BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1225
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+G ++EPF LP+K+ PDYY+ IK P SL I LK+ Y TL+ L +LNLMFENA
Sbjct: 36 QGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENA 95
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQENPR 98
K++N +S +Y+ +KLQ++MQ K +E R
Sbjct: 96 KRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P SL I LK+ Y TL+ L +LNLMFENAK++N +S +Y+ +KLQ++MQ K +E
Sbjct: 63 PISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKE 122
Query: 157 FS 158
+
Sbjct: 123 LA 124
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 144 VKLQKLMQR-KVQEF-SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
+ LQ++ + K QE+ +L+ L +L+LMFENAK++N + +Y+ +KLQ++MQ K +E+
Sbjct: 64 ISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 10 GGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAK 69
G +SE F KLP+K PDYY IIK P L TI + +++G Y +++ + +++L+ +NAK
Sbjct: 28 GRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAK 87
Query: 70 KFNPADSRLYRDAVKLQKLMQRKVQE 95
+N S++++DA ++K+ K E
Sbjct: 88 TYNEPGSQVFKDANSIKKIFYMKKAE 113
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 41/67 (61%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L TI + +++G Y +++ + +++L+ +NAK +N S++++DA ++K+ K E
Sbjct: 54 PIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAE 113
Query: 157 FSLNELT 163
+E+
Sbjct: 114 IEHHEMA 120
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
S++ + ++ L+ +NAK +N ++++DA ++K+ K E+
Sbjct: 71 SIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 10 GGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAK 69
G +SE F KLP+K PDYY IIK P L TI + +++G Y +++ + +++L+ +NAK
Sbjct: 29 GRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAK 88
Query: 70 KFNPADSRLYRDAVKLQKLMQRKVQE 95
+N S++++DA ++K+ K E
Sbjct: 89 TYNEPGSQVFKDANSIKKIFYMKKAE 114
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 41/67 (61%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L TI + +++G Y +++ + +++L+ +NAK +N S++++DA ++K+ K E
Sbjct: 55 PIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAE 114
Query: 157 FSLNELT 163
+E+
Sbjct: 115 IEHHEMA 121
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
S++ + ++ L+ +NAK +N ++++DA ++K+ K E+
Sbjct: 72 SIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 115
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 10 GGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAK 69
G +SE F KLP+K PDYY IIK P L TI + +++G Y +++ + +++L+ +NAK
Sbjct: 26 GRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAK 85
Query: 70 KFNPADSRLYRDAVKLQKLMQRKVQE 95
+N S++++DA ++K+ K E
Sbjct: 86 TYNEPGSQVFKDANSIKKIFYMKKAE 111
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 40/65 (61%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L TI + +++G Y +++ + +++L+ +NAK +N S++++DA ++K+ K E
Sbjct: 52 PIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAE 111
Query: 157 FSLNE 161
+E
Sbjct: 112 IEHHE 116
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
S++ + ++ L+ +NAK +N ++++DA ++K+ K E+
Sbjct: 69 SIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 112
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+G L E F++ P +R PDYY ++ P L+ I + LK Y +N LT + L+F NA
Sbjct: 24 QGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQE 95
K + DS Y+ A KL L R E
Sbjct: 84 KSYYKPDSPEYKAACKLWDLYLRTRNE 110
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+V P L+ I + LK Y +N LT + L+F NAK + DS Y+ A KL L
Sbjct: 46 EVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYL 105
Query: 152 RKVQEF 157
R EF
Sbjct: 106 RTRNEF 111
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 144 VKLQKLMQR-KVQEFS-LNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
+ L K+ Q+ K++E+ +N LT + L+F NAK + D Y+ A KL L R E
Sbjct: 52 IDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEF 111
Query: 202 M 202
+
Sbjct: 112 V 112
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLM 64
K+ + G LSE F++LP+++ P+YY +I+ P I + +++ Y +LN+L ++ L+
Sbjct: 23 KDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 82
Query: 65 FENAKKFNPADSRLYRDAVKLQKL---MQRKVQENPRSL 100
+NA+ FN S +Y D++ LQ + +++K+++ SL
Sbjct: 83 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSL 121
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150
P I + +++ Y +LN+L ++ L+ +NA+ FN S +Y D++ LQ +
Sbjct: 54 PVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 107
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 134 PADSRLYRDAVKLQKLMQR-KVQEF-SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQ 191
P L R V +K+ +R + ++ SLN+L ++ L+ +NA+ FN +Y D++ LQ
Sbjct: 45 PEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQ 104
Query: 192 KLM 194
+
Sbjct: 105 SVF 107
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLM 64
K+ + G LSE F++LP+++ P+YY +I+ P I + +++ Y +LN+L ++ L+
Sbjct: 28 KDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 87
Query: 65 FENAKKFNPADSRLYRDAVKLQKLM 89
+NA+ FN S +Y D++ LQ +
Sbjct: 88 CQNAQTFNLEGSLIYEDSIVLQSVF 112
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150
P I + +++ Y +LN+L ++ L+ +NA+ FN S +Y D++ LQ +
Sbjct: 59 PVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 112
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 134 PADSRLYRDAVKLQKLMQR-KVQEF-SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQ 191
P L R V +K+ +R + ++ SLN+L ++ L+ +NA+ FN +Y D++ LQ
Sbjct: 50 PEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQ 109
Query: 192 KLM 194
+
Sbjct: 110 SVF 112
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLM 64
K+ + G LSE F++LP+++ P+YY +I+ P I + +++ Y +LN+L ++ L+
Sbjct: 27 KDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86
Query: 65 FENAKKFNPADSRLYRDAVKLQKLM 89
+NA+ FN S +Y D++ LQ +
Sbjct: 87 CQNAQTFNLEGSLIYEDSIVLQSVF 111
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150
P I + +++ Y +LN+L ++ L+ +NA+ FN S +Y D++ LQ +
Sbjct: 58 PVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 111
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 134 PADSRLYRDAVKLQKLMQR-KVQEF-SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQ 191
P L R V +K+ +R + ++ SLN+L ++ L+ +NA+ FN +Y D++ LQ
Sbjct: 49 PEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQ 108
Query: 192 KLM 194
+
Sbjct: 109 SVF 111
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%)
Query: 8 TEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFEN 67
+ G LSE F++LP+++ P+YY +I+ P I + +++ Y +L +L ++ L+ N
Sbjct: 31 SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN 90
Query: 68 AKKFNPADSRLYRDAVKLQKLMQRKVQENPRS 99
A+ FN S++Y D++ LQ + + Q P S
Sbjct: 91 AQTFNLEGSQIYEDSIVLQSVFKSARQSGPSS 122
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P I + +++ Y +L +L ++ L+ NA+ FN S++Y D++ LQ + + Q
Sbjct: 59 PVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQ 117
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 134 PADSRLYRDAVKLQKLMQR-KVQEF-SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQ 191
P L R V +K+ +R + ++ SL +L ++ L+ NA+ FN ++Y D++ LQ
Sbjct: 50 PEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQ 109
Query: 192 KLMQRKVQ 199
+ + Q
Sbjct: 110 SVFKSARQ 117
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLM 64
KN + LSEPF++L K P+YY I+ +P +L + + L+ G YS + + ++ L+
Sbjct: 207 KNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLV 266
Query: 65 FENAKKFNPADSRLYRDAVKLQKLMQRKVQ 94
F+NA FN + +Y+DA L +Q
Sbjct: 267 FQNAHIFNDPSALIYKDATTLTNYFNYLIQ 296
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
++ +P +L + + L+ G YS + + ++ L+F+NA FN + +Y+DA L
Sbjct: 233 EIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 292
Query: 152 RKVQ-EF-----SLNELTGELSLMFE 171
+Q EF LNE GE++L F+
Sbjct: 293 YLIQKEFFPELQDLNE-RGEINLEFD 317
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 42/218 (19%)
Query: 17 FLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADS 76
F+KLP+++++P YY I+ P S+ I K+ + + ++ L+ +N + +N DS
Sbjct: 86 FIKLPSRKFHPQYYYKIQQPMSINEI-KSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDS 144
Query: 77 RLYRDAVKLQKLMQRKV--QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 134
+ ++++++ L++ +V +N + I +K+ LN+L KK N
Sbjct: 145 LIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVD------ATEKKINQ 198
Query: 135 A-----DSRLYRDAVKLQKLMQRKVQEFSLNEL------------------TGELS---- 167
A + D VKL + V + L E G+ S
Sbjct: 199 ALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYD 258
Query: 168 ------LMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
L+F+NA FN +Y+DA L +Q
Sbjct: 259 FIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQ 296
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 10 GGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAK 69
G L + F+ P+K+ PDYY+II P L I +++ Y+ + ++ LMF NA+
Sbjct: 45 GRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104
Query: 70 KFNPADSRLYRDAVKLQKLMQRKVQE 95
+N S++Y DA L+KL++ K +E
Sbjct: 105 HYNEEGSQVYNDAHILEKLLKEKRKE 130
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L I +++ Y+ + ++ LMF NA+ +N S++Y DA L+KL++ K +E
Sbjct: 71 PMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKE 130
Query: 157 FS 158
Sbjct: 131 LG 132
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 165 ELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
++ LMF NA+ +N ++Y DA L+KL++ K +E+
Sbjct: 95 DMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKEL 131
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLM 64
KN + LSEPF++L K P+YY I+ +P +L + + L+ G YS + + ++ L+
Sbjct: 222 KNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLV 281
Query: 65 FENAKKFNPADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNL 124
F+NA FN + +Y+DA L +Q+ L LNE GE+NL
Sbjct: 282 FQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPEL-----------QDLNE-RGEINL 329
Query: 125 MFE 127
F+
Sbjct: 330 EFD 332
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
++ +P +L + + L+ G YS + + ++ L+F+NA FN + +Y+DA L
Sbjct: 248 EIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307
Query: 152 RKVQ-EF-----SLNELTGELSLMFE 171
+Q EF LNE GE++L F+
Sbjct: 308 YLIQKEFFPELQDLNE-RGEINLEFD 332
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 42/219 (19%)
Query: 17 FLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADS 76
F+KLP+++++P YY I+ P S+ I K+ + + ++ L+ +N + +N DS
Sbjct: 101 FIKLPSRKFHPQYYYKIQQPMSINEI-KSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDS 159
Query: 77 RLYRDAVKLQKLMQRKV--QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 134
+ ++++++ L++ +V +N + I +K+ LN+L KK N
Sbjct: 160 LIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVD------ATEKKINQ 213
Query: 135 A-----DSRLYRDAVKLQKLMQRKVQEFSLNEL------------------TGELS---- 167
A + D VKL + V + L E G+ S
Sbjct: 214 ALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYD 273
Query: 168 ------LMFENAKKFNPADLRLYRDAVKLQKLMQRKVQE 200
L+F+NA FN +Y+DA L +Q+
Sbjct: 274 FIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 312
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 5 KNQTE--GGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELN 62
KN T+ G LS FL+LP++ PDYY IK P + I + + Y ++ + +
Sbjct: 28 KNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFV 87
Query: 63 LMFENAKKFNPADSRLYRDAVKLQKLM 89
+MF NA +N +S +Y+DA+ L K++
Sbjct: 88 MMFNNACTYNEPESLIYKDALVLHKVL 114
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150
P + I + + Y ++ + + +MF NA +N +S +Y+DA+ L K++
Sbjct: 61 PMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVL 114
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 149 LMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLM 194
+M K Q+ ++ + + +MF NA +N + +Y+DA+ L K++
Sbjct: 71 MMANKYQD--IDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVL 114
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 5 KNQTE--GGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELN 62
KN T+ G LS FL+LP++ PDYY IK P + I + + Y ++ + +
Sbjct: 28 KNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFV 87
Query: 63 LMFENAKKFNPADSRLYRDAVKLQKLM 89
+MF NA +N +S +Y+DA+ L K++
Sbjct: 88 MMFNNACTYNEPESLIYKDALVLHKVL 114
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 43 GKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQENPRSLLT 102
G + K Y T + +LN ++E K + D R R + +L R E P LT
Sbjct: 4 GISPKKSKYMT--PMQQKLNEVYEAVKNY--TDKRGRRLSAIFLRLPSR--SELPDYYLT 57
Query: 103 IGKTLK---------SGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150
I K + + Y ++ + + +MF NA +N +S +Y+DA+ L K++
Sbjct: 58 IKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVL 114
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 149 LMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLM 194
+M K Q+ ++ + + +MF NA +N + +Y+DA+ L K++
Sbjct: 71 MMANKYQD--IDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVL 114
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLM 64
KN + LSEPF +L K P+YY I+ +P +L + + L+ G YS + + + L+
Sbjct: 166 KNLDDKVKLSEPFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLV 225
Query: 65 FENAKKFNPADSRLYRDAVKLQKLMQRKVQ 94
F+NA FN + +Y+DA L +Q
Sbjct: 226 FQNAHIFNDPSALIYKDATTLTNYFNYLIQ 255
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
++ +P +L + + L+ G YS + + + L+F+NA FN + +Y+DA L
Sbjct: 192 EIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTLTNYFN 251
Query: 152 RKVQ-EF-----SLNELTGELSLMFE 171
+Q EF LNE GE++L F+
Sbjct: 252 YLIQKEFFPELQDLNE-RGEINLEFD 276
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 42/218 (19%)
Query: 17 FLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADS 76
F+KLP+++++P YY I+ P S+ I K+ + + ++ L+ +N + +N DS
Sbjct: 45 FIKLPSRKFHPQYYYKIQQPXSINEI-KSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDS 103
Query: 77 RLYRDAVKLQKLMQRKV--QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 134
+ +++ ++ L++ +V +N + I +K+ LN+L KK N
Sbjct: 104 LIVKNSXQVVXLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVD------ATEKKINQ 157
Query: 135 A-----DSRLYRDAVKLQKLMQRKVQEFSLNEL------------------TGELS---- 167
A + D VKL + V + L E G+ S
Sbjct: 158 ALLGASSPKNLDDKVKLSEPFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYD 217
Query: 168 ------LMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
L+F+NA FN +Y+DA L +Q
Sbjct: 218 FIIDXLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQ 255
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 13 LSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFN 72
L+ P L LP K+ N DYY I +P L+TI K + +G+Y T+ ++ +F NA+K+
Sbjct: 32 LAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYY 91
Query: 73 PADSRLYRDAVKLQK 87
S + RD +L+K
Sbjct: 92 GRKSPVGRDVCRLRK 106
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
+P L+TI K + +G+Y T+ ++ +F NA+K+ S + RD +L+K
Sbjct: 54 DPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARH 113
Query: 156 EFS--LNELTGE 165
E S ++E+ GE
Sbjct: 114 EASAQIDEIVGE 125
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLM 64
KN + LSEPF +L K P+YY I+ +P +L + + L+ G YS + + + L+
Sbjct: 172 KNLDDKVKLSEPFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLV 231
Query: 65 FENAKKFNPADSRLYRDAVKLQKLMQRKVQ 94
F+NA FN + +Y+DA L +Q
Sbjct: 232 FQNAHIFNDPSALIYKDATTLTNYFNYLIQ 261
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
++ +P +L + + L+ G YS + + + L+F+NA FN + +Y+DA L
Sbjct: 198 EIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTLTNYFN 257
Query: 152 RKVQ-EF-----SLNELTGELSLMFE 171
+Q EF LNE GE++L F+
Sbjct: 258 YLIQKEFFPELQDLNE-RGEINLEFD 282
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 42/218 (19%)
Query: 17 FLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADS 76
F+KLP+++++P YY I+ P S+ I K+ + + ++ L+ +N + +N DS
Sbjct: 51 FIKLPSRKFHPQYYYKIQQPXSINEI-KSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDS 109
Query: 77 RLYRDAVKLQKLMQRKV--QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 134
+ +++ ++ L++ +V +N + I +K+ LN+L KK N
Sbjct: 110 LIVKNSXQVVXLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVD------ATEKKINQ 163
Query: 135 A-----DSRLYRDAVKLQKLMQRKVQEFSLNEL------------------TGELS---- 167
A + D VKL + V + L E G+ S
Sbjct: 164 ALLGASSPKNLDDKVKLSEPFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYD 223
Query: 168 ------LMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
L+F+NA FN +Y+DA L +Q
Sbjct: 224 FIIDXLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQ 261
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+ ++ PFL+ PDYY +IK P L T+ + ++ +Y L E ++ +F+N
Sbjct: 85 QAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNC 144
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQ 94
+ +NP+DS Y+ A L+ +K++
Sbjct: 145 RYYNPSDSPFYQCAEVLESFFVQKLK 170
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
V + P L T+ + ++ +Y L E ++ +F+N + +NP+DS Y+ A L+ +
Sbjct: 108 VIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 167
Query: 153 KVQEF 157
K++ F
Sbjct: 168 KLKGF 172
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 142 DAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
D +++ +QR+ E L E +++ +F+N + +NP+D Y+ A L+ +K++
Sbjct: 114 DLATMEERVQRRYYE-KLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 170
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+ ++ PFL+ PDYY +IK P L T+ + ++ +Y L E ++ +F+N
Sbjct: 33 QAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNC 92
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQ 94
+ +NP+DS Y+ A L+ +K++
Sbjct: 93 RYYNPSDSPFYQCAEVLESFFVQKLK 118
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
V + P L T+ + ++ +Y L E ++ +F+N + +NP+DS Y+ A L+ +
Sbjct: 56 VIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 115
Query: 153 KVQEF 157
K++ F
Sbjct: 116 KLKGF 120
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 142 DAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
D +++ +QR+ E L E +++ +F+N + +NP+D Y+ A L+ +K++
Sbjct: 62 DLATMEERVQRRYYE-KLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 118
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+ ++ PFL+ PDYY +IK P L T+ + ++ +Y L E ++ +F+N
Sbjct: 26 QAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTAIFDNC 85
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQ 94
+ +NP+DS Y+ A L+ +K++
Sbjct: 86 RYYNPSDSPFYQCAEVLESFFVQKLK 111
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
V + P L T+ + ++ +Y L E ++ +F+N + +NP+DS Y+ A L+ +
Sbjct: 49 VIKEPMDLATMEERVQRRYYEKLTEFVADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQ 108
Query: 153 KVQEF 157
K++ F
Sbjct: 109 KLKGF 113
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 142 DAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
D +++ +QR+ E L E +++ +F+N + +NP+D Y+ A L+ +K++
Sbjct: 55 DLATMEERVQRRYYE-KLTEFVADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 111
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+ ++ PFL+ PDYY +IK P L T+ + ++ +Y L E ++ +F+N
Sbjct: 85 QAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNC 144
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQ 94
+ +NP+DS Y+ A L+ +K++
Sbjct: 145 RYYNPSDSPFYQCAEVLESFFVQKLK 170
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
V + P L T+ + ++ +Y L E ++ +F+N + +NP+DS Y+ A L+ +
Sbjct: 108 VIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 167
Query: 153 KVQEF 157
K++ F
Sbjct: 168 KLKGF 172
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 142 DAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
D +++ +QR+ E L E +++ +F+N + +NP+D Y+ A L+ +K++
Sbjct: 114 DLATMEERVQRRYYE-KLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 170
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+ ++ PFL+ PDYY +IK P L T+ + ++ +Y L E ++ +F+N
Sbjct: 26 QAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNC 85
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQ 94
+ +NP+DS Y+ A L+ +K++
Sbjct: 86 RYYNPSDSPFYQCAEVLESFFVQKLK 111
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
V + P L T+ + ++ +Y L E ++ +F+N + +NP+DS Y+ A L+ +
Sbjct: 49 VIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 108
Query: 153 KVQEF 157
K++ F
Sbjct: 109 KLKGF 113
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 142 DAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
D +++ +QR+ E L E +++ +F+N + +NP+D Y+ A L+ +K++
Sbjct: 55 DLATMEERVQRRYYE-KLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 111
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PFL+ + Y P+YY+IIK P + ++ K L G Y T E ++ MF N +K+N
Sbjct: 34 SWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93
Query: 74 ADSRLYRDAVKLQKLMQR 91
S + + L++ R
Sbjct: 94 ESSEYTKMSDNLERCFHR 111
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
P + ++ K L G Y T E ++ MF N +K+N S + + L++ R
Sbjct: 56 PMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHR 111
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFE 66
Q + + PF++ K PDYY +I+ P L T+ + L+S +Y T +L +
Sbjct: 14 QIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 73
Query: 67 NAKKFNPADSRLYRDAVKLQKLMQRKVQE 95
N +++NP DS R A L+K K++E
Sbjct: 74 NCREYNPPDSEYCRCASALEKFFYFKLKE 102
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L T+ + L+S +Y T +L + N +++NP DS R A L+K K++E
Sbjct: 43 PIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 102
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 16 PFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD 75
PFL+ PDYY +IK P L T + ++ +Y L E + +F+N + +NP+D
Sbjct: 92 PFLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADXTKIFDNCRYYNPSD 151
Query: 76 SRLYRDAVKLQKLMQRKVQ 94
S Y+ A L+ +K++
Sbjct: 152 SPFYQCAEVLESFFVQKLK 170
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
V + P L T + ++ +Y L E + +F+N + +NP+DS Y+ A L+ +
Sbjct: 108 VIKEPXDLATXEERVQRRYYEKLTEFVADXTKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 167
Query: 153 KVQEF 157
K++ F
Sbjct: 168 KLKGF 172
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 142 DAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
D ++ +QR+ E L E + + +F+N + +NP+D Y+ A L+ +K++
Sbjct: 114 DLATXEERVQRRYYE-KLTEFVADXTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 170
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFE 66
Q + + PF++ K PDYY +I+ P L T+ + L+S +Y T +L +
Sbjct: 18 QIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 77
Query: 67 NAKKFNPADSRLYRDAVKLQKLMQRKVQE 95
N +++NP DS R A L+K K++E
Sbjct: 78 NCREYNPPDSEYCRCASALEKFFYFKLKE 106
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L T+ + L+S +Y T +L + N +++NP DS R A L+K K++E
Sbjct: 47 PIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 106
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY+ I+KNP L TI + L +G Y + ++ LMF NA +N SR+Y+ KL
Sbjct: 45 PDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLA 104
Query: 87 KLMQRKVQENPRSL 100
++ ++++ +SL
Sbjct: 105 EVFEQEIDPVMQSL 118
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
+ +NP L TI + L +G Y + ++ LMF NA +N SR+Y+ KL ++ ++
Sbjct: 50 IVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQ 109
Query: 153 KV 154
++
Sbjct: 110 EI 111
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY+ I+KNP L TI + L +G Y + ++ LMF NA +N SR+Y+ KL
Sbjct: 47 PDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLA 106
Query: 87 KLMQRKVQENPRSL 100
++ ++++ +SL
Sbjct: 107 EVFEQEIDPVMQSL 120
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
+ +NP L TI + L +G Y + ++ LMF NA +N SR+Y+ KL ++ ++
Sbjct: 52 IVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQ 111
Query: 153 KV 154
++
Sbjct: 112 EI 113
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGH--YSTLNELTGELNLMFENAKKFNPADSRLYRDAVK 84
PDYY+IIKNP L TI K L+ + YS + + L+F+N +FN DS + +K
Sbjct: 111 PDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIK 170
Query: 85 LQKLMQR 91
L+ +
Sbjct: 171 LENYFEE 177
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 76 SRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGH--YSTLNELTGELNLMFENAKKFN 133
S ++D V L K+ +NP L TI K L+ + YS + + L+F+N +FN
Sbjct: 99 SLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFN 158
Query: 134 PADSRLYRDAVKLQKLMQR 152
DS + +KL+ +
Sbjct: 159 EPDSEVANAGIKLENYFEE 177
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 42/194 (21%)
Query: 26 NPDYYRIIKNPRSLLTIGKTLK----SGHYSTLNEL-TGELNLMFENAKKFNPADSRLYR 80
N D+ + +N LL K K S H TL +GE F + + +
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTF--CRDLSKPEVEYDC 60
Query: 81 DA-------------VKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFE 127
DA VKL + +RK + R LL + E++L F+
Sbjct: 61 DAPSHNSEKKKTEGLVKLTPIDKRKCE---RLLLFL--------------YCHEMSLAFQ 103
Query: 128 NAKKFNPADS-RLYRDAVKLQKLMQRKVQEFSL----NELTGELSLMFENAKKFNPADLR 182
+ D ++ ++ + L + +R +++S+ + + L+F+N +FN D
Sbjct: 104 DPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSE 163
Query: 183 LYRDAVKLQKLMQR 196
+ +KL+ +
Sbjct: 164 VANAGIKLENYFEE 177
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 16 PFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD 75
PFL+ K PDYY IK P L T+ L+S Y + + + L+F N + +N +
Sbjct: 33 PFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92
Query: 76 SRLYRDAVKLQKLMQRKVQENP 97
+ Y+ A +L+K KV+E P
Sbjct: 93 TSYYKYANRLEKFFNNKVKEIP 114
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L T+ L+S Y + + + L+F N + +N ++ Y+ A +L+K KV+E
Sbjct: 53 PMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKE 112
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 144 VKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
+KL+ +K+++F + L+F N + +N + Y+ A +L+K KV+E+
Sbjct: 61 IKLESNKYQKMEDF-----IYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 113
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDYY IIKNP L TI K L++ +Y+ +E + N MF N +N + A L+
Sbjct: 46 PDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALE 105
Query: 87 KLMQRKVQENPR 98
KL +K+ + P+
Sbjct: 106 KLFMQKLSQMPQ 117
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKLQ + +NP L TI K L++ +Y+ +E + N MF N +N +
Sbjct: 39 DAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIV 98
Query: 141 RDAVKLQKLMQRKVQEFSLNE 161
A L+KL +K+ + E
Sbjct: 99 LMAQALEKLFMQKLSQMPQEE 119
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 9 EGGNLSEPFLKLPAKRYN-PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFEN 67
EGG++ E + AK+ N PDYY +IKNP S I LK G Y+ +E ++ L+F+N
Sbjct: 37 EGGHIFEKLV--DAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIFDN 94
Query: 68 AKKFNPADS 76
+N ++S
Sbjct: 95 CSLYNTSNS 103
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 67 NAKKFNPADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMF 126
+AKK N D Y D +K NP S I LK G Y+ +E ++ L+F
Sbjct: 47 DAKKQNCPD---YYDVIK-----------NPXSFSCIKTKLKKGQYAYPSEFVKDVQLIF 92
Query: 127 ENAKKFNPADS 137
+N +N ++S
Sbjct: 93 DNCSLYNTSNS 103
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGH--YSTLNELTGELNLMFENAKKFNPADSRLYRDAVK 84
PDYY+IIKNP L TI K L+ + YS + + L+F+N +FN DS + +K
Sbjct: 50 PDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIK 109
Query: 85 LQKLMQ 90
L+ +
Sbjct: 110 LENYFE 115
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 76 SRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGH--YSTLNELTGELNLMFENAKKFN 133
S ++D V L K+ +NP L TI K L+ + YS + + L+F+N +FN
Sbjct: 38 SLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFN 97
Query: 134 PADSRLYRDAVKLQKLMQ 151
DS + +KL+ +
Sbjct: 98 EPDSEVANAGIKLENYFE 115
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 7 QTEGGNLSEPFLKLPAKRYN-PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMF 65
Q + + PF++ P KR P YY +I+ P L T+ + LK+ +Y + +L +F
Sbjct: 24 QVKSHQSAWPFME-PVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVF 82
Query: 66 ENAKKFNPADSRLYRDAVKLQKLMQRKVQE 95
N K++NP +S Y+ A L+K K++E
Sbjct: 83 TNCKEYNPPESEYYKCANILEKFFFSKIKE 112
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L T+ + LK+ +Y + +L +F N K++NP +S Y+ A L+K K++E
Sbjct: 53 PMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKE 112
Query: 157 FSL 159
L
Sbjct: 113 AGL 115
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 162 LTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILD 205
+L +F N K++NP + Y+ A L+K K++E ++D
Sbjct: 74 FMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGLID 117
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 7 QTEGGNLSEPFLKLPAKRYN-PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMF 65
Q + + PF++ P KR P YY +I+ P L T+ + LK+ +Y + +L +F
Sbjct: 26 QVKSHQSAWPFME-PVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVF 84
Query: 66 ENAKKFNPADSRLYRDAVKLQKLMQRKVQE 95
N K++NP +S Y+ A L+K K++E
Sbjct: 85 TNCKEYNPPESEYYKCANILEKFFFSKIKE 114
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156
P L T+ + LK+ +Y + +L +F N K++NP +S Y+ A L+K K++E
Sbjct: 55 PMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKE 114
Query: 157 FSL 159
L
Sbjct: 115 AGL 117
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 162 LTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILD 205
+L +F N K++NP + Y+ A L+K K++E ++D
Sbjct: 76 FMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGLID 119
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY+ I+K+P L TI + L +G Y + ++ LMF NA +N SR+Y+ KL
Sbjct: 50 PDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLS 109
Query: 87 KLMQRKVQENPRSL 100
++ ++++ +SL
Sbjct: 110 EVFEQEIDPVMQSL 123
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
+ ++P L TI + L +G Y + ++ LMF NA +N SR+Y+ KL ++ ++
Sbjct: 55 IVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQ 114
Query: 153 KV 154
++
Sbjct: 115 EI 116
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 161 ELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
+ ++ LMF NA +N R+Y+ KL ++ ++++ VM
Sbjct: 79 QYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVM 120
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY++IIKNP + TI K L++ +Y + +E + N MF N +N + A L+
Sbjct: 52 PDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALE 111
Query: 87 KLMQRKVQENPR 98
K+ +KV + P+
Sbjct: 112 KIFLQKVAQMPQ 123
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DA+KL K+ +NP + TI K L++ +Y + +E + N MF N +N +
Sbjct: 45 DAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIV 104
Query: 141 RDAVKLQKLMQRKVQEFSLNEL 162
A L+K+ +KV + E+
Sbjct: 105 LMAQALEKIFLQKVAQMPQEEV 126
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY++IIKNP + TI K L++ +Y + +E + N MF N +N + A L+
Sbjct: 50 PDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALE 109
Query: 87 KLMQRKVQENPR 98
K+ +KV + P+
Sbjct: 110 KIFLQKVAQMPQ 121
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DA+KL K+ +NP + TI K L++ +Y + +E + N MF N +N +
Sbjct: 43 DAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIV 102
Query: 141 RDAVKLQKLMQRKVQEFSLNE 161
A L+K+ +KV + E
Sbjct: 103 LMAQALEKIFLQKVAQMPQEE 123
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY IIK+P + TI L+S Y E ++ LMF N K+NP D + A KLQ
Sbjct: 46 DYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQD 105
Query: 88 LMQRKVQENP 97
+ + + + P
Sbjct: 106 VFEMRFAKMP 115
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+ ++P + TI L+S Y E ++ LMF N K+NP D + A KLQ + +
Sbjct: 50 IIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 108
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 16/60 (26%)
Query: 136 DSRLYRDAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQ 195
+SR YRDA QEF ++ LMF N K+NP D + A KLQ + +
Sbjct: 65 ESREYRDA-----------QEFG-----ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 108
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY++IIKNP + TI K L++ +Y + +E + N MF N +N + A L+
Sbjct: 54 PDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALE 113
Query: 87 KLMQRKVQENPR 98
K+ +KV + P+
Sbjct: 114 KIFLQKVAQMPQ 125
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DA+KL K+ +NP + TI K L++ +Y + +E + N MF N +N +
Sbjct: 47 DAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIV 106
Query: 141 RDAVKLQKLMQRKVQEFSLNEL 162
A L+K+ +KV + E+
Sbjct: 107 LMAQALEKIFLQKVAQMPQEEV 128
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY IK+P T+ K L++ Y L+E + +L+ +N K+N D+ YR AV+L+
Sbjct: 44 PDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLR 103
Query: 87 KLMQRKVQENPRSLLTIGKTLKSGHY 112
+++ R + +IG SG +
Sbjct: 104 DQGGVVLRQARREVDSIGLEEASGMH 129
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ-------K 148
+P T+ K L++ Y L+E + +L+ +N K+N D+ YR AV+L+ +
Sbjct: 52 HPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLR 111
Query: 149 LMQRKVQEFSLNELTG 164
+R+V L E +G
Sbjct: 112 QARREVDSIGLEEASG 127
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQ 191
+L+E + L+ +N K+N D YR AV+L+
Sbjct: 70 NLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLR 103
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
SEPF + PDY II P T+ +TL++G+Y + EL ++ L+F N+K + P
Sbjct: 39 SEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTP 98
Query: 74 AD-SRLYRDAVKLQKLMQRKV 93
+ SR+Y +++L + +
Sbjct: 99 SKRSRIYSMSLRLSAFFEEHI 119
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 61 LNLMFENAKKFNPADSRLYRDAVKLQKLMQ-RKVQENPRSLLTIGKTLKSGHYSTLNELT 119
LNL+F+ DS +R V L + R + + P T+ +TL++G+Y + EL
Sbjct: 30 LNLIFQCE------DSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELC 83
Query: 120 GELNLMFENAKKFNPAD-SRLYRDAVKLQKLMQRKV 154
++ L+F N+K + P+ SR+Y +++L + +
Sbjct: 84 KDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHI 119
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDYY IIK P L TI K L++ +Y +E + N MF N +N + A L+
Sbjct: 47 PDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALE 106
Query: 87 KLMQRKVQENPR 98
KL +K+ + P+
Sbjct: 107 KLFMQKLSQMPQ 118
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL+ + + P L TI K L++ +Y +E + N MF N +N +
Sbjct: 40 DAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIV 99
Query: 141 RDAVKLQKLMQRKVQEFSLNE 161
A L+KL +K+ + E
Sbjct: 100 VMAQALEKLFMQKLSQMPQEE 120
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDYY+IIK P + TI K L++ +Y E + N MF N +N + A L+
Sbjct: 74 PDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALE 133
Query: 87 KLMQRKVQENP 97
KL +K+ E P
Sbjct: 134 KLFLQKINELP 144
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL K+ + P + TI K L++ +Y E + N MF N +N +
Sbjct: 67 DAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV 126
Query: 141 RDAVKLQKLMQRKVQE 156
A L+KL +K+ E
Sbjct: 127 LMAEALEKLFLQKINE 142
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY+ IIK+P L T+ + +++ Y E ++ LMF N K+NP D + A KLQ
Sbjct: 38 DYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQD 97
Query: 88 LMQRKVQENP 97
+ + + + P
Sbjct: 98 VFEFRYAKMP 107
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+ ++P L T+ + +++ Y E ++ LMF N K+NP D + A KLQ + +
Sbjct: 42 IIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFE 100
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 145 KLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
K++ R QEF+ ++ LMF N K+NP D D V M RK+Q+V
Sbjct: 55 KMENRDYRDAQEFA-----ADVRLMFSNCYKYNPPD----HDVVA----MARKLQDVF 99
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY IIK+P + TI L++ Y E ++ LMF N K+NP D + A KLQ
Sbjct: 57 DYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQD 116
Query: 88 LMQRKVQENP 97
+ + + + P
Sbjct: 117 VFEMRFAKMP 126
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+P + TI L++ Y E ++ LMF N K+NP D + A KLQ + +
Sbjct: 64 HPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 119
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 145 KLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQ 195
KL+ R QEF ++ LMF N K+NP D + A KLQ + +
Sbjct: 74 KLEAREYRDAQEFG-----ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 119
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDYY+IIK P + TI K L++ +Y E + N MF N +N + A L+
Sbjct: 54 PDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALE 113
Query: 87 KLMQRKVQENP 97
KL +K+ E P
Sbjct: 114 KLFLQKINELP 124
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL K+ + P + TI K L++ +Y E + N MF N +N +
Sbjct: 47 DAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV 106
Query: 141 RDAVKLQKLMQRKVQEFSLNE 161
A L+KL +K+ E E
Sbjct: 107 LMAEALEKLFLQKINELPTEE 127
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY IIK+P + TI L++ Y E ++ LMF N K+NP D + A KLQ
Sbjct: 59 DYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQD 118
Query: 88 LMQRKVQENP 97
+ + + + P
Sbjct: 119 VFEMRFAKMP 128
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+ ++P + TI L++ Y E ++ LMF N K+NP D + A KLQ + +
Sbjct: 63 IIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 121
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 145 KLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQ 195
KL+ R QEF ++ LMF N K+NP D + A KLQ + +
Sbjct: 76 KLEAREYRDAQEFG-----ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 121
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDYY+IIK P + TI K L++ +Y E + N MF N +N + A L+
Sbjct: 58 PDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALE 117
Query: 87 KLMQRKVQENP 97
KL +K+ E P
Sbjct: 118 KLFLQKINELP 128
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL K+ + P + TI K L++ +Y E + N MF N +N +
Sbjct: 51 DAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV 110
Query: 141 RDAVKLQKLMQRKVQEFSLNE 161
A L+KL +K+ E E
Sbjct: 111 LMAEALEKLFLQKINELPTEE 131
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDYY+IIK P + TI K L++ +Y E + N MF N +N + A L+
Sbjct: 54 PDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALE 113
Query: 87 KLMQRKVQENP 97
KL +K+ E P
Sbjct: 114 KLFLQKINELP 124
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL K+ + P + TI K L++ +Y E + N MF N +N +
Sbjct: 47 DAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV 106
Query: 141 RDAVKLQKLMQRKVQEFSLNE 161
A L+KL +K+ E E
Sbjct: 107 LMAEALEKLFLQKINELPTEE 127
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY+ IIK+P L T+ + +++ Y E ++ LMF N K+NP D + A KLQ
Sbjct: 42 DYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQD 101
Query: 88 LMQRKVQENP 97
+ + + + P
Sbjct: 102 VFEFRYAKMP 111
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+ ++P L T+ + +++ Y E ++ LMF N K+NP D + A KLQ + +
Sbjct: 46 IIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFE 104
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 145 KLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQ 195
K++ R QEF+ ++ LMF N K+NP D + A KLQ + +
Sbjct: 59 KMENRDYRDAQEFA-----ADVRLMFSNCYKYNPPDHDVVAMARKLQDVFE 104
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY+ IIK+P L T+ + +++ Y E ++ LMF N K+NP D + A KLQ
Sbjct: 44 DYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQD 103
Query: 88 LMQRKVQENP 97
+ + + + P
Sbjct: 104 VFEFRYAKMP 113
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+ ++P L T+ + +++ Y E ++ LMF N K+NP D + A KLQ + +
Sbjct: 48 IIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFE 106
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 145 KLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQ 195
K++ R QEF+ ++ LMF N K+NP D + A KLQ + +
Sbjct: 61 KMENRDYRDAQEFA-----ADVRLMFSNCYKYNPPDHDVVAMARKLQDVFE 106
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 45 SWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 104
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSG 110
+S+ + A ++ + + + E L + K + +
Sbjct: 105 PESQYTKTAQEIVNICYQTITEYDEHLTQLEKDICTA 141
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ + + +
Sbjct: 66 NPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNICYQTIT 125
Query: 156 EF 157
E+
Sbjct: 126 EY 127
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 48 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSG 110
+S+ + A ++ + + + E L + K + +
Sbjct: 108 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTA 144
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ +
Sbjct: 65 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 124
Query: 152 RKVQEF 157
+ + E+
Sbjct: 125 QTLTEY 130
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 188 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 247
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNE 117
+S+ + A ++ + + + E L + K + + + L E
Sbjct: 248 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEE 291
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DYY+II P L T+ + ++ Y + E L L+ +N+ +N L + + +
Sbjct: 79 DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLD 138
Query: 88 LMQRKVQENPRSLLTIGKTL 107
L K++E L + K +
Sbjct: 139 LCDEKLKEKEDKLARLEKAI 158
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ +
Sbjct: 205 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 264
Query: 152 RKVQEFS--LNELTGELSLMFENA 173
+ + E+ L +L ++ E A
Sbjct: 265 QTLTEYDEHLTQLEKDICTAKEAA 288
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY IIK+P TI L+S Y E ++ L F N K+NP D + A KLQ
Sbjct: 44 DYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQD 103
Query: 88 LMQRKVQENP 97
+ + + + P
Sbjct: 104 VFEXRFAKXP 113
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
+ ++P TI L+S Y E ++ L F N K+NP D + A KLQ + +
Sbjct: 48 IIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEX 107
Query: 153 K 153
+
Sbjct: 108 R 108
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 145 KLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRK 197
KL+ R QEF ++ L F N K+NP D + A KLQ + + +
Sbjct: 61 KLESREYRDAQEFG-----ADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXR 108
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
SEPF + PDY II P T+ +TL +G+Y + E ++ L+F NAK + P
Sbjct: 28 SEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTP 87
Query: 74 AD-SRLYRDAVKLQKLMQRKVQ 94
S++Y ++L L + K++
Sbjct: 88 NKRSKIYSMTLRLSALFEEKMK 109
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 71 FNPADSRLYRDAVKLQKLMQ-RKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 129
F DS +R V L + R + + P T+ +TL +G+Y + E ++ L+F NA
Sbjct: 23 FQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNA 82
Query: 130 KKFNPAD-SRLYRDAVKLQKLMQRKVQEFSLNELTGE 165
K + P S++Y ++L L + K+++ S + G+
Sbjct: 83 KAYTPNKRSKIYSMTLRLSALFEEKMKKISSDFKIGQ 119
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY IIK+P + TI L++ Y E ++ LMF N K+NP D + A KLQ
Sbjct: 38 DYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQD 97
Query: 88 LMQ 90
+ +
Sbjct: 98 VFE 100
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+ ++P + TI L++ Y E ++ LMF N K+NP D + A KLQ + +
Sbjct: 42 IIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 100
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 145 KLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
KL+ R QEF ++ LMF N K+NP D + A KLQ + + + +++
Sbjct: 55 KLEAREYRDAQEFG-----ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKML 107
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 155 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 214
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSG 110
+S+ + A ++ + + + E L + K + +
Sbjct: 215 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTA 251
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DYY+II P L T+ + ++ Y + E L L+ +N+ +N L + + +
Sbjct: 46 DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLD 105
Query: 88 LMQRKVQENPRSLLTIGKTL 107
L K++E L + K +
Sbjct: 106 LCDEKLKEKEDKLARLEKAI 125
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ +
Sbjct: 172 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 231
Query: 152 RKVQEF 157
+ + E+
Sbjct: 232 QTLTEY 237
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY++IIK P + TI + L++ +Y +E + N MF N +N + A L+
Sbjct: 65 PDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLE 124
Query: 87 KLMQRKVQENPRS----LLTIGKTLKSG 110
K+ +KV P+ ++TI + K G
Sbjct: 125 KIFLQKVASMPQEEQELVVTIPNSHKKG 152
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL K+ + P + TI + L++ +Y +E + N MF N +N +
Sbjct: 58 DAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIV 117
Query: 141 RDAVKLQKLMQRKVQEFSLNELTGELSLMFENAKK 175
A L+K+ +KV S+ + EL + N+ K
Sbjct: 118 LMAQTLEKIFLQKVA--SMPQEEQELVVTIPNSHK 150
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY+ IIK+P L T+ + + Y ++ LMF N K+NP D + A KLQ
Sbjct: 44 DYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQD 103
Query: 88 LMQRKVQENP 97
+ + + + P
Sbjct: 104 VFEMRFAKMP 113
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DA L+ + ++P L T+ + + Y ++ LMF N K+NP D +
Sbjct: 36 DAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVV 95
Query: 141 RDAVKLQKLMQ 151
A KLQ + +
Sbjct: 96 AMARKLQDVFE 106
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 16 PFLKLPAK-RYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPA 74
PFL LP + P Y ++IK P TI + L SG Y L ++ L+F+N + FN
Sbjct: 33 PFL-LPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNED 91
Query: 75 DSRLYRDAVKLQKLMQRK 92
DS + R ++K ++K
Sbjct: 92 DSDIGRAGHNMRKYFEKK 109
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 91 RKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150
+KV + P TI + L SG Y L ++ L+F+N + FN DS + R ++K
Sbjct: 47 KKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYF 106
Query: 151 QRK 153
++K
Sbjct: 107 EKK 109
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 16 PFLKLPAK-RYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPA 74
PFL LP + P Y ++IK P TI + L SG Y L ++ L+F+N + FN
Sbjct: 30 PFL-LPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNED 88
Query: 75 DSRLYRDAVKLQKLMQRK 92
DS + R ++K ++K
Sbjct: 89 DSDIGRAGHNMRKYFEKK 106
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 91 RKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150
+KV + P TI + L SG Y L ++ L+F+N + FN DS + R ++K
Sbjct: 44 KKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYF 103
Query: 151 QRK 153
++K
Sbjct: 104 EKK 106
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 167 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 226
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSG 110
+S+ + A ++ + + + E L + K + +
Sbjct: 227 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTA 263
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DYY+II P L T+ + ++ Y + E L L+ +N+ +N L + + +
Sbjct: 58 DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLD 117
Query: 88 LMQRKVQENPRSLLTIGKTL 107
L K++E L + K +
Sbjct: 118 LCDEKLKEKEDKLARLEKAI 137
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ +
Sbjct: 184 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 243
Query: 152 RKVQEF 157
+ + E+
Sbjct: 244 QTLTEY 249
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
DY+ IIK+P L T+ + + Y ++ LMF N K+NP D + A KLQ
Sbjct: 49 DYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQD 108
Query: 88 LMQ 90
+ +
Sbjct: 109 VFE 111
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DA L+ + ++P L T+ + + Y ++ LMF N K+NP D +
Sbjct: 41 DAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVV 100
Query: 141 RDAVKLQKLMQ 151
A KLQ + +
Sbjct: 101 AMARKLQDVFE 111
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY++IIK P + TI + L++ +Y +E + N MF N +N + A L+
Sbjct: 65 PDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLE 124
Query: 87 KLMQRKVQENPR 98
K+ +KV P+
Sbjct: 125 KIFLQKVASMPQ 136
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL K+ + P + TI + L++ +Y +E + N MF N +N +
Sbjct: 58 DAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIV 117
Query: 141 RDAVKLQKLMQRKVQEFSLNE 161
A L+K+ +KV E
Sbjct: 118 LMAQTLEKIFLQKVASMPQEE 138
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87
+YY ++KNP L TI + + Y E ++ LMF N K+NP D + A LQ
Sbjct: 51 NYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQD 110
Query: 88 LMQRKVQENP 97
+ + + P
Sbjct: 111 VFELHFAKIP 120
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 71 FNPADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAK 130
+NP D+ DA+ L V +NP L TI + + Y E ++ LMF N
Sbjct: 39 YNPVDA----DALGLHNYYD--VVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCY 92
Query: 131 KFNPADSRLYRDAVKLQKLMQ 151
K+NP D + A LQ + +
Sbjct: 93 KYNPPDHEVVAMARTLQDVFE 113
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY IK P T+ + L++ Y ++ + NL+ N K+N D+ YR AV+L+
Sbjct: 38 PDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLR 97
Query: 87 KLMQRKVQENPRSLLTIGKTLKSG 110
+ +++ R +G SG
Sbjct: 98 EQGGAVLRQARRQAEKMGSGPSSG 121
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 148
P T+ + L++ Y ++ + NL+ N K+N D+ YR AV+L++
Sbjct: 47 PMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLRE 98
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 27 PDYYRIIKNPRSLLTIGKTLK---SGHYSTLNELTGELNLMFENAKKFN 72
P+YY+IIK P L T+ K L+ S HY ++ ++ L+F+N ++FN
Sbjct: 111 PNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFN 159
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 92 KVQENPRSLLTIGKTLK---SGHYSTLNELTGELNLMFENAKKFN 133
K+ + P L T+ K L+ S HY ++ ++ L+F+N ++FN
Sbjct: 115 KIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFN 159
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY++IIK P TI + L++ +Y +E + N F N +N + A L+
Sbjct: 39 PDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKPTDDIVLXAQTLE 98
Query: 87 KLMQRKVQENPRS----LLTIGK 105
K+ +KV P+ ++TI K
Sbjct: 99 KIFLQKVASXPQEEQELVVTIPK 121
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL K+ + P TI + L++ +Y +E + N F N +N +
Sbjct: 32 DAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKPTDDIV 91
Query: 141 RDAVKLQKLMQRKV 154
A L+K+ +KV
Sbjct: 92 LXAQTLEKIFLQKV 105
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
PDY++IIK P TI + L++ +Y +E + N F N +N + A L+
Sbjct: 45 PDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKPTDDIVLXAQTLE 104
Query: 87 KLMQRKVQENPR 98
K+ +KV P+
Sbjct: 105 KIFLQKVASXPQ 116
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 81 DAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 140
DAVKL K+ + P TI + L++ +Y +E + N F N +N +
Sbjct: 38 DAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKPTDDIV 97
Query: 141 RDAVKLQKLMQRKV 154
A L+K+ +KV
Sbjct: 98 LXAQTLEKIFLQKV 111
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 17 FLKLPAKRY-NPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD 75
F P + P Y IIK+P T+ + +K+ Y ++ EL LM NA +N +
Sbjct: 28 FFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPE 87
Query: 76 SRLYRDAVKL 85
+ Y+ A KL
Sbjct: 88 TIYYKAAKKL 97
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKL 85
P Y IIK+P T+ + + Y ++ E + LM +NA +N D+ Y+ A K+
Sbjct: 44 PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKI 102
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
PDY +IK P L ++ + Y T+ + +++L+ NA ++NP
Sbjct: 41 PDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 25/120 (20%)
Query: 23 KRYN------PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADS 76
KR+N DY +IK P L T+ + +Y T + +++L+ NA ++NP
Sbjct: 28 KRFNIFSKPVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP--- 84
Query: 77 RLYRDAVKLQKLMQRKVQENPRSLLTIGKTLK-SGHYSTLNELTGELNLMFENAKKFNPA 135
D K+++ + TLK + H EL E N + E K+ P+
Sbjct: 85 ----DKDPGDKIIRHRAC-----------TLKDTAHAIIAAELDPEFNKLCEEIKESGPS 129
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 28 DYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
DY +IK P L T+ + +Y T + +++L+ NA ++NP
Sbjct: 44 DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 89
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 31.2 bits (69), Expect = 0.62, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 140 YRDAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
Y V++Q+ Q +Q+ L + EL + F + +F P + YRD V + Q
Sbjct: 627 YCATVRVQQHRQEIIQD--LAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHH 684
Query: 200 EVMILDIEC----------QVYLISDELTHYQVVLTGTAEQVRLSG-LPDG 239
E++ + C +++ + H ++ T E+V SG +P G
Sbjct: 685 ELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAG 735
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 31.2 bits (69), Expect = 0.63, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 140 YRDAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQ 199
Y V++Q+ Q +Q+ L + EL + F + +F P + YRD V + Q
Sbjct: 625 YCATVRVQQHRQEIIQD--LAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHH 682
Query: 200 EVMILDIEC----------QVYLISDELTHYQVVLTGTAEQVRLSG-LPDG 239
E++ + C +++ + H ++ T E+V SG +P G
Sbjct: 683 ELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAG 733
>pdb|3FCD|A Chain A, Crystal Structure Of A Putative Glyoxalase From An
Environmental Bacteria
pdb|3FCD|B Chain B, Crystal Structure Of A Putative Glyoxalase From An
Environmental Bacteria
Length = 134
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 230 QVRLSGLPDGDWLAFTLPVVSG 251
QVR PDGDWL FT P+ G
Sbjct: 110 QVRX---PDGDWLNFTAPLAEG 128
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/123 (17%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 99 SLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFS 158
S +++G+ +Y+ LN+ L+ + + + +S+L V Q+ + ++Q+ +
Sbjct: 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKL----VVGQREIHNRIQQLN 57
Query: 159 LNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDIECQVYLISDELT 218
N+ ++S + A N +++ + + M+R Q ++ + Y + +++
Sbjct: 58 FNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIF 117
Query: 219 HYQ 221
YQ
Sbjct: 118 RYQ 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,158,995
Number of Sequences: 62578
Number of extensions: 274502
Number of successful extensions: 1022
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 219
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)