BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12250
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQD 122
+ +IGDAAH M PF GQG+N+G D IL D
Sbjct: 296 ITMIGDAAHLMPPFAGQGVNSGLVDALILSD 326
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQD 122
+ +IGDAAH M PF GQG+N+G D IL D
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSD 346
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQD 122
+ +IGDAAH M PF GQG+N+G D IL D
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSD 346
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQD 122
+ +IGDAAH M PF GQG+N+G D IL D
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSD 346
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLTSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPAEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQD 122
+ IGDAAH PF GQG+N+G D IL D
Sbjct: 317 ITXIGDAAHLXPPFAGQGVNSGLVDALILSD 347
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPSEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQD 122
+ IGDAAH PF GQG+N+G D IL D
Sbjct: 296 ITXIGDAAHLXPPFAGQGVNSGLVDALILSD 326
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPSEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPSEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPSEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPSEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G+N D
Sbjct: 247 LPSEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLNLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 87 HKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120
+++ +VL+ GDAAH P GQG+N G +D L
Sbjct: 319 YRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNL 352
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 IPLIGAERLVAD-FFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+P AE+LV + APL S P ++ ++ + GDAAH + P +G++ D
Sbjct: 247 LPSEVAEKLVTGPSLEKSIAPLRSFVVEPM-QHGRLFLAGDAAHIVPPTGAKGLDLAASD 305
Query: 117 CCILQDLMIQ-YDEDFGKVLPKFTEV 141
L L+++ Y E G++L +++ +
Sbjct: 306 VSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 50 FDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHK--NDKVLIIGDAAHAMVPFYG 107
+YF P + ++L+A + + P+ + +V ++GDA H+ P G
Sbjct: 261 LSRYFAGWAPPV--QKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIG 318
Query: 108 QGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKS 167
QG A ED +L + Q D L ++ R CD +RDLV K+
Sbjct: 319 QGGCAAMEDAVVLGAVFRQT-RDIAAALREYEAQR-------CD-------RVRDLVLKA 363
Query: 168 SFLWRKRFD 176
RKR D
Sbjct: 364 ----RKRCD 368
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAIC 150
+V ++GDA H+ P GQG A ED +L + Q D L ++ R C
Sbjct: 302 RVALLGDAGHSTTPDIGQGGCAAXEDAVVLGAVFRQT-RDIAAALREYEAQR-------C 353
Query: 151 DLAMYNYIEMRDLVTKSSFLWRKRFD 176
D +RDLV K+ RKR D
Sbjct: 354 D-------RVRDLVLKA----RKRCD 368
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 87 HKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120
++ +VL+ GD+AH +P GQGMN +D L
Sbjct: 275 YRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNL 308
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 86 YHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCIL--QDLMIQYDEDFGKVLPKFTEVRQ 143
+ K+++V I GDA H P GQGMN D L + ++ +L + E RQ
Sbjct: 347 FSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQ 406
Query: 144 HDAEAICD 151
A+A+ D
Sbjct: 407 PFAQALID 414
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 87 HKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120
++ +V++ GD+AH +P GQGMN +D L
Sbjct: 274 YRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNL 307
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 86 YHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDC 117
+ K+++V I GDA H P GQGMN D
Sbjct: 346 FSKDERVFIAGDACHTHSPKAGQGMNTSMMDT 377
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 77 PLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLP 136
P++ P+ ++ ++GDAAH M P G + D L + + + D L
Sbjct: 290 PMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR-NADVAAALR 348
Query: 137 KFTEVRQHDAEAI 149
++ E R+ A I
Sbjct: 349 EYEEARRPTANKI 361
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 88 KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQH 144
K+ V ++GDA H P G G N D +L + E+ K + + + +
Sbjct: 309 KSSTVTLLGDAIHNXTPXTGSGANTALRDALLLTQKLASVASGHEELVKAISDYEQQXRA 368
Query: 145 DAEAICDLAM 154
A I +++
Sbjct: 369 YANEIVGISL 378
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFG 132
KV ++GDAAHAM P QG C ++ + D + G
Sbjct: 282 KVALVGDAAHAMCPALAQGAG-----CAMVNAFSLSQDLEEG 318
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 90 DKVLIIGDAAHAMVPFYGQGMNAGFE 115
D V ++GDA H + P GQGMN E
Sbjct: 286 DNVAMLGDAIHNVHPITGQGMNLAIE 311
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFG 132
KV ++GDAAHAM P QG C ++ + D + G
Sbjct: 282 KVALVGDAAHAMCPALAQGAG-----CAMVNAFSLSQDLEEG 318
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFG 132
KV ++GDAAHAM P QG C ++ + D + G
Sbjct: 282 KVALVGDAAHAMCPALAQGAG-----CAMVNAFSLSQDLEEG 318
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFG 132
KV ++GDAAHAM P QG C ++ + D + G
Sbjct: 318 KVALVGDAAHAMCPALAQGAG-----CAMVNAFSLSQDLEEG 354
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120
+V + GDAAH + P G GMN G L
Sbjct: 310 RVFLTGDAAHTLSPSGGFGMNTGIGSAADL 339
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120
+V + GDAAH + P G GMN G L
Sbjct: 310 RVFLTGDAAHTLSPSGGFGMNTGIGSAADL 339
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 91 KVLIIGDAAHAMVPFYGQGMNAGFED 116
+V I GDA H P GQGMN +D
Sbjct: 343 RVFIAGDACHTHSPKAGQGMNFSMQD 368
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 91 KVLIIGDAAHAMVPFYGQG----------MNAGFEDCCILQDLMIQYD 128
KV ++GDAAHA P QG ++ E+ ++D ++ ++
Sbjct: 318 KVALVGDAAHAXCPALAQGAGCAXVNAFSLSQDLEEGSSVEDALVAWE 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,303,832
Number of Sequences: 62578
Number of extensions: 296118
Number of successful extensions: 713
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 46
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)