RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1225
(256 letters)
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all
alpha protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 112 bits (283), Expect = 7e-32
Identities = 29/93 (31%), Positives = 54/93 (58%)
Query: 7 QTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFE 66
+ G LSE F++LP+++ P+YY +I+ P I + +++ Y +L +L ++ L+
Sbjct: 30 DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89
Query: 67 NAKKFNPADSRLYRDAVKLQKLMQRKVQENPRS 99
NA+ FN S++Y D++ LQ + + Q P S
Sbjct: 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGPSS 122
Score = 72.4 bits (178), Expect = 2e-16
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154
P I + +++ Y +L +L ++ L+ NA+ FN S++Y D++ LQ + +
Sbjct: 57 RKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSAR 116
Query: 155 QEF 157
Q
Sbjct: 117 QSG 119
Score = 48.5 bits (116), Expect = 1e-07
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQE 200
++ +++ SL +L ++ L+ NA+ FN ++Y D++ LQ + + Q
Sbjct: 65 IKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQS 118
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo01D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.20A {Homo
sapiens}
Length = 130
Score = 112 bits (282), Expect = 1e-31
Identities = 43/90 (47%), Positives = 61/90 (67%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+G ++EPF LP+K+ PDYY+ IK P SL I LK+ Y TL+ L +LNLMFENA
Sbjct: 36 QGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENA 95
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQENPR 98
K++N +S +Y+ +KLQ++MQ K +E R
Sbjct: 96 KRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125
Score = 74.7 bits (184), Expect = 3e-17
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P SL I LK+ Y TL+ L +LNLMFENAK++N +S +Y+ +KLQ++MQ K +
Sbjct: 62 MPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKK 121
Query: 156 EFSLNE 161
E + +
Sbjct: 122 ELARRD 127
Score = 50.1 bits (120), Expect = 3e-08
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
+L+ L +L+LMFENAK++N + +Y+ +KLQ++MQ K +E+
Sbjct: 80 TLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent
small and homeotic disks prote homolog, lysine
N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Length = 126
Score = 110 bits (278), Expect = 4e-31
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
L+ P L LP K+ N DYY I +P L+TI K + +G+Y T+ ++ +F NA
Sbjct: 28 SRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQENP 97
+K+ S + RD +L+K E
Sbjct: 88 EKYYGRKSPVGRDVCRLRKAYYNARHEAS 116
Score = 74.3 bits (183), Expect = 3e-17
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
+P L+TI K + +G+Y T+ ++ +F NA+K+ S + RD +L+K
Sbjct: 54 DPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARH 113
Query: 156 EFS--LNELTGE 165
E S ++E+ GE
Sbjct: 114 EASAQIDEIVGE 125
Score = 47.7 bits (114), Expect = 2e-07
Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
+++++ ++ ++ +F NA+K+ + RD +L+K E
Sbjct: 61 IEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEA 115
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 115 bits (289), Expect = 8e-31
Identities = 37/229 (16%), Positives = 91/229 (39%), Gaps = 32/229 (13%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+ ++ + F+KLP+++++P YY I+ P S+ I K+ + + ++ L+ +N
Sbjct: 43 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEI-KSRDYEYEDGPSNFLLDVELLTKNC 101
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQENPRSLLTIG-------KTLKSGHYSTLNELTGE 121
+ +N DS + ++++++ L++ +V + K L +
Sbjct: 102 QAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKI 161
Query: 122 LNLMFENAKKFNPADSRL----------------YRDAVK----LQKLMQRKVQEF---S 158
+ + N D Y + V L +++ ++
Sbjct: 162 NQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSI-VKQNLEIGQYSK 220
Query: 159 LNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDIE 207
+ + ++ L+F+NA FN +Y+DA L +Q+ +++
Sbjct: 221 IYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPELQ 269
Score = 110 bits (275), Expect = 8e-29
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGE 60
KN + LSEPF++L K P+YY I+ +P +L + + L+ G YS + + +
Sbjct: 168 ASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIID 227
Query: 61 LNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQENP 97
+ L+F+NA FN + +Y+DA L +Q+
Sbjct: 228 MLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEF 264
Score = 36.6 bits (84), Expect = 0.004
Identities = 8/74 (10%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 150 MQRKVQEF--SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDIE 207
++ + E+ + ++ L+ +N + +N D + ++++++ L++ +V + L
Sbjct: 76 IKSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRN 135
Query: 208 CQVYLISDELTHYQ 221
+ +
Sbjct: 136 YLINSEVKAKLLHY 149
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; 1.63A {Homo sapiens}
Length = 116
Score = 109 bits (275), Expect = 8e-31
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+G L E F++ P +R PDYY ++ P L+ I + LK Y +N LT + L+F NA
Sbjct: 24 QGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQE 95
K + DS Y+ A KL L R E
Sbjct: 84 KSYYKPDSPEYKAACKLWDLYLRTRNE 110
Score = 72.0 bits (177), Expect = 2e-16
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P L+ I + LK Y +N LT + L+F NAK + DS Y+ A KL L R
Sbjct: 50 QPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRN 109
Query: 156 EF 157
EF
Sbjct: 110 EF 111
Score = 50.8 bits (122), Expect = 1e-08
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
+Q+K++ +N LT + L+F NAK + D Y+ A KL L R E +
Sbjct: 57 IQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFV 112
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1,
chromatin remodelling, acely-lysine binding,
protein-protein interactions; 1.50A {Homo sapiens} PDB:
3uvd_A 2h60_A
Length = 129
Score = 109 bits (274), Expect = 2e-30
Identities = 30/105 (28%), Positives = 60/105 (57%)
Query: 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGE 60
+ K+ + G LSE F++LP+++ P+YY +I+ P I + +++ Y +LN+L +
Sbjct: 23 VIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKD 82
Query: 61 LNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQENPRSLLTIGK 105
+ L+ +NA+ FN S +Y D++ LQ + Q+ + + G+
Sbjct: 83 VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGE 127
Score = 69.7 bits (171), Expect = 2e-15
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154
P I + +++ Y +LN+L ++ L+ +NA+ FN S +Y D++ LQ +
Sbjct: 56 RKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVR 115
Query: 155 QE 156
Q+
Sbjct: 116 QK 117
Score = 49.3 bits (118), Expect = 5e-08
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 89 MQRKVQENPRSLLTIGKTLKSGHYSTLNELTG-ELNLMFENAKKFNPADSRL---YRDAV 144
M K+ NP +L K + + +G +L+ +F + Y + +
Sbjct: 1 MAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQ-----LPSRKELPEYYELI 55
Query: 145 K----LQKLMQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRK 197
+ +K ++ +++ SLN+L ++ L+ +NA+ FN +Y D++ LQ +
Sbjct: 56 RKPVDFKK-IKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 114
Query: 198 VQEVM 202
Q++
Sbjct: 115 RQKIE 119
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing,
bromodomain, chromatin RE DNA-binding, nucleus,
phosphoprotein, transcription; 1.50A {Homo sapiens} PDB:
2ktb_B* 3hmf_A
Length = 120
Score = 108 bits (272), Expect = 2e-30
Identities = 32/87 (36%), Positives = 55/87 (63%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
G +SE F KLP+K PDYY IIK P L TI + +++G Y +++ + +++L+ +NA
Sbjct: 27 SGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNA 86
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQE 95
K +N S++++DA ++K+ K E
Sbjct: 87 KTYNEPGSQVFKDANSIKKIFYMKKAE 113
Score = 72.8 bits (179), Expect = 1e-16
Identities = 18/67 (26%), Positives = 41/67 (61%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P L TI + +++G Y +++ + +++L+ +NAK +N S++++DA ++K+ K
Sbjct: 53 EPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKA 112
Query: 156 EFSLNEL 162
E +E+
Sbjct: 113 EIEHHEM 119
Score = 48.1 bits (115), Expect = 1e-07
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
S++ + ++ L+ +NAK +N ++++DA ++K+ K E+
Sbjct: 71 SIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 108 bits (271), Expect = 5e-30
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
G LS FL+LP++ PDYY IK P + I + + Y ++ + + +MF NA
Sbjct: 34 RGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNA 93
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQE 95
+N +S +Y+DA+ L K++ ++
Sbjct: 94 CTYNEPESLIYKDALVLHKVLLETRRD 120
Score = 71.2 bits (175), Expect = 5e-16
Identities = 14/62 (22%), Positives = 31/62 (50%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P + I + + Y ++ + + +MF NA +N +S +Y+DA+ L K++ +
Sbjct: 60 KPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRR 119
Query: 156 EF 157
+
Sbjct: 120 DL 121
Score = 48.1 bits (115), Expect = 1e-07
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQE 200
++ + + +MF NA +N + +Y+DA+ L K++ ++
Sbjct: 78 DIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRD 120
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 106 bits (267), Expect = 3e-29
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGE 60
+ + G L + F+ P+K+ PDYY+II P L I +++ Y+ + +
Sbjct: 36 VLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIED 95
Query: 61 LNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQENP 97
+ LMF NA+ +N S++Y DA L+KL++ K +E
Sbjct: 96 MKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELG 132
Score = 69.8 bits (171), Expect = 4e-15
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P L I +++ Y+ + ++ LMF NA+ +N S++Y DA L+KL++ K +
Sbjct: 70 EPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRK 129
Query: 156 EF 157
E
Sbjct: 130 EL 131
Score = 47.1 bits (112), Expect = 5e-07
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
+ ++ LMF NA+ +N ++Y DA L+KL++ K +E+
Sbjct: 88 GEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKEL 131
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 111 bits (279), Expect = 5e-29
Identities = 36/229 (15%), Positives = 90/229 (39%), Gaps = 32/229 (13%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
+ ++ + F+KLP+++++P YY I+ P S+ I K+ + + ++ L+ +N
Sbjct: 93 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEI-KSRDYEYEDGPSNFLLDVELLTKNC 151
Query: 69 KKFNPADSRLYRDAVKLQKLMQR-------KVQENPRSLLTIGKTLKSGHYSTLNELTGE 121
+ +N DS + ++++++ L++ + + K L +
Sbjct: 152 QAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKI 211
Query: 122 LNLMFENAKKFNPADSRL----------------YRDAVK----LQKLMQRKVQE---FS 158
+ + N D Y + V L +++ ++
Sbjct: 212 NQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSI-VKQNLEIGQYSK 270
Query: 159 LNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDIE 207
+ + ++ L+F+NA FN +Y+DA L +Q+ +++
Sbjct: 271 IYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPELQ 319
Score = 108 bits (271), Expect = 7e-28
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 1 MRPQKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGE 60
KN + LSEPF++L K P+YY I+ +P +L + + L+ G YS + + +
Sbjct: 218 ASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIID 277
Query: 61 LNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQENP 97
+ L+F+NA FN + +Y+DA L +Q+
Sbjct: 278 MLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEF 314
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 110 bits (275), Expect = 5e-29
Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 18/206 (8%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PF + DYY+II P L T+ + ++ Y + E L L+ +N+ +N
Sbjct: 65 TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 124
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFN 133
L + + + L K++E L + K + + K
Sbjct: 125 PKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMA 184
Query: 134 PADSRLYRDAVKLQKL---------------MQRKVQE---FSLNELTGELSLMFENAKK 175
DS + V + + +++ + + S +++L+ N+ K
Sbjct: 185 VPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 244
Query: 176 FNPADLRLYRDAVKLQKLMQRKVQEV 201
+N + + + A ++ + + + E
Sbjct: 245 YNGPESQYTKTAQEIVNVCYQTLTEY 270
Score = 102 bits (254), Expect = 5e-26
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 188 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 247
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNE 117
+S+ + A ++ + + + E L + K + + + L E
Sbjct: 248 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEE 291
Score = 72.0 bits (176), Expect = 5e-15
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ +
Sbjct: 205 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 264
Query: 152 RKVQEFS--LNELTGELSLMFENAKK 175
+ + E+ L +L ++ E A +
Sbjct: 265 QTLTEYDEHLTQLEKDICTAKEAALE 290
Score = 36.1 bits (83), Expect = 0.007
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDI 206
++ V++ S E L L+ +N+ +N L + + + L K++E
Sbjct: 93 LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLA 152
Query: 207 ECQVYLISDELTHYQVVLTGTAEQVRLSGLP-DGDWLAFTLPV 248
+ + QV + + + + D F PV
Sbjct: 153 RLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPV 195
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 109 bits (273), Expect = 6e-29
Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 18/206 (8%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PF + DYY+II P L T+ + ++ Y + E L L+ +N+ +N
Sbjct: 32 TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFN 133
L + + + L K++E L + K + + K
Sbjct: 92 PKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMA 151
Query: 134 PADSRLYRDAVKLQKL---------------MQRKVQEF---SLNELTGELSLMFENAKK 175
DS + V + + +++ + + S +++L+ N+ K
Sbjct: 152 VPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 211
Query: 176 FNPADLRLYRDAVKLQKLMQRKVQEV 201
+N + + + A ++ + + + E
Sbjct: 212 YNGPESQYTKTAQEIVNVCYQTLTEY 237
Score = 101 bits (254), Expect = 4e-26
Identities = 29/108 (26%), Positives = 52/108 (48%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 155 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 214
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGE 121
+S+ + A ++ + + + E L + K + + + L E E
Sbjct: 215 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEAELE 262
Score = 72.7 bits (178), Expect = 2e-15
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ +
Sbjct: 172 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 231
Query: 152 RKVQEFS--LNELTGELSLMFENAKK 175
+ + E+ L +L ++ E A +
Sbjct: 232 QTLTEYDEHLTQLEKDICTAKEAALE 257
Score = 34.5 bits (79), Expect = 0.023
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDI 206
++ V++ S E L L+ +N+ +N L + + + L K++E
Sbjct: 60 LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLA 119
Query: 207 ECQ 209
+
Sbjct: 120 RLE 122
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 121
Score = 90.1 bits (224), Expect = 4e-23
Identities = 25/97 (25%), Positives = 43/97 (44%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
F + PDY IK P T+ + L++ Y ++ + NL+ N K+N
Sbjct: 25 GNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSG 110
D+ YR AV+L++ +++ R +G SG
Sbjct: 85 KDTIFYRAAVRLREQGGAVLRQARRQAEKMGSGPSSG 121
Score = 62.0 bits (151), Expect = 1e-12
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P T+ + L++ Y ++ + NL+ N K+N D+ YR AV+L++ ++
Sbjct: 46 KPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLR 105
Query: 156 E 156
+
Sbjct: 106 Q 106
Score = 44.3 bits (105), Expect = 3e-06
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
M++ ++ + ++ + +L+ N K+N D YR AV+L++ +++
Sbjct: 53 MKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQA 107
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Length = 147
Score = 88.8 bits (220), Expect = 3e-22
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 9 EGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENA 68
EG S+ ++PA P++ K P + I K +++ Y L+ + + E A
Sbjct: 26 EGRCYSDSLAEIPAVD--PNFP--NKPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQE 95
++ N DS +Y DAV+LQ+ + E
Sbjct: 82 RRMNRTDSEIYEDAVELQQFFIKIRDE 108
Score = 72.2 bits (177), Expect = 4e-16
Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 56 ELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK---VQENPRSLLTIGKTLKSGHY 112
+ ++ +F + + R Y D+ L ++ + P + I K +++ Y
Sbjct: 7 LIQELIHNLFVSVMSHQDDEGRCYSDS--LAEIPAVDPNFPNKPPLTFDIIRKNVENNRY 64
Query: 113 STLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFSLNELTGELSLMFEN 172
L+ + + E A++ N DS +Y DAV+LQ+ + EL ++
Sbjct: 65 RRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRD-----ELCKNGEILLSP 119
Query: 173 AKKFNPADLRLYRDAVKLQKLMQRKVQE 200
A + L + + +KL + ++
Sbjct: 120 ALSYTTKHLHNDVEKERKEKLPKEIEED 147
Score = 43.7 bits (103), Expect = 9e-06
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
L+ + + E A++ N D +Y DAV+LQ+ + E+
Sbjct: 66 RLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDEL 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 89.2 bits (221), Expect = 3e-22
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PFL+ PDYY +IK P L T+ + ++ +Y L E ++ +F+N + +NP
Sbjct: 90 AWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNP 149
Query: 74 ADSRLYRDAVKLQKLMQRKVQENP 97
+DS Y+ A L+ +K++
Sbjct: 150 SDSPFYQCAEVLESFFVQKLKGFK 173
Score = 66.4 bits (162), Expect = 1e-13
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
V + P L T+ + ++ +Y L E ++ +F+N + +NP+DS Y+ A L+
Sbjct: 107 GVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFV 166
Query: 152 RKVQEF 157
+K++ F
Sbjct: 167 QKLKGF 172
Score = 44.9 bits (106), Expect = 4e-06
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQE 200
M+ +VQ L E +++ +F+N + +NP+D Y+ A L+ +K++
Sbjct: 118 MEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKG 171
>3d7c_A General control of amino acid synthesis protein 5; GCN5,
bromodomain, structural genomics consortium, SGC,
HOST-virus interaction, nucleus; 2.06A {Homo sapiens}
SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A*
1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Length = 112
Score = 87.0 bits (216), Expect = 5e-22
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PF++ K PDYY +I+ P L T+ + L+S +Y T +L + N +++NP
Sbjct: 25 AWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 84
Query: 74 ADSRLYRDAVKLQKLMQRKVQE 95
DS R A L+K K++E
Sbjct: 85 PDSEYCRCASALEKFFYFKLKE 106
Score = 64.6 bits (158), Expect = 1e-13
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+V P L T+ + L+S +Y T +L + N +++NP DS R A L+K
Sbjct: 42 EVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFY 101
Query: 152 RKVQEFSL 159
K++E L
Sbjct: 102 FKLKEGGL 109
Score = 46.1 bits (110), Expect = 6e-07
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILD 205
M +++ + +L + N +++NP D R A L+K K++E ++D
Sbjct: 53 MTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKEGGLID 111
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 86.2 bits (214), Expect = 1e-21
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PFL+ + Y P+YY+IIK P + ++ K L G Y T E ++ MF N +K+N
Sbjct: 34 SWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93
Query: 74 ADSRLYRDAVKLQKLMQRKVQEN 96
S + + L++ R + ++
Sbjct: 94 ESSEYTKMSDNLERCFHRAMMKH 116
Score = 60.0 bits (146), Expect = 5e-12
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P + ++ K L G Y T E ++ MF N +K+N S + + L++ R +
Sbjct: 55 APMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMM 114
Query: 156 E 156
+
Sbjct: 115 K 115
Score = 41.2 bits (97), Expect = 4e-05
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 150 MQRKVQEF---SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQE 200
M++K+ + E ++ MF N +K+N + + L++ R + +
Sbjct: 62 MEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain,
histone binding, N-acetyl lysine; HET: ALY; 1.87A
{Saccharomyces cerevisiae} SCOP: a.29.2.1
Length = 121
Score = 85.1 bits (211), Expect = 3e-21
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PFL+ K PDYY IK P L T+ L+S Y + + + L+F N + +N
Sbjct: 31 AWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNG 90
Query: 74 ADSRLYRDAVKLQKLMQRKVQENP 97
++ Y+ A +L+K KV+E P
Sbjct: 91 ENTSYYKYANRLEKFFNNKVKEIP 114
Score = 61.6 bits (150), Expect = 2e-12
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+ P L T+ L+S Y + + + L+F N + +N ++ Y+ A +L+K
Sbjct: 48 DFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFN 107
Query: 152 RKVQEF 157
KV+E
Sbjct: 108 NKVKEI 113
Score = 42.7 bits (101), Expect = 1e-05
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
M+ K++ + + + L+F N + +N + Y+ A +L+K KV+E+
Sbjct: 59 MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 113
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1
(TAF1); structural genomics consortium, SGC; 1.89A {Homo
sapiens} PDB: 3hmh_A
Length = 158
Score = 84.9 bits (210), Expect = 9e-21
Identities = 29/108 (26%), Positives = 52/108 (48%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 48 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGE 121
+S+ + A ++ + + + E L + K + + + L E E
Sbjct: 108 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEAELE 155
Score = 60.6 bits (147), Expect = 1e-11
Identities = 20/90 (22%), Positives = 39/90 (43%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ +
Sbjct: 65 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 124
Query: 152 RKVQEFSLNELTGELSLMFENAKKFNPADL 181
+ + E+ + E + A+L
Sbjct: 125 QTLTEYDEHLTQLEKDICTAKEAALEEAEL 154
Score = 41.4 bits (97), Expect = 5e-05
Identities = 7/56 (12%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 150 MQRKVQEF---SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
+++ + + S +++L+ N+ K+N + + + A ++ + + + E
Sbjct: 76 IRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131
>3rcw_A Bromodomain-containing protein 1; transcription, structural
genomics, structural consortium, SGC; 2.21A {Homo
sapiens}
Length = 135
Score = 83.6 bits (207), Expect = 1e-20
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ F + + + PDY IK+P T+ K L++ Y L+E + +L+ +N K+N
Sbjct: 31 ARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSG 110
D+ YR AV+L+ +++ R + +IG SG
Sbjct: 91 RDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASG 127
Score = 60.1 bits (146), Expect = 8e-12
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
++P T+ K L++ Y L+E + +L+ +N K+N D+ YR AV+L+
Sbjct: 48 DHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGG 107
Query: 152 RKVQEF 157
+++
Sbjct: 108 VVLRQA 113
Score = 41.3 bits (97), Expect = 5e-05
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
M+++++ +L+E + L+ +N K+N D YR AV+L+ +++
Sbjct: 59 MRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQA 113
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 83.1 bits (206), Expect = 1e-20
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 14 SEPFLKLP--AKRYN-PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKK 70
S PF + P + PDY+ I+KNP L TI + L +G Y + ++ LMF NA
Sbjct: 30 SLPFRQ-PVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWL 88
Query: 71 FNPADSRLYRDAVKLQKLMQRKVQENPRSL 100
+N SR+Y+ KL ++ ++++ +SL
Sbjct: 89 YNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118
Score = 60.4 bits (147), Expect = 5e-12
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154
+NP L TI + L +G Y + ++ LMF NA +N SR+Y+ KL ++ ++++
Sbjct: 52 KNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEI 111
Query: 155 QEF 157
Sbjct: 112 DPV 114
Score = 41.1 bits (97), Expect = 4e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 168 LMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
LMF NA +N R+Y+ KL ++ ++++ VM
Sbjct: 81 LMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 84.6 bits (209), Expect = 3e-20
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKS--GHYSTLNELTGELNLMFENAKKF 71
S F P PDYY+IIKNP L TI K L+ YS + + L+F+N +F
Sbjct: 99 SLAFQD-PVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEF 157
Query: 72 NPADSRLYRDAVKLQKLMQRKVQENP 97
N DS + +KL+ + ++
Sbjct: 158 NEPDSEVANAGIKLENYFEELLKNLY 183
Score = 42.3 bits (99), Expect = 3e-05
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 147 QKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
++L + + + L+F+N +FN D + +KL+ + ++ +
Sbjct: 128 KRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
bundle, transcription; NMR {Homo sapiens}
Length = 117
Score = 82.4 bits (204), Expect = 3e-20
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S F P Y IIK+P T+ + +K+ Y ++ EL LM NA +N
Sbjct: 26 SAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLL 101
++ Y+ A KL + + +
Sbjct: 86 PETIYYKAAKKLLHSGMKILSQERLEHH 113
Score = 62.3 bits (152), Expect = 9e-13
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
+P T+ + +K+ Y ++ EL LM NA +N ++ Y+ A KL + +
Sbjct: 47 HPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILS 106
Query: 156 EFSLNEL 162
+ L
Sbjct: 107 QERLEHH 113
Score = 42.3 bits (100), Expect = 2e-05
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 150 MQRKVQEF---SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQE 200
M+ K++ S+ EL LM NA +N + Y+ A KL + + +
Sbjct: 54 MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQ 107
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A {Homo
sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A*
3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A*
3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A*
2nxb_A ...
Length = 127
Score = 82.0 bits (203), Expect = 6e-20
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 14 SEPFLK--LPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKF 71
+ PF + K PDYY+IIK P + TI K L++ +Y E + N MF N +
Sbjct: 39 AWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98
Query: 72 NPADSRLYRDAVKLQKLMQRKVQENP 97
N + A L+KL +K+ E P
Sbjct: 99 NKPGDDIVLMAEALEKLFLQKINELP 124
Score = 59.2 bits (144), Expect = 1e-11
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P + TI K L++ +Y E + N MF N +N + A L+KL +K+
Sbjct: 62 TPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121
Query: 156 EF 157
E
Sbjct: 122 EL 123
Score = 40.4 bits (95), Expect = 8e-05
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
++++++ ++ E + + MF N +N + A L+KL +K+ E+
Sbjct: 69 IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
isoform 1, LAVS3040, rhabdomyosarcoma antigen
MU-RMS-40.8; 2.23A {Homo sapiens}
Length = 123
Score = 80.5 bits (199), Expect = 2e-19
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
F P Y IIK+P T+ + + Y ++ E + LM +NA +N
Sbjct: 31 HGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90
Query: 74 ADSRLYRDAVKLQKLMQRKVQE 95
D+ Y+ A K+ + + +
Sbjct: 91 PDTVYYKLAKKILHAGFKMMSK 112
Score = 63.1 bits (154), Expect = 5e-13
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
+P T+ + + Y ++ E + LM +NA +N D+ Y+ A K+ + +
Sbjct: 52 HPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMS 111
Query: 156 EFSLNELTGELS 167
+ L L +S
Sbjct: 112 KERLLALKRSMS 123
Score = 43.9 bits (104), Expect = 4e-06
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDI 206
M+ K+ S+ E + LM +NA +N D Y+ A K+ + + + +L +
Sbjct: 59 MKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKERLLAL 118
Query: 207 E 207
+
Sbjct: 119 K 119
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 80.0 bits (198), Expect = 2e-19
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PFL + P Y ++IK P TI + L SG Y L ++ L+F+N + FN
Sbjct: 31 AWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPR 98
DS + R ++K ++K + +
Sbjct: 91 DDSDIGRAGHNMRKYFEKKWTDTFK 115
Score = 58.5 bits (142), Expect = 3e-11
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV + P TI + L SG Y L ++ L+F+N + FN DS + R ++K +
Sbjct: 48 KVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFE 107
Query: 152 RKVQEF 157
+K +
Sbjct: 108 KKWTDT 113
Score = 40.4 bits (95), Expect = 8e-05
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
++ K+ +L ++ L+F+N + FN D + R ++K ++K +
Sbjct: 59 IREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 81.1 bits (200), Expect = 3e-19
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 14 SEPFLKL--PAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKF 71
F KL K+ PDYY +IKNP S I LK G Y+ +E ++ L+F+N +
Sbjct: 39 GHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLY 98
Query: 72 NPADSRLYRDAVKLQKLMQRKVQENPRS 99
N ++S + ++ ++ +
Sbjct: 99 NTSNSVVAITGKNIETYFNNQLIVMGYN 126
Score = 60.3 bits (146), Expect = 2e-11
Identities = 16/91 (17%), Positives = 38/91 (41%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
NP S I LK G Y+ +E ++ L+F+N +N ++S + ++ ++
Sbjct: 62 NPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLI 121
Query: 156 EFSLNELTGELSLMFENAKKFNPADLRLYRD 186
N + + + K +++ ++
Sbjct: 122 VMGYNNFILKEKKINDMLKLVEEENIKWSKE 152
Score = 37.1 bits (86), Expect = 0.002
Identities = 6/55 (10%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
++ K+++ +E ++ L+F+N +N ++ + ++ ++ +
Sbjct: 69 IKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVM 123
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 80.5 bits (199), Expect = 3e-19
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 14 SEPFLK--LPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKF 71
+ PF + K PDY++IIK P + TI + L++ +Y +E + N MF N +
Sbjct: 50 AWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIY 109
Query: 72 NPADSRLYRDAVKLQKLMQRKVQENPRS 99
N + A L+K+ +KV P+
Sbjct: 110 NKPTDDIVLMAQTLEKIFLQKVASMPQE 137
Score = 58.2 bits (141), Expect = 6e-11
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
P + TI + L++ +Y +E + N MF N +N + A L+K+ +KV
Sbjct: 73 QPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVA 132
Query: 156 EF 157
Sbjct: 133 SM 134
Score = 40.9 bits (96), Expect = 9e-05
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
++R+++ ++ +E + + MF N +N + A L+K+ +KV +
Sbjct: 80 IKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMP 135
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural
genomics, NPPSFA; 2.50A {Homo sapiens}
Length = 135
Score = 79.7 bits (197), Expect = 4e-19
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKS--GHYSTLNELTGELNLMFENAKKF 71
S F P PDYY+IIKNP L TI K L+ YS + + L+F+N +F
Sbjct: 38 SLAFQD-PVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEF 96
Query: 72 NPADSRLYRDAVKLQKLMQRKVQENP 97
N DS + +KL+ + ++
Sbjct: 97 NEPDSEVANAGIKLENYFEELLKNLY 122
Score = 55.1 bits (133), Expect = 6e-10
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 96 NPRSLLTIGKTLKS--GHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRK 153
NP L TI K L+ YS + + L+F+N +FN DS + +KL+ +
Sbjct: 58 NPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEEL 117
Query: 154 VQEFSLNE 161
++ +
Sbjct: 118 LKNLYPEK 125
Score = 40.8 bits (96), Expect = 7e-05
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 147 QKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
++L + + + L+F+N +FN D + +KL+ + ++ +
Sbjct: 67 KRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 121
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 78.9 bits (195), Expect = 7e-19
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 12 NLSEPFLKL--PAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAK 69
+ PF K DY IIK+P + TI L++ Y E ++ LMF N
Sbjct: 41 AYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCY 100
Query: 70 KFNPADSRLYRDAVKLQKLMQRKVQENP 97
K+NP D + A KLQ + + + + P
Sbjct: 101 KYNPPDHEVVAMARKLQDVFEMRFAKMP 128
Score = 58.1 bits (141), Expect = 5e-11
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
+P + TI L++ Y E ++ LMF N K+NP D + A KLQ + + +
Sbjct: 66 HPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFA 125
Query: 156 EF 157
+
Sbjct: 126 KM 127
Score = 38.5 bits (90), Expect = 4e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 168 LMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
LMF N K+NP D + A KLQ + + + ++
Sbjct: 94 LMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 77.7 bits (192), Expect = 2e-18
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 12 NLSEPFLKL--PAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAK 69
+ PF K DY IIK+P + TI L+S Y E ++ LMF N
Sbjct: 28 AYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCY 87
Query: 70 KFNPADSRLYRDAVKLQKLMQRKVQENP 97
K+NP D + A KLQ + + + + P
Sbjct: 88 KYNPPDHEVVAMARKLQDVFEMRFAKMP 115
Score = 57.3 bits (139), Expect = 6e-11
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 96 NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQ 155
+P + TI L+S Y E ++ LMF N K+NP D + A KLQ + + +
Sbjct: 53 HPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFA 112
Query: 156 EF 157
+
Sbjct: 113 KM 114
Score = 38.4 bits (90), Expect = 4e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 168 LMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
LMF N K+NP D + A KLQ + + + ++
Sbjct: 81 LMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 114
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 78.2 bits (193), Expect = 2e-18
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 14 SEPFLKLPAKRYN-PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFN 72
SEPF + P PDY II P T+ +TL++G+Y + EL ++ L+F N+K +
Sbjct: 39 SEPFRQ-PVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97
Query: 73 PAD-SRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLK 108
P+ SR+Y +++L + + + + K
Sbjct: 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHK 134
Score = 55.5 bits (134), Expect = 4e-10
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 91 RKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD-SRLYRDAVKLQKL 149
R + + P T+ +TL++G+Y + EL ++ L+F N+K + P+ SR+Y +++L
Sbjct: 55 RDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAF 114
Query: 150 MQRKVQE 156
+ +
Sbjct: 115 FEEHISS 121
Score = 37.4 bits (87), Expect = 0.001
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 158 SLNELTGELSLMFENAKKFNPADL-RLYRDAVKLQKLMQRKVQEVM 202
S EL ++ L+F N+K + P+ R+Y +++L + + V+
Sbjct: 78 SPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVL 123
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 77.0 bits (190), Expect = 4e-18
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
SEPF + PDY II P T+ +TL +G+Y + E ++ L+F NAK + P
Sbjct: 28 SEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTP 87
Query: 74 AD-SRLYRDAVKLQKLMQRKVQENPRSL 100
S++Y ++L L + K+++
Sbjct: 88 NKRSKIYSMTLRLSALFEEKMKKISSDF 115
Score = 56.2 bits (136), Expect = 1e-10
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 91 RKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD-SRLYRDAVKLQKL 149
R + + P T+ +TL +G+Y + E ++ L+F NAK + P S++Y ++L L
Sbjct: 44 RDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSAL 103
Query: 150 MQRKVQEFSLNELTGELSLMFENAKKFN 177
+ K+++ S + F+ +KFN
Sbjct: 104 FEEKMKKISSD---------FKIGQKFN 122
Score = 38.5 bits (90), Expect = 3e-04
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 150 MQRKVQE---FSLNELTGELSLMFENAKKFNPADL-RLYRDAVKLQKLMQRKVQEVMILD 205
++ + S E ++ L+F NAK + P ++Y ++L L + K+++ + D
Sbjct: 56 VRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKK-ISSD 114
Query: 206 IECQ 209
+
Sbjct: 115 FKIG 118
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear
coregulator cancer-associated Pro2000 protein, two AAA
DOMA containing protein; 1.95A {Homo sapiens} PDB:
3lxj_A
Length = 130
Score = 71.7 bits (176), Expect = 4e-16
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 14 SEPFLKLPA-KRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFN 72
F K P PDY +IK P L ++ + Y T+ + +++L+ NA ++N
Sbjct: 28 FRVFTK-PVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYN 86
Query: 73 PADSRLYRDAVKLQKLMQRKVQENPRSLL 101
P R ++ + L
Sbjct: 87 PDRDPGDRLIRHRACALRDTAYAIIKEEL 115
Score = 55.1 bits (133), Expect = 5e-10
Identities = 13/81 (16%), Positives = 31/81 (38%)
Query: 95 ENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKV 154
+ P L ++ + Y T+ + +++L+ NA ++NP R ++
Sbjct: 48 KQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTA 107
Query: 155 QEFSLNELTGELSLMFENAKK 175
EL + + E ++
Sbjct: 108 YAIIKEELDEDFEQLCEEIQE 128
Score = 35.5 bits (82), Expect = 0.005
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 150 MQRKVQEF---SLNELTGELSLMFENAKKFNP----ADLRLYRDAVKLQKLMQRKVQEVM 202
+ K+ ++ + ++ L+ NA ++NP D + A L+ ++E +
Sbjct: 56 VISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEEL 115
Query: 203 ILDIE 207
D E
Sbjct: 116 DEDFE 120
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 131
Score = 71.3 bits (175), Expect = 6e-16
Identities = 15/75 (20%), Positives = 30/75 (40%)
Query: 27 PDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 86
DY +IK P L T+ + +Y T + +++L+ NA ++NP +
Sbjct: 38 SDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRA 97
Query: 87 KLMQRKVQENPRSLL 101
++ + L
Sbjct: 98 CTLKDTAHAIIAAEL 112
Score = 57.5 bits (139), Expect = 8e-11
Identities = 17/88 (19%), Positives = 36/88 (40%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+V + P L T+ + +Y T + +++L+ NA ++NP + ++
Sbjct: 42 EVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLK 101
Query: 152 RKVQEFSLNELTGELSLMFENAKKFNPA 179
EL E + + E K+ P+
Sbjct: 102 DTAHAIIAAELDPEFNKLCEEIKESGPS 129
Score = 37.1 bits (86), Expect = 0.001
Identities = 6/61 (9%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 150 MQRKVQEF---SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDI 206
+ K+ + + + ++ L+ NA ++NP + ++ ++ ++
Sbjct: 53 VITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAEL 112
Query: 207 E 207
+
Sbjct: 113 D 113
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 68.0 bits (165), Expect = 5e-14
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 15 EPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLK---SGHYSTLNELTGELNLMFENAKKF 71
F + P P+YY+IIK P L T+ K L+ S HY ++ ++ L+F+N ++F
Sbjct: 100 IEFQE-PVPASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERF 158
Query: 72 NPADSRLYRDAVKLQKLMQRK 92
N + A + ++
Sbjct: 159 NEMMKVVQVYADTQEINLKAD 179
Score = 50.3 bits (119), Expect = 1e-07
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 91 RKVQENPRSLLTIGKTLK---SGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQ 147
K+ + P L T+ K L+ S HY ++ ++ L+F+N ++FN + A +
Sbjct: 114 YKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQE 173
Query: 148 KLMQRKVQEFSLNELTGELSLMFEN 172
++ + + + ++L FE+
Sbjct: 174 INLK---ADSEVAQAGKAVALYFED 195
Score = 31.8 bits (71), Expect = 0.13
Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 147 QKLMQRKVQEF-SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRK 197
+KL ++ Q + ++ ++ L+F+N ++FN + A + ++
Sbjct: 128 KKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKAD 179
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 61.5 bits (148), Expect = 8e-12
Identities = 8/76 (10%), Positives = 32/76 (42%)
Query: 20 LPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLY 79
L ++ + + P L + + + G+Y+++ E + ++ + + A + +
Sbjct: 88 LNSRTTSHLLRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIK 147
Query: 80 RDAVKLQKLMQRKVQE 95
+ ++ R+++
Sbjct: 148 KANSMVKSFFIRQMER 163
Score = 57.7 bits (138), Expect = 2e-10
Identities = 9/69 (13%), Positives = 31/69 (44%)
Query: 89 MQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQK 148
+ R Q+ P L + + + G+Y+++ E + ++ + + A + + + ++
Sbjct: 96 LLRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKS 155
Query: 149 LMQRKVQEF 157
R+++
Sbjct: 156 FFIRQMERV 164
Score = 41.9 bits (97), Expect = 6e-05
Identities = 9/80 (11%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 125 MFENAKKFNPADSRLYRDAVKLQKLMQRKVQE---FSLNELTGELSLMFENAKKFNPADL 181
N++ + + + L+ ++RK+ + S+ E + ++ + + A +
Sbjct: 86 ALLNSRTTSHLLRYRQQQPLDLEG-VKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQP 144
Query: 182 RLYRDAVKLQKLMQRKVQEV 201
+ + ++ R+++ V
Sbjct: 145 EIKKANSMVKSFFIRQMERV 164
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 59.1 bits (142), Expect = 5e-11
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 12 NLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLK---SGHYSTLNELTGELNLMFENA 68
P +L + L I L+ S YS+ E ++ MF+
Sbjct: 92 EPCRPLHQLA--TDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQF 149
Query: 69 KKFNPADSRLYRDAVKLQKLMQRKVQE 95
K + + + LQ+ + ++ E
Sbjct: 150 NKLTEDKA-DVQSIIGLQRFFETRMNE 175
Score = 48.7 bits (115), Expect = 3e-07
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 96 NPRSLLTIGKTLK---SGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQR 152
L I L+ S YS+ E ++ MF+ K + + + LQ+ +
Sbjct: 113 GTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKA-DVQSIIGLQRFFET 171
Query: 153 KVQEF 157
++ E
Sbjct: 172 RMNEA 176
Score = 36.4 bits (83), Expect = 0.003
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 146 LQKLMQRKVQEF-SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
+L ++ + S E ++ MF+ K + + LQ+ + ++ E
Sbjct: 121 RARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDK-ADVQSIIGLQRFFETRMNEA 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-07
Identities = 38/265 (14%), Positives = 77/265 (29%), Gaps = 91/265 (34%)
Query: 22 AKRYNPDYY-----RIIK-NPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPAD 75
A + D Y I+ NP +L TI + G + E ++FE
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNL-TIHFGGEKGKR--IRENY--SAMIFETIVDGKLKT 1703
Query: 76 SRLYRDA-VKLQKLMQRKVQENPRSLLT---------------IGKTLKS---------- 109
+++++ + + LL+ + LKS
Sbjct: 1704 EKIFKEINEHSTSYTF----RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 110 -GH----YSTLNELTGELNLMFENAKKFNPADSRLYRDAVKL--Q--KLMQRKVQEFSLN 160
GH Y+ L L ++ E V++ MQ V L
Sbjct: 1760 AGHSLGEYAALASLADVMS--IE--------------SLVEVVFYRGMTMQVAVPRDELG 1803
Query: 161 ELTGELSLMFEN----AKKFNPADLRLYRDAVKLQKLMQRKVQEVMILDIECQV--YLIS 214
++ N A F+ L+ + V ++ + ++ Y +
Sbjct: 1804 R--SNYGMIAINPGRVAASFSQEALQYVVERV------GKRTGWL------VEIVNYNVE 1849
Query: 215 DELTHYQVVLTGTAEQV-RLSGLPD 238
++ Q V G + ++ + +
Sbjct: 1850 NQ----QYVAAGDLRALDTVTNVLN 1870
Score = 34.6 bits (79), Expect = 0.028
Identities = 39/257 (15%), Positives = 76/257 (29%), Gaps = 81/257 (31%)
Query: 36 PRSLLTIGKTLKSGHYSTLNELTG------------ELNLMFEN--AKKFNPADSRLYRD 81
P + I L+ L E T EL F + P+ +
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 82 AVKL------QKLMQRK---------VQENPRSLLTIGKTLKSGHYSTLNELTGELNLMF 126
+ L ++ +QEN +L+ + +K+ Y T +
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN--YITARIMAKR----- 135
Query: 127 ENAKKFNPADSRLYRDAVKLQ-KLM-----QRKVQEFSLNELTGELSLMFENAKKFNPAD 180
++S L+R + +L+ Q ++ EL D
Sbjct: 136 ---PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FEEL----------------RD 175
Query: 181 L-RLYRDAVK-LQKLMQRKVQEVMILDIECQVYLISDELTH-YQVV--LTGTAEQVRLSG 235
L + Y V L K + E++ ++ + T ++ L +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-----FTQGLNILEWLENPSNT----- 225
Query: 236 LPDGDWLA---FTLPVV 249
PD D+L + P++
Sbjct: 226 -PDKDYLLSIPISCPLI 241
Score = 33.9 bits (77), Expect = 0.051
Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 88/226 (38%)
Query: 5 KNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLT---------------IGKTLKS- 48
+ +G +E K ++ Y ++ + LL+ + LKS
Sbjct: 1694 ETIVDGKLKTEKIFK-EINEHSTSY--TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 49 ----------GH----YSTLNELTGELNLMFENA-----------KKFNPADSRLYRD-- 81
GH Y+ L L ++ E+ + P D +
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 82 --AV------------KLQKLMQRKVQENPRSLLTI------GKTL-KSGHYSTLNELTG 120
A+ LQ +++R V + L+ I + +G L+ +T
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVER-VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 121 ELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEFSLNELTGEL 166
LN + +K + + +L + SL E+ G L
Sbjct: 1868 VLNFI--KLQK------------IDIIELQ----KSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 3e-06
Identities = 43/315 (13%), Positives = 87/315 (27%), Gaps = 100/315 (31%)
Query: 13 LSEPFLKLPAKRYNPDYYR----------IIKNP----RSLLTIGKTLKSG--------- 49
+ F+ + D + II + +L L
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 50 -----HYSTL-NELTGELNLMFENAKKFNPADSRLYRDAVKLQKL----------MQRKV 93
+Y L + + E + + RLY D K +++ +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 94 QE-NPRSLLTI------GKT-LKSGHYSTLNELTGELNLMFE----NAKKFNPADSRLYR 141
E P + I GKT + + + F+ N K N ++ L
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-- 199
Query: 142 DAVKLQKLMQRKVQEF-SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRK--- 197
LQKL+ + + S ++ + + L + + +L++L++ K
Sbjct: 200 --EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-------------ELRRLLKSKPYE 244
Query: 198 --------VQEVMIL---DIECQVYLISDELTHYQVVLTGTAEQVRLSGLPDG------- 239
VQ ++ C++ L + + T + L
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 240 ----DWL---AFTLP 247
+L LP
Sbjct: 305 SLLLKYLDCRPQDLP 319
Score = 46.8 bits (110), Expect = 4e-06
Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 34/212 (16%)
Query: 37 RSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSR-LYRDAV--KLQKLMQRKV 93
+ LLT T L+ T + ++ P + + L + + Q L + +
Sbjct: 267 KILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 94 QENPRSLLTIGKTLKSG-----HYSTLNELTGELNLMFENA-KKFNPADSR-LY------ 140
NPR L I ++++ G ++ +N +L + E++ PA+ R ++
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVN--CDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 141 RDAVK-----LQKL---MQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRD----AV 188
+ L + + + +N+L + SL+ + K+ + +Y +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 189 KLQKLMQRKVQEVMILDIECQVYLISDELTHY 220
L + V I LI L Y
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 36.8 bits (84), Expect = 0.006
Identities = 37/279 (13%), Positives = 85/279 (30%), Gaps = 97/279 (34%)
Query: 13 LSEPFLKLPAKRYNPDYYRIIK-NPRSLLTIGKTLKSG-----HYSTLNELTGELNLMFE 66
L LP ++ NPR L I ++++ G ++ +N +L + E
Sbjct: 311 LDCRPQDLPR--------EVLTTNPRRLSIIAESIRDGLATWDNWKHVN--CDKLTTIIE 360
Query: 67 NA-KKFNPADSR-LY------RDAVK-----LQKLMQRKVQENPRSLLT-------IGKT 106
++ PA+ R ++ + L + ++ + ++ + K
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 107 LKSGHYSTLNELTGELNLMFEN--------------AKKFNPAD---------------- 136
K S + + EL + EN K F+ D
Sbjct: 421 PKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 137 --------------SRLYRDAVKLQKLMQRKVQE--FSLNELTGELSLMFENAKKFNPAD 180
++ D + +++K++ + N L+ +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDF----RFLEQKIRHDSTAWNASGSILNTL---------QQ 526
Query: 181 LRLYRDAVKLQK-LMQRKVQEVMILDIECQVYLISDELT 218
L+ Y+ + +R V ++ + + LI + T
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.42
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 14/44 (31%)
Query: 4 QKNQTEGGNLSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLK 47
+K + L + LKL Y D P L I T++
Sbjct: 18 EKQALK--KL-QASLKL----YADD-----SAPA--LAIKATME 47
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 27.6 bits (61), Expect = 4.5
Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 34/182 (18%)
Query: 13 LSEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHY-----STLNELTGELNLMFEN 67
L E +LP Y+ + PR L +GK L G + + +
Sbjct: 3 LDEHCERLP---YDASKWEF---PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVA 56
Query: 68 AKKFNP-ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMF 126
K A +R + K++ + + + +G K G G L ++
Sbjct: 57 VKMLKEGATHSEHRALMSELKILI-HIGHHLNVVNLLGACTKPG---------GPLMVIV 106
Query: 127 ENAKKFNPADSRLYRDAVKLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRD 186
E K N L ++ K EF + G ++ P DL+ D
Sbjct: 107 EFCKFGN------------LSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLD 154
Query: 187 AV 188
++
Sbjct: 155 SI 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.370
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,728,424
Number of extensions: 212243
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 136
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)