RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12247
         (119 letters)



>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD,
           Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 116

 Score = 96.3 bits (240), Expect = 7e-28
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 1   MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
           MK+ + E +SLE R      +   +P+   VI+E+   + +  + +  Y+V  ++TV  F
Sbjct: 1   MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60

Query: 61  FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
            +++RK++ L  E+A F F++  +  +  T M  L ++  D+DG +Y+ YS  N F
Sbjct: 61  MWIIRKRIQLPSEKAIFLFVDKTVPQSSLT-MGQLYEKEKDEDGFLYVAYSGENTF 115


>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
           GABARAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 94.5 bits (235), Expect = 4e-27
 Identities = 42/116 (36%), Positives = 75/116 (64%), Gaps = 1/116 (0%)

Query: 1   MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
           MKF Y E++  E+R   GE + + +P+   VI+E++P A +  + +  Y+V  ++TVG F
Sbjct: 3   MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 62

Query: 61  FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
           ++L+RK++ LR E+A FFF+ ++I P  +T M  L Q   ++D  +Y+ YSD +++
Sbjct: 63  YFLIRKRIHLRAEDALFFFVNNVIPPTSAT-MGQLYQEHHEEDFFLYIAYSDESVY 117


>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B
           light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 79.8 bits (197), Expect = 2e-21
 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 5   YTEKYSLEERIKIGENLARNHPNCAFVILERSP-SALLPQMPRSNYVVAYEMTVGHFFYL 63
           + ++ + E+R++    +   HP    VI+ER      LP + ++ ++V   + +     +
Sbjct: 6   FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 65

Query: 64  LRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
           +R+++ L   +A F  +    + + ST +  + +   D+DG +YMVY+    F
Sbjct: 66  IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 118


>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP,
          livin) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 23.2 bits (50), Expect = 5.5
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 22 ARNHPNCAFVILERSP 37
          A+  P C F++  +  
Sbjct: 68 AKWFPGCQFLLRSKGQ 83


>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 223

 Score = 23.8 bits (51), Expect = 6.2
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 54  EMTVGHFFYLLRKKMALRPEEACFFFIESMIVP 86
            + + H F+   +K  L PEE     + S+ +P
Sbjct: 191 TVPMDHTFFPSYRKTLLGPEE----ILLSIEIP 219


>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 87

 Score = 22.9 bits (49), Expect = 8.0
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 22 ARNHPNCAFVILERSP 37
          A+  P C F+I  +  
Sbjct: 62 AKWFPRCEFLIRMKGQ 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,901
Number of extensions: 18517
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 12
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)