RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1225
(256 letters)
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 86.2 bits (213), Expect = 7e-22
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PF + DYY+II P L T+ + ++ Y + E L L+ +N+ +N
Sbjct: 44 TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 103
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLK 108
L + + + L K++E L + K +
Sbjct: 104 PKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAIN 138
Score = 60.4 bits (146), Expect = 3e-12
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
K+ P L T+ + ++ Y + E L L+ +N+ +N L + + + L
Sbjct: 61 KIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCD 120
Query: 152 RKVQEF 157
K++E
Sbjct: 121 EKLKEK 126
Score = 41.1 bits (96), Expect = 2e-05
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 158 SLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQE 200
S E L L+ +N+ +N L + + + L K++E
Sbjct: 83 SREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKE 125
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 83.9 bits (207), Expect = 3e-21
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
S PF K++ PDYY++I NP L TI K + Y + ++NL+ N+ K+N
Sbjct: 28 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 87
Query: 74 ADSRLYRDAVKLQKLMQRKVQENPRSLLTIGKTLKSG 110
+S+ + A ++ + + + E L + K + +
Sbjct: 88 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTA 124
Score = 58.4 bits (141), Expect = 1e-11
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
KV NP L TI K + Y + ++NL+ N+ K+N +S+ + A ++ +
Sbjct: 45 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 104
Query: 152 RKVQEF 157
+ + E+
Sbjct: 105 QTLTEY 110
Score = 39.9 bits (93), Expect = 4e-05
Identities = 6/44 (13%), Positives = 20/44 (45%)
Query: 159 LNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
+++L+ N+ K+N + + + A ++ + + + E
Sbjct: 68 RESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 111
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 81.6 bits (201), Expect = 1e-20
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PF++ K PDYY +I+ P L T+ + L+S +Y T +L + N +++NP
Sbjct: 20 AWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 79
Query: 74 ADSRLYRDAVKLQKLMQRKVQE 95
DS R A L+K K++E
Sbjct: 80 PDSEYCRCASALEKFFYFKLKE 101
Score = 58.9 bits (142), Expect = 4e-12
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 91 RKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLM 150
+V P L T+ + L+S +Y T +L + N +++NP DS R A L+K
Sbjct: 36 YEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFF 95
Query: 151 QRKVQE 156
K++E
Sbjct: 96 YFKLKE 101
Score = 42.7 bits (100), Expect = 3e-06
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 130 KKFNPADSRLYRDAVK----LQKLMQRKVQE--FSLNELTGELSLMFENAKKFNPADLRL 183
+ +++ Y + ++ L+ + +R + +L + N +++NP D
Sbjct: 25 EPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEY 84
Query: 184 YRDAVKLQKLMQRKVQE 200
R A L+K K++E
Sbjct: 85 CRCASALEKFFYFKLKE 101
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 80.8 bits (199), Expect = 3e-20
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PFL+ K PDYY IK P L T+ L+S Y + + + L+F N + +N
Sbjct: 21 AWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNG 80
Query: 74 ADSRLYRDAVKLQKLMQRKVQENP 97
++ Y+ A +L+K KV+E P
Sbjct: 81 ENTSYYKYANRLEKFFNNKVKEIP 104
Score = 56.9 bits (137), Expect = 3e-11
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 75 DSRLYRDAVKLQKLMQ-RKVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFN 133
+ + V +++ + P L T+ L+S Y + + + L+F N + +N
Sbjct: 20 AAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYN 79
Query: 134 PADSRLYRDAVKLQKLMQRKVQEF 157
++ Y+ A +L+K KV+E
Sbjct: 80 GENTSYYKYANRLEKFFNNKVKEI 103
Score = 39.5 bits (92), Expect = 4e-05
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 160 NELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEV 201
+ + L+F N + +N + Y+ A +L+K KV+E+
Sbjct: 62 EDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 103
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 79.2 bits (195), Expect = 1e-19
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 14 SEPFLKL--PAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKF 71
S PF + P PDY+ I+KNP L TI + L +G Y + ++ LMF NA +
Sbjct: 25 SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 84
Query: 72 NPADSRLYRDAVKLQKLMQRKVQENPRSL 100
N SR+Y+ KL ++ ++++ +SL
Sbjct: 85 NRKTSRVYKFCSKLAEVFEQEIDPVMQSL 113
Score = 57.7 bits (139), Expect = 2e-11
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 53 TLNELTGELNLMFENAKKFNPADSRLYR---DAVKLQKLMQRKVQENPRSLLTIGKTLKS 109
EL L E + +P +S +R D L + +NP L TI + L +
Sbjct: 3 KPEELRQALMPTLEALYRQDP-ESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDT 61
Query: 110 GHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQRKVQEF 157
G Y + ++ LMF NA +N SR+Y+ KL ++ ++++
Sbjct: 62 GQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPV 109
Score = 41.9 bits (98), Expect = 7e-06
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 147 QKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVM 202
+KL + QE + ++ LMF NA +N R+Y+ KL ++ ++++ VM
Sbjct: 57 RKLDTGQYQE--PWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 110
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 78.5 bits (193), Expect = 3e-19
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 14 SEPFLKLPAKRYNPDYYRIIKNPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNP 73
+ PF++ + P YY +I+ P L T+ + LK+ +Y + +L +F N K++NP
Sbjct: 31 AWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNP 90
Query: 74 ADSRLYRDAVKLQKLMQRKVQE 95
+S Y+ A L+K K++E
Sbjct: 91 PESEYYKCANILEKFFFSKIKE 112
Score = 57.7 bits (139), Expect = 2e-11
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 92 KVQENPRSLLTIGKTLKSGHYSTLNELTGELNLMFENAKKFNPADSRLYRDAVKLQKLMQ 151
+V P L T+ + LK+ +Y + +L +F N K++NP +S Y+ A L+K
Sbjct: 48 EVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFF 107
Query: 152 RKVQEFSL 159
K++E L
Sbjct: 108 SKIKEAGL 115
Score = 42.0 bits (98), Expect = 6e-06
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 166 LSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMILD 205
L +F N K++NP + Y+ A L+K K++E ++D
Sbjct: 78 LQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGLID 117
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein
HypC {Shewanella oneidensis [TaxId: 70863]}
Length = 76
Score = 25.8 bits (57), Expect = 1.4
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 202 MILDIECQVYLISDELTHYQVVLTGTAEQVRLSGLPD----GDWL 242
M L I QV + +E V G V + + GD++
Sbjct: 1 MCLSIPSQVVAVDNERQSVTVDTLGVRRDVSSHLMTEPLAIGDYV 45
>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase
associated protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 157
Score = 25.5 bits (56), Expect = 5.4
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 208 CQVYLISDELTHYQVVLTGTAE-QVRLSGLPDGDWLAFTLP 247
+YL S E + ++ + + V L D D++ F +P
Sbjct: 99 GNIYL-SKESLNTEIYTSCSTAINVNLPIGEDDDYVEFPIP 138
>d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 141
Score = 25.0 bits (54), Expect = 6.5
Identities = 13/69 (18%), Positives = 21/69 (30%)
Query: 145 KLQKLMQRKVQEFSLNELTGELSLMFENAKKFNPADLRLYRDAVKLQKLMQRKVQEVMIL 204
+LQK+M + T E L + A L +LM+ +
Sbjct: 18 RLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLHELMRAWELVHRVW 77
Query: 205 DIECQVYLI 213
E V +
Sbjct: 78 TAEAHVRHM 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.370
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 894,898
Number of extensions: 40505
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 25
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)