [TaxId: 4076]}
Length = 259
Score = 26.1 bits (57), Expect = 2.8
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 99 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREA 140
+VY R +++ + ++ F +LS ++ +E
Sbjct: 34 SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQEL 75
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 25.7 bits (56), Expect = 3.7
Identities = 4/38 (10%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 99 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136
V R + E+ + + + G + +++
Sbjct: 36 KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCD-LSN 72
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 25.8 bits (56), Expect = 3.8
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 99 NVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTD 136
V I R E+ E+ + + A ++ VT+
Sbjct: 30 QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE 67
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing
protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
9606]}
Length = 29
Score = 22.9 bits (49), Expect = 4.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 138 REACCRQYEMGECTRSGFCNFMH 160
+ C+ Y G C R+ C +MH
Sbjct: 5 KRELCKFYITGFCARAENCPYMH 27
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 24.0 bits (51), Expect = 5.0
Identities = 7/67 (10%), Positives = 15/67 (22%), Gaps = 1/67 (1%)
Query: 67 NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWF-GGR 125
N E+ L + +++F E + A L
Sbjct: 15 NLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTH 74
Query: 126 PVYAELS 132
+ +
Sbjct: 75 AMKITFA 81
>d1hy9a_ g.3.17.1 (A:) Satiety factor CART (cocaine and amphetamine
regulated transcript) {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 22.8 bits (49), Expect = 6.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 133 PVTDFREACC-----RQYEMGECTRSGFCNFMHLK 162
P+ D E C R ++ +C R CN LK
Sbjct: 5 PMCDAGEQCAVRKGARIGKLCDCPRGTSCNSFLLK 39
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 24.1 bits (51), Expect = 6.8
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 74 VECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVY 128
+D + E + G ++F R+ED AV L+N F
Sbjct: 12 GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 66
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 167
Score = 24.3 bits (53), Expect = 8.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 48 DGSHLISNVTDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDN 91
D S LI+N E+M +H F F+E DK EI EM + N
Sbjct: 112 DISFLITNFHTEQMYKHKLVDFVIHFMEEIDK--EISEMKLSVN 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.426
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 756,890
Number of extensions: 35363
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 95
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)