Query psy12247
Match_columns 119
No_of_seqs 110 out of 355
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:32:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 1.5E-55 5.2E-60 309.6 14.0 116 1-117 3-118 (118)
2 3m95_A Autophagy related prote 100.0 8.6E-56 2.9E-60 313.4 12.6 117 1-118 9-125 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 5.1E-54 1.7E-58 302.2 12.9 114 3-117 6-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 6.8E-53 2.3E-57 295.6 12.7 117 1-118 1-117 (117)
5 2zjd_A Microtubule-associated 100.0 1E-52 3.5E-57 299.4 11.5 116 1-118 9-126 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 5.4E-48 1.9E-52 268.1 12.2 110 2-112 1-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 1.4E-36 4.9E-41 204.6 10.1 87 30-117 5-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 1.2E-35 4.3E-40 201.7 10.0 86 26-117 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 2.8E-34 9.6E-39 193.4 8.6 83 31-117 9-91 (91)
10 2dyo_A Autophagy protein 5; ub 95.9 0.017 5.8E-07 45.4 6.2 98 9-111 183-285 (297)
11 4gdk_B Autophagy protein 5; pr 95.5 0.045 1.5E-06 42.6 7.4 95 9-111 160-270 (275)
12 3vqi_A ATG5; autophagy, E3-lik 95.0 0.068 2.3E-06 41.5 6.8 82 17-109 187-272 (274)
13 3goe_A DNA repair protein RAD6 93.9 0.19 6.4E-06 32.5 6.0 48 45-93 20-67 (82)
14 1oey_A P67-PHOX, neutrophil cy 89.5 0.91 3.1E-05 29.2 5.5 58 50-109 19-79 (83)
15 1q1o_A Cell division control p 86.8 0.26 9E-06 32.8 1.6 27 47-73 25-51 (98)
16 2uyz_B Small ubiquitin-related 86.7 2.1 7.3E-05 25.7 5.7 59 47-111 16-75 (79)
17 3a4r_A Nfatc2-interacting prot 85.8 3.1 0.00011 25.7 6.2 63 26-95 5-67 (79)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 84.9 3.4 0.00011 25.2 6.1 75 26-112 5-80 (87)
19 1wy8_A NP95-like ring finger p 83.6 3.2 0.00011 25.5 5.6 56 51-111 26-81 (89)
20 1uh6_A Ubiquitin-like 5; beta- 82.5 4.7 0.00016 26.5 6.3 59 48-111 42-100 (100)
21 3mtn_B UBA80, ubcep1, ubiquiti 82.1 1.5 5E-05 26.5 3.5 60 47-111 16-75 (85)
22 1we7_A SF3A1 protein; structur 82.0 8.3 0.00029 25.1 8.9 85 21-111 18-107 (115)
23 1ndd_A NEDD8, protein (ubiquit 81.4 1.9 6.5E-05 25.3 3.7 58 48-111 14-72 (76)
24 3n3k_B Ubiquitin; hydrolase, p 80.9 1.5 5.2E-05 26.5 3.2 60 48-112 17-76 (85)
25 1wyw_B Ubiquitin-like protein 80.8 4.7 0.00016 25.5 5.7 75 26-111 19-93 (97)
26 3a9j_A Ubiquitin; protein comp 80.6 2 6.8E-05 25.2 3.6 58 48-111 14-72 (76)
27 2dzi_A Ubiquitin-like protein 80.0 1.9 6.6E-05 25.8 3.5 60 27-94 6-65 (81)
28 1wm3_A Ubiquitin-like protein 79.9 2.4 8.1E-05 25.6 3.9 49 45-95 12-60 (72)
29 2bwf_A Ubiquitin-like protein 78.7 2.3 7.7E-05 25.2 3.4 57 48-110 17-74 (77)
30 2hj8_A Interferon-induced 17 k 78.4 4 0.00014 25.2 4.7 60 48-112 18-77 (88)
31 3plu_A Ubiquitin-like modifier 78.2 7 0.00024 25.4 5.9 81 18-110 11-92 (93)
32 1wx7_A Ubiquilin 3; ubiquitin- 77.6 7.3 0.00025 24.9 6.0 73 27-112 16-89 (106)
33 2l7r_A Ubiquitin-like protein 77.3 4.8 0.00017 25.3 4.9 71 26-110 17-88 (93)
34 3phx_B Ubiquitin-like protein 77.2 3.4 0.00012 24.7 4.0 58 48-110 18-75 (79)
35 1yqb_A Ubiquilin 3; structural 76.7 12 0.00041 23.8 7.6 74 26-112 20-94 (100)
36 2k8h_A Small ubiquitin protein 76.6 6.2 0.00021 26.2 5.5 62 26-95 24-85 (110)
37 2io0_B Small ubiquitin-related 76.6 3.3 0.00011 26.5 4.0 62 26-95 3-64 (91)
38 1we6_A Splicing factor, putati 76.2 11 0.00038 24.3 6.6 83 20-111 19-103 (111)
39 2kan_A Uncharacterized protein 76.1 6.2 0.00021 24.9 5.2 75 26-112 13-88 (94)
40 2kk8_A Uncharacterized protein 76.0 7.1 0.00024 24.1 5.4 58 49-110 25-82 (84)
41 3k9o_B Ubiquitin, UBB+1; E2-25 75.9 3.1 0.0001 25.9 3.6 60 48-112 15-74 (96)
42 4dwf_A HLA-B-associated transc 75.4 3.8 0.00013 25.2 3.9 75 26-112 3-77 (90)
43 3dbh_I NEDD8; cell cycle, acti 75.0 3.1 0.0001 25.3 3.4 58 48-110 26-83 (88)
44 1yx5_B Ubiquitin; proteasome, 74.4 2.8 9.5E-05 26.4 3.2 59 48-112 14-73 (98)
45 4eew_A Large proline-rich prot 72.8 4.8 0.00017 24.6 3.9 62 25-94 14-75 (88)
46 1ip9_A BEM1 protein; ubiquitin 72.8 9.1 0.00031 24.7 5.3 30 49-79 26-55 (85)
47 2kd0_A LRR repeats and ubiquit 72.7 3.3 0.00011 25.7 3.1 56 49-110 26-82 (85)
48 2jxx_A Nfatc2-interacting prot 72.4 13 0.00046 24.1 6.2 64 25-95 22-85 (97)
49 2faz_A Ubiquitin-like containi 71.3 4.6 0.00016 24.0 3.5 56 49-110 18-75 (78)
50 1wx8_A Riken cDNA 4931431F19; 71.2 9.4 0.00032 23.7 5.1 73 26-111 15-88 (96)
51 3v6c_B Ubiquitin; structural g 71.2 4.4 0.00015 25.1 3.5 56 48-109 31-87 (91)
52 1vd2_A Protein kinase C, IOTA 70.5 18 0.00063 23.2 6.8 62 47-108 18-86 (89)
53 1wju_A NEDD8 ultimate buster-1 70.4 8.7 0.0003 25.2 4.9 45 48-94 33-77 (100)
54 1sif_A Ubiquitin; hydrophobic 70.3 4.4 0.00015 25.1 3.3 58 48-111 23-81 (88)
55 4fbj_B NEDD8; effector-HOST ta 70.1 4.1 0.00014 25.3 3.1 59 48-111 14-72 (88)
56 1wgd_A Homocysteine-responsive 70.1 8.8 0.0003 23.8 4.8 76 27-111 6-85 (93)
57 4hcn_B Polyubiquitin, ubiquiti 68.1 5.1 0.00017 25.3 3.3 73 26-110 20-93 (98)
58 2lxa_A Ubiquitin-like protein 68.0 15 0.0005 23.1 5.5 43 51-95 20-63 (87)
59 2klc_A Ubiquilin-1; ubiquitin- 67.3 4.5 0.00015 25.9 2.9 74 26-112 23-97 (101)
60 2d07_B Ubiquitin-like protein 67.1 5.9 0.0002 25.2 3.5 62 26-95 15-76 (93)
61 2ojr_A Ubiquitin; lanthide-bin 66.8 8.8 0.0003 24.8 4.4 58 48-111 49-107 (111)
62 3vdz_A Ubiquitin-40S ribosomal 66.5 6.3 0.00021 25.6 3.6 58 48-110 49-106 (111)
63 1x1m_A Ubiquitin-like protein 66.3 23 0.00078 22.6 6.4 55 54-113 44-101 (107)
64 1ttn_A DC-UBP, dendritic cell- 66.2 20 0.00068 22.8 6.0 60 48-113 37-97 (106)
65 3m63_B Ubiquitin domain-contai 65.2 5 0.00017 25.8 2.9 67 20-95 20-86 (101)
66 2eke_C Ubiquitin-like protein 64.4 6.4 0.00022 26.0 3.3 49 45-95 41-89 (106)
67 1v5t_A 8430435I17RIK protein; 64.3 14 0.00048 22.9 4.9 59 50-113 23-84 (90)
68 1v5o_A 1700011N24RIK protein; 62.2 11 0.00039 23.9 4.2 57 49-110 26-83 (102)
69 2kdi_A Ubiquitin, vacuolar pro 62.2 5.9 0.0002 26.0 2.8 58 49-112 24-82 (114)
70 1wxv_A BAG-family molecular ch 62.1 19 0.00064 22.1 5.2 76 27-114 6-87 (92)
71 4dbg_A Ranbp-type and C3HC4-ty 61.8 19 0.00065 23.7 5.3 60 29-94 25-84 (105)
72 1j8c_A Ubiquitin-like protein 61.5 10 0.00034 25.4 3.9 58 48-111 45-103 (125)
73 3b08_A Polyubiquitin-C, ubiqui 61.1 29 0.00098 22.7 6.3 58 48-111 90-148 (152)
74 1j0g_A Hypothetical protein 18 60.5 31 0.0011 22.2 6.1 59 42-101 21-79 (92)
75 3b1l_X E3 ubiquitin-protein li 64.2 1.9 6.4E-05 25.6 0.0 45 49-95 15-59 (76)
76 3m62_B UV excision repair prot 59.8 5.4 0.00019 25.7 2.3 60 49-113 16-75 (106)
77 1yfb_A Transition state regula 59.7 7.7 0.00026 23.0 2.8 20 63-82 29-48 (59)
78 2wyq_A HHR23A, UV excision rep 59.0 26 0.00088 20.8 7.8 77 26-114 3-83 (85)
79 1mvf_D MAZE protein, PEMI-like 58.6 7.7 0.00026 23.9 2.7 39 63-101 20-64 (82)
80 2fnj_B Transcription elongatio 56.7 22 0.00076 23.9 5.0 63 50-116 17-85 (118)
81 2l32_A Small archaeal modifier 56.5 9.1 0.00031 23.5 2.8 36 49-89 15-50 (74)
82 1wjn_A Tubulin-folding protein 56.4 14 0.00047 23.2 3.8 32 49-80 27-59 (97)
83 2l66_A SSO7C4, transcriptional 56.1 10 0.00035 21.5 2.8 21 62-82 18-38 (53)
84 2kdb_A Homocysteine-responsive 55.8 14 0.00048 23.8 3.8 67 26-97 21-88 (99)
85 3b08_A Polyubiquitin-C, ubiqui 55.6 10 0.00034 25.1 3.2 58 48-111 14-72 (152)
86 1uel_A HHR23B, UV excision rep 54.1 15 0.00052 22.9 3.7 60 48-113 14-77 (95)
87 1v86_A DNA segment, CHR 7, way 53.0 12 0.00042 23.5 3.1 44 49-95 31-74 (95)
88 2kvr_A Ubiquitin carboxyl-term 52.7 13 0.00043 25.4 3.3 55 47-101 58-119 (130)
89 3rt3_B Ubiquitin-like protein 52.4 13 0.00045 25.1 3.4 58 49-111 17-76 (159)
90 2i1s_A Hypothetical protein; m 52.0 36 0.0012 24.1 5.8 29 46-74 23-51 (188)
91 1v2y_A 3300001G02RIK protein; 52.0 7.9 0.00027 25.5 2.1 64 50-117 23-101 (105)
92 2daf_A FLJ35834 protein; hypot 51.8 28 0.00097 23.6 4.9 58 49-112 31-89 (118)
93 3kyd_D Small ubiquitin-related 51.1 20 0.00068 24.1 4.0 62 26-95 38-99 (115)
94 2kc2_A Talin-1, F1; FERM, adhe 50.7 29 0.00098 23.7 4.8 41 40-81 17-57 (128)
95 2io1_B Small ubiquitin-related 50.4 21 0.00071 22.7 3.9 62 26-95 5-66 (94)
96 2dzm_A FAS-associated factor 1 48.2 26 0.0009 22.6 4.2 60 49-113 23-83 (100)
97 3rt3_B Ubiquitin-like protein 47.8 25 0.00086 23.6 4.3 59 48-111 95-153 (159)
98 1pqs_A Cell division control p 47.6 12 0.00041 23.4 2.3 23 49-71 6-28 (77)
99 3u5e_m 60S ribosomal protein L 46.1 4.2 0.00015 27.1 0.0 45 49-95 15-59 (128)
100 3u30_A Ubiquitin, linear DI-ub 45.1 25 0.00084 24.1 3.9 58 48-111 34-92 (172)
101 3l0w_B Monoubiquitinated proli 41.4 33 0.0011 23.9 4.1 59 48-111 14-72 (169)
102 1v6e_A Cytoskeleton-associated 41.2 62 0.0021 20.0 6.0 47 27-78 6-53 (95)
103 2e5i_A Heterogeneous nuclear r 39.8 23 0.00078 23.6 2.9 42 71-112 21-71 (124)
104 1x5p_A Negative elongation fac 39.1 27 0.00093 21.1 3.1 34 78-113 18-59 (97)
105 3u5c_f 40S ribosomal protein S 38.9 6.4 0.00022 27.5 0.0 45 49-95 15-59 (152)
106 1f0z_A THis protein; ubiquitin 37.0 54 0.0019 18.9 4.0 35 48-87 9-43 (66)
107 2bz2_A Negative elongation fac 36.7 23 0.00078 23.0 2.5 36 77-114 41-84 (121)
108 1wz0_A Ubiquitin-like protein 36.2 47 0.0016 21.5 3.9 62 26-95 22-83 (104)
109 1ryj_A Unknown; beta/alpha pro 36.0 67 0.0023 18.8 4.9 35 49-88 18-52 (70)
110 4a20_A Ubiquitin-like protein 35.2 30 0.001 22.1 2.9 72 26-111 17-95 (98)
111 3q3f_A Ribonuclease/ubiquitin 34.9 29 0.00099 25.0 3.0 57 48-110 119-176 (189)
112 3tuo_A DNA-binding protein SAT 34.8 65 0.0022 21.4 4.4 69 28-98 7-93 (105)
113 2kjr_A CG11242; UBL, ubiquitin 34.5 86 0.0029 19.7 8.2 65 26-94 13-81 (95)
114 2ylm_A Ubiquitin carboxyl-term 33.6 41 0.0014 27.8 4.1 59 49-109 151-215 (530)
115 4a3p_A Ubiquitin carboxyl-term 33.4 1.3E+02 0.0043 21.7 6.3 61 48-111 143-208 (217)
116 4ajy_B Transcription elongatio 32.8 44 0.0015 22.5 3.4 61 51-117 18-86 (118)
117 2diu_A KIAA0430 protein; struc 32.4 62 0.0021 21.0 4.0 43 70-114 5-57 (96)
118 3tix_A Ubiquitin-like protein 32.4 32 0.0011 25.5 2.9 61 26-95 55-115 (207)
119 3po0_A Small archaeal modifier 32.4 29 0.001 21.1 2.4 39 48-86 21-69 (89)
120 3gs2_A E3 ubiquitin-protein li 31.7 1.2E+02 0.004 20.3 9.3 85 28-112 3-109 (111)
121 2pjh_A Protein NPL4, nuclear p 31.2 25 0.00086 21.6 1.9 28 51-78 20-48 (80)
122 3rpf_C Molybdopterin convertin 30.8 23 0.0008 21.0 1.6 39 53-91 19-58 (74)
123 3nyi_A FAT acid-binding protei 30.1 86 0.0029 23.7 5.1 59 45-113 35-95 (297)
124 2ylm_A Ubiquitin carboxyl-term 30.1 1.2E+02 0.0042 24.9 6.4 68 28-98 239-313 (530)
125 2al3_A TUG long isoform; TUG U 30.1 46 0.0016 21.4 3.1 42 42-84 17-58 (90)
126 3d2w_A TAR DNA-binding protein 29.7 49 0.0017 19.9 3.1 38 77-114 13-59 (89)
127 1sjr_A Polypyrimidine tract-bi 29.3 81 0.0028 22.1 4.5 43 71-113 42-94 (164)
128 1tyg_B YJBS; alpha beta barrel 29.3 51 0.0017 20.7 3.1 37 46-87 27-64 (87)
129 3zzy_A Polypyrimidine tract-bi 28.9 39 0.0013 22.7 2.7 34 68-101 21-54 (130)
130 2w1t_A Spovt, stage V sporulat 28.9 41 0.0014 24.2 2.9 19 63-81 21-39 (178)
131 2kzr_A Ubiquitin thioesterase 28.6 46 0.0016 20.1 2.8 58 51-112 17-78 (86)
132 4b6w_A Tubulin-specific chaper 28.5 62 0.0021 19.9 3.4 31 49-79 19-50 (86)
133 3ai5_A Yeast enhanced green fl 28.1 93 0.0032 24.1 5.0 55 49-109 248-303 (307)
134 3beg_B Splicing factor, argini 27.7 53 0.0018 20.7 3.1 37 78-114 19-62 (115)
135 4efo_A Serine/threonine-protei 27.6 1.1E+02 0.0036 19.7 4.5 39 46-84 25-63 (94)
136 3pge_A SUMO-modified prolifera 27.4 54 0.0018 23.9 3.4 48 45-94 39-86 (200)
137 2kj6_A Tubulin folding cofacto 27.1 1.2E+02 0.0041 19.1 8.4 52 26-81 12-63 (97)
138 1ug8_A Poly(A)-specific ribonu 26.6 43 0.0015 21.5 2.4 19 13-31 41-59 (87)
139 2eki_A DRG 1, developmentally- 26.0 1.1E+02 0.0036 19.8 4.3 44 36-82 17-60 (93)
140 1fm0_D Molybdopterin convertin 25.9 40 0.0014 19.9 2.1 34 52-86 23-61 (81)
141 1vjk_A Molybdopterin convertin 25.6 41 0.0014 21.1 2.2 39 48-86 30-78 (98)
142 3fdj_A DEGV family protein; GU 25.5 85 0.0029 23.5 4.3 53 47-113 34-86 (278)
143 1x4c_A Splicing factor, argini 25.5 81 0.0028 19.4 3.6 10 104-113 51-60 (108)
144 3hvz_A Uncharacterized protein 25.3 1.1E+02 0.0037 18.7 4.1 38 47-87 16-53 (78)
145 1pzx_A Hypothetical protein AP 24.2 95 0.0033 23.3 4.4 57 45-113 35-92 (289)
146 2cqh_A IGF-II mRNA-binding pro 24.2 49 0.0017 19.6 2.3 16 51-66 16-31 (93)
147 3u52_E Phenol hydroxylase comp 23.9 69 0.0023 21.7 3.1 73 21-95 16-96 (119)
148 1wgh_A Ubiquitin-like 3, HCG-1 23.5 1.1E+02 0.0037 20.2 4.1 49 45-94 27-82 (116)
149 1wia_A Hypothetical ubiquitin- 23.5 43 0.0015 20.5 2.0 70 27-111 6-77 (95)
150 2dt8_A DEGV family protein; fa 23.3 87 0.003 23.5 4.0 58 45-113 33-91 (280)
151 2glw_A PHS018, 92AA long hypot 23.3 61 0.0021 20.6 2.7 23 62-84 66-88 (92)
152 3s5o_A 4-hydroxy-2-oxoglutarat 23.3 75 0.0026 24.1 3.7 28 9-36 64-91 (307)
153 1wf9_A NPL4 family protein; be 22.5 75 0.0026 20.1 3.1 60 49-114 21-97 (107)
154 2div_A TRNA selenocysteine ass 22.4 85 0.0029 18.7 3.2 10 104-113 53-62 (99)
155 1wf0_A TDP-43, TAR DNA-binding 22.4 34 0.0012 20.2 1.3 12 103-114 42-53 (88)
156 3qij_A Protein 4.1; cytoskelet 21.8 1.8E+02 0.0061 21.7 5.5 52 22-79 11-64 (296)
157 2g1e_A Hypothetical protein TA 21.5 1.1E+02 0.0037 18.2 3.6 39 48-86 18-66 (90)
158 2k5p_A THis protein, thiamine- 21.5 79 0.0027 19.2 2.9 36 48-88 9-47 (78)
159 1wgg_A Ubiquitin carboxyl-term 21.3 83 0.0028 19.6 3.0 58 49-113 22-80 (96)
160 2e5j_A Methenyltetrahydrofolat 20.9 1E+02 0.0036 18.3 3.4 17 51-67 27-43 (97)
161 3l21_A DHDPS, dihydrodipicolin 20.7 64 0.0022 24.5 2.8 100 9-113 65-179 (304)
162 1se9_A Ubiquitin family; ubiqu 20.6 1.1E+02 0.0038 20.6 3.7 45 49-94 32-82 (126)
163 1t0y_A Tubulin folding cofacto 20.4 1.8E+02 0.0062 18.7 7.4 47 27-78 5-52 (122)
164 2gow_A HCG-1 protein, ubiquiti 20.2 59 0.002 21.7 2.2 49 45-94 28-83 (125)
165 2yxg_A DHDPS, dihydrodipicolin 20.0 68 0.0023 24.0 2.8 101 9-113 50-165 (289)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=1.5e-55 Score=309.59 Aligned_cols=116 Identities=34% Similarity=0.641 Sum_probs=111.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEE
Q psy12247 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFI 80 (119)
Q Consensus 1 m~~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V 80 (119)
|+++||++||||+|++|+++||+|||++||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeecCCcCchHHHHHhHhcCCCCeEEEEeccccccc
Q psy12247 81 ESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFV 117 (119)
Q Consensus 81 n~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~~fG 117 (119)
||. +|++|++||+||++|||+||||||+||+++|||
T Consensus 83 n~~-~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 83 NDT-LPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TTB-CCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred CCc-cCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 996 599999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=8.6e-56 Score=313.42 Aligned_cols=117 Identities=40% Similarity=0.776 Sum_probs=113.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEE
Q psy12247 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFI 80 (119)
Q Consensus 1 m~~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V 80 (119)
|+++||++||||+|++|+++||+|||++||||||+++++++|.|+|+|||||+++||+||+.+||++|+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeecCCcCchHHHHHhHhcCCCCeEEEEecccccccC
Q psy12247 81 ESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFVD 118 (119)
Q Consensus 81 n~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~~fG~ 118 (119)
||. +|++|++||+||++|||+||||||+||+++|||+
T Consensus 89 nn~-lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG~ 125 (125)
T 3m95_A 89 NNV-IPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 125 (125)
T ss_dssp TTB-CCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC--
T ss_pred CCc-cCCccchHHHHHHHcCCCCCeEEEEecCccccCC
Confidence 996 5999999999999999999999999999999995
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=5.1e-54 Score=302.22 Aligned_cols=114 Identities=27% Similarity=0.504 Sum_probs=110.4
Q ss_pred CcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcC
Q psy12247 3 FQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIES 82 (119)
Q Consensus 3 ~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~ 82 (119)
.+||++||||+|++|+++||+|||++||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcCchHHHHHhHhcCCCCeEEEEeccccccc
Q psy12247 83 MIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFV 117 (119)
Q Consensus 83 ~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~~fG 117 (119)
+ +|++|++||+||++|||+||||||+||+++|||
T Consensus 86 ~-~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 T-VLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp E-ECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred c-CCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 8 599999999999999999999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=6.8e-53 Score=295.62 Aligned_cols=117 Identities=30% Similarity=0.569 Sum_probs=114.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEE
Q psy12247 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFI 80 (119)
Q Consensus 1 m~~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V 80 (119)
|+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|++++||||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeecCCcCchHHHHHhHhcCCCCeEEEEecccccccC
Q psy12247 81 ESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFVD 118 (119)
Q Consensus 81 n~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~~fG~ 118 (119)
||.+ |++|++||+||++|||+||||||+||+++|||+
T Consensus 81 n~~~-p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG~ 117 (117)
T 1eo6_A 81 DKTV-PQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117 (117)
T ss_dssp TTBC-CCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC-
T ss_pred CCEe-cCccchHHHHHHHhCCCCCEEEEEEeCCccCCC
Confidence 9996 999999999999999999999999999999995
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=1e-52 Score=299.43 Aligned_cols=116 Identities=22% Similarity=0.438 Sum_probs=113.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCC-CCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEE-
Q psy12247 1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSAL-LPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFF- 78 (119)
Q Consensus 1 m~~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~-~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl- 78 (119)
|+ +||++||||+|++|+++||+|||++||||||++++++ +|.|+|+||+||.++||++|+.+||++|+|++++||||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 66 8999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EEcCeecCCcCchHHHHHhHhcCCCCeEEEEecccccccC
Q psy12247 79 FIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFVD 118 (119)
Q Consensus 79 ~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~~fG~ 118 (119)
||||++ |++|++||+||++|||+||||||+||+++|||+
T Consensus 88 ~vn~~~-p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG~ 126 (130)
T 2zjd_A 88 VNGHSM-VSVSTPISEVYESEKDEDGFLYMVYASQETFGM 126 (130)
T ss_dssp ETTTEE-CCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHHH
T ss_pred EECCcc-CCccchHHHHHHHhCCCCCEEEEEEeCCcccCC
Confidence 999996 999999999999999999999999999999995
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=5.4e-48 Score=268.06 Aligned_cols=110 Identities=39% Similarity=0.758 Sum_probs=107.1
Q ss_pred CCcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEc
Q psy12247 2 KFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIE 81 (119)
Q Consensus 2 ~~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 81 (119)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|++++++|||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeecCCcCchHHHHHhHhcCCCCeEEEEecc
Q psy12247 82 SMIVPADSTRMETLSQRFADKDGLIYMVYSD 112 (119)
Q Consensus 82 ~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~ 112 (119)
|.+ |++|++||+||++|+|+||||||+||+
T Consensus 81 ~~~-p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTI-PPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBC-CCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CEe-cCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 996 999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=1.4e-36 Score=204.57 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=82.9
Q ss_pred eEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEE
Q psy12247 30 FVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMV 109 (119)
Q Consensus 30 pVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~ 109 (119)
.|+|.-.+.+++|.|+++||+||+++||++|+.+||++|++++++||||||||+++|++|++||+||++|| +||||||+
T Consensus 5 Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~ 83 (91)
T 4gdk_A 5 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLH 83 (91)
T ss_dssp EEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEE
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEE
Confidence 46666666789999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eccccccc
Q psy12247 110 YSDVNIFV 117 (119)
Q Consensus 110 Ys~~~~fG 117 (119)
||+++|||
T Consensus 84 Ys~~~afG 91 (91)
T 4gdk_A 84 YCKSQAWG 91 (91)
T ss_dssp EESSCCCC
T ss_pred EeCccccC
Confidence 99999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=1.2e-35 Score=201.72 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=81.4
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCe
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGL 105 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGf 105 (119)
|++|+|++++. +++|.|+++||+||+++||++|+.+||++|+++ +|||||||+++|++|++|++||++||| |||
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 78999999887 679999999999999999999999999999998 999999999999999999999999998 999
Q ss_pred EEEEeccccccc
Q psy12247 106 IYMVYSDVNIFV 117 (119)
Q Consensus 106 Lyl~Ys~~~~fG 117 (119)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.8e-34 Score=193.38 Aligned_cols=83 Identities=12% Similarity=0.315 Sum_probs=67.6
Q ss_pred EEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEe
Q psy12247 31 VILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVY 110 (119)
Q Consensus 31 VIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Y 110 (119)
|.|.-.+.+++|+|+++||+||+++||++|+.+||++|++ ++|||||||+++|++|++||+||++|| +||||||+|
T Consensus 9 v~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~Lyv~Y 84 (91)
T 3w1s_C 9 IQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDELIVSY 84 (91)
T ss_dssp EEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTEEEEEE
T ss_pred EEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCEEEEEE
Confidence 4444445689999999999999999999999999999999 699999999999999999999999999 799999999
Q ss_pred ccccccc
Q psy12247 111 SDVNIFV 117 (119)
Q Consensus 111 s~~~~fG 117 (119)
|+++|||
T Consensus 85 s~~~afG 91 (91)
T 3w1s_C 85 CASVAFG 91 (91)
T ss_dssp EC---CC
T ss_pred eCccccC
Confidence 9999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=95.85 E-value=0.017 Score=45.42 Aligned_cols=98 Identities=10% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcceEEEEcCCCC-CCCCCCcceEEecC---CcchHhHHHHHHHhhc-CCCCCeEEEEEcCe
Q psy12247 9 YSLEERIKIGENLARNHPNCAFVILERSPSA-LLPQMPRSNYVVAY---EMTVGHFFYLLRKKMA-LRPEEACFFFIESM 83 (119)
Q Consensus 9 ~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~-~~p~L~k~Kflvp~---~~tv~~~~~~lRk~l~-l~~~~slfl~Vn~~ 83 (119)
+.|++=..-..++....+.+|||-|--.... ..+.++ -.++. ..|++++..- +..+. +-+..+..+.++|.
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 4444444455566655678999999764322 121111 11121 2277776410 22222 22344568999999
Q ss_pred ecCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 84 IVPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 84 ~~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
- ++.++.+..||++++-.||||||.-.
T Consensus 259 ~-vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 259 E-IPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp E-ECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred c-CCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 9 77999999999999999999999876
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=95.52 E-value=0.045 Score=42.57 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCC-----CcceEEEEcCCCCCCCCCCcceEEec------CCcchHhHHHHHHHhhc--CC---C
Q psy12247 9 YSLEERIKIGENLARNHP-----NCAFVILERSPSALLPQMPRSNYVVA------YEMTVGHFFYLLRKKMA--LR---P 72 (119)
Q Consensus 9 ~~~e~R~~e~~~ir~kyp-----~~ipVIvE~~~~~~~p~L~k~Kflvp------~~~tv~~~~~~lRk~l~--l~---~ 72 (119)
+.|++=..-..++....+ .+|||.|-... ++-|.++. +|+ ...|++++... .+. .+ .
T Consensus 160 ~d~~~F~~in~kL~~~~~~~~~~r~IPvRiY~~~-~~~~~iQ~---~v~p~~~~g~~~TLg~~L~~---~lP~lf~~~~~ 232 (275)
T 4gdk_B 160 DRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTT-TERPFIQK---LFRPVAADGQLHTLGDLLKE---VCPSAIDPEDG 232 (275)
T ss_dssp TCHHHHHHHHTGGGCCCTTSSSCSSCCEEEECTT-SSSSEECC---CCCSBCTTSCBCBHHHHHHH---HCGGGCC----
T ss_pred CCHHHHHHHHHhhcCCCCccCccccceEEEEecC-CCCCcccc---CcCCcCCCCCcccHHHHHHH---hcccccCCCcc
Confidence 444443444445555433 67999997531 12222221 111 23577777544 332 11 1
Q ss_pred CCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 73 EEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 73 ~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
.....+++.|.- ++.++.|.+||+++...||||||.-.
T Consensus 233 ~~~~~viihGI~-~pl~~pl~~l~~~l~y~DgFLhI~v~ 270 (275)
T 4gdk_B 233 EKKNQVMIHGIE-PMLETPLQWLSEHLSYPDNFLHISII 270 (275)
T ss_dssp --CEEEEBTTBC-CCTTSBHHHHHHHSCCTTSCEEEEEE
T ss_pred cccceEEEeCCc-CCCCCCHHHHHHhccCCCceEEEEEE
Confidence 134667888888 88999999999999999999999754
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=94.97 E-value=0.068 Score=41.53 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=51.9
Q ss_pred HHHHHH-hcCCCcceEEEEcCCCCCCCCCCcceEEec---CCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchH
Q psy12247 17 IGENLA-RNHPNCAFVILERSPSALLPQMPRSNYVVA---YEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRM 92 (119)
Q Consensus 17 e~~~ir-~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m 92 (119)
-..++. ..-...|||.|-.... |.++ -+|+ ...|++++.. ..+.- ......++++|.- ++.++.|
T Consensus 187 i~~kL~~~~~~r~IPiRIy~~~~---~~iQ---~~i~~~~~~~TLg~~L~---~~lp~-l~~~~~~iihGi~-vp~~~pl 255 (274)
T 3vqi_A 187 VRSKLFSMNKAKSLPVRVWTSNY---AVLQ---PTVPVTDKELSVAELLD---SIKLS-SDGVKSVIIQGID-VSIEDNI 255 (274)
T ss_dssp HHHTTCCGGGCSBCCEEEECTTS---CEEC---CCCBCC---CBHHHHHH---TTTCC-C--CCEEEETTEE-EETTSBH
T ss_pred HHHHhcCCCcccceeEEEEcCCC---CeEe---cccCCCCccccHHHHHH---Hhccc-cccceEEEEeCcc-CCCCCcH
Confidence 334444 2246789999976322 2221 1343 3668777644 33321 1123457888888 7889999
Q ss_pred HHHHhHhcCCCCeEEEE
Q psy12247 93 ETLSQRFADKDGLIYMV 109 (119)
Q Consensus 93 ~~lY~~~kd~DGfLyl~ 109 (119)
.+||+++.-.||||||.
T Consensus 256 ~~l~~~~~y~DgFLhiv 272 (274)
T 3vqi_A 256 FELYDIFASIDGFLYLV 272 (274)
T ss_dssp HHHHHHHCCTTSCEEEE
T ss_pred HHHHHHccCCCceEEEE
Confidence 99999999999999986
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.93 E-value=0.19 Score=32.51 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=40.4
Q ss_pred CcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHH
Q psy12247 45 PRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRME 93 (119)
Q Consensus 45 ~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~ 93 (119)
+.-+|.|+.+.+|.+++..-|++-+++++.++.|...|.- ..+++++.
T Consensus 20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdR-Ldp~~tp~ 67 (82)
T 3goe_A 20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEW-LDPNDQVQ 67 (82)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEE-CCTTSBGG
T ss_pred CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcc-cCccCChh
Confidence 4558999999999999999999999999999999999877 33344443
No 14
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.47 E-value=0.91 Score=29.22 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=44.0
Q ss_pred EecCCcchHhHHHHHHHhhcCCCCCeEEEEEc---CeecCCcCchHHHHHhHhcCCCCeEEEE
Q psy12247 50 VVAYEMTVGHFFYLLRKKMALRPEEACFFFIE---SMIVPADSTRMETLSQRFADKDGLIYMV 109 (119)
Q Consensus 50 lvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn---~~~~p~~~~~m~~lY~~~kd~DGfLyl~ 109 (119)
-||.+.+++++...|+++|+++++....-|=. +.+.+..++.|...+++=+ +|-|-+.
T Consensus 19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL~ 79 (83)
T 1oey_A 19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTLW 79 (83)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEEE
Confidence 58999999999999999999986655444544 3333788899999998876 4555543
No 15
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=86.76 E-value=0.26 Score=32.82 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=23.0
Q ss_pred ceEEecCCcchHhHHHHHHHhhcCCCC
Q psy12247 47 SNYVVAYEMTVGHFFYLLRKKMALRPE 73 (119)
Q Consensus 47 ~Kflvp~~~tv~~~~~~lRk~l~l~~~ 73 (119)
.-.+||.+.++.+|+.-|++++++...
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~~~ 51 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNTHN 51 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCS
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCCcc
Confidence 345799999999999999999987633
No 16
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=86.65 E-value=2.1 Score=25.69 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=42.7
Q ss_pred ceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCC-CCeEEEEec
Q psy12247 47 SNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADK-DGLIYMVYS 111 (119)
Q Consensus 47 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~-DGfLyl~Ys 111 (119)
..+-|..+.||+++...+..+.++++++- -|+.++.. ...+.+++++ .-+ +..|++...
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~q-rL~~~G~~-L~d~~tl~~~----~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSL-RFLFEGQR-IADNHTPKEL----GMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGE-EEEETTEE-CCTTCCHHHH----TCCTTEEEEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccE-EEEECCEE-eCCCCCHHHc----CCCCCCEEEEEEe
Confidence 35679999999999999999999988754 44557777 4567788775 222 336666543
No 17
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=85.77 E-value=3.1 Score=25.68 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=44.7
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+++|-|.|.-.. ++ ....|.|..+.+++.++....++.++++++--|+| ++.- ...+.|.+++
T Consensus 5 ~~~i~ikV~~~~-g~----~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~-l~~~~Tp~~l 67 (79)
T 3a4r_A 5 SQELRLRVQGKE-KH----QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTK-LSGKELPADL 67 (79)
T ss_dssp CCCEEEEEECSS-TT----CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEE-CCSCCCHHHH
T ss_pred CCEEEEEEEeCC-CC----EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEE-cCCCCCHHHc
Confidence 455666663321 10 13468899999999999999999999988655555 6655 4557788877
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.88 E-value=3.4 Score=25.17 Aligned_cols=75 Identities=5% Similarity=0.014 Sum_probs=50.7
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCC
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDG 104 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DG 104 (119)
|..+-|.|.... + +...+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+++++ .- ++.
T Consensus 5 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-qrL~~~Gk~-L~d~~tL~~~----~i~~g~ 72 (87)
T 1wh3_A 5 SSGIQVFVKNPD-G-----GSYAYAINPNSFILGLKQQIEDQQGLPKKQ-QQLEFQGQV-LQDWLGLGIY----GIQDSD 72 (87)
T ss_dssp SSSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHHHHTCCCTTT-EEEEETTEE-CCSSSBHHHH----TCCTTE
T ss_pred CCCEEEEEEcCC-C-----CEEEEEeCCCChHHHHHHHHHHHhCCChHH-EEEEECCEE-ccCCCCHHHC----CCCCCC
Confidence 456667775432 1 122456899999999999999999998764 445568877 4567788765 22 344
Q ss_pred eEEEEecc
Q psy12247 105 LIYMVYSD 112 (119)
Q Consensus 105 fLyl~Ys~ 112 (119)
.|++....
T Consensus 73 ~i~l~~~~ 80 (87)
T 1wh3_A 73 TLILSKKK 80 (87)
T ss_dssp EEEEEECS
T ss_pred EEEEEEec
Confidence 67776643
No 19
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.59 E-value=3.2 Score=25.46 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred ecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 51 VAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 51 vp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
|+.+.||+++...|..+.+++++. .-|+.+++. ...+.++++.= -+ ++..|+|...
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~-qrL~~~gk~-L~d~~tL~~~~--i~-~g~~i~l~~~ 81 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPEC-QRLFYRGKQ-LENGYTLFDYD--VG-LNDIIQLLVR 81 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTT-EEEEETTEE-CCSSSBHHHHT--CC-TTCEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHCcChhh-EEEEECCeE-CCCCCCHHHCC--CC-CCCEEEEEEe
Confidence 899999999999999999998764 445558887 45677887651 11 3457777764
No 20
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.46 E-value=4.7 Score=26.47 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=43.8
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
.+-|..+.||+++...|..+-++++++ .-|..+++. ...+.++++ |.-. +...|+|.|.
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~q-QrLi~~Gk~-L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNK-IVLKKWYTI-FKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGG-CEEEETTEE-CCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHH-EEEEECCEE-CCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 356899999999999999999998764 445566888 566778886 3221 3447888883
No 21
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=82.14 E-value=1.5 Score=26.52 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=42.7
Q ss_pred ceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 47 SNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 47 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
..+-|+.+.||+++...|.++.+++++. .-|+.+++. ...+.+++++ .- .++..|+|...
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~-qrL~~~g~~-L~d~~tL~~~--~i-~~~~~l~l~~r 75 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDY--NI-QKWSTLFLLLR 75 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGG-CEEEETTEE-CCTTSBTGGG--TC-CTTCEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHH-EEEEECCEE-CCCCCCHHHc--CC-CCCCEEEEEEE
Confidence 3457999999999999999999998764 345568887 4566777663 11 24557777654
No 22
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=82.00 E-value=8.3 Score=25.09 Aligned_cols=85 Identities=7% Similarity=0.062 Sum_probs=56.2
Q ss_pred HHhcCCCcceEEEEcCCCCCCC--CCCcce--EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHH
Q psy12247 21 LARNHPNCAFVILERSPSALLP--QMPRSN--YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLS 96 (119)
Q Consensus 21 ir~kyp~~ipVIvE~~~~~~~p--~L~k~K--flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY 96 (119)
..+.+|..|.|.|.......-| .|..+. +-|+.+.||+++...|....+++++. .-|+.+++. ...+.++++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrL~~~Gk~-L~D~~tL~~y- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK-QKLQYEGIF-IKDSNSLAYY- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTT-EEEEETTEE-ECTTSBHHHH-
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHH-EEEEECCEE-CCCCCCHHHC-
Confidence 5667899999988653211100 133333 46899999999999999999998764 344557877 4567788764
Q ss_pred hHhcC-CCCeEEEEec
Q psy12247 97 QRFAD-KDGLIYMVYS 111 (119)
Q Consensus 97 ~~~kd-~DGfLyl~Ys 111 (119)
.- ++..|+|...
T Consensus 95 ---~i~~g~~i~lv~r 107 (115)
T 1we7_A 95 ---NMASGAVIHLALK 107 (115)
T ss_dssp ---TCCSSCEEEEEEC
T ss_pred ---CCCCCCEEEEEEE
Confidence 22 3446777654
No 23
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=81.37 E-value=1.9 Score=25.28 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=41.6
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|.++.+++++ ..-|+.+++. ...+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~-~q~L~~~g~~-L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQ-QQRLIYSGKQ-MNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEE-CCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChH-HEEEEECCEE-CCCCCcHHHc----CCCCCCEEEEEEe
Confidence 45689999999999999999999876 4556668887 4556666543 22 3446776653
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=80.91 E-value=1.5 Score=26.50 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=43.1
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEecc
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSD 112 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~ 112 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+++++ .-+ ++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~-qrL~~~g~~-L~d~~tL~~~--~i~-~~~~i~l~~rl 76 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDY--NIH-NHSALYLLLKL 76 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETBEE-CCTTCBTTTT--TCC-TTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCeE-CCCCCCHHHC--CCC-CCCEEEEEEec
Confidence 456889999999999999999998764 455668887 4566677653 111 35577776543
No 25
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=80.84 E-value=4.7 Score=25.54 Aligned_cols=75 Identities=9% Similarity=0.076 Sum_probs=51.0
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCe
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGL 105 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGf 105 (119)
+..+-|.|.-.. + +...+-|..+.||+++...|..+.++++++- -|+.++.. ...+.+++++- -+ ++..
T Consensus 19 ~~~m~I~Vk~~~-g-----~~~~l~v~~~~tv~~lK~~i~~~~gip~~~q-rLif~Gk~-L~d~~tl~dy~--i~-~g~~ 87 (97)
T 1wyw_B 19 GEYIKLKVIGQD-S-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSL-RFLFEGQR-IADNHTPKELG--ME-EEDV 87 (97)
T ss_dssp CCEEEEEEECTT-C-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGE-EEEETTEE-CCTTCCHHHHT--CC-TTCE
T ss_pred CCcEEEEEEeCC-C-----CEEEEEECCCCcHHHHHHHHHHHHCCChhhE-EEEECCeE-cCCCCCHHHCC--CC-CCCE
Confidence 456777774321 1 2335679999999999999999999988754 44557777 45677887752 11 3446
Q ss_pred EEEEec
Q psy12247 106 IYMVYS 111 (119)
Q Consensus 106 Lyl~Ys 111 (119)
|++...
T Consensus 88 I~l~~~ 93 (97)
T 1wyw_B 88 IEVYQE 93 (97)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 777654
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=80.55 E-value=2 Score=25.18 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=41.4
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|.++.+++++ ..-|+.+++.+ ..+.++++. .- ++..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~-~q~L~~~g~~L-~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQL-EDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEEC-CTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHH-HeEEEECCeEC-CCCCcHHHc----CCCCCCEEEEEEe
Confidence 45689999999999999999999876 45566688874 456666543 22 3446776653
No 27
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.96 E-value=1.9 Score=25.76 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=41.0
Q ss_pred CcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHH
Q psy12247 27 NCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMET 94 (119)
Q Consensus 27 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~ 94 (119)
..+-|.|.... + +...+-|+.+.||+++...|.++.+++++. .-|+.+++. ...+.++++
T Consensus 6 ~~m~i~vk~~~-g-----~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~-qrL~~~gk~-L~d~~tL~~ 65 (81)
T 2dzi_A 6 SGMQLTVKALQ-G-----RECSLQVPEDELVSTLKQLVSEKLNVPVRQ-QRLLFKGKA-LADGKRLSD 65 (81)
T ss_dssp SSEEEEEEETT-S-----CEEEEEECSSCBHHHHHHHHHHHTCCCTTT-CEEEETTEE-CCTTSBGGG
T ss_pred CcEEEEEEeCC-C-----CEEEEEECCCCcHHHHHHHHHHHHCcCHHH-EEEEECCeE-CCCCCcHHH
Confidence 45666665321 1 122457899999999999999999998764 344557877 455667665
No 28
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=79.93 E-value=2.4 Score=25.61 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=36.6
Q ss_pred CcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 45 PRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 45 ~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
..-.|.|..+.+++.++....++.+++++.--|+| ++.- ...+.|.+++
T Consensus 12 ~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~-l~~~~Tp~~l 60 (72)
T 1wm3_A 12 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQP-INETDTPAQL 60 (72)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE-TTEE-CCTTCCTTTT
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE-CCEE-cCCCCCHHHc
Confidence 34568899999999999999999999987666666 4444 2334555544
No 29
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=78.67 E-value=2.3 Score=25.19 Aligned_cols=57 Identities=19% Similarity=0.099 Sum_probs=40.7
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEe
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVY 110 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Y 110 (119)
.+-|+.+.||+++...|....+++++. .-|+.+++. ...+.++++. += ++..|++.-
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~-qrL~~~gk~-L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVAN-QRLIYSGKI-LKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEE-CCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHH-EEEEECCeE-cCCCCCHHHc----CCCCCCEEEEEE
Confidence 457899999999999999999998763 455567877 4556666553 22 344676654
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=78.41 E-value=4 Score=25.25 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=43.0
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEecc
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSD 112 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~ 112 (119)
.+-|+.+.||+++...|..+.+++++.- -|+.+++. ...+.++++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~-L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKP-LEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTE-EEESSSSC-CCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEE-CCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 4568999999999999999999987754 34457776 45677887652 22 34578887654
No 31
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=78.16 E-value=7 Score=25.44 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHh
Q psy12247 18 GENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQ 97 (119)
Q Consensus 18 ~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~ 97 (119)
+..+-...|.+|-|.|.-. .+ ++..+-|.++.||++|...|-.+.++++++-.-.| +++. ...+.+++
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~-~G-----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~-LkD~~TL~---- 78 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDR-LG-----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSV-LKDHISLE---- 78 (93)
T ss_dssp ---------CEEEEEEECT-TS-----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEE-CCTTSBTG----
T ss_pred cccccCCCCceEEEEEECC-CC-----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEE-ccCcCCHH----
Confidence 3445556688888888542 11 44557899999999999999999999987654455 7777 66677774
Q ss_pred HhcCCCC-eEEEEe
Q psy12247 98 RFADKDG-LIYMVY 110 (119)
Q Consensus 98 ~~kd~DG-fLyl~Y 110 (119)
.|.=.|| -|.|-|
T Consensus 79 dY~I~dgstLhL~~ 92 (93)
T 3plu_A 79 DYEVHDQTNLELYY 92 (93)
T ss_dssp GGTCCTTCEEEEEE
T ss_pred HcCCCCCCEEEEEe
Confidence 3443333 566655
No 32
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.57 E-value=7.3 Score=24.90 Aligned_cols=73 Identities=10% Similarity=0.178 Sum_probs=49.2
Q ss_pred CcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCC-CCe
Q psy12247 27 NCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADK-DGL 105 (119)
Q Consensus 27 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~-DGf 105 (119)
..+-|.|.... + +..+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+|+++ .-. +..
T Consensus 16 ~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~-L~D~~tL~~~----gi~~g~~ 82 (106)
T 1wx7_A 16 HLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKI-LKDPDSLAQC----GVRDGLT 82 (106)
T ss_dssp SEEEEEEECSS-C------EEEEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEE-CCTTSCHHHH----TCCTTEE
T ss_pred ceEEEEEEeCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEE-CCCcCcHHHc----CCCCCCE
Confidence 44566664421 1 23467899999999999999999998764 555668888 4567777765 223 346
Q ss_pred EEEEecc
Q psy12247 106 IYMVYSD 112 (119)
Q Consensus 106 Lyl~Ys~ 112 (119)
|+|....
T Consensus 83 i~l~~~~ 89 (106)
T 1wx7_A 83 VHLVIKR 89 (106)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 7776543
No 33
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=77.29 E-value=4.8 Score=25.26 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=47.5
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCC
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDG 104 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DG 104 (119)
+..+-|.|.. + +...+-|+.+.||+++...|..+.++++++ .-|+.+++. ...+.++++. .- ++.
T Consensus 17 ~~~m~I~Vk~---g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~-L~D~~tL~~y----~I~~gs 82 (93)
T 2l7r_A 17 RGSMQLFVRA---Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPED-QVVLLAGAP-LEDEATLGQC----GVEALT 82 (93)
T ss_dssp ---CEEEEES---S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGG-CEEEETTEE-CCTTSBHHHH----TCCSSC
T ss_pred CCcEEEEEEC---C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhH-EEEEECCEE-CCCCCcHHHC----CCCCCC
Confidence 4456777754 1 233467899999999999999999998763 445567887 4667788765 22 344
Q ss_pred eEEEEe
Q psy12247 105 LIYMVY 110 (119)
Q Consensus 105 fLyl~Y 110 (119)
.|+|..
T Consensus 83 tI~lv~ 88 (93)
T 2l7r_A 83 TLEVAG 88 (93)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 677654
No 34
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=77.23 E-value=3.4 Score=24.71 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=41.7
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEe
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVY 110 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Y 110 (119)
.+-|+.+.||+++...|..+.++++++ .-|+.+++. ...+.++++. -=.++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~-qrL~~~G~~-L~d~~tL~~~---~i~~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDL-FWLTFEGKP-LEDQLPLGEY---GLKPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEE-CCTTSBGGGG---TCCTTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHH-EEEEECCEE-CCCCCcHHHC---CCCCCCEEEEEE
Confidence 457999999999999999999998774 455668877 4567777663 111344677654
No 35
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=76.70 E-value=12 Score=23.82 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCC
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDG 104 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DG 104 (119)
+..+-|.|.... + +..+-|+.+.||+++...|..+.+++++ ..-|+.+++. ...+.++++. +- ++.
T Consensus 20 ~~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~-L~D~~tL~~y----gI~~gs 86 (100)
T 1yqb_A 20 PHLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPD-QLVLIFAGKI-LKDPDSLAQC----GVRDGL 86 (100)
T ss_dssp TTEEEEEEECSS-C------EEEEEEETTCBHHHHHHHHHHHHTCCGG-GEEEEETTEE-CCTTSBHHHH----TCCTTC
T ss_pred CCeEEEEEEcCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChh-hEEEEECCEE-CCCcCcHHHC----CCCCCC
Confidence 455667775432 1 2346799999999999999999999876 4455668888 4667788765 22 344
Q ss_pred eEEEEecc
Q psy12247 105 LIYMVYSD 112 (119)
Q Consensus 105 fLyl~Ys~ 112 (119)
.|+|....
T Consensus 87 tI~l~~r~ 94 (100)
T 1yqb_A 87 TVHLVIKR 94 (100)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 67776654
No 36
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=76.63 E-value=6.2 Score=26.21 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=45.3
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+++|-|.|.-.. + ....|.|..+.+++.++....++.++++.+--|+| ++.- ...+.|.++|
T Consensus 24 ~~~I~IkVk~~~-g-----~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~-L~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNAD-G-----AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTP-IDETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETT-S-----CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCB-CCSSSHHHHH
T ss_pred CCeEEEEEECCC-C-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEE-cCCCCCHHHc
Confidence 355666664321 1 33468999999999999999999999988666666 5544 3457888887
No 37
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=76.58 E-value=3.3 Score=26.47 Aligned_cols=62 Identities=6% Similarity=0.077 Sum_probs=42.4
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+++|-|.|.-. . -+...|.|..+.+++.++....++.++++++--|+| ++.- ...++|.+++
T Consensus 3 ~~~i~ikVk~~-~-----g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~-l~~~~Tp~dl 64 (91)
T 2io0_B 3 NDHINLKVAGQ-D-----GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQP-INETDTPAQL 64 (91)
T ss_dssp -CEEEEEEECT-T-----SCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEE-CCTTCCTTTT
T ss_pred CCeEEEEEECC-C-----CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEE-cCCCCCHHHc
Confidence 34555666321 1 134578999999999999999999999987655665 5555 3445666554
No 38
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=76.20 E-value=11 Score=24.27 Aligned_cols=83 Identities=8% Similarity=0.066 Sum_probs=52.9
Q ss_pred HHHhcCCCcceEEEEcCCCCCCCCCCcceEEecC-CcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhH
Q psy12247 20 NLARNHPNCAFVILERSPSALLPQMPRSNYVVAY-EMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQR 98 (119)
Q Consensus 20 ~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~-~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~ 98 (119)
....++|.-|.|.|.-.. .+.=+...+-|+. +.||+++...|....+++++.- -|+.+++. ...+.++++.
T Consensus 19 ~~l~~~~~~i~i~Vk~~~---~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Q-rL~~~Gk~-L~D~~tL~~y--- 90 (111)
T 1we6_A 19 QFLAQHPGPATIRVSKPN---ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQ-KLSGKAGF-LKDNMSLAHY--- 90 (111)
T ss_dssp HHHHHCCSCEEEEECCTT---CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTS-EEECSSSB-CCTTSBTTTT---
T ss_pred HHHHhCCCcEEEEEEecc---cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHe-EEEECCEE-CCCCCcHHHC---
Confidence 344567888888885421 0011223467897 9999999999999999987643 34447776 4556666543
Q ss_pred hcC-CCCeEEEEec
Q psy12247 99 FAD-KDGLIYMVYS 111 (119)
Q Consensus 99 ~kd-~DGfLyl~Ys 111 (119)
.- ++..|+|...
T Consensus 91 -~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 -NVGAGEILTLSLR 103 (111)
T ss_dssp -TCSSSCEEEEECS
T ss_pred -CCCCCCEEEEEEE
Confidence 22 3446777653
No 39
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=76.09 E-value=6.2 Score=24.93 Aligned_cols=75 Identities=9% Similarity=0.007 Sum_probs=49.6
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcC-chHHHHHhHhcCCCC
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADS-TRMETLSQRFADKDG 104 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~-~~m~~lY~~~kd~DG 104 (119)
+..+.|.|.... + ....-|+.+.||+++...|..+.++++++ .-|+.+++. ...+ .++++.= -+ ++.
T Consensus 13 ~~~~~I~Vk~~~-~------~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~-L~D~~~tL~~yg--I~-~gs 80 (94)
T 2kan_A 13 VRKIHVTVKFPS-K------QFTVEVDRTETVSSLKDKIHIVENTPIKR-MQLYYSGIE-LADDYRNLNEYG--IT-EFS 80 (94)
T ss_dssp SCCEEEEEECSS-C------EEEEEECTTCBHHHHHHHHHHHSSSCTTT-EEEEETTEE-ECCTTSBHHHHT--CC-TTE
T ss_pred CCCEEEEEEcCC-c------EEEEEECCCCcHHHHHHHHHHHHCcCHHH-EEEEECCEE-CCCCcccHHHCC--CC-CCC
Confidence 456677775421 1 23456999999999999999999998764 445567777 3455 7777641 11 344
Q ss_pred eEEEEecc
Q psy12247 105 LIYMVYSD 112 (119)
Q Consensus 105 fLyl~Ys~ 112 (119)
.|+|....
T Consensus 81 tl~lv~r~ 88 (94)
T 2kan_A 81 EIVVFLKS 88 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEEeC
Confidence 67776543
No 40
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=75.96 E-value=7.1 Score=24.11 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=39.8
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEe
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVY 110 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Y 110 (119)
.-|+.+.||+++...|..+.++++++ .-|+.+++.+...+.++++.= -+ ++..|++..
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~lL~D~~tL~~y~--I~-~gs~i~lv~ 82 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSK-QTLIVDGIVILREDLTVEQCQ--IV-PTSDIQLEV 82 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEECCCSSSBHHHHT--CC-TTSCEEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEEecCCcCCHHHcC--CC-CCCEEEEEE
Confidence 46899999999999999999998764 445557766235667777641 11 344566643
No 41
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=75.94 E-value=3.1 Score=25.92 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=43.6
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEecc
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSD 112 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~ 112 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+++++ .-+ ++..|+|....
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~-L~d~~tL~~~--~i~-~~~~i~l~~r~ 74 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDY--NIQ-KESTLHLVLRL 74 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEE-CCTTSBTGGG--TCC-TTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEE-CCCCCcHHHc--CCC-CCCEEEEEEEc
Confidence 456899999999999999999998764 556668888 5567777764 111 35577777643
No 42
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=75.42 E-value=3.8 Score=25.20 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=49.8
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCe
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGL 105 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGf 105 (119)
|..+-|.|.-.. + +...+-|+.+.||+++...|..+.++++++- -|+.+++. ...+.+|++. .-++..
T Consensus 3 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~-L~d~~tL~~~----~i~g~~ 70 (90)
T 4dwf_A 3 PDSLEVLVKTLD-S-----QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRV-LQDDKKLQEY----NVGGKV 70 (90)
T ss_dssp CCEEEEEEEETT-C-----CEEEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEE-CCTTSBGGGG----TCTTEE
T ss_pred CcEEEEEEEcCC-C-----CEEEEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCeE-CCCCCCHHHc----CCCCcE
Confidence 455666664421 1 2234578999999999999999999987643 44458887 5667777763 222456
Q ss_pred EEEEecc
Q psy12247 106 IYMVYSD 112 (119)
Q Consensus 106 Lyl~Ys~ 112 (119)
|+|....
T Consensus 71 i~l~~~~ 77 (90)
T 4dwf_A 71 IHLVERA 77 (90)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 7776653
No 43
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=74.98 E-value=3.1 Score=25.30 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=41.4
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEe
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVY 110 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Y 110 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.++++. .-+ ++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~-qrL~~~G~~-L~d~~tL~~~--~i~-~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQ-MNDEKTAADY--KIL-GGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG-CCEEETTEE-CCTTSBGGGG--TCC-TTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHH-EEEEECCeE-CCCCCcHHHc--CCC-CCCEEEEEE
Confidence 457999999999999999999998764 344558887 5567777764 111 345676654
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=74.43 E-value=2.8 Score=26.44 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=42.7
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEecc
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSD 112 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~ 112 (119)
.+-|+.+.||+++...|.++.+++++. .-|+.+++.+ ..+.+++++ .- ++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~-qrL~~~Gk~L-~D~~tL~~~----gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLSDY----NIQKESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGG-EEEEETTEEC-CTTSBTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEEC-CCCCCHHHc----CCCCCCEEEEEEeC
Confidence 456889999999999999999998764 4555688874 556676653 22 45577777654
No 45
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=72.84 E-value=4.8 Score=24.58 Aligned_cols=62 Identities=13% Similarity=0.295 Sum_probs=43.5
Q ss_pred CCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHH
Q psy12247 25 HPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMET 94 (119)
Q Consensus 25 yp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~ 94 (119)
-|..+.|.|.... + +...+-|+.+.||+++...|..+.+++++.- -|+.+++. ...+.++++
T Consensus 14 ~~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~-L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLD-S-----QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRV-LQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETT-S-----CEEEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEE-CCTTSBGGG
T ss_pred CCCeEEEEEEcCC-C-----CEEEEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEE-CCCCCcHHH
Confidence 3666777775421 1 2224578999999999999999999987643 44558887 566777765
No 46
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=72.82 E-value=9.1 Score=24.69 Aligned_cols=30 Identities=3% Similarity=-0.125 Sum_probs=23.9
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEE
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFF 79 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~ 79 (119)
-.||.+.+++++..-|+.||+++ +.-+|.|
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 36999999999999999999995 3334444
No 47
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=72.74 E-value=3.3 Score=25.70 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=38.7
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCC-CCeEEEEe
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADK-DGLIYMVY 110 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~-DGfLyl~Y 110 (119)
.-|+.+.||+++...|....+++++. .-|+.+++. ...+.+++++ +-. +..|+|..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~-qrL~~~Gk~-L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRG-QKLIFKGKV-LVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTT-CEEEETTEE-CCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHH-EEEEECCeE-CCCcCCHHHC----CCCCCCEEEEEE
Confidence 46899999999999999999998653 334467877 4556666543 222 33566654
No 48
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=72.42 E-value=13 Score=24.06 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=44.8
Q ss_pred CCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 25 HPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 25 yp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
-+++|-|.|.-.. ++ ....|.|..+.+++.++..-.++.+++++.--|+| ++.- ...++|..+|
T Consensus 22 ~~~~I~LkV~~~d-g~----~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~r-I~~~~TP~dL 85 (97)
T 2jxx_A 22 TSQQLQLRVQGKE-KH----QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTK-LSGRELPADL 85 (97)
T ss_dssp SCSEEEEEEEESS-SS----CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEE-CCSCSCHHHH
T ss_pred CCCeEEEEEEcCC-CC----EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEE-cCCCCCHHHc
Confidence 3556666663321 10 23468999999999999999999999988555555 6655 4556788777
No 49
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=71.30 E-value=4.6 Score=24.00 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=39.3
Q ss_pred EE-ecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEe
Q psy12247 49 YV-VAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVY 110 (119)
Q Consensus 49 fl-vp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Y 110 (119)
+- |+.+.||+++...|..+.+++++. .-|+.+++. ...+.++++. .- ++..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~-qrL~~~g~~-L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGL-QRLFYRGKQ-MEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEE-CCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhh-EEEEECCEE-CCCCCCHHHc----CCCCCCEEEEEE
Confidence 45 899999999999999999998764 445557777 4556666543 22 344666654
No 50
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.23 E-value=9.4 Score=23.72 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=47.9
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCC-
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDG- 104 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DG- 104 (119)
+..+-|.|... + +...+-|+.+.||+++...|..+.+++++.- -|+.+++. ...+.+++++ .-.||
T Consensus 15 ~~~m~i~Vk~~--g-----~~~~~~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~-L~D~~tL~~~----gi~~g~ 81 (96)
T 1wx8_A 15 SRIIRVSVKTP--Q-----DCHEFFLAENSNVRRFKKQISKYLHCNADRL-VLIFTGKI-LRDQDILSQR----GILDGS 81 (96)
T ss_dssp SCEEEEEEECS--S-----SEEEEEEETTCCHHHHHHHHHHHTCSCTTTB-CCEETTEE-CCTTSCHHHH----TCCTTE
T ss_pred CCcEEEEEEEC--C-----eEEEEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEE-CCCcCCHHHC----CCCCCC
Confidence 34566666443 1 2234578999999999999999999987643 34457777 4667788763 33344
Q ss_pred eEEEEec
Q psy12247 105 LIYMVYS 111 (119)
Q Consensus 105 fLyl~Ys 111 (119)
.|+|...
T Consensus 82 ~i~l~~~ 88 (96)
T 1wx8_A 82 TVHVVVR 88 (96)
T ss_dssp EEECCBC
T ss_pred EEEEEEe
Confidence 5665443
No 51
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=71.18 E-value=4.4 Score=25.12 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=40.1
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEE
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMV 109 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~ 109 (119)
.+-|+.+.||+++...|.++.+++++. .-|+.+++. ...+.++++. += ++..|++.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrL~~~Gk~-L~D~~tL~~~----gi~~g~~i~l~ 87 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDY----NIQKESTLHLV 87 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG-CEEEETTEE-CCTTCBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhh-EEEEECCeE-CCCcCcHHHC----CCCCCCEEEEE
Confidence 456999999999999999999998764 344558887 5567777663 22 34456654
No 52
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=70.49 E-value=18 Score=23.18 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=44.1
Q ss_pred ceEEecCCcchHhHHHHHHHhhcCCCCCeEEE-EEc--C-eecCCcCchHH---HHHhHhcCCCCeEEE
Q psy12247 47 SNYVVAYEMTVGHFFYLLRKKMALRPEEACFF-FIE--S-MIVPADSTRME---TLSQRFADKDGLIYM 108 (119)
Q Consensus 47 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl-~Vn--~-~~~p~~~~~m~---~lY~~~kd~DGfLyl 108 (119)
.-+-||.+.++.++..-||.+.++.+.+.+-+ |++ | -..-+.|+.|. ++|+-.+|+.=.||+
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 45679999999999999999999988777766 454 2 23356676664 567777654434444
No 53
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.37 E-value=8.7 Score=25.16 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=36.2
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHH
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMET 94 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~ 94 (119)
-.-|+.+.||+++...|-.+.++++.+ .-|..+++. ...+.+|++
T Consensus 33 ~lev~~~~TV~~lK~kI~~k~gip~~q-QrLI~~GKi-L~D~~TL~~ 77 (100)
T 1wju_A 33 LLETRLHITGRELRSKIAETFGLQENY-IKIVINKKQ-LQLGKTLEE 77 (100)
T ss_dssp EEEEESSSBHHHHHHHHHHHTTCCSTT-CEEEETTEE-CCTTSBHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHHCcCHHH-eEEEeCCeE-CCCCCcHHH
Confidence 345899999999999999999998764 345567888 577788876
No 54
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=70.30 E-value=4.4 Score=25.08 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=39.9
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.+++++ ..-|+.+++.+ ..+.++++. .- ++..|++...
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~-~qrL~~~Gk~L-~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPD-QQRLIFAGKQL-EDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGG-GCEEEETTEEC-CTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEECCCChHHHHHHHHHHHHCcChh-hEEEEECCEEC-CCCCcHHHc----CCCCCCEEEEEEe
Confidence 34688999999999999999999875 34455578773 456666553 22 3446666543
No 55
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=70.11 E-value=4.1 Score=25.27 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=41.9
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.++++++- -|+.+++. ...+.++++. .-+ ++..|+|...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~-L~D~~tL~~~--~i~-~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQ-MNDEKTAADY--KIL-GGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEE-CCTTSBTTTT--TCC-TTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHE-EEEECCeE-CCCCCcHHHc--CCC-CCCEEEEEEE
Confidence 3568899999999999999999987643 44558887 4667777764 111 3457777654
No 56
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.07 E-value=8.8 Score=23.81 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=47.2
Q ss_pred CcceEEEEcCCCCCCCCCCcceEE--ecCCcchHhHHHHHHHhh--cCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCC
Q psy12247 27 NCAFVILERSPSALLPQMPRSNYV--VAYEMTVGHFFYLLRKKM--ALRPEEACFFFIESMIVPADSTRMETLSQRFADK 102 (119)
Q Consensus 27 ~~ipVIvE~~~~~~~p~L~k~Kfl--vp~~~tv~~~~~~lRk~l--~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~ 102 (119)
..+.|.|.... +. ...+- |+.+.||+++...|.... ++++++ .=|+.+++. ...+.++++....-+ +
T Consensus 6 ~~m~i~Vk~~~-~~-----~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~-QrLi~~Gk~-L~D~~tL~~~~~~i~-~ 76 (93)
T 1wgd_A 6 SGVTLLVKSPN-QR-----HRDLELSGDRGWSVGHLKAHLSRVYPERPRPED-QRLIYSGKL-LLDHQCLRDLLPKQE-K 76 (93)
T ss_dssp CCCEEEEECSS-SS-----CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTT-CEEEETTEE-CCSSSCHHHHSCSSS-C
T ss_pred cEEEEEEEeCC-CC-----eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHH-eEEEECCEE-CcCcCCHHHHhcCCC-C
Confidence 45667775432 11 11344 459999999999999998 887653 334457887 556778877532122 3
Q ss_pred CCeEEEEec
Q psy12247 103 DGLIYMVYS 111 (119)
Q Consensus 103 DGfLyl~Ys 111 (119)
+..|+|...
T Consensus 77 ~~~i~lv~~ 85 (93)
T 1wgd_A 77 RHVLHLVCN 85 (93)
T ss_dssp SEEEEEECC
T ss_pred CCEEEEEeC
Confidence 446666543
No 57
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=68.14 E-value=5.1 Score=25.32 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=46.8
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCC
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDG 104 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DG 104 (119)
...+-|.|.... + +...+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+++++ .= ++.
T Consensus 20 ~~~m~I~Vk~~~-g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~-L~D~~tL~~~----~i~~g~ 87 (98)
T 4hcn_B 20 GRPMQIFVKTLT-G-----KTITLEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDY----NIQKES 87 (98)
T ss_dssp --CCEEEEEETT-C-----CEEEEECCTTCBHHHHHHHHHHHHCCCGGG-CEEEETTEE-CCTTCBSGGG----TCCTTE
T ss_pred CCeEEEEEEeCC-C-----CEEEEEECCCCcHHHHHHHHHHHhCCChhH-EEEEECCEE-CCCCCcHHHC----CCCCCC
Confidence 345666665421 1 223456899999999999999999998764 345568887 4666777653 22 344
Q ss_pred eEEEEe
Q psy12247 105 LIYMVY 110 (119)
Q Consensus 105 fLyl~Y 110 (119)
.|++..
T Consensus 88 ~i~l~~ 93 (98)
T 4hcn_B 88 TLHLVL 93 (98)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 566653
No 58
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=67.97 E-value=15 Score=23.10 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=32.3
Q ss_pred ecCCcchHhHHHHH-HHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 51 VAYEMTVGHFFYLL-RKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 51 vp~~~tv~~~~~~l-Rk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
++.+.||+++...| ..+-++++++ .=|+.+++. ...+.++++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~-QrLi~~Gk~-L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISE-IKLLLKGKV-LHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTT-EEEEETTEE-CCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHH-EEEEECCEE-CcCcCCHHHc
Confidence 34899999999999 7777887765 344557888 5677888854
No 59
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=67.26 E-value=4.5 Score=25.92 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=50.8
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCC
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDG 104 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DG 104 (119)
+..+-|.|... + +...+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+++++ +- ++.
T Consensus 23 ~~~m~I~Vk~~--g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~-L~D~~tL~~~----gI~~g~ 89 (101)
T 2klc_A 23 PKIMKVTVKTP--K-----EKEEFAVPENSSVQQFKEEISKRFKSHTDQ-LVLIFAGKI-LKDQDTLSQH----GIHDGL 89 (101)
T ss_dssp CCCEEEEEECS--S-----CEEEEEECSCCCHHHHHHHHHHHHTCCGGG-EEEEETTEE-ECTTCCTGGG----TCCTTC
T ss_pred CCeEEEEEEeC--C-----cEEEEEECCCCCHHHHHHHHHHHHCcChhh-EEEEECCEE-CCCcCcHHHc----CCCCCC
Confidence 67788888553 2 223467999999999999999999998764 445567877 3556676653 33 344
Q ss_pred eEEEEecc
Q psy12247 105 LIYMVYSD 112 (119)
Q Consensus 105 fLyl~Ys~ 112 (119)
.|+|....
T Consensus 90 ~I~l~~~~ 97 (101)
T 2klc_A 90 TVHLVIKT 97 (101)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 67776543
No 60
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=67.14 E-value=5.9 Score=25.22 Aligned_cols=62 Identities=6% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+++|-|.|.-. .+ ....|.|..+.++..++....++.+++++.--|+| ++.- ...+.|.++|
T Consensus 15 ~~~i~ikV~~~-~g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~-l~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQ-DG-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQP-INETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECT-TS-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE-TTEE-CCTTCCTTTT
T ss_pred CCeEEEEEECC-CC-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE-CCEE-cCCCCCHHHc
Confidence 45666666432 11 23568999999999999999999999987544554 5555 3345565544
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=66.81 E-value=8.8 Score=24.82 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=41.4
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+++++ .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~-L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTT-EEEEETTEE-CCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCccc-EEEEECCEE-CCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998764 445567877 4556677653 22 3446776653
No 62
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=66.52 E-value=6.3 Score=25.64 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=41.1
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEe
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVY 110 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Y 110 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+|+++- - .++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~-L~D~~tL~~~g--I-~~gs~I~l~~ 106 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDYN--I-QKESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEE-CCTTSBTTTTT--C-CTTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHH-EEEEECCEE-CCCCCcHHHCC--C-CCCCEEEEEE
Confidence 457999999999999999999998764 445568887 45666776631 1 1344666654
No 63
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.27 E-value=23 Score=22.64 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=38.2
Q ss_pred CcchHhHHHHHHHhh--cCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEeccc
Q psy12247 54 EMTVGHFFYLLRKKM--ALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSDV 113 (119)
Q Consensus 54 ~~tv~~~~~~lRk~l--~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 113 (119)
+.||+++...|..+. ++++++..=|+.+++. ...+.+|+++ .- ++-.|+|.-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~-L~D~~tL~~y----~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRK-LKDDQTLDFY----GIQPGSTVHVLRKSW 101 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEE-CCTTCBHHHH----TCCTTCEEEEEESSC
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeE-CCCCCcHHHc----CCCCCCEEEEEeCCC
Confidence 599999999999999 8887751344567777 4667788764 22 234677765443
No 64
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.16 E-value=20 Score=22.83 Aligned_cols=60 Identities=23% Similarity=0.230 Sum_probs=42.8
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEeccc
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSDV 113 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 113 (119)
.+-|+.+.||+++...|..+.+++++.- -|+.+++. ...+.+|++. +- ++..|+|.....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~-L~D~~tL~~y----gI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQ-RWFFSGRP-LTDKMKFEEL----KIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTC-EEEETTEE-CCTTSHHHHC----CCSSSCEEEEECCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccE-EEEECCEE-CCCCCcHHHc----CCCCCCEEEEEEeCC
Confidence 3569999999999999999999986643 34457877 4567777654 22 345777776543
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=65.22 E-value=5 Score=25.77 Aligned_cols=67 Identities=18% Similarity=0.064 Sum_probs=39.9
Q ss_pred HHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 20 NLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 20 ~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+++-+-.-.|-|.|.. .+.. ..+-|+.+.||+++...|..+.+++++.- -|+.+++. ...+.+++++
T Consensus 20 ~l~l~~~m~i~I~Vk~--~g~~-----~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~-L~D~~tL~~~ 86 (101)
T 3m63_B 20 NLYFQGAMSLNIHIKS--GQDK-----WEVNVAPESTVLQFKEAINKANGIPVANQ-RLIYSGKI-LKDDQTVESY 86 (101)
T ss_dssp ---------CCEEEEC--SSCC-----CCBCCCTTSBHHHHHHHHHHHHSCCSTTC-CEEETTEE-CCTTSBTTTT
T ss_pred eecccCCcEEEEEEEE--CCEE-----EEEEeCCCCCHHHHHHHHHHHHCcChHHE-EEEECCEE-CCCcCcHHHC
Confidence 3333333456677754 2221 12358899999999999999999987643 33447777 5567777653
No 66
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=64.36 E-value=6.4 Score=25.99 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=37.0
Q ss_pred CcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 45 PRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 45 ~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
....|.|..+.++..++....++.+++++.--|+| ++.- ...+.|.++|
T Consensus 41 ~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~r-l~~~~Tp~dl 89 (106)
T 2eke_C 41 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIR-IQADQTPEDL 89 (106)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEE-CCTTCCTTTT
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCeE-cCCCCCHHHc
Confidence 34568899999999999999999999988655665 5555 3345566555
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=64.26 E-value=14 Score=22.86 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=40.5
Q ss_pred EecCCcchHhHHHHHHHhhcCCCCCeEEEE---EcCeecCCcCchHHHHHhHhcCCCCeEEEEeccc
Q psy12247 50 VVAYEMTVGHFFYLLRKKMALRPEEACFFF---IESMIVPADSTRMETLSQRFADKDGLIYMVYSDV 113 (119)
Q Consensus 50 lvp~~~tv~~~~~~lRk~l~l~~~~slfl~---Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 113 (119)
-|+.+.||++|...|..+.+++++.- =|+ .+++. ...+.+++++ .-+ ++..|+|.-+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~Q-kLi~~k~~Gk~-L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQ-KLLGLKVKGKP-AENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTC-EEESCEETTEE-CCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHe-EEEeeccCCcC-cCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 46889999999999999999987643 334 57777 4566788764 112 344677665543
No 68
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.23 E-value=11 Score=23.85 Aligned_cols=57 Identities=11% Similarity=0.212 Sum_probs=38.4
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcC-chHHHHHhHhcCCCCeEEEEe
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADS-TRMETLSQRFADKDGLIYMVY 110 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~-~~m~~lY~~~kd~DGfLyl~Y 110 (119)
.-|+.+.||++|...|..+.++++++ .=|+.+++.+ ..+ .+|++. .-+ ++..|+|.-
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~-qrL~~~gk~L-~D~~~tL~~y--gI~-~g~~l~l~~ 83 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEE-AQIVYMEQLL-TDDHCSLGSY--GLK-DGDMVVLLQ 83 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGG-BCEEETTEEE-CCSSSBHHHH--TCC-TTEEEEECB
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHH-eEEEECCEEC-CCCcccHHHC--CCC-CCCEEEEEE
Confidence 45899999999999999999998653 3345577763 444 567664 112 234566654
No 69
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=62.16 E-value=5.9 Score=25.98 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=41.4
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEecc
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSD 112 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~ 112 (119)
+-|+.+.||+++...|..+.+++++. .-|+.+++. ...+.+|++. .- ++..|+|....
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~-L~D~~tL~~y----gI~~gstI~l~~~~ 82 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIWAGKQ-LEDGRTLSDY----NIQRESTLHLVLRL 82 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEE-CCTTCBTTTT----TCCSSCEEEEEECC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHH-EEEEECCEE-CCCCCcHHHC----CCCCCCEEEEEEEc
Confidence 45889999999999999999998764 445567877 4556676553 22 34567776654
No 70
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.13 E-value=19 Score=22.10 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=47.0
Q ss_pred CcceEEEEcCCCCCCCCCCcceEEecCC-----cchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC
Q psy12247 27 NCAFVILERSPSALLPQMPRSNYVVAYE-----MTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD 101 (119)
Q Consensus 27 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~-----~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd 101 (119)
..+-|.|... + +...+-|+.+ .||+++...|..+.+++++. .=|+.+++.+.-.+.+|+++ .=
T Consensus 6 ~~~~v~Vk~~--~-----~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~-qrL~~~Gk~L~D~~~~L~~~----~i 73 (92)
T 1wxv_A 6 SGLTVTVTHS--N-----EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSF-QKLIFKGKSLKEMETPLSAL----GI 73 (92)
T ss_dssp SSEEEEEECS--S-----SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTT-CEEEETTEEECCSSSBHHHH----TC
T ss_pred CeEEEEEEEC--C-----EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHH-EEEEECCeecCCCcccHHHC----CC
Confidence 4566777442 1 1223457774 99999999999999988653 33445777744335578764 22
Q ss_pred CCC-eEEEEecccc
Q psy12247 102 KDG-LIYMVYSDVN 114 (119)
Q Consensus 102 ~DG-fLyl~Ys~~~ 114 (119)
.|| .|+|.-+..+
T Consensus 74 ~~g~~i~l~~~~~~ 87 (92)
T 1wxv_A 74 QDGCRVMLIGKKNS 87 (92)
T ss_dssp CSSEEEEEESCCSC
T ss_pred CCCCEEEEEecCCC
Confidence 233 5666554433
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=61.85 E-value=19 Score=23.70 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=41.7
Q ss_pred ceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHH
Q psy12247 29 AFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMET 94 (119)
Q Consensus 29 ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~ 94 (119)
+-|.||-...+. ..-.+-|.++.||+++...|-.+.+++++.-= ++.++++ ...+.++++
T Consensus 25 l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkl-l~D~~TL~~ 84 (105)
T 4dbg_A 25 LWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRL-ARDQETLHS 84 (105)
T ss_dssp EEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEE-ECTTCBTGG
T ss_pred EEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeE-ccCcCcHHH
Confidence 446666643221 23345688999999999999999999986443 4457776 666777764
No 72
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.45 E-value=10 Score=25.38 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=41.4
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCC-eEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDG-LIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DG-fLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.+++.+ ..+.+|++ |.-.|| .|+|...
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L-~D~~tL~d----ygI~~gstI~lv~~ 103 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQ-LVLIFAGKIL-KDQDTLIQ----HGIHDGLTVHLVIK 103 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSS-EEEEETTEEE-STTSCGGG----TTCSSSEEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcce-EEEEECCEEc-CCCCCHHH----cCCCCCCEEEEEec
Confidence 456899999999999999999998764 4555678774 56667655 333344 6776654
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=61.12 E-value=29 Score=22.75 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=41.3
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.+++.+ ..+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~-qrL~~~g~~L-~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEEC-CTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhh-EEEEECCEEC-CCCCCHHHc----CCCCCCEEEEEEe
Confidence 456889999999999999999998764 4455678774 456676654 22 3456777654
No 74
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=60.48 E-value=31 Score=22.21 Aligned_cols=59 Identities=5% Similarity=0.089 Sum_probs=46.6
Q ss_pred CCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC
Q psy12247 42 PQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD 101 (119)
Q Consensus 42 p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd 101 (119)
|.|.-+..-||++..+..++.+--...+.++..+--+--++.= -.++++-|++|=+|..
T Consensus 21 pklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiG-InP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 21 PRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIG-INPAQTAGNVFLKHGS 79 (92)
T ss_dssp TTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCC-CCCSSBHHHHHHHTCS
T ss_pred CCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcc-cChhhccchhhhhcCc
Confidence 5566677789999999999999999999998776444333333 6678999999999974
No 75
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=64.24 E-value=1.9 Score=25.61 Aligned_cols=45 Identities=4% Similarity=0.039 Sum_probs=32.2
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+-|+.+.||+++...|....+++++. .-|+.+++. ...+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~-qrL~~~gk~-L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQ-LRVIFAGKE-LPNHLTVQNC 59 (76)
Confidence 45888999999999999998888664 334446666 3455666553
No 76
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=59.78 E-value=5.4 Score=25.74 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=42.5
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEeccc
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDV 113 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 113 (119)
+-|+.+.||+++...|..+.++++++ .-|+.+++. ...+.+|+++ .-+ ++..|+|..+..
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~-L~D~~tL~~~--~i~-~g~~i~lv~~~~ 75 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQ-IKLIYSGKV-LQDSKTVSEC--GLK-DGDQVVFMVSQK 75 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGG-CEEEETTEE-CCTTSBTTTT--TCC-TTCEEEEECCC-
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhh-EEEEECCEE-CCCcCCHHHc--CCC-CCCEEEEEEcCC
Confidence 45889999999999999999987664 345557887 5667777764 122 355788776543
No 77
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=59.71 E-value=7.7 Score=23.00 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=17.7
Q ss_pred HHHHhhcCCCCCeEEEEEcC
Q psy12247 63 LLRKKMALRPEEACFFFIES 82 (119)
Q Consensus 63 ~lRk~l~l~~~~slfl~Vn~ 82 (119)
-+|++|++.+++.|.+++.+
T Consensus 29 eiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 29 ELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEEEC
Confidence 57999999999999998873
No 78
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=58.95 E-value=26 Score=20.80 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=48.6
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHh---hcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKK---MALRPEEACFFFIESMIVPADSTRMETLSQRFAD- 101 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~---l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd- 101 (119)
|..+-|.|.... + +...+-|+.+.||+++...|..+ -+++++ ..-|+.+++. ...+.++++. +-
T Consensus 3 ~~~m~i~vk~~~-g-----~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~-~qrLi~~Gk~-L~D~~tL~~~----~i~ 70 (85)
T 2wyq_A 3 PMAVTITLKTLQ-Q-----QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVA-GQKLIYAGKI-LSDDVPIRDY----RID 70 (85)
T ss_dssp -CCEEEEEEETT-S-----CEEEEEECTTSBHHHHHHHHHHHHCTTTCCGG-GEEEEETTEE-CCTTSBGGGG----CCC
T ss_pred CceEEEEEEECC-C-----CEEEEEECCCCCHHHHHHHHHhhccccCCCHH-HeEEEECCEE-CcCCCCHHHc----CCC
Confidence 566777775532 1 12245689999999999999998 456655 3445568887 4566677653 33
Q ss_pred CCCeEEEEecccc
Q psy12247 102 KDGLIYMVYSDVN 114 (119)
Q Consensus 102 ~DGfLyl~Ys~~~ 114 (119)
++..|++..+...
T Consensus 71 ~g~~i~l~~~~~~ 83 (85)
T 2wyq_A 71 EKNFVVVMVTKTK 83 (85)
T ss_dssp TTSEEEEEEC---
T ss_pred CCCEEEEEEcCCC
Confidence 4557888766543
No 79
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=58.55 E-value=7.7 Score=23.89 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=19.4
Q ss_pred HHHHhhcCCCCCeEEEEEc-Ceec--CCcC---chHHHHHhHhcC
Q psy12247 63 LLRKKMALRPEEACFFFIE-SMIV--PADS---TRMETLSQRFAD 101 (119)
Q Consensus 63 ~lRk~l~l~~~~slfl~Vn-~~~~--p~~~---~~m~~lY~~~kd 101 (119)
-+|++|++.+++.+.+.+. +.++ |... .++.++...+.+
T Consensus 20 ~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~ 64 (82)
T 1mvf_D 20 TLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP 64 (82)
T ss_dssp HHHHHTTCCTTCBEEEEEETTEEEEEEC-----------------
T ss_pred HHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc
Confidence 4689999999999999886 4433 5443 478889888853
No 80
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=56.72 E-value=22 Score=23.89 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=45.2
Q ss_pred EecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC------CCCeEEEEecccccc
Q psy12247 50 VVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD------KDGLIYMVYSDVNIF 116 (119)
Q Consensus 50 lvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd------~DGfLyl~Ys~~~~f 116 (119)
-|..+.||+++...|..+.++++++- -|+.+++. ...+.+|++. . -++ .+--|++......+|
T Consensus 17 ev~~sdTV~~lK~kI~~~egIP~~qQ-rLi~~Gk~-LeD~~TLsdy-~-I~~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 17 DAKESSTVFELKRIVEGILKRPPEEQ-RLYKDDQL-LDDGKTLGEC-G-FTSQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGE-EEEETTEE-CCTTSBHHHH-T-CCTTTSBTTBCEEEEEEEBSSSCB
T ss_pred EeCCcChHHHHHHHHHHHhCCCHHHe-EEEECCeE-CCCCCCHHHc-C-cccccccCCCCCEEEEEecCCCce
Confidence 48999999999999999999987643 34468887 5778889873 2 211 245688888744443
No 81
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=56.54 E-value=9.1 Score=23.47 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=28.5
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcC
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADS 89 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~ 89 (119)
.-+|...|+++++ ++|+++++.. -+.||+..+|..+
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 5689999999874 6789998877 4889999866543
No 82
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.44 E-value=14 Score=23.21 Aligned_cols=32 Identities=16% Similarity=-0.001 Sum_probs=26.4
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCC-CeEEEEE
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPE-EACFFFI 80 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~-~slfl~V 80 (119)
--+|.++||+++...|.+..++++. +.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 4689999999999999999999864 5666553
No 83
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=56.08 E-value=10 Score=21.55 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=18.1
Q ss_pred HHHHHhhcCCCCCeEEEEEcC
Q psy12247 62 YLLRKKMALRPEEACFFFIES 82 (119)
Q Consensus 62 ~~lRk~l~l~~~~slfl~Vn~ 82 (119)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 357999999999999998874
No 84
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=55.83 E-value=14 Score=23.77 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhh-cCCCCCeEEEEEcCeecCCcCchHHHHHh
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKM-ALRPEEACFFFIESMIVPADSTRMETLSQ 97 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l-~l~~~~slfl~Vn~~~~p~~~~~m~~lY~ 97 (119)
+..|.|.|.- +.+... .-.+-|+.+.||+++...|..++ +..+.+..=|..+++. ...+.+|++...
T Consensus 21 ~~~m~I~VK~-~~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~-L~D~~tL~~y~~ 88 (99)
T 2kdb_A 21 GHPVTLIIKA-PNQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRL-LPDHLQLKDILR 88 (99)
T ss_dssp --CEEEEEEC-TTSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEE-ECTTSBTHHHHT
T ss_pred CCeEEEEEEc-CCCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEE-CCCCCCHHHHhc
Confidence 4557777743 222110 11345799999999999999876 3333222334457877 457788887643
No 85
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=55.55 E-value=10 Score=25.09 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=40.5
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.++.. ...+.++++. +- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~-q~L~~~g~~-L~d~~tL~~~----~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDY----NIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEE-CCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHH-eEEEECCeE-CcCcccHHHh----ccCCCCeeEEEee
Confidence 356899999999999999999998764 444557777 3556666543 22 3446666654
No 86
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.06 E-value=15 Score=22.86 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=41.1
Q ss_pred eEEecCCcchHhHHHHHHHh---hcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEeccc
Q psy12247 48 NYVVAYEMTVGHFFYLLRKK---MALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSDV 113 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~---l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 113 (119)
.+-|+.+.||+++...|..+ -+++++. .-|+.+++. ...+.++++. +- ++..|++..+..
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~-qrLi~~Gk~-L~D~~tL~~y----gI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAG-QKLIYAGKI-LNDDTALKEY----KIDEKNFVVVMVTKP 77 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTT-EEEEETTEE-CCTTSBGGGG----TCCSSSEEEEEESSC
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhh-EEEEECCEE-CCCcCcHHHC----CCCCCCEEEEEEeCC
Confidence 35688999999999999998 4576553 445567887 4566677653 33 345777776543
No 87
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.96 E-value=12 Score=23.48 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=32.3
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+-|+.+.||++|...|..+.+++++.-- |+.+++.+ .|.+|+++
T Consensus 31 i~v~~~~TV~~LK~~I~~~tgip~~~Qr-L~~~Gk~L--dd~tL~~~ 74 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSITGLPPAMQK-VMYKGLVP--EDKTLREI 74 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHHCSCSTTCC-CBSSSBCC--SSSBHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeE-EEECCeeC--CcCcHHHC
Confidence 5689999999999999999999865322 33477774 45566654
No 88
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=52.66 E-value=13 Score=25.37 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=40.1
Q ss_pred ceEEecCCcchHhHHHHHHHhhcCCCC-CeEEEEEc--Ce-ec---CCcCchHHHHHhHhcC
Q psy12247 47 SNYVVAYEMTVGHFFYLLRKKMALRPE-EACFFFIE--SM-IV---PADSTRMETLSQRFAD 101 (119)
Q Consensus 47 ~Kflvp~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn--~~-~~---p~~~~~m~~lY~~~kd 101 (119)
.-|.|.+++|+++|...|-+.++++++ ..++..++ |. .- +..+++|+..+....+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 358999999999999999999999764 67888777 32 22 3345566666665543
No 89
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=52.38 E-value=13 Score=25.07 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=41.3
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEE-EEcCeecCCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFF-FIESMIVPADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl-~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
+-|+.+.||+++...|....++++++--.+ |-+++. ...+.++++. .= ++..|++...
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~-L~d~~tL~~y----~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVA-LQDRVPLASQ----GLGPGSTVLLVVD 76 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCB-CCTTSCGGGG----TCCTTCEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCC-CCCCCCHHHc----CCCCCCEEEEEcc
Confidence 468899999999999999999988644444 436776 4667777653 22 3557777665
No 90
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=52.04 E-value=36 Score=24.10 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=25.5
Q ss_pred cceEEecCCcchHhHHHHHHHhhcCCCCC
Q psy12247 46 RSNYVVAYEMTVGHFFYLLRKKMALRPEE 74 (119)
Q Consensus 46 k~Kflvp~~~tv~~~~~~lRk~l~l~~~~ 74 (119)
...+.||.+.|+.++=.+|+.-++.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 46789999999999999999999987643
No 91
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.03 E-value=7.9 Score=25.46 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=44.2
Q ss_pred EecCCcchHhHHHHHHHhhcCCCC--------------CeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEecccc
Q psy12247 50 VVAYEMTVGHFFYLLRKKMALRPE--------------EACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSDVN 114 (119)
Q Consensus 50 lvp~~~tv~~~~~~lRk~l~l~~~--------------~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~~~ 114 (119)
-|+.+.||+++...|..+.++++. ...-|..+++.+-..+.+|++ |+- ++.+|++.-....
T Consensus 23 ~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d----ygI~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 23 VVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD----YGIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp EECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH----HTCCSSEEEEEEECSCS
T ss_pred EECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH----cCCCCCCEEEEEehhcc
Confidence 488999999999999999887652 234555677774445678886 232 4557887766555
Q ss_pred ccc
Q psy12247 115 IFV 117 (119)
Q Consensus 115 ~fG 117 (119)
.+|
T Consensus 99 ~~~ 101 (105)
T 1v2y_A 99 KSG 101 (105)
T ss_dssp CCC
T ss_pred CCC
Confidence 444
No 92
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.84 E-value=28 Score=23.56 Aligned_cols=58 Identities=2% Similarity=-0.067 Sum_probs=41.8
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEecc
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSD 112 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~ 112 (119)
.-++.+.||++|...|-...+.+++. +=|.-+++. ...+++|++ |+= +++-++|.-.+
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~-qrLIy~GKi-LKD~eTL~~----~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSV-LQIRYSGKI-LKNNETLVQ----HGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTT-EEEEETTEE-ECSSCCHHH----HSCCSSCEEEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHH-EEEEECCeE-cCCcchHHH----cCCCCCCEEEEEEec
Confidence 35889999999999999999988774 556667777 567888875 444 34455554433
No 93
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=51.14 E-value=20 Score=24.06 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=42.6
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
.++|-|.|.-.. + ....|.|..+.++..++....++.+++...--|+| ++.- ...+.|..+|
T Consensus 38 ~~~I~LKV~~qd-g-----~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF-DG~r-I~~~~TP~dL 99 (115)
T 3kyd_D 38 GEYIKLKVIGQD-S-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQR-IADNHTPKEL 99 (115)
T ss_dssp -CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE-TTEE-CCTTCCTTTT
T ss_pred CCeEEEEEEcCC-C-----CEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE-CCeE-CCCCCCHHHc
Confidence 467777773321 1 23468999999999999999999999988666666 5544 2334555444
No 94
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=50.67 E-value=29 Score=23.73 Aligned_cols=41 Identities=7% Similarity=0.166 Sum_probs=33.1
Q ss_pred CCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEc
Q psy12247 40 LLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIE 81 (119)
Q Consensus 40 ~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 81 (119)
.+|+..-.-..|..+.+|++++..|-+++++.+.+- |-+|.
T Consensus 17 ~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp ECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred EcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 356677778899999999999999999999986544 44443
No 95
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=50.39 E-value=21 Score=22.66 Aligned_cols=62 Identities=6% Similarity=0.077 Sum_probs=42.0
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+++|-|.|.-. . -+...|.|..+.+++.++..++++.++++++--|+| ++.- ...+.|.+++
T Consensus 5 ~~~i~ikVk~~-~-----g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~-l~~~~Tp~dl 66 (94)
T 2io1_B 5 NDHINLKVAGQ-D-----GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQP-INETDTPAQL 66 (94)
T ss_dssp -CEEEEEEECT-T-----SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEE-CCTTCCTTTT
T ss_pred CCeEEEEEECC-C-----CCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE-CCEE-cCCCCCHHHc
Confidence 35566666422 1 134568899999999999999999999987655555 5554 3345666554
No 96
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.17 E-value=26 Score=22.60 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=39.4
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEE-cCeecCCcCchHHHHHhHhcCCCCeEEEEeccc
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFI-ESMIVPADSTRMETLSQRFADKDGLIYMVYSDV 113 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~V-n~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 113 (119)
.-|+.+.||++|...|..+-+++++.--.++. .++ ...+.+++++ .-+ ....|+|.....
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk--L~D~~tLs~~--~I~-~gstL~lvl~~~ 83 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD--VEDSTVLKSL--HLP-KNNSLYVLTPDL 83 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC--CCTTSBHHHH--CCC-SEEEEEECCSSS
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC--CCCcCCHHHc--CCC-CCCEEEEEecCC
Confidence 45889999999999999999998764433432 344 3556677766 112 234666655443
No 97
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=47.78 E-value=25 Score=23.60 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=41.7
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.++++++ .-|+.+++. ...+.++++. .=.++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~G~~-L~d~~tL~~y---~i~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDL-FWLTFEGKP-LEDQLPLGEY---GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEE-CCTTSBGGGG---TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHH-EEEEECCee-cCCCCCHHHc---CCCCCCEEEEEEe
Confidence 356899999999999999999998764 445567877 4556676653 1123557777654
No 98
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=47.62 E-value=12 Score=23.42 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=20.8
Q ss_pred EEecCCcchHhHHHHHHHhhcCC
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALR 71 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~ 71 (119)
..||.+.++.+|..-|+.++++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 36999999999999999999874
No 99
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=46.15 E-value=4.2 Score=27.13 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+-|+.+.||+++...|..+.++++++- -|+.++.. ...+.++++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~-L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQ-LEDGRTLSDY 59 (128)
T ss_dssp -----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHE-EEEECCEE-CCCCCchhhh
Confidence 458889999999999999988887643 34456666 4556667664
No 100
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=45.07 E-value=25 Score=24.13 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=41.3
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.++++++- -|+.+++. ...+.++++. .- ++..|++...
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Q-rL~~~g~~-L~d~~tL~~~----~i~~~~~l~l~~~ 92 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQ-LEDGRTLSDY----NIQKESTLHLVLR 92 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEE-CCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCcc-ccccCCHhHc----CCcccceeeeeec
Confidence 3569999999999999999999987643 44457777 5667777663 22 3446666644
No 101
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=41.44 E-value=33 Score=23.90 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=42.0
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
.+-|+.+.||+++...|..+.++++++- -|+.+++. ...+.++++. .- .++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~-L~D~~tL~~y--~I-~~gstI~Lvlr 72 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQ-LEDGRTLSDY--NI-QKESTLHLVLR 72 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEE-CCTTSBGGGG--TC-CTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHE-EEEECCcc-ccCcCcHHHc--CC-CCCCEEEEEEE
Confidence 3568899999999999999999988754 45567777 4667777764 11 13446776654
No 102
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.20 E-value=62 Score=19.97 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=33.5
Q ss_pred CcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCC-CeEEE
Q psy12247 27 NCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPE-EACFF 78 (119)
Q Consensus 27 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~-~slfl 78 (119)
..|.|.|..... + .....-|+.+.||+++...|..+.+++++ +.|++
T Consensus 6 ~~v~l~I~~~~~---~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 6 SGVMVFISSSLN---S--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CCEEEEEEETTS---S--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred cEEEEEEEECCC---C--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 457777755321 1 23445799999999999999999999865 45544
No 103
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.78 E-value=23 Score=23.59 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCCCeEEEEEcCeecCCcCchHHHHHhHhcCC--------CCe-EEEEecc
Q psy12247 71 RPEEACFFFIESMIVPADSTRMETLSQRFADK--------DGL-IYMVYSD 112 (119)
Q Consensus 71 ~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~--------DGf-Lyl~Ys~ 112 (119)
+++..|+|||+|-.-+-....|.+++..|... .|| =+|.|.+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~ 71 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFES 71 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESS
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECC
Confidence 46788999999854345556778888888652 254 5566654
No 104
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.07 E-value=27 Score=21.14 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=20.1
Q ss_pred EEEcCeecCCcCchHHHHHhHhcC--------CCCeEEEEeccc
Q psy12247 78 FFIESMIVPADSTRMETLSQRFAD--------KDGLIYMVYSDV 113 (119)
Q Consensus 78 l~Vn~~~~p~~~~~m~~lY~~~kd--------~DGfLyl~Ys~~ 113 (119)
|||.| + ......|.+++..|.. ..||-+|.|.+.
T Consensus 18 l~V~n-~-~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-E-DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-S-SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-C-CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 45566 3 4445566666666642 357777777654
No 105
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=38.93 E-value=6.4 Score=27.49 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+-|+.+.||+++...|..+.++++++- -|+.++.. ...+.+|+++
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~-L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQ-LEDGRTLSDY 59 (152)
T ss_dssp -----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEE-ccccCcHHHc
Confidence 358899999999999999999887643 44456766 4566777764
No 106
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=36.98 E-value=54 Score=18.90 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=25.3
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCC
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPA 87 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~ 87 (119)
..-++...|+++++..| ++++. .+-+.||+.++|.
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~-~v~vavN~~~v~~ 43 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQA-GAALAINQQIVPR 43 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCS-SEEEEETTEEECH
T ss_pred EEEcCCCCcHHHHHHHc----CCCCC-CEEEEECCEECCc
Confidence 34567788999987655 56544 5679999999664
No 107
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=36.73 E-value=23 Score=22.97 Aligned_cols=36 Identities=8% Similarity=0.213 Sum_probs=23.4
Q ss_pred EEEEcCeecCCcCchHHHHHhHhcCC--------CCeEEEEecccc
Q psy12247 77 FFFIESMIVPADSTRMETLSQRFADK--------DGLIYMVYSDVN 114 (119)
Q Consensus 77 fl~Vn~~~~p~~~~~m~~lY~~~kd~--------DGfLyl~Ys~~~ 114 (119)
-|||+| + .-..+.|.+++..|+.. -||-+|.|.+.+
T Consensus 41 ~lfVgn-l-~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 41 TLYVYG-E-DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 84 (121)
T ss_dssp EEEEEC-S-SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHH
T ss_pred EEEEcC-C-CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHH
Confidence 456666 3 55666777777777542 578888876543
No 108
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.18 E-value=47 Score=21.48 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=42.6
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
+++|-|.|.-. . -....|.|..+.++..++....++.++++..--|+|=+..+ ..+.|..+|
T Consensus 22 ~~~I~IkVk~~-~-----g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l--~~~~Tp~dl 83 (104)
T 1wz0_A 22 NDHINLKVAGQ-D-----GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI--NETDTPAQL 83 (104)
T ss_dssp SCCEEEEEECS-S-----SCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC--CTTSCTTTT
T ss_pred CCeEEEEEECC-C-----CCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc--CCCCCHHHc
Confidence 34565666321 1 13456899999999999999999999998866666654444 344565554
No 109
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=36.00 E-value=67 Score=18.85 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=25.6
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCc
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPAD 88 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~ 88 (119)
+-++...|++++... |++++. .+.+.||+.++|..
T Consensus 18 ~~~~~~~tv~~Ll~~----l~~~~~-~v~vavN~~~v~~~ 52 (70)
T 1ryj_A 18 LESGAPRRIKDVLGE----LEIPIE-TVVVKKNGQIVIDE 52 (70)
T ss_dssp EEESSCCBHHHHHHH----TTCCTT-TEEEEETTEECCTT
T ss_pred EECCCCCcHHHHHHH----hCCCCC-CEEEEECCEECCCc
Confidence 567888899998654 466654 46799999996653
No 110
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=35.21 E-value=30 Score=22.10 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=45.1
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEE----ecCCcchHhHHHHH-HHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhc
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYV----VAYEMTVGHFFYLL-RKKMALRPEEACFFFIESMIVPADSTRMETLSQRFA 100 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kfl----vp~~~tv~~~~~~l-Rk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~k 100 (119)
+..+-|.|.-. ..++|- |+.+.||+++...| ..+-++++++ .=|..+++. ...+.+|++ |+
T Consensus 17 ~~~m~I~VKtl--------~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~-QrLi~~Gk~-L~D~~tL~d----y~ 82 (98)
T 4a20_A 17 NAAVHLTLKKI--------QAPKFSIEHDFSPSDTILQIKQHLISEEKASHISE-IKLLLKGKV-LHDNLFLSD----LK 82 (98)
T ss_dssp -CCEEEEEEEC--------SSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGG-EEEEETTEE-ECTTCBGGG----SC
T ss_pred CCCEEEEEEcC--------CCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhh-EEEEECCEE-CcCcCCHHH----cC
Confidence 45566666442 233442 45999999999998 6666777664 345557777 556777776 33
Q ss_pred C--CCCeEEEEec
Q psy12247 101 D--KDGLIYMVYS 111 (119)
Q Consensus 101 d--~DGfLyl~Ys 111 (119)
- ++.+|++.-+
T Consensus 83 I~~~g~ti~lmvs 95 (98)
T 4a20_A 83 VTPANSTITVMIK 95 (98)
T ss_dssp CBTTBCEEEEEEC
T ss_pred cCCCCCEEEEEEe
Confidence 2 3557776543
No 111
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=34.88 E-value=29 Score=25.01 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=40.1
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEe
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVY 110 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Y 110 (119)
.+-|+.+.||+++...|..+.++++++- -|+.+++. ...+.+|++. .- ++..|+|..
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~Q-rLi~~Gk~-L~D~~tL~dy----gI~~gstI~Lvl 176 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQ-LEDGRTLSDY----NIQKESTLHLVL 176 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEE-CCTTCBGGGG----TCCTTCEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHE-EEEECCEE-CCCCCCHHHC----CCCCCCEEEEEE
Confidence 3568999999999999999999987533 34457777 4567777764 22 344666654
No 112
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=34.77 E-value=65 Score=21.40 Aligned_cols=69 Identities=9% Similarity=0.127 Sum_probs=47.5
Q ss_pred cce--EEEEcCCCCCCCCCCcc----eE-EecCCcchHhHHHHHHHhhcCCCC----CeEEEEEcC-------eecCCcC
Q psy12247 28 CAF--VILERSPSALLPQMPRS----NY-VVAYEMTVGHFFYLLRKKMALRPE----EACFFFIES-------MIVPADS 89 (119)
Q Consensus 28 ~ip--VIvE~~~~~~~p~L~k~----Kf-lvp~~~tv~~~~~~lRk~l~l~~~----~slfl~Vn~-------~~~p~~~ 89 (119)
.+| .|||..... +..+.. -| +||++..|.|++...=.+|+...+ ..=-+-|+| .+.+.++
T Consensus 7 mlPV~CVVE~~~~~--~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p~ 84 (105)
T 3tuo_A 7 MLPVFCVVEHYENA--IEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAPD 84 (105)
T ss_dssp EEEEEEEEEEECCC--SSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCTT
T ss_pred ceeeEEEEEecccc--cccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCch
Confidence 456 477876432 222221 24 899999999999999999997732 233466776 6667889
Q ss_pred chHHHHHhH
Q psy12247 90 TRMETLSQR 98 (119)
Q Consensus 90 ~~m~~lY~~ 98 (119)
.|+|++-.+
T Consensus 85 ~TV~d~L~e 93 (105)
T 3tuo_A 85 ATVADMLQD 93 (105)
T ss_dssp CBHHHHHTT
T ss_pred hhHHHHHHH
Confidence 999988643
No 113
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=34.53 E-value=86 Score=19.67 Aligned_cols=65 Identities=11% Similarity=-0.008 Sum_probs=41.5
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCC-eEEEEEcCee---cCCcCchHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEE-ACFFFIESMI---VPADSTRMET 94 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~-slfl~Vn~~~---~p~~~~~m~~ 94 (119)
++.|.|.|.-.. +. -...-.-|+.+.||+++...|..+.++++++ .|++.=++++ +-..+.+|++
T Consensus 13 ~~~v~l~It~s~-~~---~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSH-ND---AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESS-CS---CEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECC-CC---ceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 567778775421 11 0123457999999999999999999998764 4444322442 2355666765
No 114
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=33.64 E-value=41 Score=27.83 Aligned_cols=59 Identities=7% Similarity=0.197 Sum_probs=41.6
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEc---Ceec-CC-cCchHHHHHhHhcCCCC-eEEEE
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIE---SMIV-PA-DSTRMETLSQRFADKDG-LIYMV 109 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn---~~~~-p~-~~~~m~~lY~~~kd~DG-fLyl~ 109 (119)
..|+.+.+++++...||++++++++..|=||=. +..- .. ++.++.+.+++-. || .|+.+
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~--~GdII~fQ 215 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM--DGDIIVFQ 215 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC--TTEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhccc--CCCEEEEE
Confidence 679999999999999999999999988888743 1121 12 4567776664443 45 44444
No 115
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=33.39 E-value=1.3e+02 Score=21.68 Aligned_cols=61 Identities=7% Similarity=0.007 Sum_probs=42.1
Q ss_pred eEEecCCcchHhHHHHHHHhhcCCCC--CeEEEEE-cCee--cCCcCchHHHHHhHhcCCCCeEEEEec
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMALRPE--EACFFFI-ESMI--VPADSTRMETLSQRFADKDGLIYMVYS 111 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~l~~~--~slfl~V-n~~~--~p~~~~~m~~lY~~~kd~DGfLyl~Ys 111 (119)
...++...|+.++...+++.++++++ -.|+.+- ++++ +-..+.+|.++ .-.+|..|.|-+.
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~---~l~~~Q~illE~r 208 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA---GLYQGQVLVIEQK 208 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHH---TCCTTCEEEEEEC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHh---CCCCCCEEEEEEe
Confidence 36789999999999999999999875 5666654 3443 23445677665 3334556666655
No 116
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=32.81 E-value=44 Score=22.50 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=45.1
Q ss_pred ecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhc-CC-------CCeEEEEeccccccc
Q psy12247 51 VAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFA-DK-------DGLIYMVYSDVNIFV 117 (119)
Q Consensus 51 vp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~k-d~-------DGfLyl~Ys~~~~fG 117 (119)
|..+.||+++...|..+.++++++-- |+-+++. ...+.+|++ |+ .. +--|++.+...++|.
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQr-LI~~Gk~-LeD~kTL~d----y~I~~~ta~~q~~atl~Lvlr~~~~fE 86 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQR-LYKDDQL-LDDGKTLGE----CGFTSQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEE-EEETTEE-CCTTSBTTT----TTCCGGGSBTTBCEEEEEEECCSSCCC
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeE-EEeCCeE-CCCcCCHHH----cCCCcCcccCCCCCEEEEEEecCCCcc
Confidence 78999999999999999999886543 3347777 566777765 22 12 558999888766664
No 117
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.45 E-value=62 Score=20.96 Aligned_cols=43 Identities=7% Similarity=0.154 Sum_probs=27.6
Q ss_pred CCCCCeEEEEEcCeecCCcC-----chHHHHHhHhc-C----CCCeEEEEecccc
Q psy12247 70 LRPEEACFFFIESMIVPADS-----TRMETLSQRFA-D----KDGLIYMVYSDVN 114 (119)
Q Consensus 70 l~~~~slfl~Vn~~~~p~~~-----~~m~~lY~~~k-d----~DGfLyl~Ys~~~ 114 (119)
.+|.+++ |||+|-- -..+ ..|.+|+.+|. . .-||-||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~-~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLP-ANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCC-TTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCC-CcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4567775 7788722 1112 23678999995 2 3589999887754
No 118
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=32.39 E-value=32 Score=25.52 Aligned_cols=61 Identities=7% Similarity=0.102 Sum_probs=43.3
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHH
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETL 95 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~l 95 (119)
.++|-|-|. . .-....|.|..+.++..++....++.++++..--|+| ++.- ...+.|..+|
T Consensus 55 ~e~InLKVk-~------dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqR-I~~ddTPeDL 115 (207)
T 3tix_A 55 ETHINLKVS-D------GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIE-IQADQTPEDL 115 (207)
T ss_dssp CCEEEEEEE-C------SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEE-CCSSCCTTTT
T ss_pred CCcEEEEEe-c------CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCee-cCCCCCHHHc
Confidence 345666662 1 2245679999999999999999999999987766777 5544 2335555544
No 119
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=32.38 E-value=29 Score=21.13 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=27.4
Q ss_pred eEEecCCcchHhHHHHHHHhhc------CCCC----CeEEEEEcCeecC
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMA------LRPE----EACFFFIESMIVP 86 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~------l~~~----~slfl~Vn~~~~p 86 (119)
.+-+|...|+++++..|..+.. +..+ ..+-++||+..++
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~ 69 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA 69 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC
Confidence 3456778899999999987652 2221 2378999999854
No 120
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=31.68 E-value=1.2e+02 Score=20.34 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=58.3
Q ss_pred cceEEEEcCCCCCCC-CCCcceEE-ecCCcchHhHHHHHHHhhcCCC----------------CCeEEEEEc---Cee-c
Q psy12247 28 CAFVILERSPSALLP-QMPRSNYV-VAYEMTVGHFFYLLRKKMALRP----------------EEACFFFIE---SMI-V 85 (119)
Q Consensus 28 ~ipVIvE~~~~~~~p-~L~k~Kfl-vp~~~tv~~~~~~lRk~l~l~~----------------~~slfl~Vn---~~~-~ 85 (119)
-|-++..++|.--.. ...+.+|+ -+.+.||.++-..|.-||.|+. ....-+||- |.+ .
T Consensus 3 EiELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~ 82 (111)
T 3gs2_A 3 EIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTV 82 (111)
T ss_dssp EEEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEE
T ss_pred ceEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEE
Confidence 355677777643111 22456774 7899999999999988887651 123334444 444 3
Q ss_pred CCcCchHHHHHhHhcCCCCeEEEEecc
Q psy12247 86 PADSTRMETLSQRFADKDGLIYMVYSD 112 (119)
Q Consensus 86 p~~~~~m~~lY~~~kd~DGfLyl~Ys~ 112 (119)
.+.++++.++-++|=-.+-=|-|-||-
T Consensus 83 L~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 83 LDGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CCTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred ccCcccHHHHhhhhccCCCCeeEEecc
Confidence 688999999999995578888888873
No 121
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=31.21 E-value=25 Score=21.55 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=22.4
Q ss_pred ecCCcchHhHHHHHHHhhcCCC-CCeEEE
Q psy12247 51 VAYEMTVGHFFYLLRKKMALRP-EEACFF 78 (119)
Q Consensus 51 vp~~~tv~~~~~~lRk~l~l~~-~~slfl 78 (119)
|+.+.|++++...|...++++. ..++++
T Consensus 20 v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 20 ATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred cCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 6788999999999999998863 345544
No 122
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=30.79 E-value=23 Score=21.04 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCcchHhHHHHHHHhhcCCCC-CeEEEEEcCeecCCcCch
Q psy12247 53 YEMTVGHFFYLLRKKMALRPE-EACFFFIESMIVPADSTR 91 (119)
Q Consensus 53 ~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn~~~~p~~~~~ 91 (119)
...|+++++..|..+-++..- +.+-+.||+.+++..++.
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~ 58 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTP 58 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcC
Confidence 567999998888765333221 567899999885544443
No 123
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=30.14 E-value=86 Score=23.72 Aligned_cols=59 Identities=10% Similarity=0.215 Sum_probs=39.8
Q ss_pred CcceE-EecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCC-CCeEEEEeccc
Q psy12247 45 PRSNY-VVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADK-DGLIYMVYSDV 113 (119)
Q Consensus 45 ~k~Kf-lvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~-DGfLyl~Ys~~ 113 (119)
+..-| .=..+++..+|...++..-+-.|+. ..|+ -..+.++|++..++ |..|+++.|+.
T Consensus 35 ~~~~y~~D~~di~~~efy~~~~~~~~~~p~T---------Sqps-~~~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 35 DGETYYRDGVDITRDECYQRMVDDPKLFPKT---------SLPS-VESYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSSCEEEBTTTBCHHHHHHHHHHCTTCCCEE---------ECCC-HHHHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCEEEecCCCCCCHHHHHHHHHhCCCCCcee---------cCCC-HHHHHHHHHHHHHCCCeEEEEECCCc
Confidence 55556 5556899999999997641122332 2244 45788888887653 78999998874
No 124
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.10 E-value=1.2e+02 Score=24.93 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=47.5
Q ss_pred cceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEc------C-eecCCcCchHHHHHhH
Q psy12247 28 CAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIE------S-MIVPADSTRMETLSQR 98 (119)
Q Consensus 28 ~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn------~-~~~p~~~~~m~~lY~~ 98 (119)
||.|.+... ..|.-+.-..-++..+|.+++...+..+|+++|..=-|.-+| + .+....+.++.++...
T Consensus 239 rv~V~f~~~---~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~ 313 (530)
T 2ylm_A 239 RVDVIFCDK---TIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQF 313 (530)
T ss_dssp EEEEEEEET---TSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTT
T ss_pred ceEEEEeec---CCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhc
Confidence 777777653 233445556679999999999999999999998764443342 1 2323567888888854
No 125
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=30.09 E-value=46 Score=21.42 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCee
Q psy12247 42 PQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMI 84 (119)
Q Consensus 42 p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~ 84 (119)
|...+.+..|.++.++.|++..--++.++++++ --|.-|++.
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~-~~Lkh~~k~ 58 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSE-YDLKFQRTV 58 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGG-CEEEETTEE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhh-CeEEeCCEe
Confidence 345788899999999999999999999998764 345555655
No 126
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=29.71 E-value=49 Score=19.93 Aligned_cols=38 Identities=5% Similarity=0.240 Sum_probs=23.3
Q ss_pred EEEEcCeecCCcCchHHHHHhHhcC---------CCCeEEEEecccc
Q psy12247 77 FFFIESMIVPADSTRMETLSQRFAD---------KDGLIYMVYSDVN 114 (119)
Q Consensus 77 fl~Vn~~~~p~~~~~m~~lY~~~kd---------~DGfLyl~Ys~~~ 114 (119)
=|||+|----..++.|.+++.+|+. .-||-+|.|.+.+
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 3556553211244467777777763 3589999987654
No 127
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=29.30 E-value=81 Score=22.08 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=29.6
Q ss_pred CCCCeEEEEEcCeecCCcCchHHHHHhHhcCC----------CCeEEEEeccc
Q psy12247 71 RPEEACFFFIESMIVPADSTRMETLSQRFADK----------DGLIYMVYSDV 113 (119)
Q Consensus 71 ~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~----------DGfLyl~Ys~~ 113 (119)
+++..+.|||+|-.-+-....|.++|..|... .||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 46678889999865345666788999988642 34666666543
No 128
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=29.28 E-value=51 Score=20.73 Aligned_cols=37 Identities=8% Similarity=-0.000 Sum_probs=26.4
Q ss_pred cceEEecCC-cchHhHHHHHHHhhcCCCCCeEEEEEcCeecCC
Q psy12247 46 RSNYVVAYE-MTVGHFFYLLRKKMALRPEEACFFFIESMIVPA 87 (119)
Q Consensus 46 k~Kflvp~~-~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~ 87 (119)
...+-++.. .|+++++.. |++++. .+-+.||+.++|.
T Consensus 27 Ge~~el~~~~~Tv~dLL~~----L~~~~~-~vaVavNg~iV~~ 64 (87)
T 1tyg_B 27 GKDVKWKKDTGTIQDLLAS----YQLENK-IVIVERNKEIIGK 64 (87)
T ss_dssp TEEECCSSSCCBHHHHHHH----TTCTTS-CCEEEETTEEECG
T ss_pred CEEEECCCCCCcHHHHHHH----hCCCCC-CEEEEECCEECCh
Confidence 344556777 899998664 466654 5669999999775
No 129
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=28.92 E-value=39 Score=22.74 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=23.8
Q ss_pred hcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC
Q psy12247 68 MALRPEEACFFFIESMIVPADSTRMETLSQRFAD 101 (119)
Q Consensus 68 l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd 101 (119)
+.-.++.-|.|||+|-.-+-..+.|.+|+..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 3445788999999996546666778888888864
No 130
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=28.85 E-value=41 Score=24.25 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=17.6
Q ss_pred HHHHhhcCCCCCeEEEEEc
Q psy12247 63 LLRKKMALRPEEACFFFIE 81 (119)
Q Consensus 63 ~lRk~l~l~~~~slfl~Vn 81 (119)
-||++|++.+++.|.+++.
T Consensus 21 eiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 21 EIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHcCcCCCCEEEEEEe
Confidence 4799999999999999997
No 131
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=28.56 E-value=46 Score=20.12 Aligned_cols=58 Identities=3% Similarity=0.053 Sum_probs=35.2
Q ss_pred ecCCcchHhHHHHHHHhhcCCCC-CeEEEEEc-CeecC-C-cCchHHHHHhHhcCCCCeEEEEecc
Q psy12247 51 VAYEMTVGHFFYLLRKKMALRPE-EACFFFIE-SMIVP-A-DSTRMETLSQRFADKDGLIYMVYSD 112 (119)
Q Consensus 51 vp~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn-~~~~p-~-~~~~m~~lY~~~kd~DGfLyl~Ys~ 112 (119)
|+.+.||+++...|..+.+++++ +.| +|-. ++.+. + .+.+++++= -+ ....|++..+.
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL-~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRI-LVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCC-EESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEE-EeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 67899999999999999998754 343 3311 23322 2 455665431 11 23467776654
No 132
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=28.48 E-value=62 Score=19.92 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=25.4
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCC-CeEEEE
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPE-EACFFF 79 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~-~slfl~ 79 (119)
--++.++||+++...|..+-+++++ +.|.++
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 3589999999999999999999875 455443
No 133
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=28.07 E-value=93 Score=24.09 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=38.5
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEE
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMV 109 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~ 109 (119)
.-|+.+.||+++...|..+.++++++ .=|+.+++. ...+.+|++. .- ++..|+|.
T Consensus 248 leV~~s~TV~dLK~kI~~~~GIp~~~-QRLi~~Gk~-L~D~~TLsdy----gI~~gstL~Lv 303 (307)
T 3ai5_A 248 LEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQ-LEDGRTLSDY----NIQKESTLHLV 303 (307)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGG-CEEEETTEE-CCTTSBTGGG----TCCTTCEEEEE
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHH-EEEEeCCee-cCCCCCHHHc----CCCCCCEEEEE
Confidence 46899999999999999999998763 334557777 4556666543 22 33456654
No 134
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=27.73 E-value=53 Score=20.68 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=22.3
Q ss_pred EEEcCeecCCcCchHHHHHhHhcC-------CCCeEEEEecccc
Q psy12247 78 FFIESMIVPADSTRMETLSQRFAD-------KDGLIYMVYSDVN 114 (119)
Q Consensus 78 l~Vn~~~~p~~~~~m~~lY~~~kd-------~DGfLyl~Ys~~~ 114 (119)
|||.|----...+.|.+++..|.. .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 555543212345667777777754 1388888887654
No 135
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=27.64 E-value=1.1e+02 Score=19.71 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=33.0
Q ss_pred cceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCee
Q psy12247 46 RSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMI 84 (119)
Q Consensus 46 k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~ 84 (119)
--++-|.++.|+..|...|-++-++++.+-..||=+..+
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l 63 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 63 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCcc
Confidence 345889999999999999999999999887888776444
No 136
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=27.43 E-value=54 Score=23.94 Aligned_cols=48 Identities=6% Similarity=0.129 Sum_probs=35.9
Q ss_pred CcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHH
Q psy12247 45 PRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMET 94 (119)
Q Consensus 45 ~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~ 94 (119)
....|.|..+.++..++.....+.+++..+--|+| ++.- ...+.|..+
T Consensus 39 ~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F-dG~r-I~~~~TP~d 86 (200)
T 3pge_A 39 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIR-IQADQTPED 86 (200)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE-TTEE-CCTTCCTTT
T ss_pred CEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE-CCEE-cCCCCCHHH
Confidence 45679999999999999999999999987666666 5444 233444433
No 137
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=27.08 E-value=1.2e+02 Score=19.08 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=35.5
Q ss_pred CCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEc
Q psy12247 26 PNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIE 81 (119)
Q Consensus 26 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn 81 (119)
.+-|+|.|.... .. -...-.-|+.++||+++...|..+.++++++---+|.+
T Consensus 12 ~~~v~l~It~s~-~~---~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 12 DDSVHLHITHAN-LK---SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp CCCEEEEEEETT-SS---CCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred CceEEEEEEECC-CC---ceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 456788885522 11 12334579999999999999999999987644333433
No 138
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=26.63 E-value=43 Score=21.47 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCCcceE
Q psy12247 13 ERIKIGENLARNHPNCAFV 31 (119)
Q Consensus 13 ~R~~e~~~ir~kyp~~ipV 31 (119)
+|+.-++.++.+||++|-|
T Consensus 41 ~RkLIYQ~~~~kfp~~i~v 59 (87)
T 1ug8_A 41 QRKLIYQTLSWKYPKGIHV 59 (87)
T ss_dssp HHHHHHHHHHHHSSSSEEE
T ss_pred HHHHHHHHHHHhcCCceEE
Confidence 4666999999999999843
No 139
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=26.01 E-value=1.1e+02 Score=19.77 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcC
Q psy12247 36 SPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIES 82 (119)
Q Consensus 36 ~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~ 82 (119)
.++++.|++...--|=|...|+.+|-+.|.+.|.-+ -.|-.|-+
T Consensus 17 k~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~---fkyA~VwG 60 (93)
T 2eki_A 17 KPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKE---FKYALVWG 60 (93)
T ss_dssp CCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTT---EEEEEEBS
T ss_pred CCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhh---ccEEEEec
Confidence 456788888775433399999999999998887544 44556643
No 140
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=25.90 E-value=40 Score=19.95 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=23.4
Q ss_pred cCCcchHhHHHHHHHhhc-----CCCCCeEEEEEcCeecC
Q psy12247 52 AYEMTVGHFFYLLRKKMA-----LRPEEACFFFIESMIVP 86 (119)
Q Consensus 52 p~~~tv~~~~~~lRk~l~-----l~~~~slfl~Vn~~~~p 86 (119)
+...|+++++..|..+.. +. ...+.+.||+..++
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~-~~~~~v~vN~~~v~ 61 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALE-DGKLLAAVNQTLVS 61 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHC-CTTCEEEETTEECC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhc-CCCEEEEECCEECC
Confidence 456799999888865421 22 23467999999854
No 141
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=25.61 E-value=41 Score=21.07 Aligned_cols=39 Identities=8% Similarity=0.125 Sum_probs=27.7
Q ss_pred eEEecCCcchHhHHHHHHHhhc-CC---------CCCeEEEEEcCeecC
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMA-LR---------PEEACFFFIESMIVP 86 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~-l~---------~~~slfl~Vn~~~~p 86 (119)
.+-++...|+++++..|..+.. +. ....+-++||+..++
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~ 78 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS 78 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC
Confidence 4456788999999999877631 11 124577999998855
No 142
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=25.54 E-value=85 Score=23.52 Aligned_cols=53 Identities=11% Similarity=0.263 Sum_probs=31.0
Q ss_pred ceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCCCCeEEEEeccc
Q psy12247 47 SNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDV 113 (119)
Q Consensus 47 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 113 (119)
+-|.=..+++..+|...++..-.+ |+. ..|+ +++..+.|.+-|..|+++.|+.
T Consensus 34 ~~y~D~~di~~~efy~~~~~~~~~-p~T---------Sqps----~~~~~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 34 EEFCDDGQLDIHRMLDILEKHKGR-SYT---------ACPG----IDAWLEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp CEEECSTTCCHHHHHHHHHTCCSC-CEE---------ECCC----HHHHHHHHTTCSEEEEEESCTT
T ss_pred EEEecCCCCCHHHHHHHHHhCCCC-cee---------cCCC----HHHHHHHHhcCCcEEEEECCCc
Confidence 335444578888998888753112 121 2143 3444444445578999998874
No 143
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.49 E-value=81 Score=19.38 Aligned_cols=10 Identities=10% Similarity=0.052 Sum_probs=6.4
Q ss_pred CeEEEEeccc
Q psy12247 104 GLIYMVYSDV 113 (119)
Q Consensus 104 GfLyl~Ys~~ 113 (119)
||-+|.|.+.
T Consensus 51 g~afV~f~~~ 60 (108)
T 1x4c_A 51 GTGVVEFVRK 60 (108)
T ss_dssp TEEEEEESSH
T ss_pred CEEEEEECCH
Confidence 6666766654
No 144
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.26 E-value=1.1e+02 Score=18.73 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=30.4
Q ss_pred ceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCC
Q psy12247 47 SNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPA 87 (119)
Q Consensus 47 ~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~ 87 (119)
..+.+|...|+.+|.+.|...++- ..+..-||+...|.
T Consensus 16 ~~~~lp~GaT~~D~A~~Ih~~lg~---~~v~AkVNG~~v~L 53 (78)
T 3hvz_A 16 DVISLPIGSTVIDFAYAIHSAVGN---RMIGAKVDGRIVPI 53 (78)
T ss_dssp CEEEEETTCBHHHHHHHHCHHHHH---TEEEEEETTEEECT
T ss_pred CEEEecCCCCHHHHHHHhhhhhhc---ceEEEEECCEEcCC
Confidence 456799999999999998877754 47888999988553
No 145
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=24.18 E-value=95 Score=23.34 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=37.2
Q ss_pred CcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEeccc
Q psy12247 45 PRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSDV 113 (119)
Q Consensus 45 ~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 113 (119)
+..-|.=..+++..+|...++.. ++ |+.| .|+ -..+.++|++..+ .|..|+++.|+.
T Consensus 35 ~~~~y~D~~di~~~efy~~~~~~-~~-p~TS---------qps-~~~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 35 NGQDYKDGITIEPKQVYDAMRQG-HT-VKTA---------QPS-PLAMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp TTEEEEBTTTBCHHHHHHHHTTT-CC-CEEE---------CCC-HHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhC-CC-CeeC---------CCC-HHHHHHHHHHHHhCCCeEEEEECCCc
Confidence 44456555688999999888754 22 3322 144 3457788887743 367999998864
No 146
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.16 E-value=49 Score=19.61 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=8.1
Q ss_pred ecCCcchHhHHHHHHH
Q psy12247 51 VAYEMTVGHFFYLLRK 66 (119)
Q Consensus 51 vp~~~tv~~~~~~lRk 66 (119)
+|.+.|-.++..++.+
T Consensus 16 Lp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4555555555544433
No 147
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=23.86 E-value=69 Score=21.74 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=44.5
Q ss_pred HHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHH-hhcCCC-------CCeEEEEEcCeecCCcCchH
Q psy12247 21 LARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRK-KMALRP-------EEACFFFIESMIVPADSTRM 92 (119)
Q Consensus 21 ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk-~l~l~~-------~~slfl~Vn~~~~p~~~~~m 92 (119)
.+++|+....|-|-=. ..+=.=.=.-|.||.+|++++|+.-+=. -.+-.| +++-++.-+.-+.|-.+.+|
T Consensus 16 ~~enF~g~qLlYigWd--~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSL 93 (119)
T 3u52_E 16 KVENFHGMQLLYVYWP--DHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASL 93 (119)
T ss_dssp CGGGGTTCEEEEEECT--TCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBT
T ss_pred HHhhCCCCEEEEEEec--CCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhH
Confidence 3566777666666332 1121223356899999999999865433 333222 35566666677888888887
Q ss_pred HHH
Q psy12247 93 ETL 95 (119)
Q Consensus 93 ~~l 95 (119)
++.
T Consensus 94 aen 96 (119)
T 3u52_E 94 KEQ 96 (119)
T ss_dssp TTT
T ss_pred HHc
Confidence 654
No 148
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.50 E-value=1.1e+02 Score=20.17 Aligned_cols=49 Identities=0% Similarity=-0.023 Sum_probs=35.6
Q ss_pred CcceEEecCCcchHhHHHHHHHhh------cCC-CCCeEEEEEcCeecCCcCchHHH
Q psy12247 45 PRSNYVVAYEMTVGHFFYLLRKKM------ALR-PEEACFFFIESMIVPADSTRMET 94 (119)
Q Consensus 45 ~k~Kflvp~~~tv~~~~~~lRk~l------~l~-~~~slfl~Vn~~~~p~~~~~m~~ 94 (119)
+...+-|..+.||+++...|..+. +++ +.+.+=|...+++ ...+.+|++
T Consensus 27 ~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~-LeD~~TL~~ 82 (116)
T 1wgh_A 27 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF-LHGNVTLGA 82 (116)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEE-ECSSCBTTT
T ss_pred CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcC-CCCCCcHHH
Confidence 344567999999999999999843 332 3445667778888 567778876
No 149
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.48 E-value=43 Score=20.48 Aligned_cols=70 Identities=16% Similarity=0.014 Sum_probs=42.9
Q ss_pred CcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcC-chHHHHHhHhcC-CCC
Q psy12247 27 NCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADS-TRMETLSQRFAD-KDG 104 (119)
Q Consensus 27 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~-~~m~~lY~~~kd-~DG 104 (119)
..+-|.|.... + +...+-|+.+.||+++...|..+. ...+.| +.+++. ...+ .+|+++ +- ++.
T Consensus 6 ~~m~i~Vk~~~-g-----~~~~~~v~~~~TV~~LK~~i~~~~--~~~qrL--i~~Gk~-L~D~~~tL~~y----~i~~g~ 70 (95)
T 1wia_A 6 SGINVRLKFLN-D-----TEELAVARPEDTVGTLKSKYFPGQ--ESQMKL--IYQGRL-LQDPARTLSSL----NITNNC 70 (95)
T ss_dssp CSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHSSST--TTTCEE--EETTEE-CCCSSCBTTTT----TCCTTE
T ss_pred CeEEEEEEeCC-C-----CEEEEEECCCCcHHHHHHHHHhhC--cCcEEE--EECCEE-ccCCcCCHHHc----CCCCCC
Confidence 44666665321 1 122356899999999999888776 444444 457877 4445 777653 32 344
Q ss_pred eEEEEec
Q psy12247 105 LIYMVYS 111 (119)
Q Consensus 105 fLyl~Ys 111 (119)
.|+|...
T Consensus 71 ~i~l~~~ 77 (95)
T 1wia_A 71 VIHCHRS 77 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 6777654
No 150
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=23.32 E-value=87 Score=23.46 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=37.9
Q ss_pred CcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcCC-CCeEEEEeccc
Q psy12247 45 PRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADK-DGLIYMVYSDV 113 (119)
Q Consensus 45 ~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd~-DGfLyl~Ys~~ 113 (119)
+..-|.=..+++..+|...+++.-.+ |+. ..|+ -..+.++|++..++ |..|+|+.|+.
T Consensus 33 ~~~~y~D~~di~~~efy~~~~~~~~~-p~T---------Sqps-~~~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 33 SGAIYRDWEEITPTEIFQKVREGAAF-PTT---------SQPS-PEDFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp TTEEEETTTTCCHHHHHHHHHTTCCC-CEE---------ECCC-HHHHHHHHHHHTTSCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-ccc---------CCCC-HHHHHHHHHHHHhCCCeEEEEECCCc
Confidence 44445545678999999988763222 222 2144 34678888888554 77999998864
No 151
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=23.29 E-value=61 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCCCeEEEEEcCee
Q psy12247 62 YLLRKKMALRPEEACFFFIESMI 84 (119)
Q Consensus 62 ~~lRk~l~l~~~~slfl~Vn~~~ 84 (119)
.-||+.|++.+++.+-+.+.+.+
T Consensus 66 keiR~~lgi~~Gd~l~~~~~~~~ 88 (92)
T 2glw_A 66 KALRDVIGIKPGEVIEVLLLGHY 88 (92)
T ss_dssp HHHHHHHTCCTTCEEEEEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEeCcE
Confidence 56899999999999999887655
No 152
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.27 E-value=75 Score=24.08 Aligned_cols=28 Identities=11% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcceEEEEcC
Q psy12247 9 YSLEERIKIGENLARNHPNCAFVILERS 36 (119)
Q Consensus 9 ~~~e~R~~e~~~ir~kyp~~ipVIvE~~ 36 (119)
-|.+||+.-.+.+.+.-..++|||+--.
T Consensus 64 Ls~~Er~~v~~~~~~~~~gr~pviaGvg 91 (307)
T 3s5o_A 64 LTSSERLEVVSRVRQAMPKNRLLLAGSG 91 (307)
T ss_dssp SCHHHHHHHHHHHHHTSCTTSEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCcEEEecC
Confidence 4679999999999988899999999654
No 153
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=22.55 E-value=75 Score=20.13 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=39.2
Q ss_pred EEec-CCcchHhHHHHHHHhhcCCCC-CeEEEEEcCe-----------ec---CCcCchHHHHHhHhcC-CCCeEEEEec
Q psy12247 49 YVVA-YEMTVGHFFYLLRKKMALRPE-EACFFFIESM-----------IV---PADSTRMETLSQRFAD-KDGLIYMVYS 111 (119)
Q Consensus 49 flvp-~~~tv~~~~~~lRk~l~l~~~-~slfl~Vn~~-----------~~---p~~~~~m~~lY~~~kd-~DGfLyl~Ys 111 (119)
.-|. .+.||+++...|..+.++++. +.|+ .++. .+ ...+.+|+++ .- .+-.|||.|.
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~--~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~----gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLS--TNRNLLLAKSPSDFLAFTDMADPNLRISSL----NLAHGSMVYLAYE 94 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCB--SSGGGGTCCSHHHHTTCCSSCCTTCBGGGT----CCCTTCEEECCCS
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEE--ECCccccccCccccccccccCCCCCCHHHC----CCCCCCEEEEEeC
Confidence 4578 899999999999999998764 4443 3433 11 2344556543 22 2447899887
Q ss_pred ccc
Q psy12247 112 DVN 114 (119)
Q Consensus 112 ~~~ 114 (119)
.+.
T Consensus 95 ~~~ 97 (107)
T 1wf9_A 95 GER 97 (107)
T ss_dssp SCC
T ss_pred CCC
Confidence 664
No 154
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.39 E-value=85 Score=18.66 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=5.1
Q ss_pred CeEEEEeccc
Q psy12247 104 GLIYMVYSDV 113 (119)
Q Consensus 104 GfLyl~Ys~~ 113 (119)
||-+|.|.+.
T Consensus 53 g~afV~f~~~ 62 (99)
T 2div_A 53 GYCFVEFADL 62 (99)
T ss_dssp EEEEEECSCH
T ss_pred CEEEEEeCCH
Confidence 4555555443
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.37 E-value=34 Score=20.19 Aligned_cols=12 Identities=8% Similarity=0.468 Sum_probs=7.4
Q ss_pred CCeEEEEecccc
Q psy12247 103 DGLIYMVYSDVN 114 (119)
Q Consensus 103 DGfLyl~Ys~~~ 114 (119)
-||-+|.|.+.+
T Consensus 42 ~g~afV~f~~~~ 53 (88)
T 1wf0_A 42 RAFAFVTFADDQ 53 (88)
T ss_dssp CSCCEEECSCHH
T ss_pred CCEEEEEECCHH
Confidence 467777776543
No 156
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=21.78 E-value=1.8e+02 Score=21.65 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=33.3
Q ss_pred HhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCC--eEEEE
Q psy12247 22 ARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEE--ACFFF 79 (119)
Q Consensus 22 r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~--slfl~ 79 (119)
|+.....+.+-|-- |+=....+.|.+..|+.++...|.++|+|...+ +|++.
T Consensus 11 ~~~~~~~~~~~V~l------ldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~ 64 (296)
T 3qij_A 11 RENLYFQGHCKVSL------LDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIW 64 (296)
T ss_dssp ------CCEEEEEC------TTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEE
T ss_pred CCCCCceEEEEEEc------cCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEE
Confidence 34444555555522 222345678999999999999999999999765 55543
No 157
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=21.53 E-value=1.1e+02 Score=18.23 Aligned_cols=39 Identities=3% Similarity=0.078 Sum_probs=27.3
Q ss_pred eEEecCCcchHhHHHHHHHhhc------C-CCC---CeEEEEEcCeecC
Q psy12247 48 NYVVAYEMTVGHFFYLLRKKMA------L-RPE---EACFFFIESMIVP 86 (119)
Q Consensus 48 Kflvp~~~tv~~~~~~lRk~l~------l-~~~---~slfl~Vn~~~~p 86 (119)
..-++...|+++++..|..+.. + ..+ ..+.+.||+..++
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~ 66 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNIT 66 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGG
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcc
Confidence 3456667899999999987731 1 111 4678999998865
No 158
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=21.51 E-value=79 Score=19.22 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=25.6
Q ss_pred eEEec--CCcchHhHHHHHHHhhcCC-CCCeEEEEEcCeecCCc
Q psy12247 48 NYVVA--YEMTVGHFFYLLRKKMALR-PEEACFFFIESMIVPAD 88 (119)
Q Consensus 48 Kflvp--~~~tv~~~~~~lRk~l~l~-~~~slfl~Vn~~~~p~~ 88 (119)
..-++ ...|+++++. .|+++ +. .+-+-||+.++|..
T Consensus 9 ~~e~~~~~~~Tl~~LL~----~l~~~~~~-~vAVavNg~iVpr~ 47 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLS----ALKVAQAE-YVTVELNGEVLERE 47 (78)
T ss_dssp EEECSSCSCEEHHHHHH----HHTCSCTT-TCCEEETTEECCTT
T ss_pred EEEcCCCCCCcHHHHHH----HcCCCCCC-cEEEEECCEECChH
Confidence 34556 7789999866 45676 44 45589999998764
No 159
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.31 E-value=83 Score=19.56 Aligned_cols=58 Identities=10% Similarity=-0.012 Sum_probs=37.9
Q ss_pred EEecCCcchHhHHHHHHHhhcCCCCCeEEEEEcCeecCCcCchHHHHHhHhcC-CCCeEEEEeccc
Q psy12247 49 YVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFAD-KDGLIYMVYSDV 113 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l~l~~~~slfl~Vn~~~~p~~~~~m~~lY~~~kd-~DGfLyl~Ys~~ 113 (119)
+-|+.+.||++|...|....+++++.-- |+.+++. ...+ ++++ |+= ++..|+|.-+.+
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~Qk-Li~~Gk~-L~D~-tL~~----~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQK-VMVKGGT-LKDD-DWGN----IKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSC-CEETTEE-CCSS-CCCS----CCCCSSCEEECCCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeE-EEECCcC-CCCC-CHHH----CCCCCCCEEEEEecch
Confidence 4589999999999999999999865322 2357777 3444 5544 221 344666655443
No 160
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.91 E-value=1e+02 Score=18.31 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=9.6
Q ss_pred ecCCcchHhHHHHHHHh
Q psy12247 51 VAYEMTVGHFFYLLRKK 67 (119)
Q Consensus 51 vp~~~tv~~~~~~lRk~ 67 (119)
+|.+.|-.++..++.+.
T Consensus 27 L~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 27 LPRDARVSDLKRALREL 43 (97)
T ss_dssp CCTTCCHHHHHHHHHHT
T ss_pred CCCcCcHHHHHHHHHhc
Confidence 45666666665555443
No 161
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.65 E-value=64 Score=24.48 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcceEEEEcCCCCC--CCCC--------CcceEEecCC---cchHhHHHHHHHhhcCCCCCe
Q psy12247 9 YSLEERIKIGENLARNHPNCAFVILERSPSAL--LPQM--------PRSNYVVAYE---MTVGHFFYLLRKKMALRPEEA 75 (119)
Q Consensus 9 ~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~--~p~L--------~k~Kflvp~~---~tv~~~~~~lRk~l~l~~~~s 75 (119)
-|.+||+.-.+...+.-..++|||+--...+. +-.+ -.--.++|+- .+-.+++...+.=..- ..-.
T Consensus 65 Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lP 143 (304)
T 3l21_A 65 TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADA-TELP 143 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTS-CSSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 46799999998888888899999996543321 0000 0011223322 1334444444332221 2456
Q ss_pred EEEEEcCe--ecCCcCchHHHHHhHhcCCCCeEEEEeccc
Q psy12247 76 CFFFIESM--IVPADSTRMETLSQRFADKDGLIYMVYSDV 113 (119)
Q Consensus 76 lfl~Vn~~--~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 113 (119)
++||=+-. -..-..+++.+|- + .+++.-|.+|+-
T Consensus 144 iilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssg 179 (304)
T 3l21_A 144 MLLYDIPGRSAVPIEPDTIRALA-S---HPNIVGVXDAKA 179 (304)
T ss_dssp EEEEECHHHHSSCCCHHHHHHHH-T---STTEEEEEECSC
T ss_pred EEEEeCccccCCCCCHHHHHHHh-c---CCCEEEEECCCC
Confidence 88885411 0012235667775 2 356777887764
No 162
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=20.59 E-value=1.1e+02 Score=20.59 Aligned_cols=45 Identities=7% Similarity=-0.037 Sum_probs=33.5
Q ss_pred EEecCCcchHhHHHHHHHhh-----cCCCC-CeEEEEEcCeecCCcCchHHH
Q psy12247 49 YVVAYEMTVGHFFYLLRKKM-----ALRPE-EACFFFIESMIVPADSTRMET 94 (119)
Q Consensus 49 flvp~~~tv~~~~~~lRk~l-----~l~~~-~slfl~Vn~~~~p~~~~~m~~ 94 (119)
+-++++.||+++...|+... ++++. +..=|..++++ ...+.+|++
T Consensus 32 l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~-LeD~~TLsd 82 (126)
T 1se9_A 32 KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKV-LENSKTVKD 82 (126)
T ss_dssp EEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEE-CCTTSBGGG
T ss_pred eecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeE-CcCCCcHHH
Confidence 56899999999999997654 34442 45667778888 677888885
No 163
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=20.40 E-value=1.8e+02 Score=18.72 Aligned_cols=47 Identities=4% Similarity=-0.083 Sum_probs=33.1
Q ss_pred CcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCC-eEEE
Q psy12247 27 NCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEE-ACFF 78 (119)
Q Consensus 27 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~-slfl 78 (119)
..|.|.|..... + ...-.-|+.+.||+++...|..+.+++++. .|++
T Consensus 5 ~~v~l~V~~~~~---~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~ 52 (122)
T 1t0y_A 5 EVYDLEITTNAT---D--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQL 52 (122)
T ss_dssp CEEEEEEEESSC---C--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CEEEEEEEECCC---C--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 457777755321 1 223457999999999999999999998764 4443
No 164
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=20.16 E-value=59 Score=21.73 Aligned_cols=49 Identities=0% Similarity=-0.023 Sum_probs=35.2
Q ss_pred CcceEEecCCcchHhHHHHHHHhh------cCC-CCCeEEEEEcCeecCCcCchHHH
Q psy12247 45 PRSNYVVAYEMTVGHFFYLLRKKM------ALR-PEEACFFFIESMIVPADSTRMET 94 (119)
Q Consensus 45 ~k~Kflvp~~~tv~~~~~~lRk~l------~l~-~~~slfl~Vn~~~~p~~~~~m~~ 94 (119)
+..-+-|+.+.||+++...|.... +++ +.+.+=|..++++ ...+.+|++
T Consensus 28 ~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~-LeD~~TL~~ 83 (125)
T 2gow_A 28 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF-LHGNVTLGA 83 (125)
T ss_dssp CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSE-EESSCBTGG
T ss_pred CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcC-CCCCCcHHH
Confidence 334567999999999999998732 342 3455667778888 567778876
No 165
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=20.03 E-value=68 Score=24.03 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcceEEEEcCCCCC--CCCC-------C-cceEEecCCc---chHhHHHHHHHhhcCCCCCe
Q psy12247 9 YSLEERIKIGENLARNHPNCAFVILERSPSAL--LPQM-------P-RSNYVVAYEM---TVGHFFYLLRKKMALRPEEA 75 (119)
Q Consensus 9 ~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~--~p~L-------~-k~Kflvp~~~---tv~~~~~~lRk~l~l~~~~s 75 (119)
-|.+||+.-.+...+.-..++|||+--...+. +-.+ . .--.++|+-. +-.++....+.=.. ...-.
T Consensus 50 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~-a~~lP 128 (289)
T 2yxg_A 50 LSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAE-SINLP 128 (289)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH-HCSSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH-hcCCC
Confidence 47799999888888877889999997654331 0000 0 0011222221 33344333332211 11246
Q ss_pred EEEEEcCee--cCCcCchHHHHHhHhcCCCCeEEEEeccc
Q psy12247 76 CFFFIESMI--VPADSTRMETLSQRFADKDGLIYMVYSDV 113 (119)
Q Consensus 76 lfl~Vn~~~--~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~ 113 (119)
+++|=+-.. ..-..+++.+|-+++ +++.-|.+|+-
T Consensus 129 iilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 129 IVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred EEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 888764211 022235678886444 55777777654
Done!