Query psy1225
Match_columns 256
No_of_seqs 308 out of 1950
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:35:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1827|consensus 100.0 2.5E-33 5.5E-38 262.7 4.1 202 6-255 68-283 (629)
2 COG5076 Transcription factor i 100.0 5E-30 1.1E-34 234.4 6.6 201 4-255 156-369 (371)
3 cd05520 Bromo_polybromo_III Br 99.9 3.3E-26 7.2E-31 172.3 9.1 86 7-92 17-102 (103)
4 cd05516 Bromo_SNF2L2 Bromodoma 99.9 3.8E-26 8.3E-31 173.3 9.4 90 7-96 18-107 (107)
5 cd05497 Bromo_Brdt_I_like Brom 99.9 3.4E-26 7.5E-31 173.4 8.4 94 2-95 11-106 (107)
6 cd05525 Bromo_ASH1 Bromodomain 99.9 5.2E-26 1.1E-30 171.9 9.2 87 6-92 18-104 (106)
7 cd05505 Bromo_WSTF_like Bromod 99.9 5.1E-26 1.1E-30 169.4 8.2 91 2-92 6-96 (97)
8 cd05515 Bromo_polybromo_V Brom 99.9 8.3E-26 1.8E-30 170.9 9.4 88 7-94 17-104 (105)
9 cd05518 Bromo_polybromo_IV Bro 99.9 7.5E-26 1.6E-30 170.3 8.8 86 7-92 17-102 (103)
10 cd05517 Bromo_polybromo_II Bro 99.9 7.4E-26 1.6E-30 170.4 8.8 85 7-91 17-101 (103)
11 cd05508 Bromo_RACK7 Bromodomai 99.9 8.7E-26 1.9E-30 168.6 8.0 91 1-92 8-98 (99)
12 cd05496 Bromo_WDR9_II Bromodom 99.9 9.5E-26 2.1E-30 173.6 8.4 104 2-105 11-115 (119)
13 cd05524 Bromo_polybromo_I Brom 99.9 2.2E-25 4.7E-30 170.6 9.0 90 7-96 19-108 (113)
14 cd05511 Bromo_TFIID Bromodomai 99.9 3.3E-25 7.1E-30 169.4 8.7 106 1-106 5-110 (112)
15 cd05503 Bromo_BAZ2A_B_like Bro 99.9 3.1E-25 6.8E-30 165.5 8.2 92 2-93 6-97 (97)
16 cd05507 Bromo_brd8_like Bromod 99.9 4E-25 8.7E-30 166.9 8.5 94 2-95 9-102 (104)
17 cd05519 Bromo_SNF2 Bromodomain 99.9 5.7E-25 1.2E-29 165.9 9.1 86 7-92 17-102 (103)
18 cd05504 Bromo_Acf1_like Bromod 99.9 5E-25 1.1E-29 169.1 8.2 95 2-96 18-112 (115)
19 cd05510 Bromo_SPT7_like Bromod 99.9 6.2E-25 1.3E-29 167.6 8.2 96 2-97 13-110 (112)
20 cd05509 Bromo_gcn5_like Bromod 99.9 8.2E-25 1.8E-29 164.6 8.3 96 1-96 6-101 (101)
21 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.3E-24 2.7E-29 164.1 8.9 87 6-92 17-103 (104)
22 cd05495 Bromo_cbp_like Bromodo 99.9 9.7E-25 2.1E-29 165.8 8.3 94 2-95 9-105 (108)
23 cd05512 Bromo_brd1_like Bromod 99.9 9.3E-25 2E-29 163.0 7.3 89 1-89 6-94 (98)
24 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.3E-24 5E-29 162.9 8.9 86 7-94 18-103 (106)
25 cd05513 Bromo_brd7_like Bromod 99.9 3.4E-24 7.4E-29 159.7 7.5 88 2-89 7-94 (98)
26 cd05528 Bromo_AAA Bromodomain; 99.9 4.7E-24 1E-28 162.8 8.2 96 1-96 8-107 (112)
27 cd05499 Bromo_BDF1_2_II Bromod 99.9 8E-24 1.7E-28 159.4 8.4 84 10-93 17-102 (102)
28 cd05502 Bromo_tif1_like Bromod 99.9 2.2E-23 4.9E-28 158.8 8.7 93 3-96 11-106 (109)
29 cd05501 Bromo_SP100C_like Brom 99.9 2.8E-23 6.2E-28 155.0 8.7 90 3-95 9-98 (102)
30 cd05498 Bromo_Brdt_II_like Bro 99.9 4.4E-23 9.6E-28 155.4 8.5 90 4-93 8-102 (102)
31 cd05506 Bromo_plant1 Bromodoma 99.9 6.7E-23 1.5E-27 153.6 8.5 92 2-93 6-99 (99)
32 cd05500 Bromo_BDF1_2_I Bromodo 99.9 7.7E-23 1.7E-27 154.3 8.2 91 2-92 10-102 (103)
33 smart00297 BROMO bromo domain. 99.9 1E-22 2.2E-27 154.4 8.2 94 2-95 13-106 (107)
34 cd05529 Bromo_WDR9_I_like Brom 99.9 1.7E-22 3.6E-27 158.0 9.4 87 9-95 40-127 (128)
35 cd05526 Bromo_polybromo_VI Bro 99.9 7.3E-22 1.6E-26 149.0 8.4 87 7-95 20-106 (110)
36 PF00439 Bromodomain: Bromodom 99.8 4.8E-21 1E-25 138.9 7.7 82 3-84 3-84 (84)
37 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.7E-20 3.6E-25 142.0 9.2 85 12-96 17-106 (109)
38 KOG1474|consensus 99.8 7.8E-21 1.7E-25 183.9 9.2 152 6-157 2-324 (640)
39 cd04369 Bromodomain Bromodomai 99.8 8.4E-21 1.8E-25 140.8 7.1 90 3-92 7-98 (99)
40 KOG1474|consensus 99.8 1.4E-20 3E-25 182.2 8.3 94 3-96 229-324 (640)
41 KOG1472|consensus 99.7 1.4E-16 3.1E-21 152.5 7.2 68 11-78 301-368 (720)
42 cd05497 Bromo_Brdt_I_like Brom 99.6 1.8E-15 3.9E-20 114.7 9.7 63 95-157 45-107 (107)
43 cd05505 Bromo_WSTF_like Bromod 99.6 1.1E-15 2.4E-20 113.8 8.1 59 95-153 38-96 (97)
44 KOG0008|consensus 99.6 8E-16 1.7E-20 152.8 8.9 154 2-155 1267-1480(1563)
45 cd05501 Bromo_SP100C_like Brom 99.6 2.1E-15 4.5E-20 112.7 8.6 60 96-156 39-98 (102)
46 cd05496 Bromo_WDR9_II Bromodom 99.6 1.7E-15 3.6E-20 116.8 8.1 100 55-156 4-105 (119)
47 cd05495 Bromo_cbp_like Bromodo 99.6 3.4E-15 7.3E-20 113.4 8.9 63 94-156 43-105 (108)
48 cd05526 Bromo_polybromo_VI Bro 99.6 4E-15 8.7E-20 112.4 8.7 63 94-156 44-106 (110)
49 cd05516 Bromo_SNF2L2 Bromodoma 99.6 3.2E-15 6.9E-20 113.4 8.1 60 97-156 47-106 (107)
50 cd05504 Bromo_Acf1_like Bromod 99.6 5.6E-15 1.2E-19 113.4 9.1 63 95-157 50-112 (115)
51 cd05503 Bromo_BAZ2A_B_like Bro 99.6 4.3E-15 9.3E-20 110.8 8.1 58 97-154 40-97 (97)
52 cd05525 Bromo_ASH1 Bromodomain 99.6 6.5E-15 1.4E-19 111.4 8.8 57 97-153 48-104 (106)
53 cd05518 Bromo_polybromo_IV Bro 99.6 4.6E-15 9.9E-20 111.7 7.3 57 97-153 46-102 (103)
54 KOG1245|consensus 99.6 1.1E-15 2.4E-20 157.0 5.3 91 3-94 1308-1398(1404)
55 cd05524 Bromo_polybromo_I Brom 99.6 5.8E-15 1.3E-19 113.0 7.8 61 97-157 48-108 (113)
56 cd05520 Bromo_polybromo_III Br 99.6 5.8E-15 1.3E-19 111.1 7.6 57 97-153 46-102 (103)
57 cd05515 Bromo_polybromo_V Brom 99.6 6.9E-15 1.5E-19 111.2 7.9 59 97-155 46-104 (105)
58 cd05509 Bromo_gcn5_like Bromod 99.6 1E-14 2.2E-19 109.6 8.2 62 96-157 40-101 (101)
59 cd05506 Bromo_plant1 Bromodoma 99.6 1.2E-14 2.5E-19 108.9 8.2 59 96-154 41-99 (99)
60 cd05508 Bromo_RACK7 Bromodomai 99.6 9.7E-15 2.1E-19 109.0 7.6 59 95-153 40-98 (99)
61 cd05507 Bromo_brd8_like Bromod 99.6 1.3E-14 2.9E-19 109.5 8.1 62 95-156 41-102 (104)
62 cd05517 Bromo_polybromo_II Bro 99.5 1.5E-14 3.3E-19 108.9 7.3 56 97-152 46-101 (103)
63 cd05499 Bromo_BDF1_2_II Bromod 99.5 2.1E-14 4.5E-19 108.1 7.3 59 96-154 44-102 (102)
64 cd05513 Bromo_brd7_like Bromod 99.5 3.4E-14 7.4E-19 105.9 8.2 54 96-149 40-93 (98)
65 cd05498 Bromo_Brdt_II_like Bro 99.5 2.6E-14 5.6E-19 107.6 7.3 58 97-154 45-102 (102)
66 cd05510 Bromo_SPT7_like Bromod 99.5 9.8E-14 2.1E-18 105.9 10.3 64 94-157 45-109 (112)
67 cd05502 Bromo_tif1_like Bromod 99.5 6.2E-14 1.3E-18 106.7 8.7 62 95-156 41-105 (109)
68 cd05519 Bromo_SNF2 Bromodomain 99.5 3.6E-14 7.8E-19 107.0 7.3 57 97-153 46-102 (103)
69 cd05512 Bromo_brd1_like Bromod 99.5 6.7E-14 1.5E-18 104.4 8.3 56 95-150 39-94 (98)
70 cd05528 Bromo_AAA Bromodomain; 99.5 1.5E-13 3.2E-18 105.0 9.4 61 96-156 42-106 (112)
71 cd05511 Bromo_TFIID Bromodomai 99.5 9.3E-14 2E-18 106.2 7.9 63 95-157 38-100 (112)
72 smart00297 BROMO bromo domain. 99.5 2.2E-13 4.7E-18 103.0 9.7 61 96-156 46-106 (107)
73 cd05492 Bromo_ZMYND11 Bromodom 99.5 1E-13 2.3E-18 104.9 7.8 64 94-157 43-106 (109)
74 cd05521 Bromo_Rsc1_2_I Bromodo 99.5 1.2E-13 2.7E-18 104.3 7.6 57 97-155 47-103 (106)
75 cd05500 Bromo_BDF1_2_I Bromodo 99.5 1.4E-13 3E-18 103.8 7.3 57 97-153 46-102 (103)
76 cd05529 Bromo_WDR9_I_like Brom 99.5 1.9E-13 4.2E-18 106.8 8.0 62 95-156 66-127 (128)
77 cd05522 Bromo_Rsc1_2_II Bromod 99.5 1.9E-13 4.1E-18 103.1 7.7 57 97-153 47-103 (104)
78 KOG1472|consensus 99.4 1.5E-13 3.2E-18 132.0 4.1 94 3-96 613-706 (720)
79 PF00439 Bromodomain: Bromodom 99.4 1.8E-12 3.8E-17 93.7 7.1 51 95-145 34-84 (84)
80 cd04717 BAH_polybromo BAH, or 99.4 8E-15 1.7E-19 113.7 -6.1 81 174-254 2-95 (121)
81 cd04369 Bromodomain Bromodomai 99.4 2.4E-12 5.2E-17 95.1 7.3 58 96-153 41-98 (99)
82 cd04718 BAH_plant_2 BAH, or Br 99.3 9.4E-13 2E-17 103.7 1.8 65 189-254 54-126 (148)
83 KOG1828|consensus 99.3 8E-13 1.7E-17 117.5 0.7 137 11-148 34-298 (418)
84 COG5076 Transcription factor i 99.2 2.5E-11 5.3E-16 111.3 8.7 66 97-162 188-253 (371)
85 KOG0386|consensus 99.2 8.1E-12 1.8E-16 122.2 5.4 90 7-96 1041-1130(1157)
86 cd04714 BAH_BAHCC1 BAH, or Bro 99.2 2.2E-13 4.7E-18 105.6 -6.6 79 175-253 3-94 (121)
87 KOG0008|consensus 99.2 4.5E-12 9.8E-17 126.6 0.7 130 5-134 1391-1551(1563)
88 KOG1827|consensus 99.2 4.3E-11 9.4E-16 113.5 7.0 140 57-212 2-199 (629)
89 cd05491 Bromo_TBP7_like Bromod 99.1 1.1E-10 2.3E-15 88.7 4.7 41 35-75 63-103 (119)
90 cd04715 BAH_Orc1p_like BAH, or 99.1 3.3E-12 7.3E-17 103.1 -4.5 85 171-255 25-129 (159)
91 cd05491 Bromo_TBP7_like Bromod 99.0 3.9E-10 8.4E-15 85.6 4.3 40 97-136 64-103 (119)
92 cd05494 Bromodomain_1 Bromodom 98.9 2.6E-10 5.7E-15 87.3 0.7 69 5-73 12-89 (114)
93 KOG0955|consensus 98.8 3.1E-09 6.8E-14 106.5 5.2 94 3-96 572-665 (1051)
94 cd04370 BAH BAH, or Bromo Adja 98.8 1.8E-10 4E-15 88.5 -4.6 79 174-252 2-95 (123)
95 smart00439 BAH Bromo adjacent 98.6 9E-10 1.9E-14 84.6 -5.2 65 190-254 21-94 (120)
96 KOG1245|consensus 98.5 2E-07 4.3E-12 97.0 7.9 58 97-155 1341-1398(1404)
97 cd04713 BAH_plant_3 BAH, or Br 98.3 7.3E-09 1.6E-13 82.8 -6.5 78 172-249 17-109 (146)
98 cd04712 BAH_DCM_I BAH, or Brom 98.3 1.5E-07 3.3E-12 73.7 0.6 60 190-249 35-104 (130)
99 cd04716 BAH_plantDCM_I BAH, or 98.3 1.7E-08 3.7E-13 78.1 -5.2 62 190-251 22-92 (122)
100 cd04760 BAH_Dnmt1_I BAH, or Br 98.3 1.9E-07 4E-12 72.1 0.3 57 190-246 23-85 (124)
101 PF01426 BAH: BAH domain; Int 98.2 3.4E-09 7.3E-14 81.3 -10.5 62 193-254 25-94 (119)
102 cd04721 BAH_plant_1 BAH, or Br 97.9 1E-06 2.2E-11 69.0 -1.9 82 172-253 4-97 (130)
103 KOG1828|consensus 97.6 2.5E-05 5.5E-10 70.2 2.2 77 10-87 222-298 (418)
104 cd04709 BAH_MTA BAH, or Bromo 97.6 1E-05 2.3E-10 65.7 -1.3 57 192-248 24-110 (164)
105 KOG0386|consensus 97.5 8.2E-05 1.8E-09 74.2 3.9 62 97-158 1070-1131(1157)
106 cd04708 BAH_plantDCM_II BAH, o 97.1 0.00018 4E-09 60.1 1.2 44 208-251 69-119 (202)
107 cd04719 BAH_Orc1p_animal BAH, 97.0 8.1E-05 1.8E-09 58.0 -1.7 75 176-250 4-100 (128)
108 KOG0955|consensus 97.0 0.00075 1.6E-08 68.7 4.4 59 97-155 605-663 (1051)
109 cd04711 BAH_Dnmt1_II BAH, or B 96.6 0.0011 2.3E-08 51.8 1.7 37 207-243 54-99 (137)
110 cd04710 BAH_fungalPHD BAH, or 96.4 0.00066 1.4E-08 53.5 -0.3 78 170-247 6-106 (135)
111 cd05493 Bromo_ALL-1 Bromodomai 96.2 0.011 2.5E-07 46.0 5.5 45 36-80 59-103 (131)
112 cd05493 Bromo_ALL-1 Bromodomai 95.5 0.026 5.7E-07 44.0 4.7 60 97-156 59-118 (131)
113 KOG0644|consensus 91.9 0.17 3.6E-06 50.4 3.8 62 32-93 1049-1110(1113)
114 KOG1886|consensus 89.4 0.15 3.3E-06 47.7 0.9 59 193-251 73-143 (464)
115 KOG0644|consensus 89.4 0.26 5.6E-06 49.1 2.5 56 97-152 1053-1108(1113)
116 cd04720 BAH_Orc1p_Yeast BAH, o 89.3 0.12 2.5E-06 42.8 0.1 75 172-246 49-145 (179)
117 cd05494 Bromodomain_1 Bromodom 81.0 0.23 4.9E-06 37.9 -1.9 42 94-135 42-90 (114)
118 TIGR02606 antidote_CC2985 puta 70.2 7.6 0.00016 26.7 3.6 28 40-67 12-39 (69)
119 KOG0732|consensus 68.4 1.9 4.1E-05 44.6 0.4 62 14-75 533-601 (1080)
120 TIGR02606 antidote_CC2985 puta 65.1 11 0.00024 25.9 3.6 27 101-127 12-38 (69)
121 PF03693 RHH_2: Uncharacterise 60.5 13 0.00028 26.4 3.4 26 41-66 16-41 (80)
122 PF03693 RHH_2: Uncharacterise 48.3 27 0.00058 24.8 3.4 26 102-127 16-41 (80)
123 COG3197 FixS Uncharacterized p 29.1 23 0.00049 23.5 0.4 10 223-232 26-35 (58)
124 PF08339 RTX_C: RTX C-terminal 29.1 11 0.00024 29.9 -1.2 21 221-241 36-58 (145)
125 PF14372 DUF4413: Domain of un 28.0 2.4E+02 0.0052 20.5 6.0 49 109-157 3-51 (101)
126 cd00256 VATPase_H VATPase_H, r 27.0 4.4E+02 0.0096 24.9 8.7 88 98-185 248-356 (429)
127 PF03597 CcoS: Cytochrome oxid 26.4 24 0.00052 22.2 0.2 9 223-231 25-33 (45)
128 PF14372 DUF4413: Domain of un 24.3 2.9E+02 0.0062 20.1 5.9 49 48-96 3-51 (101)
129 TIGR00847 ccoS cytochrome oxid 22.1 33 0.00072 22.2 0.2 9 223-231 26-34 (51)
130 KOG1632|consensus 21.9 12 0.00025 34.3 -2.7 72 9-80 213-288 (345)
No 1
>KOG1827|consensus
Probab=99.97 E-value=2.5e-33 Score=262.71 Aligned_cols=202 Identities=21% Similarity=0.257 Sum_probs=165.7
Q ss_pred ccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHH
Q psy1225 6 NQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKL 85 (256)
Q Consensus 6 ~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L 85 (256)
.+..|+.++..|.++|+++..|+||.+|.+||+|..|++|+.++.|.+.+.|..|+.+|+.||+.||.++|.+++++..|
T Consensus 68 ~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l 147 (629)
T KOG1827|consen 68 KDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGEL 147 (629)
T ss_pred ccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCChhhhhch
Q psy1225 86 QKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFSLNELTGE 165 (256)
Q Consensus 86 ~~~f~~~~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~~~~~~~d 165 (256)
++.|.....+. .|+ +....+... ++ .-.+-..
T Consensus 148 ~~~~~~~~~~~-~d~---------------e~s~~~~~~-----------------------------l~---~~~l~~~ 179 (629)
T KOG1827|consen 148 EKYFISLEDEK-KDG---------------ELSMESNEE-----------------------------LK---AGGLHYH 179 (629)
T ss_pred hcchhhhhccc-cch---------------hhccccccc-----------------------------cc---cCCCCcc
Confidence 98886644320 000 000000000 00 0000000
Q ss_pred hhh-hhccchhcCCccccccccHHH-----HHHHHHHHHHHhcCCCC-ccceeecccceeEe-------EEeecCccccc
Q psy1225 166 LSL-MFENAKKFNPADLRLYRDAVK-----LQKLMQRKVQEVMILDI-ECQVYLISDELTHY-------QVVLTGTAEQV 231 (256)
Q Consensus 166 ~~~-~~~n~~~yn~~~~~i~~~a~~-----l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-------ev~kt~~~~~~ 231 (256)
... +-.++-.|+.++|+...++++ +.+|++.|...+|.+|+ +||||||+||+|.. |||||++|++|
T Consensus 180 ~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~ 259 (629)
T KOG1827|consen 180 ELGPVEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDD 259 (629)
T ss_pred cCCCccccCcccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCccCccccccchhcccceeccccccc
Confidence 001 234778999999999888887 23599999999999999 69999999999995 99999999999
Q ss_pred ccCCCCCCceeeeeecccccCCCC
Q psy1225 232 RLSGLPDGDWLAFTLPVVSGKASS 255 (256)
Q Consensus 232 ~~~~i~~~~~v~f~~~~~~g~~~~ 255 (256)
+++.|+|+|+||++++|++|+|..
T Consensus 260 ~~q~l~g~c~v~~~~~yi~~~p~~ 283 (629)
T KOG1827|consen 260 LVQRLLGKCYVMKPTEYISGDPEN 283 (629)
T ss_pred HHHHhhcceEEeehhHhhhcCccc
Confidence 999999999999999999999974
No 2
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.96 E-value=5e-30 Score=234.39 Aligned_cols=201 Identities=27% Similarity=0.394 Sum_probs=165.7
Q ss_pred ccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHH
Q psy1225 4 QKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAV 83 (256)
Q Consensus 4 ~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~ 83 (256)
.+....|+.++.+|+.+|++..+|+||.+|+.||||.+|+++|+.+.|+++++|..|+.|||.||+.||+++|.++.+|.
T Consensus 156 ~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~ 235 (371)
T COG5076 156 QLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAK 235 (371)
T ss_pred HhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCChhhhh
Q psy1225 84 KLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFSLNELT 163 (256)
Q Consensus 84 ~L~~~f~~~~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~~~~~~ 163 (256)
.|++.+...+..+|-.. +......+. ..... +
T Consensus 236 ~l~~~~~~~i~~~~~~~--~~~~~~~~~-------------------------~~~~~-------------~-------- 267 (371)
T COG5076 236 ELEKYFLKLIEEIPEEM--LELSIKPGR-------------------------EEREE-------------R-------- 267 (371)
T ss_pred HHHHHHHHHHHhccccc--hhhccCccc-------------------------ccccc-------------c--------
Confidence 99999999998774431 111111111 00000 0
Q ss_pred chhhhhhccchhcCCccccccccHH-----HHHHHHHHHHHHhcCCCC-ccceeecccceeEe-------EEeecCcccc
Q psy1225 164 GELSLMFENAKKFNPADLRLYRDAV-----KLQKLMQRKVQEVMILDI-ECQVYLISDELTHY-------QVVLTGTAEQ 230 (256)
Q Consensus 164 ~d~~~~~~n~~~yn~~~~~i~~~a~-----~l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-------ev~kt~~~~~ 230 (256)
. ..+. .+...+.+.|...+.+. +..++++.|.+..+..|. +||||+|++|+|.- +|.++|.+++
T Consensus 268 -~-~~~i-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
T COG5076 268 -E-SVLI-TNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTD 344 (371)
T ss_pred -h-hhcc-cccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhh
Confidence 0 0112 22266777887777666 445699999999999888 79999999999983 9999999999
Q ss_pred cccCCCCCCceeeeeecccccCCCC
Q psy1225 231 VRLSGLPDGDWLAFTLPVVSGKASS 255 (256)
Q Consensus 231 ~~~~~i~~~~~v~f~~~~~~g~~~~ 255 (256)
|++....+.|+|.+.+|++||.+..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (371)
T COG5076 345 YYKNANVLEDFVIKKTRLIREYPKL 369 (371)
T ss_pred hhhhccchhhhHhhhhhhhhccccc
Confidence 9999999999999999999998764
No 3
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=3.3e-26 Score=172.28 Aligned_cols=86 Identities=62% Similarity=0.951 Sum_probs=83.3
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..|++++++|+++|++..+||||++|++||||+||++||++|.|.++++|..|++|||.||+.||+++|.++.+|..|+
T Consensus 17 ~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~ 96 (103)
T cd05520 17 NNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQ 96 (103)
T ss_pred CCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1225 87 KLMQRK 92 (256)
Q Consensus 87 ~~f~~~ 92 (256)
++|.++
T Consensus 97 ~~f~~~ 102 (103)
T cd05520 97 KLMQAK 102 (103)
T ss_pred HHHHHh
Confidence 999875
No 4
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.8e-26 Score=173.26 Aligned_cols=90 Identities=29% Similarity=0.624 Sum_probs=86.3
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+.+|+++|++|.+||++..+||||++|++||||+||++||++|.|.++++|..|+.|||.||+.||+++|.++.+|..|+
T Consensus 18 d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~ 97 (107)
T cd05516 18 DSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQ 97 (107)
T ss_pred CcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
+.|.+.++++
T Consensus 98 ~~f~~~~~~~ 107 (107)
T cd05516 98 SVFKSARQKI 107 (107)
T ss_pred HHHHHHHhcC
Confidence 9999987653
No 5
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.4e-26 Score=173.36 Aligned_cols=94 Identities=28% Similarity=0.337 Sum_probs=89.0
Q ss_pred ccccccccCCccccccccCCCCC--CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKR--YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~--~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
+.+++....++.|++|..||+.. ++||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++
T Consensus 11 ~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 90 (107)
T cd05497 11 KVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVV 90 (107)
T ss_pred HHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45678888999999999999865 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy1225 80 RDAVKLQKLMQRKVQE 95 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~k 95 (256)
.+|..|++.|.+++.+
T Consensus 91 ~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 91 LMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998765
No 6
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.2e-26 Score=171.92 Aligned_cols=87 Identities=34% Similarity=0.612 Sum_probs=83.9
Q ss_pred ccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHH
Q psy1225 6 NQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKL 85 (256)
Q Consensus 6 ~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L 85 (256)
++.+|+++|++|+++|++..+||||++|++||||++|++||++|.|.++++|..|+.+||.||+.||+++|.++.+|..|
T Consensus 18 kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L 97 (106)
T cd05525 18 KDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRL 97 (106)
T ss_pred hccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1225 86 QKLMQRK 92 (256)
Q Consensus 86 ~~~f~~~ 92 (256)
++.|.+.
T Consensus 98 ~~~f~~~ 104 (106)
T cd05525 98 RKAYYQA 104 (106)
T ss_pred HHHHHHc
Confidence 9999764
No 7
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.1e-26 Score=169.36 Aligned_cols=91 Identities=23% Similarity=0.312 Sum_probs=86.9
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
.++++....++.|++|..||+...+||||++|++||||+||++||++|.|.|+++|.+|+.|||.||+.||+++|.++.+
T Consensus 6 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~ 85 (97)
T cd05505 6 EEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLSC 85 (97)
T ss_pred HHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1225 82 AVKLQKLMQRK 92 (256)
Q Consensus 82 A~~L~~~f~~~ 92 (256)
|..|++.|.+.
T Consensus 86 a~~le~~f~~~ 96 (97)
T cd05505 86 MRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 8
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=8.3e-26 Score=170.92 Aligned_cols=88 Identities=36% Similarity=0.705 Sum_probs=84.4
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..||++|.+|++||++.++||||++|++||||+||++||.++.|.++++|..|+.|||.||+.||+++|.++.+|..|+
T Consensus 17 d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~ 96 (105)
T cd05515 17 DGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQ 96 (105)
T ss_pred CcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy1225 87 KLMQRKVQ 94 (256)
Q Consensus 87 ~~f~~~~~ 94 (256)
++|.+...
T Consensus 97 ~~~~~~~~ 104 (105)
T cd05515 97 KVLLETKR 104 (105)
T ss_pred HHHHHHHc
Confidence 99987654
No 9
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=7.5e-26 Score=170.30 Aligned_cols=86 Identities=37% Similarity=0.699 Sum_probs=83.3
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..|++++.+|+.+|++..+||||++|++||||+||++||.+|.|.|+++|..|+.|||.||+.||+++|.++.+|..|+
T Consensus 17 d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le 96 (103)
T cd05518 17 EGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILE 96 (103)
T ss_pred ccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1225 87 KLMQRK 92 (256)
Q Consensus 87 ~~f~~~ 92 (256)
+.|.++
T Consensus 97 ~~~~~~ 102 (103)
T cd05518 97 KVLKEK 102 (103)
T ss_pred HHHHhc
Confidence 998764
No 10
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=7.4e-26 Score=170.40 Aligned_cols=85 Identities=40% Similarity=0.723 Sum_probs=82.5
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..||+++++|+++|++..+||||++|++||||+||++||+++.|.++++|..|++|||.||+.||+++|.++.+|..|+
T Consensus 17 d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~ 96 (103)
T cd05517 17 DPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIK 96 (103)
T ss_pred CcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy1225 87 KLMQR 91 (256)
Q Consensus 87 ~~f~~ 91 (256)
+.|..
T Consensus 97 ~~f~~ 101 (103)
T cd05517 97 KIFTA 101 (103)
T ss_pred HHHHh
Confidence 99875
No 11
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.7e-26 Score=168.57 Aligned_cols=91 Identities=22% Similarity=0.367 Sum_probs=85.7
Q ss_pred CccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHH
Q psy1225 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYR 80 (256)
Q Consensus 1 l~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~ 80 (256)
|+.+++... ++.|++|..||+...+||||.+|++||||+||++||++|.|+++++|.+|++|||.||..||+++|.++.
T Consensus 8 L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~ 86 (99)
T cd05508 8 LKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQ 86 (99)
T ss_pred HHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 455677777 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1225 81 DAVKLQKLMQRK 92 (256)
Q Consensus 81 ~A~~L~~~f~~~ 92 (256)
+|..|.+.+...
T Consensus 87 ~A~~l~~~~~~e 98 (99)
T cd05508 87 AAKAIVKICEQE 98 (99)
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 12
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9.5e-26 Score=173.63 Aligned_cols=104 Identities=28% Similarity=0.405 Sum_probs=95.4
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC-CchhHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPA-DSRLYR 80 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~-~S~i~~ 80 (256)
+++++....++.|++|..||+...+||||++|++||||+||++||.+|.|.++++|..|++|||.||+.||++ +|.++.
T Consensus 11 ~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~~ 90 (119)
T cd05496 11 KELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIYS 90 (119)
T ss_pred HHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Confidence 4577888899999999999999999999999999999999999999999999999999999999999999985 899999
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHH
Q psy1225 81 DAVKLQKLMQRKVQENPRSLLTIGK 105 (256)
Q Consensus 81 ~A~~L~~~f~~~~~klP~dl~~I~~ 105 (256)
+|..|++.|.+.+.+++-.+..+.+
T Consensus 91 ~a~~L~~~F~~~~~~l~~~~~~~~~ 115 (119)
T cd05496 91 MTLRLSALFEEHIKKIISDWKSALK 115 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888555554443
No 13
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=2.2e-25 Score=170.58 Aligned_cols=90 Identities=34% Similarity=0.644 Sum_probs=86.3
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..|++++.+|.++|++..+||||++|++||||+||++||+++.|.|+++|.+|+.|||.||+.||+++|.++++|..|+
T Consensus 19 ~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~ 98 (113)
T cd05524 19 SEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLW 98 (113)
T ss_pred ccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
+.|.+.+.++
T Consensus 99 ~~f~~~~~~~ 108 (113)
T cd05524 99 ELFLSARNEV 108 (113)
T ss_pred HHHHHHHHHh
Confidence 9999887665
No 14
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.3e-25 Score=169.41 Aligned_cols=106 Identities=27% Similarity=0.405 Sum_probs=99.9
Q ss_pred CccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHH
Q psy1225 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYR 80 (256)
Q Consensus 1 l~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~ 80 (256)
|++++++...++.|.+|..||+...+|+||++|++||||+||++||++|.|+++++|.+|+++||.||..||+++|.++.
T Consensus 5 l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~ 84 (112)
T cd05511 5 LDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTK 84 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHH
Q psy1225 81 DAVKLQKLMQRKVQENPRSLLTIGKT 106 (256)
Q Consensus 81 ~A~~L~~~f~~~~~klP~dl~~I~~k 106 (256)
+|..|.+.+...+.++|-.+++..+.
T Consensus 85 ~A~~l~~~~~~~~~~~~~~~~~~~~~ 110 (112)
T cd05511 85 KAKEMLELAEELLAEREEKLTQLEKN 110 (112)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 99999999999999887777766654
No 15
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.1e-25 Score=165.51 Aligned_cols=92 Identities=30% Similarity=0.543 Sum_probs=88.3
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
++++++...++.+.+|+.||+...+|+||++|++||||+||++||++|.|+|+++|.+|++|||.||+.||+++|.++++
T Consensus 6 ~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~ 85 (97)
T cd05503 6 ETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRA 85 (97)
T ss_pred HHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1225 82 AVKLQKLMQRKV 93 (256)
Q Consensus 82 A~~L~~~f~~~~ 93 (256)
|..|++.|++.+
T Consensus 86 a~~l~~~f~~~~ 97 (97)
T cd05503 86 GHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 16
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4e-25 Score=166.90 Aligned_cols=94 Identities=26% Similarity=0.398 Sum_probs=89.1
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
.++++....++.|.+|.+||+...+|+||++|++||||+||++||++|.|.+++||.+|+.|||.||..||+++|.++.+
T Consensus 9 ~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~~ 88 (104)
T cd05507 9 LLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYLM 88 (104)
T ss_pred HHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy1225 82 AVKLQKLMQRKVQE 95 (256)
Q Consensus 82 A~~L~~~f~~~~~k 95 (256)
|..|++.+...+..
T Consensus 89 A~~l~~~~~~~~~~ 102 (104)
T cd05507 89 AVEMQREVMSQIQQ 102 (104)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998887653
No 17
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.7e-25 Score=165.92 Aligned_cols=86 Identities=40% Similarity=0.711 Sum_probs=83.4
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..|++++++|.+||++..+||||++|++||||++|++||++|.|.|+++|.+|+++||.||+.||+++|.++.+|..|+
T Consensus 17 ~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~ 96 (103)
T cd05519 17 DETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEME 96 (103)
T ss_pred CcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 55699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1225 87 KLMQRK 92 (256)
Q Consensus 87 ~~f~~~ 92 (256)
+.|.++
T Consensus 97 ~~f~~~ 102 (103)
T cd05519 97 KAFKKK 102 (103)
T ss_pred HHHHHh
Confidence 999875
No 18
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5e-25 Score=169.12 Aligned_cols=95 Identities=29% Similarity=0.496 Sum_probs=90.9
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
.++++....++.+.+|..||+...+||||++|++||||+||++||++|.|.|+++|.+|+.|||.||..||+++|.++.+
T Consensus 18 ~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~~~ 97 (115)
T cd05504 18 EQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKA 97 (115)
T ss_pred HHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 35777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy1225 82 AVKLQKLMQRKVQEN 96 (256)
Q Consensus 82 A~~L~~~f~~~~~kl 96 (256)
|..|++.|.+.++++
T Consensus 98 A~~l~~~f~~~~~~~ 112 (115)
T cd05504 98 GTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
No 19
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.2e-25 Score=167.58 Aligned_cols=96 Identities=34% Similarity=0.455 Sum_probs=89.3
Q ss_pred ccccccccCC-ccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCc-hhH
Q psy1225 2 RPQKNQTEGG-NLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADS-RLY 79 (256)
Q Consensus 2 ~~~~~~~~~~-~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S-~i~ 79 (256)
+++++....+ +.|.+|..||++..+||||++|++||||+||++||++|.|+|+++|.+|++|||.||+.||+++| .++
T Consensus 13 ~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~~ 92 (112)
T cd05510 13 DKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPLR 92 (112)
T ss_pred HHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4677888888 89999999999999999999999999999999999999999999999999999999999999866 678
Q ss_pred HHHHHHHHHHHHHHhccc
Q psy1225 80 RDAVKLQKLMQRKVQENP 97 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~klP 97 (256)
++|..|++.+...+..+|
T Consensus 93 ~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 93 RHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 999999999999887764
No 20
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=8.2e-25 Score=164.55 Aligned_cols=96 Identities=33% Similarity=0.593 Sum_probs=91.6
Q ss_pred CccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHH
Q psy1225 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYR 80 (256)
Q Consensus 1 l~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~ 80 (256)
|+.+++....++.+.+|.+||+...+|+||++|++||||+||++||++|.|.|+++|.+|+++||.||+.||+++|.++.
T Consensus 6 ~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~ 85 (101)
T cd05509 6 LKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYK 85 (101)
T ss_pred HHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy1225 81 DAVKLQKLMQRKVQEN 96 (256)
Q Consensus 81 ~A~~L~~~f~~~~~kl 96 (256)
+|..|++.|.+.++++
T Consensus 86 ~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 86 CANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999988764
No 21
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=164.13 Aligned_cols=87 Identities=43% Similarity=0.634 Sum_probs=83.5
Q ss_pred ccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHH
Q psy1225 6 NQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKL 85 (256)
Q Consensus 6 ~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L 85 (256)
++.+|++++.+|+++|++..+||||++|++||||++|++||+++.|.++++|..|+.+||.||+.||+++|.++.+|..|
T Consensus 17 ~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l 96 (104)
T cd05522 17 RDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLL 96 (104)
T ss_pred hCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1225 86 QKLMQRK 92 (256)
Q Consensus 86 ~~~f~~~ 92 (256)
++.|...
T Consensus 97 ~~~f~~l 103 (104)
T cd05522 97 EKEARLL 103 (104)
T ss_pred HHHHHHh
Confidence 9998763
No 22
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=9.7e-25 Score=165.76 Aligned_cols=94 Identities=30% Similarity=0.488 Sum_probs=87.0
Q ss_pred ccccccccCC-ccccccccCCCCC--CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q psy1225 2 RPQKNQTEGG-NLSEPFLKLPAKR--YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRL 78 (256)
Q Consensus 2 ~~~~~~~~~~-~~s~~F~~~p~~~--~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i 78 (256)
.++++....+ +.|++|..||+.. ++||||++|++||||+||++||.+|.|.++.+|.+|++|||.||+.||+++|.+
T Consensus 9 ~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 88 (108)
T cd05495 9 MPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRV 88 (108)
T ss_pred HHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 3456667677 9999999998865 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy1225 79 YRDAVKLQKLMQRKVQE 95 (256)
Q Consensus 79 ~~~A~~L~~~f~~~~~k 95 (256)
+++|..|++.|.+.+..
T Consensus 89 ~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 89 YKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 23
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=9.3e-25 Score=162.97 Aligned_cols=89 Identities=30% Similarity=0.476 Sum_probs=85.3
Q ss_pred CccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHH
Q psy1225 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYR 80 (256)
Q Consensus 1 l~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~ 80 (256)
|+.+++....++.+.+|..||+...+||||++|++||||+||++||.++.|+++++|..|++|||.||..||+++|.+++
T Consensus 6 l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~ 85 (98)
T cd05512 6 LRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYR 85 (98)
T ss_pred HHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1225 81 DAVKLQKLM 89 (256)
Q Consensus 81 ~A~~L~~~f 89 (256)
+|..|++.-
T Consensus 86 ~A~~l~~~~ 94 (98)
T cd05512 86 AAVRLRDQG 94 (98)
T ss_pred HHHHHHHhh
Confidence 999998753
No 24
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.3e-24 Score=162.87 Aligned_cols=86 Identities=34% Similarity=0.535 Sum_probs=82.5
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..|++++.+|+.+|+++.+||||++|++||||+||++||++ |.++++|.+|+.+||.||+.||+++|.++.+|..|+
T Consensus 18 ~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le 95 (106)
T cd05521 18 EENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILE 95 (106)
T ss_pred CcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 556999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy1225 87 KLMQRKVQ 94 (256)
Q Consensus 87 ~~f~~~~~ 94 (256)
+.|.+++.
T Consensus 96 ~~~~~~~~ 103 (106)
T cd05521 96 KYINDVII 103 (106)
T ss_pred HHHHHhhc
Confidence 99988754
No 25
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=3.4e-24 Score=159.69 Aligned_cols=88 Identities=27% Similarity=0.383 Sum_probs=83.4
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
.++++....++.+.+|..||+...+||||++|++||||+||++||+++.|.|+++|.+|++|||.||..||+++|.++++
T Consensus 7 ~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~ 86 (98)
T cd05513 7 EQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKA 86 (98)
T ss_pred HHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1225 82 AVKLQKLM 89 (256)
Q Consensus 82 A~~L~~~f 89 (256)
|..|...-
T Consensus 87 A~~L~~~~ 94 (98)
T cd05513 87 AKKLLHSG 94 (98)
T ss_pred HHHHHHhh
Confidence 99997653
No 26
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.90 E-value=4.7e-24 Score=162.80 Aligned_cols=96 Identities=25% Similarity=0.413 Sum_probs=90.5
Q ss_pred CccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC----c
Q psy1225 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD----S 76 (256)
Q Consensus 1 l~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~----S 76 (256)
|+.+++....++.+.+|.+||+...+||||++|++||||+||++||++|.|.|+++|.+|+++||.||+.||+++ |
T Consensus 8 L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s 87 (112)
T cd05528 8 LRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADK 87 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCcccc
Confidence 467788889999999999999999999999999999999999999999999999999999999999999999994 6
Q ss_pred hhHHHHHHHHHHHHHHHhcc
Q psy1225 77 RLYRDAVKLQKLMQRKVQEN 96 (256)
Q Consensus 77 ~i~~~A~~L~~~f~~~~~kl 96 (256)
.++.+|..|++.+..++.+.
T Consensus 88 ~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 88 LIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 27
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=8e-24 Score=159.43 Aligned_cols=84 Identities=31% Similarity=0.554 Sum_probs=80.4
Q ss_pred CCccccccccCCCCC--CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHH
Q psy1225 10 GGNLSEPFLKLPAKR--YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87 (256)
Q Consensus 10 ~~~~s~~F~~~p~~~--~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~ 87 (256)
.+++|++|+.||+.. .+||||++|++||||++|++||++|.|+++++|.+|+++||.||+.||+++|.++.+|..|++
T Consensus 17 ~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~~~a~~l~~ 96 (102)
T cd05499 17 HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEE 96 (102)
T ss_pred CCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 478999999998877 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy1225 88 LMQRKV 93 (256)
Q Consensus 88 ~f~~~~ 93 (256)
.|+.++
T Consensus 97 ~fe~~~ 102 (102)
T cd05499 97 VFNDKW 102 (102)
T ss_pred HHHHhC
Confidence 998764
No 28
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.2e-23 Score=158.77 Aligned_cols=93 Identities=32% Similarity=0.493 Sum_probs=87.9
Q ss_pred cccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 3 PQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKS---GHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 3 ~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~---~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
+++.+...++.|.+|..||+. .+|+||++|++||||+||++||++ |.|.++++|.+|++|||.||+.||+++|.++
T Consensus 11 ~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~ 89 (109)
T cd05502 11 RLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVA 89 (109)
T ss_pred HHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 567777889999999999998 899999999999999999999998 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy1225 80 RDAVKLQKLMQRKVQEN 96 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~kl 96 (256)
.+|..|++.|.+.+.++
T Consensus 90 ~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 90 QAGKELELFFEEQLKEI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 29
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.8e-23 Score=154.98 Aligned_cols=90 Identities=24% Similarity=0.326 Sum_probs=83.2
Q ss_pred cccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHH
Q psy1225 3 PQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDA 82 (256)
Q Consensus 3 ~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A 82 (256)
.+|...-.++.|.+|...| ..+||||++|++||||+||++||.+|.|.|+++|.+|++|||.||+.||+++ .++..|
T Consensus 9 ~il~~l~~~~~s~~f~~~p--~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a 85 (102)
T cd05501 9 FLLLKVYCMSKSGFFISKP--YYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVG 85 (102)
T ss_pred HHHHHHHhCcccccccCCC--CCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHH
Confidence 4667777889999997765 4889999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhc
Q psy1225 83 VKLQKLMQRKVQE 95 (256)
Q Consensus 83 ~~L~~~f~~~~~k 95 (256)
..|++.|++++.+
T Consensus 86 ~~L~~~Fek~~~~ 98 (102)
T cd05501 86 ITLEKKFEKNFKE 98 (102)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 30
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.4e-23 Score=155.38 Aligned_cols=90 Identities=31% Similarity=0.413 Sum_probs=81.9
Q ss_pred ccccccC---CccccccccCCCCC--CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q psy1225 4 QKNQTEG---GNLSEPFLKLPAKR--YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRL 78 (256)
Q Consensus 4 ~~~~~~~---~~~s~~F~~~p~~~--~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i 78 (256)
+++.... ++++.+|..||+.. .+|+||++|++||||++|++||++|.|.|+++|..|+++||.||+.||+++|.+
T Consensus 8 il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i 87 (102)
T cd05498 8 ILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPV 87 (102)
T ss_pred HHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 4444444 49999999998754 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1225 79 YRDAVKLQKLMQRKV 93 (256)
Q Consensus 79 ~~~A~~L~~~f~~~~ 93 (256)
+.+|..|++.|++++
T Consensus 88 ~~~a~~l~~~fe~~~ 102 (102)
T cd05498 88 HAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998764
No 31
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=6.7e-23 Score=153.59 Aligned_cols=92 Identities=27% Similarity=0.379 Sum_probs=85.8
Q ss_pred ccccccccCCccccccccCCCCC--CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKR--YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~--~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
+++++....++.+.+|..|++.. .+|+||++|++||||+||++||+++.|.++++|.+|+.+||.||..||+++|.++
T Consensus 6 ~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~ 85 (99)
T cd05506 6 GTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVH 85 (99)
T ss_pred HHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35677788899999999998754 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1225 80 RDAVKLQKLMQRKV 93 (256)
Q Consensus 80 ~~A~~L~~~f~~~~ 93 (256)
.+|..|++.|++++
T Consensus 86 ~~a~~l~~~fe~~w 99 (99)
T cd05506 86 TMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998764
No 32
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=7.7e-23 Score=154.29 Aligned_cols=91 Identities=29% Similarity=0.399 Sum_probs=85.6
Q ss_pred ccccccccCCccccccccCCCC--CCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAK--RYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~--~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
.++++....++.|.+|..||+. ..+|+||++|++||||++|++||++|.|.++++|.+|+++||.||..||+++|.++
T Consensus 10 ~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 89 (103)
T cd05500 10 LSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVS 89 (103)
T ss_pred HHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4577888899999999999885 47999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1225 80 RDAVKLQKLMQRK 92 (256)
Q Consensus 80 ~~A~~L~~~f~~~ 92 (256)
.+|..|++.|++.
T Consensus 90 ~~A~~l~~~fe~~ 102 (103)
T cd05500 90 QMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 33
>smart00297 BROMO bromo domain.
Probab=99.88 E-value=1e-22 Score=154.43 Aligned_cols=94 Identities=43% Similarity=0.740 Sum_probs=88.8
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
..+++....++++.+|..||++..+|+||.+|++||||++|++||++|.|.|+++|.+|+.+||.||..||+++|.++.+
T Consensus 13 ~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~~ 92 (107)
T smart00297 13 KAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEVYKD 92 (107)
T ss_pred HHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 34666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy1225 82 AVKLQKLMQRKVQE 95 (256)
Q Consensus 82 A~~L~~~f~~~~~k 95 (256)
|..|.+.|...+.+
T Consensus 93 a~~l~~~f~~~~~~ 106 (107)
T smart00297 93 AKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988765
No 34
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.7e-22 Score=157.95 Aligned_cols=87 Identities=26% Similarity=0.416 Sum_probs=83.7
Q ss_pred cCCccccccccCCCCC-CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHH
Q psy1225 9 EGGNLSEPFLKLPAKR-YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87 (256)
Q Consensus 9 ~~~~~s~~F~~~p~~~-~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~ 87 (256)
.+++.+.+|..||+.. .+|+||++|++||||+||++||++|.|+++++|..|++|||.||..||+++|.++.+|..|++
T Consensus 40 ~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~ 119 (128)
T cd05529 40 LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSD 119 (128)
T ss_pred ccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q psy1225 88 LMQRKVQE 95 (256)
Q Consensus 88 ~f~~~~~k 95 (256)
.|...+..
T Consensus 120 ~~~~~l~~ 127 (128)
T cd05529 120 WLLRILSS 127 (128)
T ss_pred HHHHHhcc
Confidence 99887653
No 35
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=7.3e-22 Score=148.96 Aligned_cols=87 Identities=28% Similarity=0.444 Sum_probs=81.4
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+.+|+.+|++|+++|++ .|+||.+|+.||||.+|++||++|.|.++++|..|+.+||.||+.||+++|.+|.+|..|+
T Consensus 20 D~~Gr~~s~~f~~LP~~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq 97 (110)
T cd05526 20 DEEGRCYSDSLAELPEL--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQ 97 (110)
T ss_pred CCCCCCchHHHHHCCCc--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 56799999999999994 4778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy1225 87 KLMQRKVQE 95 (256)
Q Consensus 87 ~~f~~~~~k 95 (256)
++|.....+
T Consensus 98 ~~f~~~rd~ 106 (110)
T cd05526 98 QFFIKIRDE 106 (110)
T ss_pred HHHHHHHHH
Confidence 999876543
No 36
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=4.8e-21 Score=138.94 Aligned_cols=82 Identities=39% Similarity=0.690 Sum_probs=77.0
Q ss_pred cccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHH
Q psy1225 3 PQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDA 82 (256)
Q Consensus 3 ~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A 82 (256)
++++....++.+.+|..+|+...+|+|+++|++||||++|++||++|.|+++++|.+|+++||.||..||+++|.++.+|
T Consensus 3 ~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A 82 (84)
T PF00439_consen 3 EILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAA 82 (84)
T ss_dssp HHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHh
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q psy1225 83 VK 84 (256)
Q Consensus 83 ~~ 84 (256)
..
T Consensus 83 ~~ 84 (84)
T PF00439_consen 83 EK 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 74
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.7e-20 Score=141.95 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=75.9
Q ss_pred ccccccccCC-----CCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 12 NLSEPFLKLP-----AKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 12 ~~s~~F~~~p-----~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
|-+.||..++ .+..+|+|+.+|++||||+||++||++|.|++++||.+|+.+||+||..||+++|.++..|..|.
T Consensus 17 p~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~ 96 (109)
T cd05492 17 PPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLY 96 (109)
T ss_pred cccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3456777775 44579999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
+...+.+.++
T Consensus 97 ~d~~~el~Ei 106 (109)
T cd05492 97 RDTCHDLREL 106 (109)
T ss_pred HHHHHHHHHH
Confidence 8877766554
No 38
>KOG1474|consensus
Probab=99.83 E-value=7.8e-21 Score=183.91 Aligned_cols=152 Identities=30% Similarity=0.484 Sum_probs=138.5
Q ss_pred ccccCCccccccccCCCC--CCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHH
Q psy1225 6 NQTEGGNLSEPFLKLPAK--RYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAV 83 (256)
Q Consensus 6 ~~~~~~~~s~~F~~~p~~--~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~ 83 (256)
+....+.++++|..|++. -..|+||.+|++|||+++|++++.+..|.+..+-.+|+..+|.||..||.+...+...+.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 345578899999999885 458999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHhcc-------------------------------------------------------------------
Q psy1225 84 KLQKLMQRKVQEN------------------------------------------------------------------- 96 (256)
Q Consensus 84 ~L~~~f~~~~~kl------------------------------------------------------------------- 96 (256)
.+.+.+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (640)
T KOG1474|consen 82 SLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPF 161 (640)
T ss_pred cchhhcccccccccccccCCcccccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCccccc
Confidence 8888775433322
Q ss_pred --------------------------------------------------------------------------------
Q psy1225 97 -------------------------------------------------------------------------------- 96 (256)
Q Consensus 97 -------------------------------------------------------------------------------- 96 (256)
T Consensus 162 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~aw 241 (640)
T KOG1474|consen 162 KSKNGVKKVADTCVKSYKSKSEREPSPGQKREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAW 241 (640)
T ss_pred ccccchhhhhccccccccccCcCCCCccccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCC
Confidence
Q ss_pred ----------------------cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1225 97 ----------------------PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154 (256)
Q Consensus 97 ----------------------P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~ 154 (256)
||||+||++|+.++.|.++.+|..||+|||.||++||++++.||.+|..|+++|+.+|
T Consensus 242 pF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw 321 (640)
T KOG1474|consen 242 PFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERW 321 (640)
T ss_pred CcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC
Q psy1225 155 QEF 157 (256)
Q Consensus 155 ~~~ 157 (256)
..+
T Consensus 322 ~~~ 324 (640)
T KOG1474|consen 322 ASM 324 (640)
T ss_pred hhc
Confidence 875
No 39
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.83 E-value=8.4e-21 Score=140.77 Aligned_cols=90 Identities=42% Similarity=0.704 Sum_probs=84.3
Q ss_pred cccccccCC--ccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHH
Q psy1225 3 PQKNQTEGG--NLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYR 80 (256)
Q Consensus 3 ~~~~~~~~~--~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~ 80 (256)
.+++....+ +.+.+|..||+...+|+|+++|++||||++|++||.+|.|.++++|.+|+.+|+.||..||+++|.++.
T Consensus 7 ~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~ 86 (99)
T cd04369 7 SLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYK 86 (99)
T ss_pred HHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 455566666 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1225 81 DAVKLQKLMQRK 92 (256)
Q Consensus 81 ~A~~L~~~f~~~ 92 (256)
.|..|...+.+.
T Consensus 87 ~a~~l~~~~~~~ 98 (99)
T cd04369 87 DAKKLEKLFEKL 98 (99)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 40
>KOG1474|consensus
Probab=99.82 E-value=1.4e-20 Score=182.17 Aligned_cols=94 Identities=30% Similarity=0.425 Sum_probs=90.0
Q ss_pred cccccccCCccccccccCCCC--CCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHH
Q psy1225 3 PQKNQTEGGNLSEPFLKLPAK--RYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYR 80 (256)
Q Consensus 3 ~~~~~~~~~~~s~~F~~~p~~--~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~ 80 (256)
.+|+....|..++||..|||. -++|||++||++||||+||++||.+|.|.++.||.+||+|||.||.+||.+++.+|.
T Consensus 229 ~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~ 308 (640)
T KOG1474|consen 229 SILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYA 308 (640)
T ss_pred HHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 578888999999999999885 579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy1225 81 DAVKLQKLMQRKVQEN 96 (256)
Q Consensus 81 ~A~~L~~~f~~~~~kl 96 (256)
+|..|+++|+..|..+
T Consensus 309 Ma~~L~~~Fe~rw~~~ 324 (640)
T KOG1474|consen 309 MAKKLQEVFEERWASM 324 (640)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999999986
No 41
>KOG1472|consensus
Probab=99.65 E-value=1.4e-16 Score=152.46 Aligned_cols=68 Identities=40% Similarity=0.616 Sum_probs=64.2
Q ss_pred CccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q psy1225 11 GNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRL 78 (256)
Q Consensus 11 ~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i 78 (256)
+..+.+|..++++...|+||.+|+-||||.++.+|+..+.|.+.++|+.|+.+||.||..||...+..
T Consensus 301 ~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~ 368 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHG 368 (720)
T ss_pred cccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchh
Confidence 57789999999999999999999999999999999999999999999999999999999999976533
No 42
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=1.8e-15 Score=114.69 Aligned_cols=63 Identities=29% Similarity=0.387 Sum_probs=60.2
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+-||||+||++|++++.|.++++|.+|+.|||.||+.||+++|.++..|..|++.|.++++++
T Consensus 45 k~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 45 KTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred cCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 349999999999999999999999999999999999999999999999999999999998764
No 43
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=1.1e-15 Score=113.78 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=56.7
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
+-||||+||++|++++.|.|+++|.+|+.|||.||+.||+++|.++..|..|++.|.++
T Consensus 38 k~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 38 TNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 33999999999999999999999999999999999999999999999999999999875
No 44
>KOG0008|consensus
Probab=99.62 E-value=8e-16 Score=152.79 Aligned_cols=154 Identities=26% Similarity=0.372 Sum_probs=134.2
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
..+.|+...-+-+.+|..|++...++|||.||+.||+|.++++.+.++.|.+-+.|..|+.+|+.|...||++-+.....
T Consensus 1267 ~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~ 1346 (1563)
T KOG0008|consen 1267 ETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQ 1346 (1563)
T ss_pred HHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHH
Confidence 34567778888999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHhcc------------------------------------------------------------cccHH
Q psy1225 82 AVKLQKLMQRKVQEN------------------------------------------------------------PRSLL 101 (256)
Q Consensus 82 A~~L~~~f~~~~~kl------------------------------------------------------------P~dl~ 101 (256)
+..+.......+.+- |||+.
T Consensus 1347 ~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d~v~~~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~ 1426 (1563)
T KOG0008|consen 1347 QQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDDQVAFFILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLE 1426 (1563)
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhcCcccCccchhhHhhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHH
Confidence 777655443333211 99999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy1225 102 TIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155 (256)
Q Consensus 102 ~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~ 155 (256)
+|.+++..++|.+.++|.+|+++++.|+..||+.+|..-.-|.++-.+....+.
T Consensus 1427 ~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~~ 1480 (1563)
T KOG0008|consen 1427 TILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANLL 1480 (1563)
T ss_pred HHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887777776665554443
No 45
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.62 E-value=2.1e-15 Score=112.69 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=57.9
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
-||||+||++|+++++|.|+++|.+|++|||+||+.||+++ .++..|..|++.|++++++
T Consensus 39 ~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~ 98 (102)
T cd05501 39 EPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKE 98 (102)
T ss_pred CCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999 9999999999999998874
No 46
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.62 E-value=1.7e-15 Score=116.75 Aligned_cols=100 Identities=25% Similarity=0.447 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHH-HHHHhcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhC
Q psy1225 55 NELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM-QRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFN 133 (256)
Q Consensus 55 ~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~~f-~~~~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN 133 (256)
.+|.+-+..|+..... .+.|..+........+- ...+.+-||||+||++||.++.|.++++|.+|+.|||.||+.||
T Consensus 4 ~~w~~~c~~il~~l~~--~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWD--CEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHh--CCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3555555555555443 34454444433322110 01223339999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHhc
Q psy1225 134 PA-DSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 134 ~~-~s~i~~~a~~L~~~~~~~~~~ 156 (256)
++ +|.+|.+|..|++.|.++++.
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~ 105 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKK 105 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 85 999999999999999999875
No 47
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.61 E-value=3.4e-15 Score=113.39 Aligned_cols=63 Identities=30% Similarity=0.537 Sum_probs=59.7
Q ss_pred hcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 94 QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
.+-||||+||++|+++|.|.++.+|.+|+.|||.||+.||+++|.++++|..|++.|.++++.
T Consensus 43 Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 43 VKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344999999999999999999999999999999999999999999999999999999998764
No 48
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.60 E-value=4e-15 Score=112.35 Aligned_cols=63 Identities=27% Similarity=0.521 Sum_probs=59.4
Q ss_pred hcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 94 QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
.+.||+|++|++|+++|+|.++++|..|+.+||+||++||.++|++|++|..|++.|..+.++
T Consensus 44 ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 44 KKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred hcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHHH
Confidence 344999999999999999999999999999999999999999999999999999999887654
No 49
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.60 E-value=3.2e-15 Score=113.38 Aligned_cols=60 Identities=27% Similarity=0.516 Sum_probs=58.5
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
||||++|++|+++|.|.++++|..|+.|||.||+.||+++|.+|.+|..|++.|.++++.
T Consensus 47 Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 47 PVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999988764
No 50
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.59 E-value=5.6e-15 Score=113.40 Aligned_cols=63 Identities=25% Similarity=0.575 Sum_probs=60.5
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+-||||++|++|++++.|.|+++|.+|+.|||.||+.||+++|.++.+|..|++.|.++++++
T Consensus 50 ~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 50 KKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred cCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 339999999999999999999999999999999999999999999999999999999999875
No 51
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.59 E-value=4.3e-15 Score=110.77 Aligned_cols=58 Identities=33% Similarity=0.627 Sum_probs=56.6
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~ 154 (256)
||||++|++|++++.|.|+++|.+|+.|||.||+.||+++|.++++|..|++.|.++|
T Consensus 40 PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 40 PMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 52
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.59 E-value=6.5e-15 Score=111.36 Aligned_cols=57 Identities=30% Similarity=0.445 Sum_probs=55.6
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
||||++|++|++++.|.|+++|..|+.|||.||+.||+++|.++++|..|++.|.+.
T Consensus 48 P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 48 PVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999764
No 53
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.58 E-value=4.6e-15 Score=111.65 Aligned_cols=57 Identities=37% Similarity=0.658 Sum_probs=55.5
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
||||++|++|++++.|.|+++|.+|+.|||.||+.||+++|.+|.+|..|++.|.++
T Consensus 46 Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 46 PIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998764
No 54
>KOG1245|consensus
Probab=99.58 E-value=1.1e-15 Score=157.05 Aligned_cols=91 Identities=27% Similarity=0.485 Sum_probs=86.7
Q ss_pred cccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHH
Q psy1225 3 PQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDA 82 (256)
Q Consensus 3 ~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A 82 (256)
.+|.+..-|..|+||++||+...+||||+||++||||+||+.|+..|.|.++++|..|+.|||.||..||.+ |.+.++.
T Consensus 1308 ~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ag 1386 (1404)
T KOG1245|consen 1308 DILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGRAG 1386 (1404)
T ss_pred HHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhhhc
Confidence 577888899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHh
Q psy1225 83 VKLQKLMQRKVQ 94 (256)
Q Consensus 83 ~~L~~~f~~~~~ 94 (256)
..|.+.|...+.
T Consensus 1387 ~~l~~ff~~~~~ 1398 (1404)
T KOG1245|consen 1387 TCLRRFFHKRWR 1398 (1404)
T ss_pred chHHHHHHHHHH
Confidence 999999987543
No 55
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.58 E-value=5.8e-15 Score=112.96 Aligned_cols=61 Identities=34% Similarity=0.535 Sum_probs=59.0
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
||||++|++|++++.|.|+++|.+|+.|||+||+.||+++|.+|++|..|++.|.+.++++
T Consensus 48 Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 108 (113)
T cd05524 48 PIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFLSARNEV 108 (113)
T ss_pred ccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999888753
No 56
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.58 E-value=5.8e-15 Score=111.12 Aligned_cols=57 Identities=61% Similarity=0.904 Sum_probs=55.9
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
||||++|++|++++.|.++++|.+|+.|||+||+.||+++|.+|.+|..|++.|+++
T Consensus 46 PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 46 PISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999875
No 57
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.57 E-value=6.9e-15 Score=111.19 Aligned_cols=59 Identities=32% Similarity=0.657 Sum_probs=57.5
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~ 155 (256)
||||++|++|++++.|.++++|.+|+.|||.||+.||+++|.+|.+|..|++.|.++.+
T Consensus 46 PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 46 PIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999988765
No 58
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.57 E-value=1e-14 Score=109.57 Aligned_cols=62 Identities=35% Similarity=0.664 Sum_probs=59.8
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
-||||++|++|++++.|.|+++|.+|+.+||.||+.||+++|.++.+|..|++.|.++++++
T Consensus 40 ~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 40 KPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 39999999999999999999999999999999999999999999999999999999998764
No 59
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.56 E-value=1.2e-14 Score=108.86 Aligned_cols=59 Identities=31% Similarity=0.531 Sum_probs=57.0
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~ 154 (256)
-||||++|++||+++.|.++++|.+|+.+||.||+.||+++|.++.+|..|++.|+++|
T Consensus 41 ~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 41 KPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 39999999999999999999999999999999999999999999999999999999874
No 60
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.56 E-value=9.7e-15 Score=109.01 Aligned_cols=59 Identities=20% Similarity=0.373 Sum_probs=55.6
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
+-||||+||++|+++|.|.++++|.+|+.|||.||+.||+++|.++..|..|.+.+...
T Consensus 40 k~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 40 FKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 33999999999999999999999999999999999999999999999999999987653
No 61
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.56 E-value=1.3e-14 Score=109.46 Aligned_cols=62 Identities=31% Similarity=0.494 Sum_probs=59.0
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+-||||+||++|++++.|.++++|.+|+.|||.||+.||+++|.++.+|..|++.+.+++..
T Consensus 41 k~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 41 YRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 33999999999999999999999999999999999999999999999999999999888764
No 62
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.54 E-value=1.5e-14 Score=108.87 Aligned_cols=56 Identities=36% Similarity=0.683 Sum_probs=54.9
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~ 152 (256)
||||++|++|++++.|.++++|.+|+.|||.||+.||+++|.++.+|..|++.|..
T Consensus 46 PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 46 PIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999875
No 63
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.53 E-value=2.1e-14 Score=108.09 Aligned_cols=59 Identities=31% Similarity=0.580 Sum_probs=57.0
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~ 154 (256)
-||||++|++|++++.|.++++|.+|+.|||.||+.||+++|.++.+|..|++.|+++|
T Consensus 44 ~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 44 KPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 39999999999999999999999999999999999999999999999999999998764
No 64
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.53 E-value=3.4e-14 Score=105.87 Aligned_cols=54 Identities=31% Similarity=0.565 Sum_probs=52.0
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKL 149 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~ 149 (256)
-||||+||++|++++.|.|+++|.+|+.|||.||+.||+++|.+|++|..|.+.
T Consensus 40 ~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 40 HPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHS 93 (98)
T ss_pred CccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHh
Confidence 399999999999999999999999999999999999999999999999999764
No 65
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.53 E-value=2.6e-14 Score=107.56 Aligned_cols=58 Identities=34% Similarity=0.545 Sum_probs=56.6
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~ 154 (256)
||||++|+++++++.|.|+++|..|+.|||.||+.||+++|.++.+|..|++.|+++|
T Consensus 45 Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 45 PMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 66
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.52 E-value=9.8e-14 Score=105.89 Aligned_cols=64 Identities=28% Similarity=0.364 Sum_probs=58.5
Q ss_pred hcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCC-HHHHHHHHHHHHHHHHHhcC
Q psy1225 94 QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADS-RLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s-~i~~~a~~L~~~~~~~~~~~ 157 (256)
.+-||||++|++|++++.|.|+++|.+|+.|||.||+.||+++| .++++|..|++.++..+..+
T Consensus 45 Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 45 IKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred hcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 33499999999999999999999999999999999999999877 57789999999999988764
No 67
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.51 E-value=6.2e-14 Score=106.75 Aligned_cols=62 Identities=32% Similarity=0.565 Sum_probs=59.0
Q ss_pred cccccHHHHHHHhhc---CCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKS---GHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~---~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+-||||++|++||++ +.|.++++|.+|+.|||.||+.||+++|.++.+|..|++.|.+++++
T Consensus 41 ~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 105 (109)
T cd05502 41 KTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKE 105 (109)
T ss_pred CCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 349999999999998 69999999999999999999999999999999999999999999875
No 68
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.51 E-value=3.6e-14 Score=106.95 Aligned_cols=57 Identities=33% Similarity=0.633 Sum_probs=55.8
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
||||++|++|++++.|.|+.+|.+|+.|||.||+.||+++|.++.+|..|++.|.++
T Consensus 46 Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 46 PIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999865
No 69
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.51 E-value=6.7e-14 Score=104.40 Aligned_cols=56 Identities=32% Similarity=0.581 Sum_probs=53.1
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHH
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~ 150 (256)
+-||||+||++|++++.|.++++|..|+.|||.||+.||+++|.+|++|..|++.-
T Consensus 39 k~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~~ 94 (98)
T cd05512 39 KQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRAAVRLRDQG 94 (98)
T ss_pred cCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhh
Confidence 33999999999999999999999999999999999999999999999999998853
No 70
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.50 E-value=1.5e-13 Score=104.96 Aligned_cols=61 Identities=23% Similarity=0.413 Sum_probs=57.9
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCC----CHHHHHHHHHHHHHHHHHhc
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD----SRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~----s~i~~~a~~L~~~~~~~~~~ 156 (256)
-||||+||++|++++.|.|+++|.+|+.|||.||+.||+++ |.++.+|..|++.+.+++.+
T Consensus 42 ~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~ 106 (112)
T cd05528 42 QPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIRSRACELRDEVHAMIEA 106 (112)
T ss_pred CCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCccccHHHHHHHHHHHHHHHHHHh
Confidence 39999999999999999999999999999999999999994 79999999999999988875
No 71
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.49 E-value=9.3e-14 Score=106.16 Aligned_cols=63 Identities=24% Similarity=0.389 Sum_probs=60.2
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+-||||++|++|++++.|.++++|..|+.|||.||+.||+++|.++.+|..|.+.+.++++++
T Consensus 38 ~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 38 KRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred cCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 339999999999999999999999999999999999999999999999999999999998865
No 72
>smart00297 BROMO bromo domain.
Probab=99.49 E-value=2.2e-13 Score=103.04 Aligned_cols=61 Identities=44% Similarity=0.789 Sum_probs=59.2
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
-||||++|++|++++.|.++++|.+|+.+||.||..||+++|.++..|..|++.|.+++++
T Consensus 46 ~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 46 KPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999999999999999999999999999999999999875
No 73
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.49 E-value=1e-13 Score=104.91 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=58.9
Q ss_pred hcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 94 QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
.+-||||+||++|+++++|.++++|..|+.|||.||..||+++|.++..|..|-+.....+.|+
T Consensus 43 Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 43 IHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3349999999999999999999999999999999999999999999999999998887776653
No 74
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.48 E-value=1.2e-13 Score=104.32 Aligned_cols=57 Identities=30% Similarity=0.430 Sum_probs=55.2
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~ 155 (256)
||||++|++|+++ |.++++|.+|+.|||+||+.||+++|.+|.+|..|++.|.+++.
T Consensus 47 PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 47 PLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred CCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999998 99999999999999999999999999999999999999988764
No 75
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.47 E-value=1.4e-13 Score=103.75 Aligned_cols=57 Identities=32% Similarity=0.521 Sum_probs=55.7
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
||||++|++|++++.|.++.+|..|+.+||.||+.||+++|.++.+|..|++.|++.
T Consensus 46 P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 46 PMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999865
No 76
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.46 E-value=1.9e-13 Score=106.81 Aligned_cols=62 Identities=27% Similarity=0.448 Sum_probs=59.1
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+.||||++|++|++++.|.+.++|..|+.|||.||+.||+++|.++..|..|++.|...+++
T Consensus 66 ~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 66 PVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 34999999999999999999999999999999999999999999999999999999988764
No 77
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.46 E-value=1.9e-13 Score=103.12 Aligned_cols=57 Identities=44% Similarity=0.622 Sum_probs=55.5
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
||||++|++|++++.|.++.+|.+|+.+||.||+.||+++|.+|.+|..|++.|.+.
T Consensus 47 Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 47 PISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998864
No 78
>KOG1472|consensus
Probab=99.40 E-value=1.5e-13 Score=132.02 Aligned_cols=94 Identities=30% Similarity=0.481 Sum_probs=89.2
Q ss_pred cccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHH
Q psy1225 3 PQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDA 82 (256)
Q Consensus 3 ~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A 82 (256)
.++.+...|..++||.+|+...+.||||++|++||||.||+.+|+.+.|..+++|.+|+.++|.||+.||++.+..+++|
T Consensus 613 ~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~ 692 (720)
T KOG1472|consen 613 NILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCA 692 (720)
T ss_pred hHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q psy1225 83 VKLQKLMQRKVQEN 96 (256)
Q Consensus 83 ~~L~~~f~~~~~kl 96 (256)
..|...+..++...
T Consensus 693 ~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 693 QALEKFFLFKLNEL 706 (720)
T ss_pred cchhhhhcchhhhh
Confidence 99999988776544
No 79
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.37 E-value=1.8e-12 Score=93.74 Aligned_cols=51 Identities=41% Similarity=0.821 Sum_probs=46.7
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHH
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVK 145 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~ 145 (256)
+.||||++|++|+++|.|.++++|..|+.+||.||+.||+++|.+|.+|.+
T Consensus 34 ~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 34 KNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp SSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred hhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 449999999999999999999999999999999999999999999999974
No 80
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.36 E-value=8e-15 Score=113.69 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=69.0
Q ss_pred hhcCCccccccccHHH-----HHHHHHHHHHHhcCCCC-ccceeecccceeEe-------EEeecCcccccccCCCCCCc
Q psy1225 174 KKFNPADLRLYRDAVK-----LQKLMQRKVQEVMILDI-ECQVYLISDELTHY-------QVVLTGTAEQVRLSGLPDGD 240 (256)
Q Consensus 174 ~~yn~~~~~i~~~a~~-----l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-------ev~kt~~~~~~~~~~i~~~~ 240 (256)
..|+.++++..+.++. +.+|.+.|....|..++ ++|||||++|.|.. |||+|+++.++|++.|+|+|
T Consensus 2 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~~~~~~~~~Evfls~~~d~~~~~~I~~kc 81 (121)
T cd04717 2 LQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHEPTRKFYKNEVFKSPLYETVPVEEIVGKC 81 (121)
T ss_pred CEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCCCccccccCceEEcCccccccHHHhcCee
Confidence 3466777777665554 45688889888898899 69999999998742 99999999999999999999
Q ss_pred eeeeeecccccCCC
Q psy1225 241 WLAFTLPVVSGKAS 254 (256)
Q Consensus 241 ~v~f~~~~~~g~~~ 254 (256)
.||++.-|.+|+|.
T Consensus 82 ~Vl~~~~y~~~~p~ 95 (121)
T cd04717 82 AVMDVKDYIKGRPT 95 (121)
T ss_pred EEEehHHHhcCCCC
Confidence 99999999999985
No 81
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.35 E-value=2.4e-12 Score=95.07 Aligned_cols=58 Identities=45% Similarity=0.758 Sum_probs=55.9
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~ 153 (256)
-||||++|+.|++++.|.++.+|.+|+.+||.||+.||+++|.++..|..|+..+.+.
T Consensus 41 ~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 41 NPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999999999999999999999999999999998765
No 82
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.28 E-value=9.4e-13 Score=103.74 Aligned_cols=65 Identities=6% Similarity=-0.084 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCCC-ccceeecccceeEe-------EEeecCcccccccCCCCCCceeeeeecccccCCC
Q psy1225 189 KLQKLMQRKVQEVMILDI-ECQVYLISDELTHY-------QVVLTGTAEQVRLSGLPDGDWLAFTLPVVSGKAS 254 (256)
Q Consensus 189 ~l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-------ev~kt~~~~~~~~~~i~~~~~v~f~~~~~~g~~~ 254 (256)
-+.+|.+.|.+. |..|+ ++||||||+|.|.- |||+|.+|.+.+++-|+|+|+||++..|.+.++.
T Consensus 54 ~vArIekiW~~~-G~~~~~grWy~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e~~ 126 (148)
T cd04718 54 WLARIEKLWEEN-GTYWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDASND 126 (148)
T ss_pred HHHHHHHHHhcc-CceEEEEEEEeCchhccCccccccccceeeeccccccccHHHHhcccEEcCHHHcccccCC
Confidence 467899999976 88899 69999999997773 9999999999999999999999999999987654
No 83
>KOG1828|consensus
Probab=99.27 E-value=8e-13 Score=117.45 Aligned_cols=137 Identities=19% Similarity=0.180 Sum_probs=119.7
Q ss_pred CccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHH
Q psy1225 11 GNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 90 (256)
Q Consensus 11 ~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~~f~ 90 (256)
+.+-.-|.-|+-....|+|.++|+.|||+.|++.|+..+.|.++.+|..|.+++..||..||.....++..|+.|..+..
T Consensus 34 Kdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 34 KDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRL 113 (418)
T ss_pred cChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhc
Confidence 33445566666667789999999999999999999999999999999999999999999999999999999998876544
Q ss_pred HHHhcc--------------------------------------------------------------------------
Q psy1225 91 RKVQEN-------------------------------------------------------------------------- 96 (256)
Q Consensus 91 ~~~~kl-------------------------------------------------------------------------- 96 (256)
....+-
T Consensus 114 ~~~qe~~l~f~~~slg~y~~~rn~~~~v~~la~~~~sr~~~~d~~a~~s~ee~~l~v~~~e~~~~~~~~fs~k~~e~~~e 193 (418)
T KOG1828|consen 114 GMTQERLLSFVNTSLGFYEDKRNKVTPVLYLAYGPYSRYHYDDTFANISKEESDLIVSTYEEDSDLPSDFSHKFLETCQE 193 (418)
T ss_pred chhhHHHHHhhhcccchhhhcccccCceeeeccCCccchhhhhhcCCCcccccccccccccccccccccccccccccCcc
Confidence 332211
Q ss_pred ------------------------------------------------------cccHHHHHHHhhcCCCCCHHHHHHHH
Q psy1225 97 ------------------------------------------------------PRSLLTIGKTLKSGHYSTLNELTGEL 122 (256)
Q Consensus 97 ------------------------------------------------------P~dl~~I~~kl~~~~Y~s~~~f~~D~ 122 (256)
|++.+|.+.+..++.|.| -+|..|.
T Consensus 194 ~~~~lgds~g~lqtg~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~ 272 (418)
T KOG1828|consen 194 RVVTLGDSVGDLQTGGQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDR 272 (418)
T ss_pred ceEehhhhhhhhccccHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhccc
Confidence 678889999999999999 8999999
Q ss_pred HHHHHhhhhhCCCCCHHHHHHHHHHH
Q psy1225 123 NLMFENAKKFNPADSRLYRDAVKLQK 148 (256)
Q Consensus 123 ~lmf~Na~~yN~~~s~i~~~a~~L~~ 148 (256)
.+|+.||.+||++....|+.|..+..
T Consensus 273 kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 273 KLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred chhhHHHHhcCCcchHHHHHHHhhhh
Confidence 99999999999999999999887665
No 84
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.24 E-value=2.5e-11 Score=111.34 Aligned_cols=66 Identities=42% Similarity=0.700 Sum_probs=62.0
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCChhhh
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFSLNEL 162 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~~~~~ 162 (256)
||+|.+|+++|++++|.++++|..|+.|||+||+.||+++|.+|.+|..|++.+...++.+.....
T Consensus 188 Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~ 253 (371)
T COG5076 188 PMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEML 253 (371)
T ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccch
Confidence 999999999999999999999999999999999999999999999999999999999987544443
No 85
>KOG0386|consensus
Probab=99.23 E-value=8.1e-12 Score=122.25 Aligned_cols=90 Identities=41% Similarity=0.723 Sum_probs=86.4
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..|+++++.|..+|+++.+||||.+|+.|+++..|.+++.++.|.+..+...|+.++|.||+.||..+|.+|.+|..|+
T Consensus 1041 ~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~ 1120 (1157)
T KOG0386|consen 1041 DSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQ 1120 (1157)
T ss_pred cccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHH
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
.++.....++
T Consensus 1121 ~~~~~~~~~~ 1130 (1157)
T KOG0386|consen 1121 SVFKSARQEI 1130 (1157)
T ss_pred HHHhhhHHHH
Confidence 9998877766
No 86
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.18 E-value=2.2e-13 Score=105.60 Aligned_cols=79 Identities=4% Similarity=-0.041 Sum_probs=65.6
Q ss_pred hcCCccccccccHHH-----HHHHHHHHHHHhcCCCC-ccceeecccceeEe-------EEeecCcccccccCCCCCCce
Q psy1225 175 KFNPADLRLYRDAVK-----LQKLMQRKVQEVMILDI-ECQVYLISDELTHY-------QVVLTGTAEQVRLSGLPDGDW 241 (256)
Q Consensus 175 ~yn~~~~~i~~~a~~-----l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-------ev~kt~~~~~~~~~~i~~~~~ 241 (256)
.|+.+|++..+.+.. +.+|.+.|.+.+|..++ ++|||||++|.|.. |||+|+++.++|++.|+|+|.
T Consensus 3 ~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~~~~~~~~EvF~S~~~d~~~~~~I~gkc~ 82 (121)
T cd04714 3 IIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGRKPNHGEKELFASDHQDENSVQTIEHKCY 82 (121)
T ss_pred EEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCcccccCCCCceEecCCcccccHHHhCcccE
Confidence 456667776665443 34578888877788888 69999999997652 999999999999999999999
Q ss_pred eeeeecccccCC
Q psy1225 242 LAFTLPVVSGKA 253 (256)
Q Consensus 242 v~f~~~~~~g~~ 253 (256)
|+++..|.++++
T Consensus 83 V~~~~ey~~~~~ 94 (121)
T cd04714 83 VLTFAEYERLAR 94 (121)
T ss_pred EEehhHheeccc
Confidence 999999999885
No 87
>KOG0008|consensus
Probab=99.17 E-value=4.5e-12 Score=126.57 Aligned_cols=130 Identities=28% Similarity=0.380 Sum_probs=113.5
Q ss_pred cccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHH
Q psy1225 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVK 84 (256)
Q Consensus 5 ~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~ 84 (256)
+.....-+-|++|.++++++..|+||.+|++||||.+|.+++....|.+.+||.+|+++|+.|+..||++++.....|+.
T Consensus 1391 vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k 1470 (1563)
T KOG0008|consen 1391 VSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARK 1470 (1563)
T ss_pred HHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHH
Confidence 33456678899999999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHhcc-------------------------------cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhC
Q psy1225 85 LQKLMQRKVQEN-------------------------------PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFN 133 (256)
Q Consensus 85 L~~~f~~~~~kl-------------------------------P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN 133 (256)
+-.+....+.+. |+|+.||..++..-.|.+-.+|..|+..+=.|+-.|-
T Consensus 1471 ~~ev~~~~~~e~~~~~~~le~~is~~~~~a~~~~ea~~~dd~~~~d~~t~~d~~~d~e~~~~~~~~~~~~q~~~n~~~~~ 1550 (1563)
T KOG0008|consen 1471 IGEVGLANLLEYIEHLLQLEENISTLFEAAVEKAEAPDYDDIVPGDLSTIPDDVRDTEYSDSMQRDADVWQIKSNAHVYD 1550 (1563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCCccccCCCCCCCCcchhhccccchhhhcccceeeecccccccc
Confidence 666544433222 8999999999999999999999999999888887773
Q ss_pred C
Q psy1225 134 P 134 (256)
Q Consensus 134 ~ 134 (256)
+
T Consensus 1551 g 1551 (1563)
T KOG0008|consen 1551 G 1551 (1563)
T ss_pred C
Confidence 3
No 88
>KOG1827|consensus
Probab=99.17 E-value=4.3e-11 Score=113.53 Aligned_cols=140 Identities=26% Similarity=0.212 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHHhcc----------------------------------------
Q psy1225 57 LTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEN---------------------------------------- 96 (256)
Q Consensus 57 f~~D~~li~~Na~~yN~~~S~i~~~A~~L~~~f~~~~~kl---------------------------------------- 96 (256)
.++|+.+|..|+..||++.+.+++.+..+++...+.....
T Consensus 2 ~~~df~l~~e~~~~~~~p~s~p~k~~~~~~~~~~~~k~~~~~~d~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~fek 81 (629)
T KOG1827|consen 2 VVADFPLMTENACSDNEPDSLPGKDAKNLQKTPLHDKTLMGRDDSPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEK 81 (629)
T ss_pred chhhhhHHhhccccccCCccccccCcchhhhchhhhhcccCCCCccccChHHHHHHHHHHHHHHhhccccCcccchhHhh
Confidence 3679999999999999999999999988877655444111
Q ss_pred ----------------cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHh-cCCh
Q psy1225 97 ----------------PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ-EFSL 159 (256)
Q Consensus 97 ----------------P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~-~~~~ 159 (256)
||+|..|++|++.++|.+.+.|..|+.+|++||+.||.++|.+|+++..|+..|..+.. ..+.
T Consensus 82 lp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~ 161 (629)
T KOG1827|consen 82 LPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLEDEKKDG 161 (629)
T ss_pred ccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhhccccch
Confidence 89999999999999999999999999999999999999999999999999999887554 2233
Q ss_pred hhhhchhhhhhccchhcCCccccccccHHHHHHHHHHHHHHhcCCCC-ccceee
Q psy1225 160 NELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDI-ECQVYL 212 (256)
Q Consensus 160 ~~~~~d~~~~~~n~~~yn~~~~~i~~~a~~l~~i~~~~~~~~g~~~~-~c~y~r 212 (256)
+....+...+-..+-+|++.+- ...+|...+ +||+|.
T Consensus 162 e~s~~~~~~l~~~~l~~~~~~~----------------~~i~~~~~~~gd~vlv 199 (629)
T KOG1827|consen 162 ELSMESNEELKAGGLHYHELGP----------------VEIDGTKYIVGDYVLV 199 (629)
T ss_pred hhccccccccccCCCCcccCCC----------------ccccCcccccCceeee
Confidence 4333343333333344444332 233477777 699987
No 89
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.09 E-value=1.1e-10 Score=88.69 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=39.3
Q ss_pred CcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q psy1225 35 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD 75 (256)
Q Consensus 35 ~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~ 75 (256)
.||||+||++||.+|.|.++++|++|+++||.||+.||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 68999999999999999999999999999999999999863
No 90
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.07 E-value=3.3e-12 Score=103.07 Aligned_cols=85 Identities=11% Similarity=0.011 Sum_probs=69.3
Q ss_pred ccchhcCCccccccccHHH---HHHHHHHHHHHh--cCCCC-ccceeecccceeE---------eEEeec-----Ccccc
Q psy1225 171 ENAKKFNPADLRLYRDAVK---LQKLMQRKVQEV--MILDI-ECQVYLISDELTH---------YQVVLT-----GTAEQ 230 (256)
Q Consensus 171 ~n~~~yn~~~~~i~~~a~~---l~~i~~~~~~~~--g~~~~-~c~y~rpeqt~h~---------~ev~kt-----~~~~~ 230 (256)
.++..|+.+|++.++..+. +.+|.+.|...+ |..++ ++|||||++|.+. .|||+| |++.+
T Consensus 25 ~~g~~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFlS~~~d~~~~~~ 104 (159)
T cd04715 25 YDGVEYRLYDDVYVHNGDSEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVFLACGRGEGLANI 104 (159)
T ss_pred ECCEEEeCCCEEEEeCCCCCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcccCCCcEEEecCcCcccccc
Confidence 3667899999998886542 234788887765 88888 6999999999631 299999 56799
Q ss_pred cccCCCCCCceeeeeecccccCCCC
Q psy1225 231 VRLSGLPDGDWLAFTLPVVSGKASS 255 (256)
Q Consensus 231 ~~~~~i~~~~~v~f~~~~~~g~~~~ 255 (256)
+|++.|+|+|.|++++.|+|.-|-|
T Consensus 105 n~l~sI~gKC~Vl~~~ey~~~~~~s 129 (159)
T cd04715 105 NLLESIIGKCNVVCISEDFRNPQPS 129 (159)
T ss_pred CcHHHccceeEEEEehHhhhCCCCc
Confidence 9999999999999999999988764
No 91
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.00 E-value=3.9e-10 Score=85.63 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=38.8
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD 136 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~ 136 (256)
||||+||++||.+|.|.++++|..|++|||+||+.||.++
T Consensus 64 ~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 64 NMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999774
No 92
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.91 E-value=2.6e-10 Score=87.29 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=51.6
Q ss_pred cccccCCccccccccCCCC--CCCcchhhhcCCcCcHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHHhhhCC
Q psy1225 5 KNQTEGGNLSEPFLKLPAK--RYNPDYYRIIKNPRSLLTIGKTLKSGHY-------STLNELTGELNLMFENAKKFNP 73 (256)
Q Consensus 5 ~~~~~~~~~s~~F~~~p~~--~~~pdYy~~I~~PmdL~tI~~kl~~~~Y-------~~~~ef~~D~~li~~Na~~yN~ 73 (256)
+.....++.++||..||+. ...||||++|++||||+||+++|.++.+ ..-....++...+..|+-.+|.
T Consensus 12 l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (114)
T cd05494 12 LKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPSNI 89 (114)
T ss_pred HHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCcccc
Confidence 4445567899999999998 8899999999999999999999998744 3333444455555555554444
No 93
>KOG0955|consensus
Probab=98.83 E-value=3.1e-09 Score=106.53 Aligned_cols=94 Identities=29% Similarity=0.493 Sum_probs=85.3
Q ss_pred cccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHH
Q psy1225 3 PQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDA 82 (256)
Q Consensus 3 ~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A 82 (256)
..+....-......|..|++...+|||.++|++|||+.+++.++.+|.|+++++|..|+.+|+.||..||..+...+++|
T Consensus 572 ~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~a 651 (1051)
T KOG0955|consen 572 KSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAA 651 (1051)
T ss_pred HHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhh
Confidence 34455556667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q psy1225 83 VKLQKLMQRKVQEN 96 (256)
Q Consensus 83 ~~L~~~f~~~~~kl 96 (256)
..+++.....+.+.
T Consensus 652 v~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 652 VRLRELIKKDFRNA 665 (1051)
T ss_pred HHHHhhhhhHHHhc
Confidence 99999887776555
No 94
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=98.77 E-value=1.8e-10 Score=88.53 Aligned_cols=79 Identities=6% Similarity=0.001 Sum_probs=63.8
Q ss_pred hhcCCccccccccHHH-------HHHHHHHHHHHhcCCCC-ccceeecccceeE-------eEEeecCcccccccCCCCC
Q psy1225 174 KKFNPADLRLYRDAVK-------LQKLMQRKVQEVMILDI-ECQVYLISDELTH-------YQVVLTGTAEQVRLSGLPD 238 (256)
Q Consensus 174 ~~yn~~~~~i~~~a~~-------l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~-------~ev~kt~~~~~~~~~~i~~ 238 (256)
..|+.++++.....+. +.+|.+.|....|..++ ++|||||++|.|. .|||.|....++|++.|.|
T Consensus 2 ~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~v~~I~g 81 (123)
T cd04370 2 ITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLSPFALRRELFLSDHLDEIPVESIIG 81 (123)
T ss_pred CEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhccccccccccceeEEecCccccCHHHhcc
Confidence 4566666666554443 34577777777788888 6899999999764 3999999999999999999
Q ss_pred CceeeeeecccccC
Q psy1225 239 GDWLAFTLPVVSGK 252 (256)
Q Consensus 239 ~~~v~f~~~~~~g~ 252 (256)
+|-|++...+..++
T Consensus 82 kc~V~~~~~~~~~~ 95 (123)
T cd04370 82 KCKVLFVSEFEGLK 95 (123)
T ss_pred ccEEEechHhhccc
Confidence 99999999998875
No 95
>smart00439 BAH Bromo adjacent homology domain.
Probab=98.60 E-value=9e-10 Score=84.59 Aligned_cols=65 Identities=9% Similarity=-0.021 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcC-CCC-ccceeecccceeE-------eEEeecCcccccccCCCCCCceeeeeecccccCCC
Q psy1225 190 LQKLMQRKVQEVMI-LDI-ECQVYLISDELTH-------YQVVLTGTAEQVRLSGLPDGDWLAFTLPVVSGKAS 254 (256)
Q Consensus 190 l~~i~~~~~~~~g~-~~~-~c~y~rpeqt~h~-------~ev~kt~~~~~~~~~~i~~~~~v~f~~~~~~g~~~ 254 (256)
+.+|.+.|....|. .++ ++|||||++|.|. .|||.|....+.+++.|+|+|.|++...|..+++.
T Consensus 21 i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~~~~I~~kc~V~~~~~~~~~~~~ 94 (120)
T smart00439 21 IGRIEEIFETKKNSEKMVRVRWFYRPEETVLEKAALFDKNEVFLSDEYDTVPLSDIIGKCNVLSKSDYPGLRPE 94 (120)
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEChhhccccccccCCCcceEEEccCccCChHHeeeEEEEEEcchhcccccc
Confidence 34566677777777 688 6899999999654 29999999999999999999999999999887764
No 96
>KOG1245|consensus
Probab=98.53 E-value=2e-07 Score=97.00 Aligned_cols=58 Identities=26% Similarity=0.537 Sum_probs=56.4
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~ 155 (256)
||||+||+.|+..|.|.+.++|..|+.|||.||..||+. |.+++.+..|.++|+.+++
T Consensus 1341 Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ag~~l~~ff~~~~~ 1398 (1404)
T KOG1245|consen 1341 PMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGRAGTCLRRFFHKRWR 1398 (1404)
T ss_pred hhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhhhcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999998765
No 97
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.33 E-value=7.3e-09 Score=82.80 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=61.4
Q ss_pred cchhcCCccccccccHHH----HHHHHHHHHHHhcCCCC-ccceeecccceeE----------eEEeecCcccccccCCC
Q psy1225 172 NAKKFNPADLRLYRDAVK----LQKLMQRKVQEVMILDI-ECQVYLISDELTH----------YQVVLTGTAEQVRLSGL 236 (256)
Q Consensus 172 n~~~yn~~~~~i~~~a~~----l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~----------~ev~kt~~~~~~~~~~i 236 (256)
++..|+.++.+....+.. +.+|.+.|...+|...+ ++|||||+++.+. .|||.|.+.-+.|++.|
T Consensus 17 dg~~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S~~~d~~~~~~I 96 (146)
T cd04713 17 DGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYSFHRDEVPAESV 96 (146)
T ss_pred CCEEEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEEeCCCCcCCHHHC
Confidence 556788888887664332 23466667666677788 6899999999532 39999999999999999
Q ss_pred CCCceeeeeeccc
Q psy1225 237 PDGDWLAFTLPVV 249 (256)
Q Consensus 237 ~~~~~v~f~~~~~ 249 (256)
+|+|.|+++..+.
T Consensus 97 ~gkc~V~~~~~~~ 109 (146)
T cd04713 97 LHPCKVAFVPKGK 109 (146)
T ss_pred cceeEEEECCccc
Confidence 9999999988776
No 98
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.31 E-value=1.5e-07 Score=73.69 Aligned_cols=60 Identities=12% Similarity=-0.032 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCCC-ccceeecccceeEe-----EEeecCcccccccC----CCCCCceeeeeeccc
Q psy1225 190 LQKLMQRKVQEVMILDI-ECQVYLISDELTHY-----QVVLTGTAEQVRLS----GLPDGDWLAFTLPVV 249 (256)
Q Consensus 190 l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-----ev~kt~~~~~~~~~----~i~~~~~v~f~~~~~ 249 (256)
+++|...|...+|.+.+ ..|||||++|++.. |||+|.++.+.+++ +|+++|.|.|+.++-
T Consensus 35 i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~~~~~~ElFLSd~c~~~~~~~~~~~I~~k~~V~~~~~~~ 104 (130)
T cd04712 35 VQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGNYANERELFLTNECTCLELDLLSTEIKGVHKVDWSGTPW 104 (130)
T ss_pred EEEEEEeeecCCCceEEEEEEEEcchhccccccCCCceEEEeccccccccccccceeEEEEEEEEecCcC
Confidence 34567778888898888 68999999998885 99999999999999 999999999987764
No 99
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.28 E-value=1.7e-08 Score=78.06 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCCC-ccceeecccceeE--------eEEeecCcccccccCCCCCCceeeeeeccccc
Q psy1225 190 LQKLMQRKVQEVMILDI-ECQVYLISDELTH--------YQVVLTGTAEQVRLSGLPDGDWLAFTLPVVSG 251 (256)
Q Consensus 190 l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~--------~ev~kt~~~~~~~~~~i~~~~~v~f~~~~~~g 251 (256)
+.+|.+.|...+|..++ +-||||||+|++- -|||.|....+-|++-|++||.|+.+..+..-
T Consensus 22 i~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~Kc~V~~~~~~~~~ 92 (122)
T cd04716 22 ICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISKVKILQVPPNVGT 92 (122)
T ss_pred EEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheeeeeEEEEeCCCCCc
Confidence 44577778777888888 5699999998543 19999999999999999999999998877654
No 100
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.27 E-value=1.9e-07 Score=72.12 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCCC-ccceeecccceeEe-----EEeecCcccccccCCCCCCceeeeee
Q psy1225 190 LQKLMQRKVQEVMILDI-ECQVYLISDELTHY-----QVVLTGTAEQVRLSGLPDGDWLAFTL 246 (256)
Q Consensus 190 l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-----ev~kt~~~~~~~~~~i~~~~~v~f~~ 246 (256)
+.+|-..|.+.+|.+.+ +||||||++||... |||+|..+.+.++++|.++|.|.+-.
T Consensus 23 I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~~~~~kEvFlsd~c~d~~l~~I~~Kv~V~~~~ 85 (124)
T cd04760 23 IARVTYMWKDSIGGKMFHAHWFCRGSDTVLGETSDPLELFLVDECEDMALSSIHGKVNVIYKA 85 (124)
T ss_pred EEEEhhheecCCCCcEEEEEEEEECCcccccccCCCcEEEeecccCCcchHHheeeeEEEEeC
Confidence 34577888888899888 79999999998775 99999999999999999999998754
No 101
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=98.22 E-value=3.4e-09 Score=81.30 Aligned_cols=62 Identities=5% Similarity=-0.071 Sum_probs=49.9
Q ss_pred HHHHHHHHhcC--CCC-ccceeecccceeE-----eEEeecCcccccccCCCCCCceeeeeecccccCCC
Q psy1225 193 LMQRKVQEVMI--LDI-ECQVYLISDELTH-----YQVVLTGTAEQVRLSGLPDGDWLAFTLPVVSGKAS 254 (256)
Q Consensus 193 i~~~~~~~~g~--~~~-~c~y~rpeqt~h~-----~ev~kt~~~~~~~~~~i~~~~~v~f~~~~~~g~~~ 254 (256)
|.+.|....+. .++ .+|||||++|.+. .|||.|.+..++|++.|.|+|.|++...|..+++.
T Consensus 25 I~~i~~~~~~~~~~~~~v~Wf~rp~d~~~~~~~~~~Elf~s~~~~~~~~~~I~gkc~V~~~~~~~~~~~~ 94 (119)
T PF01426_consen 25 IEEIWEDKDGNKEKMVKVRWFYRPEDTSLGKTFSPRELFLSDHCDDIPVESIRGKCNVLHLEDYEQARPY 94 (119)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEEGGGSTTGGHSCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTGCCH
T ss_pred EEEEEcCCCCCEEEEEEEEEeECcccccccccCCCCEEEEECcEeEEehhhEEeeeEEEECCcccccccc
Confidence 44445555555 577 6899999999222 39999999999999999999999999999887753
No 102
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.91 E-value=1e-06 Score=69.01 Aligned_cols=82 Identities=4% Similarity=-0.135 Sum_probs=61.2
Q ss_pred cchhcCCccccccccHH---HHHHHHHHHHHHhcCCCC-ccceeecccceeE--------eEEeecCcccccccCCCCCC
Q psy1225 172 NAKKFNPADLRLYRDAV---KLQKLMQRKVQEVMILDI-ECQVYLISDELTH--------YQVVLTGTAEQVRLSGLPDG 239 (256)
Q Consensus 172 n~~~yn~~~~~i~~~a~---~l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~--------~ev~kt~~~~~~~~~~i~~~ 239 (256)
|+..++.++.+..+.+. -+.+|-+.|.+.+|..++ ++||+||++|.|. .|||+|-++.+.|++.|+|+
T Consensus 4 ~~~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~I~gk 83 (130)
T cd04721 4 NGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECIDGL 83 (130)
T ss_pred CCEEEECCCEEEEeCCCCCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHHeeee
Confidence 34445555555444221 133466678777888888 5899999998662 29999999999999999999
Q ss_pred ceeeeeecccccCC
Q psy1225 240 DWLAFTLPVVSGKA 253 (256)
Q Consensus 240 ~~v~f~~~~~~g~~ 253 (256)
|.||..-.|..-.+
T Consensus 84 ~~Vls~~~y~k~~~ 97 (130)
T cd04721 84 ATVLTREHYEKFQS 97 (130)
T ss_pred eEECCHHHHhhhhc
Confidence 99999877776553
No 103
>KOG1828|consensus
Probab=97.64 E-value=2.5e-05 Score=70.22 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=68.0
Q ss_pred CCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHH
Q psy1225 10 GGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87 (256)
Q Consensus 10 ~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~ 87 (256)
.......|..+|-....|.|..+|++|++.+|.+.|..++.|.| -+|..|+.+|+.||.+||+++...|..|+.+..
T Consensus 222 ~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 222 RVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred ccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 33445566677777788999999999999999999999999999 999999999999999999999998888887655
No 104
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.55 E-value=1e-05 Score=65.66 Aligned_cols=57 Identities=7% Similarity=0.012 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCC-ccceeecccce--------------------------eEe---EEeecCcccccccCCCCCCce
Q psy1225 192 KLMQRKVQEVMILDI-ECQVYLISDEL--------------------------THY---QVVLTGTAEQVRLSGLPDGDW 241 (256)
Q Consensus 192 ~i~~~~~~~~g~~~~-~c~y~rpeqt~--------------------------h~~---ev~kt~~~~~~~~~~i~~~~~ 241 (256)
+|.+.|....|..++ ++|||||+++. |.+ |||+|.++...|++-|.|||-
T Consensus 24 rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~rELF~S~~~d~~p~~~IrGKC~ 103 (164)
T cd04709 24 RIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLRHRELFLSRQVETLPATHIRGKCS 103 (164)
T ss_pred EEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccCcceeEEecccccccHHHeeeeEE
Confidence 455556666777777 57999999852 112 999999999999999999999
Q ss_pred eeeeecc
Q psy1225 242 LAFTLPV 248 (256)
Q Consensus 242 v~f~~~~ 248 (256)
|+++.-|
T Consensus 104 V~~~~d~ 110 (164)
T cd04709 104 VTLLNDT 110 (164)
T ss_pred EEEehhh
Confidence 9988755
No 105
>KOG0386|consensus
Probab=97.50 E-value=8.2e-05 Score=74.16 Aligned_cols=62 Identities=35% Similarity=0.622 Sum_probs=59.0
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFS 158 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~ 158 (256)
|+++..|++++.++.|.+..+...|+.++|.||+.||+++|.+|.+|..|++++.....+++
T Consensus 1070 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1070 PVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred hhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHHhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988777653
No 106
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.11 E-value=0.00018 Score=60.06 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=37.2
Q ss_pred cceeecccceeE-------eEEeecCcccccccCCCCCCceeeeeeccccc
Q psy1225 208 CQVYLISDELTH-------YQVVLTGTAEQVRLSGLPDGDWLAFTLPVVSG 251 (256)
Q Consensus 208 c~y~rpeqt~h~-------~ev~kt~~~~~~~~~~i~~~~~v~f~~~~~~g 251 (256)
=||||||+|+-. .||+-|+.+.+.|++-|.|+|.|.+..-+..-
T Consensus 69 rwFYRPEdt~~~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~ 119 (202)
T cd04708 69 RRFYRPEDVSPEKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDS 119 (202)
T ss_pred EEEechhhcCcccceecCceeEEEeccceeechhHcceEEEEEecCcchhh
Confidence 499999999332 19999999999999999999999988766443
No 107
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.01 E-value=8.1e-05 Score=58.02 Aligned_cols=75 Identities=8% Similarity=-0.039 Sum_probs=52.0
Q ss_pred cCCccccccccHH----HHHHHHHHHHHHhcCCCC----ccceeecccce--------eEe---EEeecCccc---cccc
Q psy1225 176 FNPADLRLYRDAV----KLQKLMQRKVQEVMILDI----ECQVYLISDEL--------THY---QVVLTGTAE---QVRL 233 (256)
Q Consensus 176 yn~~~~~i~~~a~----~l~~i~~~~~~~~g~~~~----~c~y~rpeqt~--------h~~---ev~kt~~~~---~~~~ 233 (256)
+..++.++.+.++ -+++|.+.+....|.+.. +=|||||++-- .+. |||+|.++. +..+
T Consensus 4 i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i~~ 83 (128)
T cd04719 4 IEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDIDA 83 (128)
T ss_pred EecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcEeH
Confidence 4445555555444 356677777665552222 24999999441 222 999999986 9999
Q ss_pred CCCCCCceeeeeecccc
Q psy1225 234 SGLPDGDWLAFTLPVVS 250 (256)
Q Consensus 234 ~~i~~~~~v~f~~~~~~ 250 (256)
+-|+|+|.|+.+..|..
T Consensus 84 etI~gkc~V~~~~~y~~ 100 (128)
T cd04719 84 ETIIGKVRVEPVEPKTD 100 (128)
T ss_pred HHcccEEEEEEcCCccc
Confidence 99999999999988864
No 108
>KOG0955|consensus
Probab=96.98 E-value=0.00075 Score=68.65 Aligned_cols=59 Identities=34% Similarity=0.660 Sum_probs=55.6
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~ 155 (256)
|||+.+++.++.++.|.++++|..|+.+|..||..||..+.-.|+.|..+++.....+.
T Consensus 605 pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~ 663 (1051)
T KOG0955|consen 605 PMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFR 663 (1051)
T ss_pred ccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999987766554
No 109
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.60 E-value=0.0011 Score=51.84 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=32.4
Q ss_pred ccceeeccccee-------E--eEEeecCcccccccCCCCCCceee
Q psy1225 207 ECQVYLISDELT-------H--YQVVLTGTAEQVRLSGLPDGDWLA 243 (256)
Q Consensus 207 ~c~y~rpeqt~h-------~--~ev~kt~~~~~~~~~~i~~~~~v~ 243 (256)
+-||||||+|-- . .||+-|.+....|++.|-|||-|.
T Consensus 54 V~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~ 99 (137)
T cd04711 54 INKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVE 99 (137)
T ss_pred EEEEecccccccccccccccceeeEEeecceeecChhhccceEEEE
Confidence 369999998822 2 299999999999999999999998
No 110
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.44 E-value=0.00066 Score=53.47 Aligned_cols=78 Identities=6% Similarity=-0.039 Sum_probs=51.4
Q ss_pred hccchhcCCcccccccc--HH---HHHHHHHHHHHHhcC----------CC--C-ccceeecccceeEe-----EEeecC
Q psy1225 170 FENAKKFNPADLRLYRD--AV---KLQKLMQRKVQEVMI----------LD--I-ECQVYLISDELTHY-----QVVLTG 226 (256)
Q Consensus 170 ~~n~~~yn~~~~~i~~~--a~---~l~~i~~~~~~~~g~----------~~--~-~c~y~rpeqt~h~~-----ev~kt~ 226 (256)
..++..|+.+|.+.... +. -+.+|...+...++. .. + ..|||||+++..+. |||.|.
T Consensus 6 ~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~~~d~relf~S~ 85 (135)
T cd04710 6 LKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRVVADSRLLYASM 85 (135)
T ss_pred ccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcccCCceEEEEEe
Confidence 34566666666654332 21 123444444433332 12 3 36999999983332 999999
Q ss_pred cccccccCCCCCCceeeeeec
Q psy1225 227 TAEQVRLSGLPDGDWLAFTLP 247 (256)
Q Consensus 227 ~~~~~~~~~i~~~~~v~f~~~ 247 (256)
+....|++-|.|||-|.+..-
T Consensus 86 h~d~~p~~si~gKC~V~~~~d 106 (135)
T cd04710 86 HSDICPIGSVRGKCTVRHRDQ 106 (135)
T ss_pred eEeeechHHEEeEEEEEEecc
Confidence 999999999999999988753
No 111
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.24 E-value=0.011 Score=46.00 Aligned_cols=45 Identities=18% Similarity=0.436 Sum_probs=37.6
Q ss_pred cCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHH
Q psy1225 36 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYR 80 (256)
Q Consensus 36 PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~ 80 (256)
|.||.-|++|+..|.|+++.+|-.|+-.|+.-+..-.+....+-+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~k 103 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKK 103 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccC
Confidence 899999999999999999999999999999887765444343333
No 112
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.47 E-value=0.026 Score=43.95 Aligned_cols=60 Identities=13% Similarity=0.345 Sum_probs=45.7
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
|.||..+++|+..|.|.|+.+|.+|+-.|+..+..-.+...++-+.....+.+|-+++.+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 899999999999999999999999999999887655554444444444455556665553
No 113
>KOG0644|consensus
Probab=91.93 E-value=0.17 Score=50.41 Aligned_cols=62 Identities=21% Similarity=0.285 Sum_probs=51.5
Q ss_pred hcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHH
Q psy1225 32 IIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 93 (256)
Q Consensus 32 ~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~~f~~~~ 93 (256)
--.-|.+|+.|+.+|++..|++.+.|..|+..|..||.+|.+.+..+...+..|...|...+
T Consensus 1049 ~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1049 RFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 35678999999999999999999999999999999999999887766666666666555443
No 114
>KOG1886|consensus
Probab=89.37 E-value=0.15 Score=47.69 Aligned_cols=59 Identities=10% Similarity=-0.048 Sum_probs=45.3
Q ss_pred HHHHHHHHhc-CCCCc-cceeecccceeEe----------EEeecCcccccccCCCCCCceeeeeeccccc
Q psy1225 193 LMQRKVQEVM-ILDIE-CQVYLISDELTHY----------QVVLTGTAEQVRLSGLPDGDWLAFTLPVVSG 251 (256)
Q Consensus 193 i~~~~~~~~g-~~~~~-c~y~rpeqt~h~~----------ev~kt~~~~~~~~~~i~~~~~v~f~~~~~~g 251 (256)
|...+..+.| ..-+. -|+||||++.-.- |.|-+-+....+++-|.++|-|.||..|++=
T Consensus 73 i~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kql 143 (464)
T KOG1886|consen 73 IEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQL 143 (464)
T ss_pred EeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeeccccccc
Confidence 4444555554 33444 5999999884431 8999999999999999999999999998763
No 115
>KOG0644|consensus
Probab=89.37 E-value=0.26 Score=49.14 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=47.0
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHH
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~ 152 (256)
|.+++.|+.+|++..|.+.+.|-.|+..|.+||..|.+-+-.+-..+..|...|..
T Consensus 1053 pls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1053 PLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred cccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 88899999999999999999999999999999999998776555555555554443
No 116
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=89.27 E-value=0.12 Score=42.78 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=48.6
Q ss_pred cchhcCCccccccccHHH----HHHHHHHHHHHhcC-CCCc-cceeecccc--------ee--------EeEEeecCccc
Q psy1225 172 NAKKFNPADLRLYRDAVK----LQKLMQRKVQEVMI-LDIE-CQVYLISDE--------LT--------HYQVVLTGTAE 229 (256)
Q Consensus 172 n~~~yn~~~~~i~~~a~~----l~~i~~~~~~~~g~-~~~~-c~y~rpeqt--------~h--------~~ev~kt~~~~ 229 (256)
.+..++.+++++++++.. +..|-..+....+. .-+. -|||||.+= .| -.|+|.|-++.
T Consensus 49 d~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~~d 128 (179)
T cd04720 49 DGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAELS 128 (179)
T ss_pred CCeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEecccc
Confidence 446688888888877643 11122222111112 2333 499997722 33 25999999999
Q ss_pred ccccCCCCCCceeeeee
Q psy1225 230 QVRLSGLPDGDWLAFTL 246 (256)
Q Consensus 230 ~~~~~~i~~~~~v~f~~ 246 (256)
..++.+|+++|-|+-+.
T Consensus 129 ~i~l~~Ii~k~~Vls~~ 145 (179)
T cd04720 129 EIKLKDIIDKANVLSES 145 (179)
T ss_pred eEEhhheeeeEEEecHH
Confidence 99999999999997433
No 117
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=81.01 E-value=0.23 Score=37.93 Aligned_cols=42 Identities=10% Similarity=-0.156 Sum_probs=29.0
Q ss_pred hcccccHHHHHHHhhcCC-------CCCHHHHHHHHHHHHHhhhhhCCC
Q psy1225 94 QENPRSLLTIGKTLKSGH-------YSTLNELTGELNLMFENAKKFNPA 135 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~~~-------Y~s~~~f~~D~~lmf~Na~~yN~~ 135 (256)
.+-||||+||++++.++. |..-....++...+..||-.+|..
T Consensus 42 IK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (114)
T cd05494 42 IKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPSNIY 90 (114)
T ss_pred cCCCCChHHHHHHHHccccccccccccccccccccccccccccCccccc
Confidence 334999999999999863 333444556666667776666653
No 118
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=70.19 E-value=7.6 Score=26.72 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1225 40 LTIGKTLKSGHYSTLNELTGELNLMFEN 67 (256)
Q Consensus 40 ~tI~~kl~~~~Y~~~~ef~~D~~li~~N 67 (256)
.-|+..+.+|.|.|.+|++++.-+++.-
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 3588999999999999999999877654
No 119
>KOG0732|consensus
Probab=68.43 E-value=1.9 Score=44.65 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=53.1
Q ss_pred ccccccCCCCCC-----CcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHHhhhCCCC
Q psy1225 14 SEPFLKLPAKRY-----NPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTG--ELNLMFENAKKFNPAD 75 (256)
Q Consensus 14 s~~F~~~p~~~~-----~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~--D~~li~~Na~~yN~~~ 75 (256)
+..|.+|++... .++|-.+|+.||++...-.++....|.++.+|.. ++.|||.|+..+|+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 445555544321 5699999999999999999999999999999999 9999999999999865
No 120
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=65.05 E-value=11 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy1225 101 LTIGKTLKSGHYSTLNELTGELNLMFE 127 (256)
Q Consensus 101 ~~I~~kl~~~~Y~s~~~f~~D~~lmf~ 127 (256)
.-|+..+++|.|.|.++++.+.-+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 358899999999999999999877764
No 121
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=60.49 E-value=13 Score=26.38 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1225 41 TIGKTLKSGHYSTLNELTGELNLMFE 66 (256)
Q Consensus 41 tI~~kl~~~~Y~~~~ef~~D~~li~~ 66 (256)
-|+.++.+|.|.|.+|++.|.-.++.
T Consensus 16 ~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 16 FIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999877665
No 122
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=48.32 E-value=27 Score=24.76 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy1225 102 TIGKTLKSGHYSTLNELTGELNLMFE 127 (256)
Q Consensus 102 ~I~~kl~~~~Y~s~~~f~~D~~lmf~ 127 (256)
-|+.++.+|.|.|.+|++.|.-.++.
T Consensus 16 ~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 16 FIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 48899999999999999988665553
No 123
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=29.14 E-value=23 Score=23.54 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=8.1
Q ss_pred eecCcccccc
Q psy1225 223 VLTGTAEQVR 232 (256)
Q Consensus 223 ~kt~~~~~~~ 232 (256)
+|+|||.|..
T Consensus 26 vksgQyDDl~ 35 (58)
T COG3197 26 VKSGQYDDLD 35 (58)
T ss_pred cccCCccccc
Confidence 6899998863
No 124
>PF08339 RTX_C: RTX C-terminal domain; InterPro: IPR013550 This domain describes the C-terminal region of various bacterial haemolysins and leukotoxins, which belong to the RTX family of toxins. These are produced by various Gram negative bacteria, such as Escherichia coli (P09983 from SWISSPROT) and Actinobacillus pleuropneumoniae (P15377 from SWISSPROT). RTX toxins may interact with lipopolysaccharide (LPS) to functionally impair and eventually kill leukocytes []. This region is found in association with the RTX N-terminal domain (IPR003995 from INTERPRO) and multiple hemolysin-type calcium-binding repeats (IPR001343 from INTERPRO).
Probab=29.07 E-value=11 Score=29.91 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=17.0
Q ss_pred EEeecCcc--cccccCCCCCCce
Q psy1225 221 QVVLTGTA--EQVRLSGLPDGDW 241 (256)
Q Consensus 221 ev~kt~~~--~~~~~~~i~~~~~ 241 (256)
.=||+|+. .||.||.|||+--
T Consensus 36 nWFk~~~~~~~n~KIEqIidKnG 58 (145)
T PF08339_consen 36 NWFKEDNSGNYNHKIEQIIDKNG 58 (145)
T ss_pred hhhhccccccchhhHHHHhcCCC
Confidence 33677777 8999999999865
No 125
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=27.95 E-value=2.4e+02 Score=20.54 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=39.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 109 SGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 109 ~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
...|.|..-|...+..|-.....++..+..+-..|..+++.|.+-|++.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887777777777667888889999999999988754
No 126
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=26.97 E-value=4.4e+02 Score=24.89 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=53.2
Q ss_pred ccHHHHHHHhhcCC----CCCH-HHHH-HHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCC-hhhhhchhhh--
Q psy1225 98 RSLLTIGKTLKSGH----YSTL-NELT-GELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFS-LNELTGELSL-- 168 (256)
Q Consensus 98 ~dl~~I~~kl~~~~----Y~s~-~~f~-~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~-~~~~~~d~~~-- 168 (256)
+.+.+++.-+.... -.+. ..++ ..+..+..|-..-.-.+.++..+-..|.+..++.++++| .|....+...
T Consensus 248 v~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~ 327 (429)
T cd00256 248 IVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGR 327 (429)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCC
Confidence 45666666665432 1111 1222 255556666654444677899999999999999998885 4444333211
Q ss_pred -h-----------hccchhcCCccccccc
Q psy1225 169 -M-----------FENAKKFNPADLRLYR 185 (256)
Q Consensus 169 -~-----------~~n~~~yn~~~~~i~~ 185 (256)
- -+|+.++++.++++.+
T Consensus 328 L~WSp~H~se~FW~EN~~kf~~~~~~llk 356 (429)
T cd00256 328 LHWSPVHKSEKFWRENADRLNEKNYELLK 356 (429)
T ss_pred ccCCCCCCCchHHHHHHHHHHhcchHHHH
Confidence 1 1477778777776654
No 127
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=26.45 E-value=24 Score=22.18 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=7.0
Q ss_pred eecCccccc
Q psy1225 223 VLTGTAEQV 231 (256)
Q Consensus 223 ~kt~~~~~~ 231 (256)
+|+|||.|.
T Consensus 25 vk~GQfdD~ 33 (45)
T PF03597_consen 25 VKSGQFDDL 33 (45)
T ss_pred HccCCCCCC
Confidence 588888875
No 128
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=24.34 E-value=2.9e+02 Score=20.15 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=40.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHHhcc
Q psy1225 48 SGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEN 96 (256)
Q Consensus 48 ~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~~f~~~~~kl 96 (256)
...|.|..-|...+..|-.....++..+..+...|..+++.|.+.+.+.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888888888877777777777777888899999999999998876
No 129
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=22.12 E-value=33 Score=22.18 Aligned_cols=9 Identities=11% Similarity=0.409 Sum_probs=7.1
Q ss_pred eecCccccc
Q psy1225 223 VLTGTAEQV 231 (256)
Q Consensus 223 ~kt~~~~~~ 231 (256)
+|+|||.|.
T Consensus 26 vk~GQfDDl 34 (51)
T TIGR00847 26 LKSGQYDDL 34 (51)
T ss_pred HccCCCCCC
Confidence 578888875
No 130
>KOG1632|consensus
Probab=21.89 E-value=12 Score=34.27 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=44.1
Q ss_pred cCCccccccccC----CCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHH
Q psy1225 9 EGGNLSEPFLKL----PAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYR 80 (256)
Q Consensus 9 ~~~~~s~~F~~~----p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~ 80 (256)
..+..+.+|..+ .+-...|+|...+..|+.++.+-++...-.+.-..-|..+...|+.+...++...+.+|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~ 288 (345)
T KOG1632|consen 213 RKHFSNEELTEPAREPVDESEAPDYSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYK 288 (345)
T ss_pred hhhccCcccccccccCCCcccccccccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhcccee
Confidence 344455555555 566678999999999999988776555433333444445555555555555554333333
Done!