Query psy1225
Match_columns 256
No_of_seqs 308 out of 1950
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 22:35:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uv5_A Transcription initiatio 100.0 6.2E-39 2.1E-43 279.4 17.4 156 2-157 20-237 (265)
2 3aad_A Transcription initiatio 100.0 1.1E-37 3.7E-42 274.9 14.3 156 2-157 53-270 (292)
3 2r0y_A Chromatin structure-rem 100.0 7.8E-37 2.7E-41 271.1 13.3 146 9-156 43-262 (311)
4 2r10_A Chromatin structure-rem 100.0 1.5E-35 5E-40 268.3 14.3 146 9-156 93-312 (361)
5 2dat_A Possible global transcr 99.9 1.4E-26 4.8E-31 179.0 11.0 92 7-98 30-121 (123)
6 3mb4_A Protein polybromo-1; PB 99.9 1.3E-26 4.6E-31 179.4 10.6 90 7-96 32-121 (124)
7 3k2j_A Protein polybromo-1; PB 99.9 1.2E-26 4.2E-31 180.9 10.2 90 7-96 34-123 (130)
8 3iu5_A Protein polybromo-1; PB 99.9 1.1E-26 3.8E-31 177.9 9.6 90 7-96 22-111 (116)
9 3ljw_A Protein polybromo-1; al 99.9 1.3E-26 4.5E-31 178.5 10.0 90 7-96 25-114 (120)
10 3d7c_A General control of amin 99.9 1.3E-26 4.4E-31 176.5 8.9 96 2-97 13-108 (112)
11 1e6i_A Transcriptional activat 99.9 1.5E-26 5E-31 178.4 9.1 97 2-98 19-115 (121)
12 3mqm_A Probable histone-lysine 99.9 2.4E-26 8.1E-31 178.6 9.5 90 7-96 26-115 (126)
13 2grc_A Probable global transcr 99.9 3.5E-26 1.2E-30 178.2 9.4 89 8-96 30-118 (129)
14 3g0l_A Hwalp4, bromodomain adj 99.9 6.8E-26 2.3E-30 173.8 9.8 95 2-96 19-113 (117)
15 2i7k_A Bromodomain-containing 99.9 5.6E-26 1.9E-30 174.0 8.9 95 2-96 14-108 (117)
16 2d9e_A Peregrin; four-helix bu 99.9 5.5E-26 1.9E-30 175.2 8.0 95 2-96 13-107 (121)
17 2oss_A HUNK1 protein, bromodom 99.9 1.2E-25 4.2E-30 174.6 9.8 97 2-98 27-125 (127)
18 3nxb_A CAT eye syndrome critic 99.9 7.8E-26 2.7E-30 173.2 8.4 94 2-95 22-115 (116)
19 3tlp_A Protein polybromo-1; PB 99.9 1.1E-25 3.9E-30 179.8 9.4 93 4-96 39-131 (150)
20 3q2e_A Bromodomain and WD repe 99.9 3.5E-25 1.2E-29 171.2 9.1 96 2-97 16-112 (123)
21 4alg_A Bromodomain-containing 99.9 4.2E-25 1.4E-29 177.0 9.8 97 2-98 38-136 (154)
22 3hme_A Bromodomain-containing 99.9 4E-25 1.4E-29 170.9 9.0 95 2-96 19-113 (123)
23 3uv4_A Second bromodomain of h 99.9 5.7E-25 2E-29 176.8 10.1 102 7-108 41-142 (158)
24 3rcw_A Bromodomain-containing 99.9 4.8E-25 1.6E-29 173.2 8.5 95 2-96 19-113 (135)
25 3mb3_A PH-interacting protein; 99.9 6.2E-25 2.1E-29 172.5 8.5 95 2-96 27-122 (135)
26 2ouo_A HUNK1 protein, bromodom 99.9 1.4E-24 4.6E-29 169.4 9.9 95 3-97 29-128 (130)
27 3jvl_A Bromodomain-containing 99.9 7.8E-25 2.7E-29 168.6 8.2 96 4-99 17-117 (120)
28 3p1f_A CREB-binding protein; s 99.9 7.6E-25 2.6E-29 168.4 8.1 94 3-96 18-114 (119)
29 2yyn_A Transcription intermedi 99.9 2.8E-24 9.5E-29 168.7 9.0 94 2-96 26-121 (135)
30 2ri7_A Nucleosome-remodeling f 99.9 2.3E-24 7.7E-29 176.4 8.5 95 2-96 78-172 (174)
31 3fkm_X Signaling protein; brom 99.9 4.1E-24 1.4E-28 173.3 9.1 98 2-99 27-126 (166)
32 3dai_A ATPase family AAA domai 99.9 6.8E-24 2.3E-28 165.5 9.7 93 2-94 16-112 (130)
33 2r0y_A Chromatin structure-rem 99.9 1.8E-22 6E-27 178.9 10.2 90 7-96 174-263 (311)
34 3uv5_A Transcription initiatio 99.9 4.2E-22 1.4E-26 173.2 11.5 100 7-106 148-247 (265)
35 2dkw_A Hypothetical protein KI 99.9 3.2E-22 1.1E-26 155.9 8.9 98 2-104 18-120 (131)
36 3iu6_A Protein polybromo-1; PB 99.9 5.6E-22 1.9E-26 155.5 10.3 87 6-96 23-109 (147)
37 3o36_A Transcription intermedi 99.9 1.7E-22 5.9E-27 166.6 7.5 94 2-96 87-182 (184)
38 2r10_A Chromatin structure-rem 99.9 5.7E-22 1.9E-26 179.2 10.4 89 8-96 225-313 (361)
39 3aad_A Transcription initiatio 99.9 9.7E-22 3.3E-26 173.0 10.7 98 7-104 181-278 (292)
40 3u5n_A E3 ubiquitin-protein li 99.8 1.1E-21 3.7E-26 164.7 7.9 94 2-96 87-200 (207)
41 2ro1_A Transcription intermedi 99.8 1.2E-21 4.2E-26 162.0 5.5 89 3-96 83-176 (189)
42 3d7c_A General control of amin 99.7 4.8E-16 1.6E-20 117.9 9.9 64 95-158 45-108 (112)
43 1e6i_A Transcriptional activat 99.6 9.2E-16 3.2E-20 117.8 10.7 63 95-157 51-113 (121)
44 2dat_A Possible global transcr 99.6 4.8E-16 1.6E-20 119.8 9.0 105 53-157 10-119 (123)
45 3k2j_A Protein polybromo-1; PB 99.6 1.8E-15 6E-20 117.6 11.0 110 48-157 9-123 (130)
46 3g0l_A Hwalp4, bromodomain adj 99.6 8.8E-16 3E-20 117.3 9.1 62 95-156 51-112 (117)
47 3ljw_A Protein polybromo-1; al 99.6 9E-16 3.1E-20 117.7 9.2 105 53-157 5-114 (120)
48 3mb4_A Protein polybromo-1; PB 99.6 7.4E-16 2.5E-20 118.9 8.4 63 95-157 59-121 (124)
49 3iu6_A Protein polybromo-1; PB 99.6 9.1E-16 3.1E-20 120.3 8.5 78 95-177 47-124 (147)
50 2ouo_A HUNK1 protein, bromodom 99.6 9.3E-16 3.2E-20 119.2 8.6 65 94-158 64-128 (130)
51 3p1f_A CREB-binding protein; s 99.6 1.8E-15 6.3E-20 115.8 10.0 104 52-156 7-113 (119)
52 2oss_A HUNK1 protein, bromodom 99.6 8.4E-16 2.9E-20 119.0 8.2 66 93-158 59-124 (127)
53 3iu5_A Protein polybromo-1; PB 99.6 8.9E-16 3E-20 117.1 7.8 62 95-156 49-110 (116)
54 2i7k_A Bromodomain-containing 99.6 1.6E-15 5.5E-20 115.7 9.0 61 96-156 47-107 (117)
55 3mqm_A Probable histone-lysine 99.6 1.6E-15 5.5E-20 117.3 9.0 63 95-157 53-115 (126)
56 3nxb_A CAT eye syndrome critic 99.6 2.3E-15 7.8E-20 114.8 9.4 62 95-156 54-115 (116)
57 3jvl_A Bromodomain-containing 99.6 1.6E-15 5.6E-20 116.3 8.4 65 94-158 51-115 (120)
58 2d9e_A Peregrin; four-helix bu 99.6 3.8E-15 1.3E-19 114.4 10.2 61 96-156 46-106 (121)
59 2grc_A Probable global transcr 99.6 1.5E-15 5E-20 118.0 7.8 103 53-157 8-118 (129)
60 3fkm_X Signaling protein; brom 99.6 2.9E-15 9.8E-20 121.2 9.8 109 54-164 19-130 (166)
61 3uv4_A Second bromodomain of h 99.6 3.7E-15 1.3E-19 119.5 10.2 62 96-157 69-130 (158)
62 3q2e_A Bromodomain and WD repe 99.6 3.6E-15 1.2E-19 114.9 9.4 60 97-156 50-110 (123)
63 4alg_A Bromodomain-containing 99.6 3E-15 1E-19 119.6 8.3 67 94-160 71-137 (154)
64 3mb3_A PH-interacting protein; 99.6 8.5E-15 2.9E-19 114.6 10.3 62 95-156 59-121 (135)
65 3tlp_A Protein polybromo-1; PB 99.6 4.1E-15 1.4E-19 118.4 7.7 63 95-157 69-131 (150)
66 2yyn_A Transcription intermedi 99.6 7.3E-15 2.5E-19 114.9 8.9 64 94-157 56-121 (135)
67 3hme_A Bromodomain-containing 99.5 8.1E-15 2.8E-19 112.9 7.4 62 95-156 51-112 (123)
68 3rcw_A Bromodomain-containing 99.5 1.2E-14 4.1E-19 113.7 8.2 62 95-156 51-112 (135)
69 2ri7_A Nucleosome-remodeling f 99.5 2.1E-14 7.2E-19 117.0 10.0 63 95-157 110-172 (174)
70 3o36_A Transcription intermedi 99.5 6.9E-14 2.4E-18 114.9 7.8 63 94-156 117-181 (184)
71 2ro1_A Transcription intermedi 99.5 2.8E-14 9.7E-19 117.7 5.5 61 96-157 113-176 (189)
72 2dkw_A Hypothetical protein KI 99.5 3.1E-13 1.1E-17 105.0 10.1 59 97-155 47-109 (131)
73 3dai_A ATPase family AAA domai 99.5 3.9E-13 1.4E-17 104.4 10.2 65 95-159 48-117 (130)
74 3lqh_A Histone-lysine N-methyl 99.4 3.3E-13 1.1E-17 110.2 5.9 84 2-96 81-164 (183)
75 3u5n_A E3 ubiquitin-protein li 99.3 1.1E-12 3.8E-17 109.7 6.3 64 94-157 117-200 (207)
76 1w4s_A Polybromo, polybromo 1 99.3 8.1E-15 2.8E-19 119.5 -8.7 84 171-254 22-118 (174)
77 3lqh_A Histone-lysine N-methyl 99.2 1.2E-10 4.2E-15 95.0 9.9 61 96-156 103-163 (183)
78 3av4_A DNA (cytosine-5)-methyl 97.6 3E-06 1E-10 87.2 -3.6 76 172-247 466-552 (1330)
79 3swr_A DNA (cytosine-5)-methyl 97.2 1.4E-05 5E-10 80.2 -4.2 76 172-247 155-241 (1002)
80 3av4_A DNA (cytosine-5)-methyl 97.0 7E-05 2.4E-09 77.1 -0.9 49 203-251 726-784 (1330)
81 3swr_A DNA (cytosine-5)-methyl 95.4 0.0031 1.1E-07 63.5 0.4 44 207-250 420-472 (1002)
82 4ft4_B DNA (cytosine-5)-methyl 94.0 0.0058 2E-07 60.0 -1.5 76 172-247 54-148 (784)
83 4dov_A ORC1, origin recognitio 91.4 0.036 1.2E-06 43.6 0.0 40 209-248 80-133 (163)
84 3kxe_C Antitoxin protein PARD- 56.2 47 0.0016 23.0 7.9 61 40-110 16-79 (88)
85 4b19_A PEPA1; toxin, toxin apo 31.5 1.1 3.9E-05 24.7 -3.8 22 231-252 6-27 (30)
86 3kxe_C Antitoxin protein PARD- 30.7 52 0.0018 22.7 3.7 28 101-128 16-43 (88)
87 2jb0_B Colicin E7; hydrolase/i 21.0 76 0.0026 23.7 3.1 32 97-129 30-61 (131)
88 1fr2_B Colicin E9; protein-pro 20.8 77 0.0026 23.8 3.1 32 97-129 33-64 (134)
No 1
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=100.00 E-value=6.2e-39 Score=279.40 Aligned_cols=156 Identities=22% Similarity=0.393 Sum_probs=149.7
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
+.+++....++.|++|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++.+
T Consensus 20 ~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~ 99 (265)
T 3uv5_A 20 ESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQI 99 (265)
T ss_dssp HHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc--------------------------------------------------------------ccc
Q psy1225 82 AVKLQKLMQRKVQEN--------------------------------------------------------------PRS 99 (256)
Q Consensus 82 A~~L~~~f~~~~~kl--------------------------------------------------------------P~d 99 (256)
|..|.+.+.+.+.++ |||
T Consensus 100 A~~l~~~~~~~~~~~~~~~~~~ek~i~p~~dd~~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmd 179 (265)
T 3uv5_A 100 SQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 179 (265)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHSTTTTCHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCccc
Confidence 999999998877654 999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 100 LLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 100 l~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
|+||++|+++|.|.++++|..|+.|||.||+.||+++|.+|++|..|++.|.+.++++
T Consensus 180 l~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~ 237 (265)
T 3uv5_A 180 LETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 237 (265)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876
No 2
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=274.88 Aligned_cols=156 Identities=22% Similarity=0.393 Sum_probs=145.0
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
..+++....++.+++|+.||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++.+
T Consensus 53 ~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~ 132 (292)
T 3aad_A 53 ESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQI 132 (292)
T ss_dssp HHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHH
T ss_pred HHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 45777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc--------------------------------------------------------------ccc
Q psy1225 82 AVKLQKLMQRKVQEN--------------------------------------------------------------PRS 99 (256)
Q Consensus 82 A~~L~~~f~~~~~kl--------------------------------------------------------------P~d 99 (256)
|..|.+.|...+.++ |||
T Consensus 133 A~~L~~~~~~~~~~~~~~~~~~e~~i~Pl~dd~~~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~Pmd 212 (292)
T 3aad_A 133 SQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 212 (292)
T ss_dssp HTHHHHTTTTTGGGSHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCC
T ss_pred HHHHHHHHHhhhhcchhhhhhhhhccccccccchhHHHHHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCC
Confidence 998877654433221 999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 100 LLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 100 l~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
|+||++|++++.|.++++|.+|+.|||+||+.||+++|.+|.+|..|++.|.+.++++
T Consensus 213 L~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 270 (292)
T 3aad_A 213 LETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 270 (292)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988765
No 3
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=100.00 E-value=7.8e-37 Score=271.07 Aligned_cols=146 Identities=25% Similarity=0.476 Sum_probs=136.5
Q ss_pred cCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHH
Q psy1225 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYS-TLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87 (256)
Q Consensus 9 ~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~-~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~ 87 (256)
.|+.++++|++||++..+||||++|++||||+||++|| +.|. ++++|.+|++|||.||+.||+++|.++++|..|++
T Consensus 43 ~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~ 120 (311)
T 2r0y_A 43 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVM 120 (311)
T ss_dssp HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred cCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 58899999999999999999999999999999999998 4555 89999999999999999999999999999999998
Q ss_pred HHHHHHhc---------------------------------------------------c--------------------
Q psy1225 88 LMQRKVQE---------------------------------------------------N-------------------- 96 (256)
Q Consensus 88 ~f~~~~~k---------------------------------------------------l-------------------- 96 (256)
+|...+.+ +
T Consensus 121 ~~~~~~~k~k~~~~~~~i~~~~k~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~iI 200 (311)
T 2r0y_A 121 LIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIV 200 (311)
T ss_dssp HHHHHHHHHHTGGGCCBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHHC
T ss_pred HHHHHHhhcccCCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHhccccccccccCCccHHHHhCCCChhhcccHHHHh
Confidence 88753210 1
Q ss_pred --cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 97 --PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 97 --P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
||||+||++||+++.|.++++|.+|++|||+||+.||+++|.+|.+|..|++.|.+++++
T Consensus 201 k~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 262 (311)
T 2r0y_A 201 HSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 262 (311)
T ss_dssp SSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886
No 4
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=100.00 E-value=1.5e-35 Score=268.25 Aligned_cols=146 Identities=25% Similarity=0.476 Sum_probs=136.0
Q ss_pred cCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHH
Q psy1225 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYS-TLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87 (256)
Q Consensus 9 ~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~-~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~ 87 (256)
.|++++++|++||++..+||||++|++||||+||++|| +.|. ++++|.+||+|||.||..||+++|.++.+|..|++
T Consensus 93 ~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~ 170 (361)
T 2r10_A 93 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVM 170 (361)
T ss_dssp HTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHH
T ss_pred cCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999998 4554 89999999999999999999999999999999998
Q ss_pred HHHHHHhc---------------------------------------------------c--------------------
Q psy1225 88 LMQRKVQE---------------------------------------------------N-------------------- 96 (256)
Q Consensus 88 ~f~~~~~k---------------------------------------------------l-------------------- 96 (256)
+|...+.+ +
T Consensus 171 ~~~~~~~k~k~~~~~~~i~~~~k~~l~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~iI 250 (361)
T 2r10_A 171 LIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIV 250 (361)
T ss_dssp HHHHHHHHHHTTTTCCBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHHC
T ss_pred HHHHHHhhccccCCcCcCCHHHHHHHHHHHHHhhccchHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHHh
Confidence 88753210 1
Q ss_pred --cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 97 --PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 97 --P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
||||+||++||+++.|.++++|..||.|||+||+.||+++|.+|.+|..|++.|++++++
T Consensus 251 k~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 312 (361)
T 2r10_A 251 HSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 312 (361)
T ss_dssp SSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886
No 5
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=179.05 Aligned_cols=92 Identities=30% Similarity=0.647 Sum_probs=88.4
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..|++++++|.+||++..+||||++|++||||+||++||+++.|.++++|.+|++|||.||..||+++|.++.+|..|+
T Consensus 30 d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~ 109 (123)
T 2dat_A 30 DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQ 109 (123)
T ss_dssp CSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred cccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc
Q psy1225 87 KLMQRKVQENPR 98 (256)
Q Consensus 87 ~~f~~~~~klP~ 98 (256)
++|+..++++|-
T Consensus 110 ~~f~~~~~~~ps 121 (123)
T 2dat_A 110 SVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHHHSSSC
T ss_pred HHHHHHHHHcCC
Confidence 999999998763
No 6
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=1.3e-26 Score=179.44 Aligned_cols=90 Identities=30% Similarity=0.590 Sum_probs=86.9
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+.+||++|++|.+||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++++|..|+
T Consensus 32 d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~ 111 (124)
T 3mb4_A 32 DKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLH 111 (124)
T ss_dssp CTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred cccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
++|.+.++++
T Consensus 112 ~~f~~~~~~l 121 (124)
T 3mb4_A 112 KVLLETRRDL 121 (124)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 7
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=180.88 Aligned_cols=90 Identities=47% Similarity=0.763 Sum_probs=87.1
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..||++|++|.+||++..+||||++|++||||+||++||++|.|.++++|.+|++|||.||+.||+++|.++++|..|+
T Consensus 34 d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~ 113 (130)
T 3k2j_A 34 NNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQ 113 (130)
T ss_dssp CSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred cccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
+.|.+.++++
T Consensus 114 ~~f~~~~~~l 123 (130)
T 3k2j_A 114 QVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 8
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=177.92 Aligned_cols=90 Identities=37% Similarity=0.636 Sum_probs=86.7
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+.+||++|++|.+||++..+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++++|..|+
T Consensus 22 d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~ 101 (116)
T 3iu5_A 22 DEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLW 101 (116)
T ss_dssp CTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred ccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
+.|.+.++++
T Consensus 102 ~~f~~~~~~l 111 (116)
T 3iu5_A 102 DLYLRTRNEF 111 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 9
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=1.3e-26 Score=178.50 Aligned_cols=90 Identities=36% Similarity=0.639 Sum_probs=87.3
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+.+||++|.+|.+||++..+||||++|++||||+||++||.+|.|.++++|.+|++|||.||..||+++|.++++|..|+
T Consensus 25 d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~ 104 (120)
T 3ljw_A 25 NPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIK 104 (120)
T ss_dssp CTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred CcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
++|...+.++
T Consensus 105 ~~f~~~~~~i 114 (120)
T 3ljw_A 105 KIFYMKKAEI 114 (120)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 10
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=1.3e-26 Score=176.48 Aligned_cols=96 Identities=29% Similarity=0.443 Sum_probs=91.8
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
+.+++....++.+++|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++.+
T Consensus 13 ~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~ 92 (112)
T 3d7c_A 13 KNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRC 92 (112)
T ss_dssp HHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred HHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy1225 82 AVKLQKLMQRKVQENP 97 (256)
Q Consensus 82 A~~L~~~f~~~~~klP 97 (256)
|..|++.|.+.+++++
T Consensus 93 A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 93 ASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999988764
No 11
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=1.5e-26 Score=178.41 Aligned_cols=97 Identities=29% Similarity=0.510 Sum_probs=92.9
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
..+++...+++.+++|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++++
T Consensus 19 ~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~ 98 (121)
T 1e6i_A 19 QNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKY 98 (121)
T ss_dssp HHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred HHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q psy1225 82 AVKLQKLMQRKVQENPR 98 (256)
Q Consensus 82 A~~L~~~f~~~~~klP~ 98 (256)
|..|++.|.+.+.++|-
T Consensus 99 A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 99 ANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp HHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHccc
Confidence 99999999999988864
No 12
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=2.4e-26 Score=178.55 Aligned_cols=90 Identities=32% Similarity=0.555 Sum_probs=86.9
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
+..|+++|++|.+||++..+||||++|++||||+||++||++|.|.++++|.+|++|||.||+.||+++|.++++|..|+
T Consensus 26 d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~ 105 (126)
T 3mqm_A 26 DSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLR 105 (126)
T ss_dssp CTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred CcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
+.|.+.+.++
T Consensus 106 ~~f~~~~~~~ 115 (126)
T 3mqm_A 106 KAYYNARHEA 115 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 13
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=3.5e-26 Score=178.23 Aligned_cols=89 Identities=31% Similarity=0.623 Sum_probs=86.5
Q ss_pred ccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHH
Q psy1225 8 TEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87 (256)
Q Consensus 8 ~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~ 87 (256)
..|+++|++|..||+...+||||++|++||||+||++||.+|.|.++++|.+|++|||.||..||+++|.++.+|..|++
T Consensus 30 ~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~ 109 (129)
T 2grc_A 30 SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQS 109 (129)
T ss_dssp TTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred cccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q psy1225 88 LMQRKVQEN 96 (256)
Q Consensus 88 ~f~~~~~kl 96 (256)
.|...+.++
T Consensus 110 ~f~~~~~~l 118 (129)
T 2grc_A 110 VFTSVRQKI 118 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999988876
No 14
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=6.8e-26 Score=173.79 Aligned_cols=95 Identities=27% Similarity=0.452 Sum_probs=90.7
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
+.+++....++.+++|.+||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++.+
T Consensus 19 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~ 98 (117)
T 3g0l_A 19 SMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRA 98 (117)
T ss_dssp HHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHH
T ss_pred HHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy1225 82 AVKLQKLMQRKVQEN 96 (256)
Q Consensus 82 A~~L~~~f~~~~~kl 96 (256)
|..|++.|++.+.++
T Consensus 99 A~~L~~~f~~~~~~~ 113 (117)
T 3g0l_A 99 GHNMRKYFEKKWTDT 113 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 15
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=5.6e-26 Score=174.00 Aligned_cols=95 Identities=24% Similarity=0.336 Sum_probs=89.7
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
..+++....++.+.+|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++++
T Consensus 14 ~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~ 93 (117)
T 2i7k_A 14 NQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKA 93 (117)
T ss_dssp HHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHH
T ss_pred HHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy1225 82 AVKLQKLMQRKVQEN 96 (256)
Q Consensus 82 A~~L~~~f~~~~~kl 96 (256)
|..|++.+.+.+...
T Consensus 94 A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 94 AKKLLHSGMKILSQE 108 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887643
No 16
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=5.5e-26 Score=175.15 Aligned_cols=95 Identities=24% Similarity=0.411 Sum_probs=89.7
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
+.+++....++.+++|.+||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++.+
T Consensus 13 ~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~ 92 (121)
T 2d9e_A 13 RKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRA 92 (121)
T ss_dssp HHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred HHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy1225 82 AVKLQKLMQRKVQEN 96 (256)
Q Consensus 82 A~~L~~~f~~~~~kl 96 (256)
|..|++.+...+.++
T Consensus 93 A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 93 AVRLREQGGAVLRQA 107 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876643
No 17
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.92 E-value=1.2e-25 Score=174.61 Aligned_cols=97 Identities=30% Similarity=0.389 Sum_probs=91.3
Q ss_pred ccccccccCCccccccccCCCC--CCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAK--RYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~--~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
+.+++....++.|++|.+||+. ..+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++
T Consensus 27 ~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 106 (127)
T 2oss_A 27 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV 106 (127)
T ss_dssp HTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4567788899999999999985 48999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccc
Q psy1225 80 RDAVKLQKLMQRKVQENPR 98 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~klP~ 98 (256)
.+|..|++.|.+.+.++|.
T Consensus 107 ~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 107 LMAEALEKLFLQKINELPT 125 (127)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCC
Confidence 9999999999999988753
No 18
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.92 E-value=7.8e-26 Score=173.18 Aligned_cols=94 Identities=28% Similarity=0.497 Sum_probs=89.8
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
..+++....++.|++|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++.+
T Consensus 22 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~ 101 (116)
T 3nxb_A 22 YKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKM 101 (116)
T ss_dssp HHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy1225 82 AVKLQKLMQRKVQE 95 (256)
Q Consensus 82 A~~L~~~f~~~~~k 95 (256)
|..|++.|...+.+
T Consensus 102 A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 102 SDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 19
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=179.81 Aligned_cols=93 Identities=32% Similarity=0.608 Sum_probs=89.3
Q ss_pred ccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHH
Q psy1225 4 QKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAV 83 (256)
Q Consensus 4 ~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~ 83 (256)
..++..||+++.+|..||++..+||||++|++||||+||++||++|.|.++++|.+|++|||.||+.||+++|.++.+|.
T Consensus 39 ~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~ 118 (150)
T 3tlp_A 39 AREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAH 118 (150)
T ss_dssp CBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHH
T ss_pred HHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 34466799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy1225 84 KLQKLMQRKVQEN 96 (256)
Q Consensus 84 ~L~~~f~~~~~kl 96 (256)
.|+++|.+.+.++
T Consensus 119 ~L~~~f~~~~~~l 131 (150)
T 3tlp_A 119 ILEKLLKEKRKEL 131 (150)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999877
No 20
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=171.23 Aligned_cols=96 Identities=29% Similarity=0.466 Sum_probs=91.3
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC-CchhHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPA-DSRLYR 80 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~-~S~i~~ 80 (256)
+.+++....++.|++|.+||+...+||||++|++||||+||++||++|.|.++++|..|++|||.||+.||++ +|.++.
T Consensus 16 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~ 95 (123)
T 3q2e_A 16 KELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYS 95 (123)
T ss_dssp HHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHHH
T ss_pred HHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Confidence 4577888899999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred HHHHHHHHHHHHHhccc
Q psy1225 81 DAVKLQKLMQRKVQENP 97 (256)
Q Consensus 81 ~A~~L~~~f~~~~~klP 97 (256)
+|..|++.|.+.+.+++
T Consensus 96 ~A~~L~~~f~~~~~~~~ 112 (123)
T 3q2e_A 96 MTLRLSALFEEKMKKIS 112 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988773
No 21
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.92 E-value=4.2e-25 Score=176.97 Aligned_cols=97 Identities=26% Similarity=0.333 Sum_probs=91.8
Q ss_pred ccccccccCCccccccccCCCCC--CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKR--YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~--~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
+.+++....++.+++|.+||+.. ++||||++|++||||+||++||+++.|.++++|.+|++|||.||..||+++|.++
T Consensus 38 ~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~ 117 (154)
T 4alg_A 38 KVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIV 117 (154)
T ss_dssp HTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35677888999999999999977 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccc
Q psy1225 80 RDAVKLQKLMQRKVQENPR 98 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~klP~ 98 (256)
.+|..|+++|...+.++|-
T Consensus 118 ~~A~~L~~~f~~~~~~l~~ 136 (154)
T 4alg_A 118 LMAQTLEKIFLQKVASMPQ 136 (154)
T ss_dssp HHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHHCCc
Confidence 9999999999999998843
No 22
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=170.87 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=89.9
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
+.+++....++.+++|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++++
T Consensus 19 ~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~ 98 (123)
T 3hme_A 19 EHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKL 98 (123)
T ss_dssp HHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred HHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy1225 82 AVKLQKLMQRKVQEN 96 (256)
Q Consensus 82 A~~L~~~f~~~~~kl 96 (256)
|..|.+.+.+.+.+.
T Consensus 99 A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 99 AKKILHAGFKMMSKE 113 (123)
T ss_dssp HHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887643
No 23
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=5.7e-25 Score=176.79 Aligned_cols=102 Identities=25% Similarity=0.423 Sum_probs=94.9
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
...+++.|++|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++++|..|.
T Consensus 41 kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~ 120 (158)
T 3uv4_A 41 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 120 (158)
T ss_dssp TTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccHHHHHHHhh
Q psy1225 87 KLMQRKVQENPRSLLTIGKTLK 108 (256)
Q Consensus 87 ~~f~~~~~klP~dl~~I~~kl~ 108 (256)
+.+...+.+++-.+....+.+.
T Consensus 121 ~~~~~~l~e~~~~l~~le~~i~ 142 (158)
T 3uv4_A 121 NVCYQTLTEYDEHLTQLEKDIC 142 (158)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988766666665553
No 24
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.91 E-value=4.8e-25 Score=173.16 Aligned_cols=95 Identities=26% Similarity=0.445 Sum_probs=90.5
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
+.+++....++.+++|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++++
T Consensus 19 ~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~ 98 (135)
T 3rcw_A 19 RSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRA 98 (135)
T ss_dssp HHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred HHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy1225 82 AVKLQKLMQRKVQEN 96 (256)
Q Consensus 82 A~~L~~~f~~~~~kl 96 (256)
|..|.+.+...+.+.
T Consensus 99 A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 99 AVRLRDQGGVVLRQA 113 (135)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887755
No 25
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.91 E-value=6.2e-25 Score=172.53 Aligned_cols=95 Identities=28% Similarity=0.470 Sum_probs=90.5
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC-CchhHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPA-DSRLYR 80 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~-~S~i~~ 80 (256)
..+++....++.+++|..||+...+||||++|++||||+||++||.+|.|.++++|.+|++|||.||..||++ +|.++.
T Consensus 27 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~ 106 (135)
T 3mb3_A 27 EELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYS 106 (135)
T ss_dssp HHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHHH
T ss_pred HHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Confidence 4567778889999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy1225 81 DAVKLQKLMQRKVQEN 96 (256)
Q Consensus 81 ~A~~L~~~f~~~~~kl 96 (256)
+|..|++.|...+.++
T Consensus 107 ~A~~L~~~f~~~~~~~ 122 (135)
T 3mb3_A 107 MSLRLSAFFEEHISSV 122 (135)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988876
No 26
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.91 E-value=1.4e-24 Score=169.39 Aligned_cols=95 Identities=28% Similarity=0.408 Sum_probs=86.5
Q ss_pred cccccccCCc---cccccccCCCCC--CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCch
Q psy1225 3 PQKNQTEGGN---LSEPFLKLPAKR--YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSR 77 (256)
Q Consensus 3 ~~~~~~~~~~---~s~~F~~~p~~~--~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~ 77 (256)
++|+....+. ++++|..||+.. ++||||++|++||||+||++||.+|.|.++++|.+|++|||.||..||+++|.
T Consensus 29 ~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 108 (130)
T 2ouo_A 29 GILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHE 108 (130)
T ss_dssp HHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3455554444 589999999865 59999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhccc
Q psy1225 78 LYRDAVKLQKLMQRKVQENP 97 (256)
Q Consensus 78 i~~~A~~L~~~f~~~~~klP 97 (256)
++.+|..|++.|...+.++|
T Consensus 109 i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 109 VVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999998875
No 27
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.91 E-value=7.8e-25 Score=168.59 Aligned_cols=96 Identities=29% Similarity=0.415 Sum_probs=87.1
Q ss_pred ccccccCC---ccccccccCCCCCC--CcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q psy1225 4 QKNQTEGG---NLSEPFLKLPAKRY--NPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRL 78 (256)
Q Consensus 4 ~~~~~~~~---~~s~~F~~~p~~~~--~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i 78 (256)
+|+....+ ++|++|..||+... +||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.+
T Consensus 17 il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~ 96 (120)
T 3jvl_A 17 ILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEV 96 (120)
T ss_dssp HHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 44444444 45999999999877 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q psy1225 79 YRDAVKLQKLMQRKVQENPRS 99 (256)
Q Consensus 79 ~~~A~~L~~~f~~~~~klP~d 99 (256)
+.+|..|++.|...+.++|..
T Consensus 97 ~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 97 VAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHCcCC
Confidence 999999999999999988653
No 28
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.91 E-value=7.6e-25 Score=168.40 Aligned_cols=94 Identities=30% Similarity=0.475 Sum_probs=86.2
Q ss_pred cccccc-cCCccccccccCCCCC--CCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 3 PQKNQT-EGGNLSEPFLKLPAKR--YNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 3 ~~~~~~-~~~~~s~~F~~~p~~~--~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
.++... ..++.|.+|..||+.. ++||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++
T Consensus 18 ~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~ 97 (119)
T 3p1f_A 18 PTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY 97 (119)
T ss_dssp HHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 344454 3578999999999987 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy1225 80 RDAVKLQKLMQRKVQEN 96 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~kl 96 (256)
.+|..|++.|++.+.++
T Consensus 98 ~~A~~L~~~f~~~~~~~ 114 (119)
T 3p1f_A 98 KFCSKLAEVFEQEIDPV 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 29
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.90 E-value=2.8e-24 Score=168.66 Aligned_cols=94 Identities=29% Similarity=0.434 Sum_probs=88.4
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKS--GHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~--~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
..+|+....++.+++|..||+. .+||||++|++||||+||++||++ +.|.++++|.+|++|||.||..||+++|.++
T Consensus 26 ~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~ 104 (135)
T 2yyn_A 26 ERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA 104 (135)
T ss_dssp HHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4567788899999999998877 799999999999999999999998 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy1225 80 RDAVKLQKLMQRKVQEN 96 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~kl 96 (256)
.+|..|++.|+..+.++
T Consensus 105 ~~A~~L~~~f~~~~~~~ 121 (135)
T 2yyn_A 105 NAGIKLENYFEELLKNL 121 (135)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998776
No 30
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.90 E-value=2.3e-24 Score=176.35 Aligned_cols=95 Identities=26% Similarity=0.510 Sum_probs=90.9
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
+.+|+....++.+.+|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..||+++|.++++
T Consensus 78 ~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~ 157 (174)
T 2ri7_A 78 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQC 157 (174)
T ss_dssp HHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred HHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy1225 82 AVKLQKLMQRKVQEN 96 (256)
Q Consensus 82 A~~L~~~f~~~~~kl 96 (256)
|..|++.|.+.++++
T Consensus 158 A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 158 AEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998765
No 31
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.90 E-value=4.1e-24 Score=173.27 Aligned_cols=98 Identities=23% Similarity=0.348 Sum_probs=90.0
Q ss_pred ccccccccCCccccccccCCCC--CCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAK--RYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~--~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
+.+|+....++.+.+|..||+. ..+||||++|++||||+||++||.+|.|.++++|.+||+|||.||..||+++|.++
T Consensus 27 ~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~ 106 (166)
T 3fkm_X 27 NQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVA 106 (166)
T ss_dssp HHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSHHH
T ss_pred HHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4577888899999999999874 47999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccc
Q psy1225 80 RDAVKLQKLMQRKVQENPRS 99 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~klP~d 99 (256)
.+|..|+++|.+.+.+++.+
T Consensus 107 ~~A~~L~~~f~~~l~~~~~~ 126 (166)
T 3fkm_X 107 ITGKNIETYFNNQLIVMGYN 126 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 99999999999999988543
No 32
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.90 E-value=6.8e-24 Score=165.49 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=86.0
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchh---
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRL--- 78 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i--- 78 (256)
+.+++...+++.+++|..||+...+||||++|++||||+||++||.+|.|.++++|.+|++|||.||..||+++|++
T Consensus 16 ~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~ 95 (130)
T 3dai_A 16 RNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRL 95 (130)
T ss_dssp HHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHH
T ss_pred HHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHH
Confidence 56777888999999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred -HHHHHHHHHHHHHHHh
Q psy1225 79 -YRDAVKLQKLMQRKVQ 94 (256)
Q Consensus 79 -~~~A~~L~~~f~~~~~ 94 (256)
+..|..|++.+...+.
T Consensus 96 i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 96 IRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6788888888877764
No 33
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=1.8e-22 Score=178.92 Aligned_cols=90 Identities=31% Similarity=0.583 Sum_probs=86.6
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
..++|++|++|++||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||+.||+++|.++.+|..|+
T Consensus 174 ~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~ 253 (311)
T 2r0y_A 174 LDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLT 253 (311)
T ss_dssp CCCSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred cccCCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy1225 87 KLMQRKVQEN 96 (256)
Q Consensus 87 ~~f~~~~~kl 96 (256)
+.|...+++.
T Consensus 254 ~~f~~~~~~~ 263 (311)
T 2r0y_A 254 NYFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=4.2e-22 Score=173.18 Aligned_cols=100 Identities=26% Similarity=0.432 Sum_probs=92.3
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
...+++.|++|..||+...+||||++|++||||+||++||.+|.|.++++|.+|++|||.||..||+++|.++.+|..|.
T Consensus 148 ~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~ 227 (265)
T 3uv5_A 148 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 227 (265)
T ss_dssp TTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccHHHHHHH
Q psy1225 87 KLMQRKVQENPRSLLTIGKT 106 (256)
Q Consensus 87 ~~f~~~~~klP~dl~~I~~k 106 (256)
+.+...+.+++-.+..+...
T Consensus 228 ~~~~~~~~~~~~~~~~~e~~ 247 (265)
T 3uv5_A 228 NVCYQTLTEYDEHLTQLEKD 247 (265)
T ss_dssp HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999998885555444443
No 35
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=155.94 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=86.0
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCch----
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSR---- 77 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~---- 77 (256)
+.+++....++.+++|..| +||||++|++||||+||++||.+|.|.++++|.+|++|||.||..||+++|+
T Consensus 18 ~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~ 92 (131)
T 2dkw_A 18 RDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKI 92 (131)
T ss_dssp HHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHH
T ss_pred HHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHH
Confidence 4567778889999999997 8999999999999999999999999999999999999999999999999996
Q ss_pred hHHHHHHHHHHHHHHH-hcccccHHHHH
Q psy1225 78 LYRDAVKLQKLMQRKV-QENPRSLLTIG 104 (256)
Q Consensus 78 i~~~A~~L~~~f~~~~-~klP~dl~~I~ 104 (256)
++.+|..|++.+...+ .++...+...-
T Consensus 93 i~~~A~~L~~~~~~~l~~~l~~~f~~~~ 120 (131)
T 2dkw_A 93 IRHRACTLKDTAHAIIAAELDPEFNKLC 120 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988876 45544544433
No 36
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=155.52 Aligned_cols=87 Identities=28% Similarity=0.488 Sum_probs=82.7
Q ss_pred ccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHH
Q psy1225 6 NQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKL 85 (256)
Q Consensus 6 ~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L 85 (256)
++.+||.+|++|+++|+++ |+||. ++||+|.+|++||.+|.|+++++|..|+.+||.||+.||.++|++|.+|..|
T Consensus 23 ~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~L 98 (147)
T 3iu6_A 23 QDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVEL 98 (147)
T ss_dssp BCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred cCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3678999999999999998 89998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy1225 86 QKLMQRKVQEN 96 (256)
Q Consensus 86 ~~~f~~~~~kl 96 (256)
+++|.....++
T Consensus 99 q~~f~~~r~eL 109 (147)
T 3iu6_A 99 QQFFIKIRDEL 109 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877655
No 37
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.87 E-value=1.7e-22 Score=166.58 Aligned_cols=94 Identities=29% Similarity=0.434 Sum_probs=87.0
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhhCCCCchhH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKS--GHYSTLNELTGELNLMFENAKKFNPADSRLY 79 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~--~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~ 79 (256)
+.+|.....++.+.+|..||+. .+|+||++|++||||+||++||++ |.|.++++|.+||+|||.||..||+++|.++
T Consensus 87 ~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~ 165 (184)
T 3o36_A 87 ERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA 165 (184)
T ss_dssp HHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3466777788999999999985 489999999999999999999998 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy1225 80 RDAVKLQKLMQRKVQEN 96 (256)
Q Consensus 80 ~~A~~L~~~f~~~~~kl 96 (256)
++|..|++.|.+.++++
T Consensus 166 ~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 166 NAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=5.7e-22 Score=179.24 Aligned_cols=89 Identities=31% Similarity=0.596 Sum_probs=86.1
Q ss_pred ccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHH
Q psy1225 8 TEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 87 (256)
Q Consensus 8 ~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~ 87 (256)
.++|++|++|++||+...+||||++|++||||+||++||.+|.|.++++|.+||+|||.||..||+++|.++.+|..|++
T Consensus 225 ~~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 304 (361)
T 2r10_A 225 DDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 304 (361)
T ss_dssp CCSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred ccCCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q psy1225 88 LMQRKVQEN 96 (256)
Q Consensus 88 ~f~~~~~kl 96 (256)
.|...+.+.
T Consensus 305 ~f~~~~~~~ 313 (361)
T 2r10_A 305 YFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998874
No 39
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=9.7e-22 Score=172.98 Aligned_cols=98 Identities=26% Similarity=0.430 Sum_probs=89.8
Q ss_pred cccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q psy1225 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86 (256)
Q Consensus 7 ~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~ 86 (256)
...+++.+++|..||+...+||||++|++||||+||++||.+|.|.++++|.+|++|||.||..||+++|.++.+|..|+
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~ 260 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 260 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccHHHHH
Q psy1225 87 KLMQRKVQENPRSLLTIG 104 (256)
Q Consensus 87 ~~f~~~~~klP~dl~~I~ 104 (256)
+.+...+.++.-.+..+.
T Consensus 261 ~~~~~~~~~~~~~l~~le 278 (292)
T 3aad_A 261 NVCYQTLTEYDEHLTQLE 278 (292)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998887644443333
No 40
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.85 E-value=1.1e-21 Score=164.67 Aligned_cols=94 Identities=28% Similarity=0.426 Sum_probs=87.5
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhhhCC-----
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKS---GHYSTLNELTGELNLMFENAKKFNP----- 73 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~---~~Y~~~~ef~~D~~li~~Na~~yN~----- 73 (256)
+.+|.....++.|.+|.+||+. .+|+||++|++||||+||++||++ |.|.++++|.+|++|||.||+.||+
T Consensus 87 ~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v 165 (207)
T 3u5n_A 87 ERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVV 165 (207)
T ss_dssp HHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchH
Confidence 3577788899999999999886 799999999999999999999997 7999999999999999999999999
Q ss_pred ------------CCchhHHHHHHHHHHHHHHHhcc
Q psy1225 74 ------------ADSRLYRDAVKLQKLMQRKVQEN 96 (256)
Q Consensus 74 ------------~~S~i~~~A~~L~~~f~~~~~kl 96 (256)
++|.++++|..|+..|...++++
T Consensus 166 ~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 166 QVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp C----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988765
No 41
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=161.95 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=83.5
Q ss_pred cccccccCCccccccccCCCCCCCcchhhhcC--CcCcHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHhhhCCCCch
Q psy1225 3 PQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIK--NPRSLLTIGKTLKSG---HYSTLNELTGELNLMFENAKKFNPADSR 77 (256)
Q Consensus 3 ~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~--~PmdL~tI~~kl~~~---~Y~~~~ef~~D~~li~~Na~~yN~~~S~ 77 (256)
.+|+....++.|++|.+||+ |+||++|+ +||||+||++||+++ .|.++++|.+||+|||.||++|| +++.
T Consensus 83 ~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~~s~ 157 (189)
T 2ro1_A 83 RVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-EDKA 157 (189)
T ss_dssp HHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-CSSC
T ss_pred HHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-CCCH
Confidence 46777888999999999998 78999998 899999999999999 99999999999999999999999 5889
Q ss_pred hHHHHHHHHHHHHHHHhcc
Q psy1225 78 LYRDAVKLQKLMQRKVQEN 96 (256)
Q Consensus 78 i~~~A~~L~~~f~~~~~kl 96 (256)
++++|..|++.|++.++++
T Consensus 158 ~~~~a~~L~~~Fe~~~~~~ 176 (189)
T 2ro1_A 158 DVQSIIGLQRFFETRMNEA 176 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876
No 42
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.65 E-value=4.8e-16 Score=117.86 Aligned_cols=64 Identities=30% Similarity=0.408 Sum_probs=60.9
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFS 158 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~ 158 (256)
+-||||+||++|+++|.|.++++|.+|++|||+||+.||+++|.++.+|..|++.|.+++++++
T Consensus 45 k~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 45 RFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp SSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 3399999999999999999999999999999999999999999999999999999999998753
No 43
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.65 E-value=9.2e-16 Score=117.84 Aligned_cols=63 Identities=27% Similarity=0.537 Sum_probs=60.7
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+-||||+||++|+++|.|.++++|.+|++|||+||+.||+++|.++++|..|++.|.++++++
T Consensus 51 k~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 51 KEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp SSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 339999999999999999999999999999999999999999999999999999999999876
No 44
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=119.77 Aligned_cols=105 Identities=20% Similarity=0.358 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHHHhhhCC----CCchhHHHHHHHHHH-HHHHHhcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy1225 53 TLNELTGELNLMFENAKKFNP----ADSRLYRDAVKLQKL-MQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFE 127 (256)
Q Consensus 53 ~~~ef~~D~~li~~Na~~yN~----~~S~i~~~A~~L~~~-f~~~~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~ 127 (256)
+..++.+-+..|+.....+-. +-+..+.....-..+ -...+.+-||||+||++|++++.|.++++|.+|++|||.
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 455666777777777665531 123333322211100 011233449999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 128 NAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 128 Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
||+.||+++|.+|++|..|++.|+++++++
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999875
No 45
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=117.64 Aligned_cols=110 Identities=30% Similarity=0.412 Sum_probs=81.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhCCCC----chhHHHHHHHHHH-HHHHHhcccccHHHHHHHhhcCCCCCHHHHHHHH
Q psy1225 48 SGHYSTLNELTGELNLMFENAKKFNPAD----SRLYRDAVKLQKL-MQRKVQENPRSLLTIGKTLKSGHYSTLNELTGEL 122 (256)
Q Consensus 48 ~~~Y~~~~ef~~D~~li~~Na~~yN~~~----S~i~~~A~~L~~~-f~~~~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~ 122 (256)
++.+....++...+..++.-...+-... +..+.....-..+ -...+.+-||||+||++||+++.|.++++|..|+
T Consensus 9 ~~~~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv 88 (130)
T 3k2j_A 9 SGVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDL 88 (130)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3456667777777777777666553321 3333222111100 0112334499999999999999999999999999
Q ss_pred HHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 123 NLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 123 ~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+|||.||+.||+++|.++++|..|++.|.++++++
T Consensus 89 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 89 NLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864
No 46
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.63 E-value=8.8e-16 Score=117.29 Aligned_cols=62 Identities=29% Similarity=0.552 Sum_probs=59.6
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+-||||++|++|++++.|.++++|.+|+.|||.||+.||+++|.++++|..|++.|++++++
T Consensus 51 ~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 112 (117)
T 3g0l_A 51 KKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTD 112 (117)
T ss_dssp SSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33999999999999999999999999999999999999999999999999999999999875
No 47
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.63 E-value=9e-16 Score=117.74 Aligned_cols=105 Identities=21% Similarity=0.366 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCC----chhHHHHHHHHHH-HHHHHhcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy1225 53 TLNELTGELNLMFENAKKFNPAD----SRLYRDAVKLQKL-MQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFE 127 (256)
Q Consensus 53 ~~~ef~~D~~li~~Na~~yN~~~----S~i~~~A~~L~~~-f~~~~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~ 127 (256)
+++.+..-++.++.-...+..++ +..+.....-..+ -...+.+-||||++|++|++++.|.++++|..|+.|||.
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 45666666777776665543321 2222221110000 011233449999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 128 NAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 128 Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
||+.||+++|.++++|..|++.|.++++++
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998864
No 48
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.63 E-value=7.4e-16 Score=118.90 Aligned_cols=63 Identities=22% Similarity=0.525 Sum_probs=60.7
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+-||||+||++||+++.|.++++|..|++|||.||+.||+++|.++++|..|++.|.++++++
T Consensus 59 ~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 59 KKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp SSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999999999999999999999999999999999999999999999999999875
No 49
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.62 E-value=9.1e-16 Score=120.28 Aligned_cols=78 Identities=24% Similarity=0.432 Sum_probs=70.3
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCChhhhhchhhhhhccch
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFSLNELTGELSLMFENAK 174 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~~~~~~~d~~~~~~n~~ 174 (256)
+.||+|++|++|++++.|.++++|..|+.+||+||+.||.+||+||+||..|++.|.+..++ ++.++.....+|.
T Consensus 47 k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~e-----L~~~g~~~~spa~ 121 (147)
T 3iu6_A 47 KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDE-----LCKNGEILLSPAL 121 (147)
T ss_dssp SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH-----HHHHTTCCCCGGG
T ss_pred CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-----HhhCCCeecCcch
Confidence 55999999999999999999999999999999999999999999999999999999998864 5666656667777
Q ss_pred hcC
Q psy1225 175 KFN 177 (256)
Q Consensus 175 ~yn 177 (256)
.|.
T Consensus 122 ~~t 124 (147)
T 3iu6_A 122 SYT 124 (147)
T ss_dssp GSC
T ss_pred hhh
Confidence 666
No 50
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.62 E-value=9.3e-16 Score=119.24 Aligned_cols=65 Identities=28% Similarity=0.491 Sum_probs=61.6
Q ss_pred hcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy1225 94 QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFS 158 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~ 158 (256)
.+-||||+||++||+++.|.++++|.+|++|||.||+.||+++|.++.+|..|++.|+++++++.
T Consensus 64 Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 64 IKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred cCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 34499999999999999999999999999999999999999999999999999999999998764
No 51
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.62 E-value=1.8e-15 Score=115.84 Aligned_cols=104 Identities=26% Similarity=0.352 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHH---HHHHHHhcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q psy1225 52 STLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK---LMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFEN 128 (256)
Q Consensus 52 ~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~---~f~~~~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~N 128 (256)
.+.+++..-+..++......+ +.+..+.....-.. --...+.+-||||+||++|++++.|.++++|.+|+.|||+|
T Consensus 7 ~~~~el~~~l~~~l~~l~~~~-~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 7 FKPEELRQALMPTLEALYRQD-PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHTCT-TTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 356777777777777654422 33443333222111 01122344599999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 129 AKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 129 a~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
|+.||+++|.++++|..|++.|++.+++
T Consensus 86 a~~yN~~~s~i~~~A~~L~~~f~~~~~~ 113 (119)
T 3p1f_A 86 AWLYNRKTSRVYKFCSKLAEVFEQEIDP 113 (119)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874
No 52
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.62 E-value=8.4e-16 Score=119.02 Aligned_cols=66 Identities=27% Similarity=0.389 Sum_probs=62.2
Q ss_pred HhcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy1225 93 VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFS 158 (256)
Q Consensus 93 ~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~ 158 (256)
+.+-||||+||++|++++.|.++++|.+|+.|||+||+.||+++|.++.+|..|++.|.++++++.
T Consensus 59 iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 59 IIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 344499999999999999999999999999999999999999999999999999999999998764
No 53
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=117.09 Aligned_cols=62 Identities=37% Similarity=0.564 Sum_probs=59.7
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+-||||++|++|++++.|.++++|..|++|||.||+.||+++|.++++|..|++.|.+.+++
T Consensus 49 ~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 110 (116)
T 3iu5_A 49 SQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNE 110 (116)
T ss_dssp SSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44999999999999999999999999999999999999999999999999999999998875
No 54
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=115.74 Aligned_cols=61 Identities=25% Similarity=0.440 Sum_probs=59.0
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
-||||+||++|+++|.|.++++|.+|++|||+||+.||+++|.++++|..|++.|.+.+++
T Consensus 47 ~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 107 (117)
T 2i7k_A 47 HPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQ 107 (117)
T ss_dssp CCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999998874
No 55
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=117.31 Aligned_cols=63 Identities=29% Similarity=0.453 Sum_probs=59.9
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+-||||++|++|++++.|.++++|.+|+.|||.||+.||+++|.+|++|..|++.|.++++++
T Consensus 53 k~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 115 (126)
T 3mqm_A 53 SDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEA 115 (126)
T ss_dssp SSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999999999999999999999999999999999999999999988753
No 56
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.61 E-value=2.3e-15 Score=114.81 Aligned_cols=62 Identities=24% Similarity=0.482 Sum_probs=59.3
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+-||||+||++|++++.|.++++|..|+.|||.||+.||+++|.++.+|..|++.|++.++.
T Consensus 54 ~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 54 KAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp SSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 33999999999999999999999999999999999999999999999999999999998864
No 57
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.61 E-value=1.6e-15 Score=116.28 Aligned_cols=65 Identities=29% Similarity=0.496 Sum_probs=61.8
Q ss_pred hcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy1225 94 QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFS 158 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~ 158 (256)
.+-||||+||++|++++.|.++++|..|++|||.||+.||+++|.++.+|..|++.|+++++++.
T Consensus 51 I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 51 IKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 34499999999999999999999999999999999999999999999999999999999998764
No 58
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=114.38 Aligned_cols=61 Identities=25% Similarity=0.512 Sum_probs=58.6
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
-||||++|++|++++.|.++++|.+|++|||.||+.||+++|.+|++|..|++.|.+.+++
T Consensus 46 ~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~ 106 (121)
T 2d9e_A 46 KPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQ 106 (121)
T ss_dssp SCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999888765
No 59
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.60 E-value=1.5e-15 Score=117.99 Aligned_cols=103 Identities=21% Similarity=0.383 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHHHhhhCC-----CCchhHHHHHH---HHHHHHHHHhcccccHHHHHHHhhcCCCCCHHHHHHHHHH
Q psy1225 53 TLNELTGELNLMFENAKKFNP-----ADSRLYRDAVK---LQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNL 124 (256)
Q Consensus 53 ~~~ef~~D~~li~~Na~~yN~-----~~S~i~~~A~~---L~~~f~~~~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~l 124 (256)
+..++.+-+..|+.....+-. +.+..+..... +-.+ ..+.+-||||+||++||+++.|.++++|.+|+.|
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY--~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY--YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHH--HHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCH--HHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 345566666666666655421 12233322211 1111 1233449999999999999999999999999999
Q ss_pred HHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 125 MFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 125 mf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
||+||+.||+++|.+|.+|..|++.|.+.++++
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 118 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKI 118 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998865
No 60
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.60 E-value=2.9e-15 Score=121.18 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHH-HH--HhcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhh
Q psy1225 54 LNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ-RK--VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAK 130 (256)
Q Consensus 54 ~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~~f~-~~--~~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~ 130 (256)
..+|..-+..|+.... ..+.+..+.......+.-. .. +.+-||||+||++||+++.|.++++|..|++|||.||+
T Consensus 19 ~~~~~~~~~~il~~L~--~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 19 NKQWYLLANQLILSLS--KYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp THHHHHHHHHHHHHHT--TSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--hCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455555555554433 3344554444332221111 11 12239999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhcCChhhhhc
Q psy1225 131 KFNPADSRLYRDAVKLQKLMQRKVQEFSLNELTG 164 (256)
Q Consensus 131 ~yN~~~s~i~~~a~~L~~~~~~~~~~~~~~~~~~ 164 (256)
.||+++|.++.+|..|++.|.++++++..+.+..
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~~~~~~~~ 130 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVMGYNNFIL 130 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccccccch
Confidence 9999999999999999999999999887666553
No 61
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.60 E-value=3.7e-15 Score=119.50 Aligned_cols=62 Identities=24% Similarity=0.461 Sum_probs=60.2
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
-||||+||++|++++.|.++++|..|+.|||.||+.||+++|.++++|..|++.|.+.++++
T Consensus 69 ~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~ 130 (158)
T 3uv4_A 69 NPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 130 (158)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999876
No 62
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=114.88 Aligned_cols=60 Identities=30% Similarity=0.621 Sum_probs=58.5
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCC-CCHHHHHHHHHHHHHHHHHhc
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPA-DSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~-~s~i~~~a~~L~~~~~~~~~~ 156 (256)
||||+||++||+++.|.++++|..|+.|||.||+.||++ +|.+|.+|..|++.|.+++++
T Consensus 50 PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~ 110 (123)
T 3q2e_A 50 PMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKK 110 (123)
T ss_dssp CCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 999999999999999999886
No 63
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.58 E-value=3e-15 Score=119.60 Aligned_cols=67 Identities=24% Similarity=0.341 Sum_probs=63.0
Q ss_pred hcccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcCChh
Q psy1225 94 QENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFSLN 160 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~~~~ 160 (256)
.+-||||+||++||+++.|.++++|.+|++|||.||+.||+++|.++.+|..|++.|.++++++..+
T Consensus 71 Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 71 IKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCch
Confidence 3449999999999999999999999999999999999999999999999999999999999987544
No 64
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.58 E-value=8.5e-15 Score=114.57 Aligned_cols=62 Identities=27% Similarity=0.632 Sum_probs=59.3
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCC-CCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPA-DSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~-~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+-||||+||++||+++.|.++++|.+|+.|||.||+.||++ +|.+|.+|..|++.|.+++++
T Consensus 59 ~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~ 121 (135)
T 3mb3_A 59 DTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISS 121 (135)
T ss_dssp SSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999997 999999999999999999875
No 65
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=118.40 Aligned_cols=63 Identities=30% Similarity=0.563 Sum_probs=60.7
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+-||||++|++||+++.|.++++|..|+.|||.||+.||+++|.+|++|..|++.|.++++++
T Consensus 69 k~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 131 (150)
T 3tlp_A 69 LEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKEL 131 (150)
T ss_dssp SSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 349999999999999999999999999999999999999999999999999999999999875
No 66
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=114.90 Aligned_cols=64 Identities=28% Similarity=0.534 Sum_probs=59.8
Q ss_pred hcccccHHHHHHHhhc--CCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 94 QENPRSLLTIGKTLKS--GHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~--~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
.+-||||+||++||++ +.|.++++|.+|++|||.||+.||+++|.++++|..|++.|+++++++
T Consensus 56 Ik~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 121 (135)
T 2yyn_A 56 IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 121 (135)
T ss_dssp CSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3449999999999998 599999999999999999999999999999999999999999998763
No 67
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.55 E-value=8.1e-15 Score=112.87 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=58.8
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+-||||+||++|++++.|.++++|..|+.|||.||+.||+++|.++++|..|++.|.+.+++
T Consensus 51 k~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 51 KHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp SSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44999999999999999999999999999999999999999999999999999999887754
No 68
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=113.72 Aligned_cols=62 Identities=27% Similarity=0.531 Sum_probs=59.1
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
+-||||++|++|++++.|.++++|.+|+.|||.||+.||+++|.+|++|..|++.+.+.+++
T Consensus 51 ~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (135)
T 3rcw_A 51 KHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQ 112 (135)
T ss_dssp SSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33999999999999999999999999999999999999999999999999999999888875
No 69
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.54 E-value=2.1e-14 Score=116.99 Aligned_cols=63 Identities=27% Similarity=0.576 Sum_probs=60.1
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
+-||||+||++||+++.|.++++|.+|+.|||.||+.||+++|.++++|..|++.|.++++++
T Consensus 110 ~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 110 KEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp SSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 339999999999999999999999999999999999999999999999999999999998764
No 70
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.47 E-value=6.9e-14 Score=114.95 Aligned_cols=63 Identities=29% Similarity=0.532 Sum_probs=59.6
Q ss_pred hcccccHHHHHHHhhc--CCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 94 QENPRSLLTIGKTLKS--GHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~--~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
.+-||||+||++||++ +.|.++++|.+||+|||.||+.||+++|.++++|..|++.|++++++
T Consensus 117 Ik~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~ 181 (184)
T 3o36_A 117 IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKN 181 (184)
T ss_dssp CSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3449999999999998 79999999999999999999999999999999999999999999875
No 71
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-14 Score=117.70 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=57.9
Q ss_pred ccccHHHHHHHhhcC---CCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy1225 96 NPRSLLTIGKTLKSG---HYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157 (256)
Q Consensus 96 lP~dl~~I~~kl~~~---~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~~ 157 (256)
-||||+||++||+++ .|.++++|.+|++|||+||+.|| ++|.++++|..|++.|+++++++
T Consensus 113 ~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~ 176 (189)
T 2ro1_A 113 GTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEA 176 (189)
T ss_dssp CCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 399999999999999 99999999999999999999999 68899999999999999999864
No 72
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.1e-13 Score=105.00 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=55.8
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCH----HHHHHHHHHHHHHHHHh
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSR----LYRDAVKLQKLMQRKVQ 155 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~----i~~~a~~L~~~~~~~~~ 155 (256)
||||+||++|++++.|.++++|..|+.|||.||+.||+++|+ ++.+|..|++.+...++
T Consensus 47 PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 47 PMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999995 67999999999988774
No 73
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.45 E-value=3.9e-13 Score=104.36 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=58.3
Q ss_pred cccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHH----HHHHHHHHHHHHHHHh-cCCh
Q psy1225 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRL----YRDAVKLQKLMQRKVQ-EFSL 159 (256)
Q Consensus 95 klP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i----~~~a~~L~~~~~~~~~-~~~~ 159 (256)
+-||||+||++|++++.|.++++|..|+.|||.||+.||+++|.+ +.+|..|++.+...++ +++.
T Consensus 48 ~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~ 117 (130)
T 3dai_A 48 KQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE 117 (130)
T ss_dssp SSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 339999999999999999999999999999999999999999866 7889999999988886 4433
No 74
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.38 E-value=3.3e-13 Score=110.25 Aligned_cols=84 Identities=10% Similarity=0.245 Sum_probs=73.5
Q ss_pred ccccccccCCccccccccCCCCCCCcchhhhcCCcCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHH
Q psy1225 2 RPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRD 81 (256)
Q Consensus 2 ~~~~~~~~~~~~s~~F~~~p~~~~~pdYy~~I~~PmdL~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~ 81 (256)
+.+|+....+..|.||.+. .++.||||.+|++||+.|.|.++++|..||.+||.||..+|++.+.+.++
T Consensus 81 ~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~a 149 (183)
T 3lqh_A 81 KQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKA 149 (183)
T ss_dssp HHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhh
Confidence 4566667778888888762 25999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy1225 82 AVKLQKLMQRKVQEN 96 (256)
Q Consensus 82 A~~L~~~f~~~~~kl 96 (256)
+..|+..|.+.++++
T Consensus 150 g~~l~~~f~~~l~~v 164 (183)
T 3lqh_A 150 NSMVKSFFIRQMERV 164 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999988765
No 75
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.33 E-value=1.1e-12 Score=109.69 Aligned_cols=64 Identities=27% Similarity=0.513 Sum_probs=59.9
Q ss_pred hcccccHHHHHHHhhc---CCCCCHHHHHHHHHHHHHhhhhhCC-----------------CCCHHHHHHHHHHHHHHHH
Q psy1225 94 QENPRSLLTIGKTLKS---GHYSTLNELTGELNLMFENAKKFNP-----------------ADSRLYRDAVKLQKLMQRK 153 (256)
Q Consensus 94 ~klP~dl~~I~~kl~~---~~Y~s~~~f~~D~~lmf~Na~~yN~-----------------~~s~i~~~a~~L~~~~~~~ 153 (256)
.+-||||++|++||++ +.|.++++|.+|++|||.||+.||+ ++|.++++|..|++.|+++
T Consensus 117 Ik~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~ 196 (207)
T 3u5n_A 117 IKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDK 196 (207)
T ss_dssp CSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHH
T ss_pred hCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence 4449999999999997 7999999999999999999999999 9999999999999999999
Q ss_pred HhcC
Q psy1225 154 VQEF 157 (256)
Q Consensus 154 ~~~~ 157 (256)
++++
T Consensus 197 ~~~~ 200 (207)
T 3u5n_A 197 LTEI 200 (207)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 76
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.29 E-value=8.1e-15 Score=119.49 Aligned_cols=84 Identities=10% Similarity=-0.007 Sum_probs=69.3
Q ss_pred ccchhcCCccccccccHHH-----HHHHHHHHHHHhcCCCC-ccceeecccceeEe-------EEeecCcccccccCCCC
Q psy1225 171 ENAKKFNPADLRLYRDAVK-----LQKLMQRKVQEVMILDI-ECQVYLISDELTHY-------QVVLTGTAEQVRLSGLP 237 (256)
Q Consensus 171 ~n~~~yn~~~~~i~~~a~~-----l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-------ev~kt~~~~~~~~~~i~ 237 (256)
.++..|+.+|++....++. +.+|.+.|.+.+|..++ ++||||||+|.|.. |||+|+++.++|++.|+
T Consensus 22 ~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~EvF~S~~~d~~~~~~I~ 101 (174)
T 1w4s_A 22 FKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKIL 101 (174)
T ss_dssp ----CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETTEEEEEEEEEEEEGGGEE
T ss_pred ECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCCeeEEeCCcceecHHHee
Confidence 3567888888888776553 34588888878898898 69999999998642 99999999999999999
Q ss_pred CCceeeeeecccccCCC
Q psy1225 238 DGDWLAFTLPVVSGKAS 254 (256)
Q Consensus 238 ~~~~v~f~~~~~~g~~~ 254 (256)
|+|.|+++..|.+|+|.
T Consensus 102 gkC~V~~~~~~~~~~p~ 118 (174)
T 1w4s_A 102 GKCVVMFVKEYFKLCPE 118 (174)
T ss_dssp EEEEEEEHHHHTTEEET
T ss_pred eeEEEEECchhhhcCcC
Confidence 99999999999999874
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.17 E-value=1.2e-10 Score=95.03 Aligned_cols=61 Identities=11% Similarity=0.341 Sum_probs=58.8
Q ss_pred ccccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy1225 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQE 156 (256)
Q Consensus 96 lP~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na~~yN~~~s~i~~~a~~L~~~~~~~~~~ 156 (256)
.||||.+|++|++++.|.|+++|+.|+.+||.||..+|+++|++.+++..|+.+|.+++++
T Consensus 103 ~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~ 163 (183)
T 3lqh_A 103 QPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMER 163 (183)
T ss_dssp -CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999885
No 78
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=97.59 E-value=3e-06 Score=87.16 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=60.2
Q ss_pred cchhcCCccccccccH--HH---HHHHHHHHHHHhcCCCC-ccceeecccceeEe-----EEeecCcccccccCCCCCCc
Q psy1225 172 NAKKFNPADLRLYRDA--VK---LQKLMQRKVQEVMILDI-ECQVYLISDELTHY-----QVVLTGTAEQVRLSGLPDGD 240 (256)
Q Consensus 172 n~~~yn~~~~~i~~~a--~~---l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-----ev~kt~~~~~~~~~~i~~~~ 240 (256)
++..|+.+|.+..... +. +.+|.+.|.+.+|..|+ ++|||||++|+|.. |||+|.+..+.|++.|+|+|
T Consensus 466 ~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~~~~~rElFlS~~~d~~~l~~I~gKC 545 (1330)
T 3av4_A 466 DEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKV 545 (1330)
T ss_dssp ESSEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGGGSCTTEEEEEEEEEEEEGGGEEEEE
T ss_pred CCEEEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHcccccccCCCeEEEecccccCcHHHhccee
Confidence 4556666776654422 21 34577778888898899 68999999998642 99999999999999999999
Q ss_pred eeeeeec
Q psy1225 241 WLAFTLP 247 (256)
Q Consensus 241 ~v~f~~~ 247 (256)
.|++..+
T Consensus 546 ~V~~~~~ 552 (1330)
T 3av4_A 546 KVIYKAP 552 (1330)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9999877
No 79
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=97.18 E-value=1.4e-05 Score=80.16 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=59.0
Q ss_pred cchhcCCccccccc--cHHH---HHHHHHHHHHHhcCCCC-ccceeecccceeEe-----EEeecCcccccccCCCCCCc
Q psy1225 172 NAKKFNPADLRLYR--DAVK---LQKLMQRKVQEVMILDI-ECQVYLISDELTHY-----QVVLTGTAEQVRLSGLPDGD 240 (256)
Q Consensus 172 n~~~yn~~~~~i~~--~a~~---l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h~~-----ev~kt~~~~~~~~~~i~~~~ 240 (256)
++..|..+|-++.. +++. +.+|...|.+.+|.+++ +.|||||++|+|.. |||+|..+.+.+++.|+|+|
T Consensus 155 ~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~~~~~~ElFlsd~cd~~~l~~I~gkc 234 (1002)
T 3swr_A 155 DAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKV 234 (1002)
T ss_dssp TTEEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGGGSCTTEEEEEEEEEEEEGGGEEEEE
T ss_pred CCEEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhcccccCCCCCceEeeccccCCcHHHhceee
Confidence 44556666655543 2222 23477778888888888 68999999998874 99999999999999999999
Q ss_pred eeeeeec
Q psy1225 241 WLAFTLP 247 (256)
Q Consensus 241 ~v~f~~~ 247 (256)
.|++...
T Consensus 235 ~V~~~~~ 241 (1002)
T 3swr_A 235 KVIYKAP 241 (1002)
T ss_dssp CEEECCC
T ss_pred EEEEccC
Confidence 9998755
No 80
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=97.04 E-value=7e-05 Score=77.13 Aligned_cols=49 Identities=6% Similarity=0.068 Sum_probs=42.7
Q ss_pred CCCC-ccceeecccceeE---------eEEeecCcccccccCCCCCCceeeeeeccccc
Q psy1225 203 ILDI-ECQVYLISDELTH---------YQVVLTGTAEQVRLSGLPDGDWLAFTLPVVSG 251 (256)
Q Consensus 203 ~~~~-~c~y~rpeqt~h~---------~ev~kt~~~~~~~~~~i~~~~~v~f~~~~~~g 251 (256)
..++ .+||||||+|.|. .|||-|.++..+|++.|.|+|+|.|++.+++.
T Consensus 726 ~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~ 784 (1330)
T 3av4_A 726 DIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLES 784 (1330)
T ss_dssp CCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSC
T ss_pred ceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEeccccccc
Confidence 3466 5899999999753 19999999999999999999999999988774
No 81
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=95.38 E-value=0.0031 Score=63.47 Aligned_cols=44 Identities=5% Similarity=0.006 Sum_probs=38.3
Q ss_pred ccceeecccceeE---------eEEeecCcccccccCCCCCCceeeeeecccc
Q psy1225 207 ECQVYLISDELTH---------YQVVLTGTAEQVRLSGLPDGDWLAFTLPVVS 250 (256)
Q Consensus 207 ~c~y~rpeqt~h~---------~ev~kt~~~~~~~~~~i~~~~~v~f~~~~~~ 250 (256)
..||||||+|-|. .|||.|.++..+|++.|.|+|.|+++.-+..
T Consensus 420 v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~ 472 (1002)
T 3swr_A 420 VNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPE 472 (1002)
T ss_dssp EEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSS
T ss_pred EEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccc
Confidence 4899999998541 3999999999999999999999999977653
No 82
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=94.03 E-value=0.0058 Score=59.98 Aligned_cols=76 Identities=8% Similarity=-0.021 Sum_probs=53.7
Q ss_pred cchhcCCccccccccHH----HHHHHHHHHHHHhcCCCC-ccceeeccccee-----------E---eEEeecCcccccc
Q psy1225 172 NAKKFNPADLRLYRDAV----KLQKLMQRKVQEVMILDI-ECQVYLISDELT-----------H---YQVVLTGTAEQVR 232 (256)
Q Consensus 172 n~~~yn~~~~~i~~~a~----~l~~i~~~~~~~~g~~~~-~c~y~rpeqt~h-----------~---~ev~kt~~~~~~~ 232 (256)
++..|+.+|-...+... -+.+|...+...+|..++ +=|+||||+|+- + .|||.|+...+.+
T Consensus 54 ~~~~~~~~d~~~v~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~~s~~~~~~~ 133 (784)
T 4ft4_B 54 DNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNV 133 (784)
T ss_dssp TTEEEETTCEEEECCSTTSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEEEEEEEEEEE
T ss_pred CCEEEeCCCeEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccccceEEEeCcEEEec
Confidence 34556655554443211 123444445566788888 469999999962 1 1999999999999
Q ss_pred cCCCCCCceeeeeec
Q psy1225 233 LSGLPDGDWLAFTLP 247 (256)
Q Consensus 233 ~~~i~~~~~v~f~~~ 247 (256)
++.|++||.|++...
T Consensus 134 ~~~i~~k~~v~~~~~ 148 (784)
T 4ft4_B 134 LDCIISKVKIVHVDP 148 (784)
T ss_dssp GGGEEEECCEEECCT
T ss_pred hHHeeeeEEEEeeCc
Confidence 999999999998654
No 83
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=91.42 E-value=0.036 Score=43.64 Aligned_cols=40 Identities=3% Similarity=-0.030 Sum_probs=32.2
Q ss_pred ceeecccceeE------e-----EEeecCccc---ccccCCCCCCceeeeeecc
Q psy1225 209 QVYLISDELTH------Y-----QVVLTGTAE---QVRLSGLPDGDWLAFTLPV 248 (256)
Q Consensus 209 ~y~rpeqt~h~------~-----ev~kt~~~~---~~~~~~i~~~~~v~f~~~~ 248 (256)
||+||++--++ . |||.+.+.. +..++-|+|+|-|..+..+
T Consensus 80 Wy~R~~EiP~~k~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~ 133 (163)
T 4dov_A 80 WFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPE 133 (163)
T ss_dssp EEEEGGGSCTTTGGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTT
T ss_pred eeechhhccccchhhccCCCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCc
Confidence 99999965222 1 999988884 8999999999999887544
No 84
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=56.21 E-value=47 Score=22.95 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHHhcc---cccHHHHHHHhhcC
Q psy1225 40 LTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEN---PRSLLTIGKTLKSG 110 (256)
Q Consensus 40 ~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~~~S~i~~~A~~L~~~f~~~~~kl---P~dl~~I~~kl~~~ 110 (256)
.-|...+.+|.|.|.+|+++|.-..+..-.. ....|+..+..-...- |.|...+..+++..
T Consensus 16 ~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~----------~l~~Lr~~l~~G~~Sg~~~~~d~d~v~a~~~~~ 79 (88)
T 3kxe_C 16 AFIDSQVADGRYGSASEVIRAGLRLLEENEA----------KLAALRAALIEGEESGFIEDFDFDAFIEERSRA 79 (88)
T ss_dssp HHHHHHHTTTSCSSHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHTCEESSCCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 4688999999999999999998777765321 1223444443333221 67777777766543
No 85
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=31.46 E-value=1.1 Score=24.67 Aligned_cols=22 Identities=18% Similarity=0.082 Sum_probs=18.1
Q ss_pred cccCCCCCCceeeeeecccccC
Q psy1225 231 VRLSGLPDGDWLAFTLPVVSGK 252 (256)
Q Consensus 231 ~~~~~i~~~~~v~f~~~~~~g~ 252 (256)
|-+.-|+..|.|.+|+.|.|-|
T Consensus 6 ~iia~visGcivalF~hWL~~r 27 (30)
T 4b19_A 6 HIIAPVISGCAIAFFSYWLSRR 27 (30)
T ss_dssp SSTTTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 4556788899999999998865
No 86
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=30.70 E-value=52 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q psy1225 101 LTIGKTLKSGHYSTLNELTGELNLMFEN 128 (256)
Q Consensus 101 ~~I~~kl~~~~Y~s~~~f~~D~~lmf~N 128 (256)
.-|...+.+|.|.|.+|.+.|.-..+..
T Consensus 16 ~~i~~~V~sG~Y~s~SEviR~~lR~l~~ 43 (88)
T 3kxe_C 16 AFIDSQVADGRYGSASEVIRAGLRLLEE 43 (88)
T ss_dssp HHHHHHHTTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999997666544
No 87
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=21.01 E-value=76 Score=23.69 Aligned_cols=32 Identities=9% Similarity=0.248 Sum_probs=26.3
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 129 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na 129 (256)
||. +.|..+|+.+.+.|+++|-..+.+-..|-
T Consensus 30 pIP-~qIAdkLRGr~F~sFd~FR~afW~eVs~D 61 (131)
T 2jb0_B 30 PVP-DRIANKLRDKEFKSFDDFRKKFWEEVSKD 61 (131)
T ss_dssp ECB-HHHHHHHTTCEESSHHHHHHHHHHHHHHC
T ss_pred CCC-HHHHHHHcCCcCCCHHHHHHHHHHHHhcC
Confidence 443 57999999999999999999998865553
No 88
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=20.82 E-value=77 Score=23.76 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=26.5
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh
Q psy1225 97 PRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 129 (256)
Q Consensus 97 P~dl~~I~~kl~~~~Y~s~~~f~~D~~lmf~Na 129 (256)
||. +.|..+|+.+.+.|+++|-..+.+-..|-
T Consensus 33 pIP-~~IAdkLRGr~F~sFd~FR~afW~eVs~D 64 (134)
T 1fr2_B 33 PIP-DRIADKLRDKEFKSFDDFRKAVWEEVSKD 64 (134)
T ss_dssp ECB-HHHHHHHTTCEESSHHHHHHHHHHHHHHC
T ss_pred CCC-HHHHHHhcCCcCCCHHHHHHHHHHHHhcC
Confidence 444 57999999999999999999998866553
Done!