BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12247
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MKFQY E++S E+R GE + R +P+ VI+E++P A L + + Y+V ++TVG F
Sbjct: 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 68
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
++L+RK++ LRPE+A FFF+ ++I P +T M +L Q D+D +Y+ +SD N++
Sbjct: 69 YFLIRKRIHLRPEDALFFFVNNVIPPTSAT-MGSLYQEHHDEDFFLYIAFSDENVY 123
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
KFQY E + E R K GE + + +P+ VI+E++P A +P + + Y+V ++TVG F
Sbjct: 5 FKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 64
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNI 115
++L+RK++ LRPE+A FFF+ + I P +T M L + ++D +Y+ YSD ++
Sbjct: 65 YFLIRKRIHLRPEDALFFFVNNTIPPTSAT-MGQLYEDNHEEDYFLYVAYSDESV 118
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 3 FQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFY 62
FQY E + E R K GE + + +P+ VI+E++P A +P + + Y+V ++TVG F++
Sbjct: 2 FQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYF 61
Query: 63 LLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSD 112
L+RK++ LRPE+A FFF+ + I P +T M L + ++D +Y+ YSD
Sbjct: 62 LIRKRIHLRPEDALFFFVNNTIPPTSAT-MGQLYEDNHEEDYFLYVAYSD 110
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MKF Y E++ E+R GE + + +P+ VI+E++P A + + + Y+V ++TVG F
Sbjct: 3 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 62
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
++L+RK++ LR E+A FFF+ ++I P +T M L Q ++D +Y+ YSD +++
Sbjct: 63 YFLIRKRIHLRAEDALFFFVNNVIPPTSAT-MGQLYQEHHEEDFFLYIAYSDESVY 117
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MKF Y E++ E+R GE + + +P+ VI+E++P A + + + Y+V ++TVG F
Sbjct: 3 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 62
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
++L+RK++ LR E+A FFF+ ++I P +T M L Q ++D +Y+ YSD +++
Sbjct: 63 YFLIRKRIHLRAEDALFFFVNNVIPPTSAT-MGQLYQEHHEEDFFLYIAYSDESVY 117
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MKF Y E++ E+R GE + + +P+ VI+E++P A + + + Y+V ++TVG F
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
++L+RK++ LR E+A FFF+ ++I P +T M L Q ++D +Y+ YSD +++
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSAT-MGQLYQEHHEEDFFLYIAYSDESVY 115
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MK + +Y E+R E +A PN VI E++ + +P++ + Y+V ++TVG F
Sbjct: 2 MKSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 61
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
Y++RK++ L PE+A F F+ + P + M + Q DKDG +Y+ YS N F
Sbjct: 62 VYVIRKRIMLPPEKAIFIFVNDTL-PPTAALMSAIYQEHKDKDGFLYVTYSGENTF 116
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MK + +Y E+R E +A PN VI E++ + +P++ + Y+V ++TVG F
Sbjct: 4 MKSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 63
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
Y++RK++ L PE+A F F+ + P + M + Q DKDG +Y+ YS N F
Sbjct: 64 VYVIRKRIMLPPEKAIFIFVNDTL-PPTAALMSAIYQEHKDKDGFLYVTYSGENTF 118
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MK + +Y E+R E +A PN VI E++ + +P++ + Y+V ++TVG F
Sbjct: 1 MKSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 60
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
Y++RK++ L PE+A F F+ + P + M + Q DKDG +Y+ YS N F
Sbjct: 61 VYVIRKRIMLPPEKAIFIFVNDTL-PPTAALMSAIYQEHKDKDGFLYVTYSGENTF 115
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MK + +Y E+R E +A N VI E++ + +P++ + Y+V ++TVG F
Sbjct: 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 62
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
Y++RK++ L PE+A F F+ + P + M + Q DKDG +Y+ YS N F
Sbjct: 63 VYVIRKRIMLPPEKAIFIFVNDTL-PPTAALMSAIYQEHKDKDGFLYVTYSGENTF 117
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MK + +Y E+R E +A N VI E++ + +P++ + Y+V ++TVG F
Sbjct: 4 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 63
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
Y++RK++ L PE+A F F+ + P + M + Q DKDG +Y+ YS N F
Sbjct: 64 VYVIRKRIMLPPEKAIFIFVNDTL-PPTAALMSAIYQEHKDKDGFLYVTYSGENTF 118
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MK + +Y E+R E +A N VI E++ + +P++ + Y+V ++TVG F
Sbjct: 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 62
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
Y++RK++ L PE+A F F+ + P + M + Q DKDG +Y+ YS N F
Sbjct: 63 VYVIRKRIMLPPEKAIFIFVNDTL-PPTAALMSAIYQEHKDKDGFLYVTYSGENTF 117
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
MK+ + E +SLE R + +P+ VI+E+ + + + + Y+V ++TV F
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
+++RK++ L E+A F F++ VP S M L ++ D+DG +Y+ YS N F
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKT-VPQSSLTMGQLYEKEKDEDGFLYVAYSGENTF 115
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 4 QYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYL 63
+Y ++ E R + HP+ +I E+ ++ + ++ R ++V ++TVG F +
Sbjct: 7 KYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSV 66
Query: 64 LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
LRK++ L E A F + ++P+ S +M + ++ D+DG +YM YS F
Sbjct: 67 LRKRVQLEAESALFVYTNDTVLPS-SAQMADIYSKYKDEDGFLYMKYSGEATF 118
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 5 YTEKYSLEERIKIGENLARNHPNCAFVILERSP-SALLPQMPRSNYVVAYEMTVGHFFYL 63
+ ++ SL R + + PN V++ER P LP + ++ ++V E+T+ F +
Sbjct: 15 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 74
Query: 64 LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
+R +M LR EA + + + + + S M + + + D+DG +YM Y+ F
Sbjct: 75 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF 127
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 7 EKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRK 66
++ S E R+ + +PN V++ER+ + LP + + ++V M VG F ++L +
Sbjct: 10 DEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGEFKFILHQ 69
Query: 67 ---------KMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYS 111
M L E + F+ + IVP M+ L + + D+DG +YM YS
Sbjct: 70 HINQSAYGSNMKLFRERTIYLFVNN-IVPKTGLLMQDLYEMYKDEDGYLYMEYS 122
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 5 YTEKYSLEERIKIGENLARNHPNCAFVILER-SPSALLPQMPRSNYVVAYEMTVGHFFYL 63
+ ++ S +R K + + HP+ VI+ER LP + ++ ++V + + +
Sbjct: 8 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 67
Query: 64 LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
+R+++ L P +A F + + + ST + + ++ D+DG +YMVY+ F
Sbjct: 68 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETF 120
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 5 YTEKYSLEERIKIGENLARNHPNCAFVILER-SPSALLPQMPRSNYVVAYEMTVGHFFYL 63
+ ++ S E+R++ + HP VI+ER LP + ++ ++V + + +
Sbjct: 8 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 67
Query: 64 LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
+R+++ L +A F + + + ST + + + D+DG +YMVY+ F
Sbjct: 68 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETF 120
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 5 YTEKYSLEERIKIGENLARNHPNCAFVILER-SPSALLPQMPRSNYVVAYEMTVGHFFYL 63
+ ++ S E+R++ + HP VI+ER LP + ++ ++V + + +
Sbjct: 12 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 71
Query: 64 LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
+R+++ L +A F + + + ST + + + D+DG +YMVY+ F
Sbjct: 72 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETF 124
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 5 YTEKYSLEERIKIGENLARNHPNCAFVILER-SPSALLPQMPRSNYVVAYEMTVGHFFYL 63
+ ++ S E+R++ + HP VI+ER LP + ++ ++V + + +
Sbjct: 12 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 71
Query: 64 LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
+R+++ L +A F + + + ST + + + D+DG +YMVY+ F
Sbjct: 72 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETF 124
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 5 YTEKYSLEERIKIGENLARNHPNCAFVILER-SPSALLPQMPRSNYVVAYEMTVGHFFYL 63
+ ++ + E+R++ + HP VI+ER LP + ++ ++V + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 64 LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
+R+++ L +A F + + + ST + + + D+DG +YMVY+ F
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 119
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 5 YTEKYSLEERIKIGENLARNHPNCAFVILER-SPSALLPQMPRSNYVVAYEMTVGHFFYL 63
+ ++ + E+R++ + HP VI+ER LP + ++ ++V + + +
Sbjct: 12 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 71
Query: 64 LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
+R+++ L +A F + + + ST + + + D+DG +YMVY+ F
Sbjct: 72 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 124
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic
Acid
pdb|3E7F|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic
Acid
Length = 265
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 63 LLRKKMALRPEEACFFFIESMIVPADST 90
LLR+K ALR FF + +VPADST
Sbjct: 61 LLREKRALR-----FFMGDERMVPADST 83
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of
6- Phosphogluconolactonase From Trypanosoma Brucei
pdb|2J0E|B Chain B, Three Dimensional Structure And Catalytic Mechanism Of
6- Phosphogluconolactonase From Trypanosoma Brucei
pdb|3EB9|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
pdb|3EB9|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
Length = 266
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 63 LLRKKMALRPEEACFFFIESMIVPADST 90
LLR+K ALR FF + +VPADST
Sbjct: 62 LLREKRALR-----FFMGDERMVPADST 84
>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha
(Mrck Alpha)
Length = 437
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 63 LLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMV 109
L + +M R E ACF ++V DS + TL F D + L Y+V
Sbjct: 107 LNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNL-YLV 152
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
Length = 543
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 43 QMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADK 102
++P +A +M +G R +A +P +ESMI A TR ET A
Sbjct: 312 EIPAEKVFLAQKMMIG------RCNLAGKPVVCATQMLESMITKARPTRAETSDVANAVL 365
Query: 103 DG 104
DG
Sbjct: 366 DG 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,224,817
Number of Sequences: 62578
Number of extensions: 109278
Number of successful extensions: 276
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 27
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)