Query psy12250
Match_columns 235
No_of_seqs 228 out of 1918
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 22:36:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2614|consensus 100.0 2.2E-30 4.8E-35 223.6 8.5 206 2-218 202-409 (420)
2 PRK06475 salicylate hydroxylas 99.9 9.8E-23 2.1E-27 181.6 16.4 145 4-156 207-356 (400)
3 PLN02985 squalene monooxygenas 99.9 4.3E-22 9.4E-27 182.4 15.9 176 3-180 238-421 (514)
4 TIGR03219 salicylate_mono sali 99.9 5.4E-22 1.2E-26 177.6 13.4 149 6-161 210-374 (414)
5 PRK08163 salicylate hydroxylas 99.9 1.5E-21 3.2E-26 173.5 15.9 149 6-161 203-357 (396)
6 PRK07588 hypothetical protein; 99.9 3.4E-21 7.3E-26 171.1 15.2 170 6-180 195-368 (391)
7 PRK06126 hypothetical protein; 99.9 6.6E-21 1.4E-25 176.2 17.0 173 5-187 227-410 (545)
8 PRK08849 2-octaprenyl-3-methyl 99.9 2.1E-21 4.5E-26 172.3 12.3 165 7-182 204-370 (384)
9 PRK06847 hypothetical protein; 99.9 9.8E-21 2.1E-25 167.0 15.4 150 6-161 197-352 (375)
10 PRK07236 hypothetical protein; 99.9 7.3E-21 1.6E-25 168.8 14.1 82 77-159 293-374 (386)
11 PRK08243 4-hydroxybenzoate 3-m 99.9 1.8E-20 3.9E-25 166.7 16.3 143 19-166 212-356 (392)
12 PRK06183 mhpA 3-(3-hydroxyphen 99.8 1.5E-20 3.2E-25 173.6 15.3 144 7-161 211-359 (538)
13 COG0654 UbiH 2-polyprenyl-6-me 99.8 2.1E-20 4.6E-25 166.0 14.2 159 15-180 206-369 (387)
14 PRK07045 putative monooxygenas 99.8 3E-20 6.6E-25 164.9 14.4 140 16-159 211-357 (388)
15 PRK06185 hypothetical protein; 99.8 2.3E-20 5E-25 166.5 12.7 164 15-183 212-381 (407)
16 PRK08850 2-octaprenyl-6-methox 99.8 2.8E-20 6.1E-25 166.0 13.0 160 15-182 211-378 (405)
17 PRK06834 hypothetical protein; 99.8 1.2E-19 2.5E-24 165.7 16.7 135 18-160 200-337 (488)
18 PRK07364 2-octaprenyl-6-methox 99.8 2.3E-20 5.1E-25 166.8 11.6 164 8-181 219-389 (415)
19 PRK06184 hypothetical protein; 99.8 9E-20 1.9E-24 167.2 15.4 149 4-160 201-352 (502)
20 PRK06996 hypothetical protein; 99.8 3.7E-20 8E-25 165.0 12.4 162 10-182 215-381 (398)
21 PRK06617 2-octaprenyl-6-methox 99.8 3.2E-20 7E-25 164.1 11.9 163 7-184 196-361 (374)
22 PRK08013 oxidoreductase; Provi 99.8 3.1E-20 6.7E-25 165.6 11.8 165 8-181 205-377 (400)
23 PRK05714 2-octaprenyl-3-methyl 99.8 3.5E-20 7.6E-25 165.4 11.9 106 75-182 271-381 (405)
24 PRK05868 hypothetical protein; 99.8 5.6E-20 1.2E-24 162.5 13.0 146 5-157 194-349 (372)
25 PRK09126 hypothetical protein; 99.8 3.8E-20 8.3E-25 164.2 11.2 165 6-178 201-372 (392)
26 PRK08244 hypothetical protein; 99.8 1.7E-19 3.7E-24 164.9 15.4 142 11-160 198-344 (493)
27 PRK07494 2-octaprenyl-6-methox 99.8 6E-20 1.3E-24 162.8 12.0 162 10-181 207-372 (388)
28 PTZ00367 squalene epoxidase; P 99.8 2.8E-19 6E-24 165.2 16.4 168 3-180 251-435 (567)
29 PRK08773 2-octaprenyl-3-methyl 99.8 9.9E-20 2.1E-24 161.8 12.5 162 16-185 213-381 (392)
30 TIGR02360 pbenz_hydroxyl 4-hyd 99.8 2.5E-19 5.5E-24 159.3 15.1 88 77-165 267-355 (390)
31 PRK07608 ubiquinone biosynthes 99.8 9.8E-20 2.1E-24 161.3 12.1 168 6-181 201-374 (388)
32 PRK07538 hypothetical protein; 99.8 3.2E-19 6.9E-24 159.7 15.3 135 13-155 208-361 (413)
33 PRK06753 hypothetical protein; 99.8 5.2E-19 1.1E-23 156.0 15.7 148 6-161 188-339 (373)
34 PLN02927 antheraxanthin epoxid 99.8 2.6E-19 5.7E-24 166.9 13.7 147 6-157 284-443 (668)
35 TIGR01988 Ubi-OHases Ubiquinon 99.8 3.6E-19 7.9E-24 157.2 12.6 156 16-179 207-369 (385)
36 PRK07333 2-octaprenyl-6-methox 99.8 3.1E-19 6.7E-24 158.9 11.6 162 10-181 207-375 (403)
37 PRK08020 ubiF 2-octaprenyl-3-m 99.8 6E-19 1.3E-23 156.6 12.9 164 10-184 209-379 (391)
38 PRK08132 FAD-dependent oxidore 99.8 1.3E-18 2.8E-23 161.1 15.4 137 15-160 232-371 (547)
39 TIGR01984 UbiH 2-polyprenyl-6- 99.8 6.7E-19 1.5E-23 155.7 12.4 157 16-180 206-367 (382)
40 TIGR01989 COQ6 Ubiquinone bios 99.8 1E-18 2.2E-23 157.6 13.7 108 75-184 319-431 (437)
41 PRK08294 phenol 2-monooxygenas 99.8 4.8E-18 1E-22 159.4 17.0 146 11-163 252-415 (634)
42 PF01494 FAD_binding_3: FAD bi 99.8 7.3E-19 1.6E-23 152.6 10.3 79 74-153 276-356 (356)
43 PRK05732 2-octaprenyl-6-methox 99.8 1.1E-18 2.5E-23 154.8 11.3 157 16-180 213-376 (395)
44 PRK07190 hypothetical protein; 99.8 9.2E-18 2E-22 153.2 13.8 134 16-160 211-347 (487)
45 PRK08255 salicylyl-CoA 5-hydro 99.7 3.1E-17 6.7E-22 157.0 12.2 137 16-157 188-336 (765)
46 PF08491 SE: Squalene epoxidas 99.7 1.4E-15 3E-20 127.2 14.1 174 3-180 43-224 (276)
47 TIGR02032 GG-red-SF geranylger 99.4 1.6E-12 3.4E-17 110.4 9.8 100 14-124 195-295 (295)
48 TIGR02023 BchP-ChlP geranylger 99.2 2.3E-10 5E-15 101.8 14.9 136 3-153 188-328 (388)
49 KOG1298|consensus 99.1 1.2E-09 2.7E-14 94.5 13.4 176 2-180 238-421 (509)
50 PLN00093 geranylgeranyl diphos 99.1 2.6E-09 5.6E-14 96.9 14.8 74 83-157 303-381 (450)
51 TIGR02028 ChlP geranylgeranyl 99.1 3.6E-09 7.8E-14 94.6 14.5 71 84-155 265-340 (398)
52 TIGR01790 carotene-cycl lycope 99.0 6E-09 1.3E-13 92.5 14.2 125 15-148 196-321 (388)
53 KOG3855|consensus 98.9 1.6E-09 3.5E-14 94.5 4.0 80 76-156 357-441 (481)
54 PRK11445 putative oxidoreducta 98.9 7.4E-09 1.6E-13 91.0 8.0 54 89-145 263-316 (351)
55 TIGR01789 lycopene_cycl lycope 98.9 1.6E-08 3.4E-13 89.6 9.8 131 12-152 177-313 (370)
56 COG0644 FixC Dehydrogenases (f 98.6 2.5E-06 5.4E-11 76.2 15.0 139 12-156 196-335 (396)
57 PRK10015 oxidoreductase; Provi 98.4 4.8E-06 1E-10 75.3 12.9 123 18-145 226-355 (429)
58 PRK10157 putative oxidoreducta 98.3 1.2E-05 2.7E-10 72.5 13.5 123 19-146 227-356 (428)
59 PF04820 Trp_halogenase: Trypt 98.0 0.00012 2.6E-09 66.7 12.4 69 89-158 315-383 (454)
60 PLN02697 lycopene epsilon cycl 97.7 0.0013 2.8E-08 61.0 14.9 126 14-153 305-447 (529)
61 PLN02463 lycopene beta cyclase 96.6 0.011 2.4E-07 53.8 8.4 39 89-127 293-331 (447)
62 PF05834 Lycopene_cycl: Lycope 96.6 0.019 4E-07 51.0 9.7 105 12-127 183-291 (374)
63 PF10819 DUF2564: Protein of u 73.6 5.7 0.00012 26.9 3.5 46 95-141 19-65 (79)
64 PRK07233 hypothetical protein; 44.6 62 0.0014 28.6 6.0 35 89-126 395-429 (434)
65 TIGR02352 thiamin_ThiO glycine 40.6 1.2E+02 0.0026 25.6 7.0 94 17-125 233-334 (337)
66 PF07151 DUF1391: Protein of u 28.8 1.3E+02 0.0029 17.9 4.5 26 13-38 10-35 (49)
67 TIGR02730 carot_isom carotene 28.4 65 0.0014 29.5 3.5 32 90-126 459-490 (493)
68 TIGR00562 proto_IX_ox protopor 28.2 98 0.0021 27.8 4.6 31 90-126 428-458 (462)
69 TIGR02733 desat_CrtD C-3',4' d 27.8 67 0.0014 29.4 3.5 32 90-126 459-490 (492)
70 TIGR01292 TRX_reduct thioredox 27.0 56 0.0012 27.1 2.6 33 89-125 265-297 (300)
71 KOG2470|consensus 26.9 2.3E+02 0.0049 25.4 6.2 91 84-188 342-446 (510)
72 PF01593 Amino_oxidase: Flavin 25.7 83 0.0018 27.2 3.6 32 90-124 418-449 (450)
73 TIGR02734 crtI_fam phytoene de 23.4 98 0.0021 28.4 3.7 32 90-126 459-490 (502)
74 PF11629 Mst1_SARAH: C termina 22.4 2E+02 0.0043 17.7 4.3 23 128-150 25-47 (49)
75 PF11328 DUF3130: Protein of u 22.0 2.6E+02 0.0055 19.5 4.5 58 95-155 18-77 (90)
76 TIGR02732 zeta_caro_desat caro 21.0 2E+02 0.0044 26.3 5.2 33 89-124 441-473 (474)
No 1
>KOG2614|consensus
Probab=99.96 E-value=2.2e-30 Score=223.62 Aligned_cols=206 Identities=38% Similarity=0.630 Sum_probs=179.7
Q ss_pred CCCcEEEccCCCeEEEEeecCCceEEEEEEeeCCccCCC-CCHHHHHHHHhhhCCCccccccchhhhhh-hhcCCCCccc
Q psy12250 2 DPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLL-GTARALLDFFDKYFPDAIPLIGAERLVAD-FFSRKAAPLI 79 (235)
Q Consensus 2 ~~~~~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~i~~~~~~~~-~~~~~~~~l~ 79 (235)
.++++|.|+++.++.++|..-+..++++++.+.+.++.. ....++.+++.+.+|++.+++.....+.+ +..+++|++.
T Consensus 202 ~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i 281 (420)
T KOG2614|consen 202 YGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLI 281 (420)
T ss_pred cCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCee
Confidence 467899999999999999999999999998887766655 47788889999989998888876555555 6677788887
Q ss_pred eeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 80 SIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 80 ~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
...|. +++|||+|||||+|.|+.|||+|+||||+.+|+++|+++..+++.+++.|++ .+...++.+.+..+|..
T Consensus 282 ~~~~s----~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~--~~e~~~~ie~a~~~Y~~ 355 (420)
T KOG2614|consen 282 SVKCS----PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSR--ENESHAIIELAMYSYKE 355 (420)
T ss_pred eeccC----CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceec--ccchhHHHHHHHHHHHH
Confidence 76663 5699999999999999999999999999999999999997779999999986 77788889999999988
Q ss_pred hhhhcCChHHHHHHHHHHHHHHhCCCCcccccceEEecCCCHHHHHHHhhHHHHHHHHh
Q psy12250 160 MRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQE 218 (235)
Q Consensus 160 ~~~~~~~~~~~~r~~l~~~l~~~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 218 (235)
++ ..+.+|..+...+..++|..|.|.|.+..|++.+|++++++..+|+++++-.
T Consensus 356 ~r-----~~r~~rl~~~~~l~gi~~~s~~~l~~m~~F~d~~ys~~l~~~~~~~~~~~~g 409 (420)
T KOG2614|consen 356 ER-----WRRLLRLKVDAYLVGILPQSFGPLYLMVSFRDIIYSEALERLGIKKKILNDG 409 (420)
T ss_pred HH-----HHHHhhhhhhheeeEeccccccchhhccchhhhhHHHHHHHHHhhhhhhccc
Confidence 76 4567888999999999999999999999999999999999999999988653
No 2
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.90 E-value=9.8e-23 Score=181.64 Aligned_cols=145 Identities=21% Similarity=0.349 Sum_probs=111.1
Q ss_pred CcEEEccCCCeEEEEeecCCc-eEEEEEEeeCC----ccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCcc
Q psy12250 4 NFLHIWPRGTFMMIALPNQDH-SWTVTLFMPFE----KFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPL 78 (235)
Q Consensus 4 ~~~~~w~g~~~~~~~~p~~~g-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l 78 (235)
+..+.|.+++..++.+|..++ .++++...+.. .+....+.+++.+.+.+|.|.+.+++.... . ...+++
T Consensus 207 ~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~---~---~~~~~l 280 (400)
T PRK06475 207 KAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAID---E---WTYWPL 280 (400)
T ss_pred CceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCC---c---eeECcC
Confidence 345677777777888999877 44444333222 133345788999999888887777764321 2 223667
Q ss_pred ceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy12250 79 ISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYN 156 (235)
Q Consensus 79 ~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~ 156 (235)
..+.+.+|+..|||+|||||||+|+|+.|||+|+|||||.+|+++|.. .+++.+|+.|++.|+++++.++..++.+
T Consensus 281 ~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~--~~~~~aL~~Ye~~R~~r~~~~~~~s~~~ 356 (400)
T PRK06475 281 FEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS--DDQSAGLKRFDSVRKERIAAVAKRGQLN 356 (400)
T ss_pred cccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666765479999999999999999999999999999999999974 4788999999999999999999998643
No 3
>PLN02985 squalene monooxygenase
Probab=99.88 E-value=4.3e-22 Score=182.44 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=123.3
Q ss_pred CCcEEEccCCCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhC-CCccccccchh--hhhhhhcCCCCccc
Q psy12250 3 PNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYF-PDAIPLIGAER--LVADFFSRKAAPLI 79 (235)
Q Consensus 3 ~~~~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~i~~~~--~~~~~~~~~~~~l~ 79 (235)
++..|+|.+++..++.+|++++.+++++..+.+..... +..++.++++++. |.+.+.+...- ..+.......++..
T Consensus 238 ~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~ 316 (514)
T PLN02985 238 PEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSI-ANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTK 316 (514)
T ss_pred CCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCCc-ChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcc
Confidence 55678888888788889999888888887776544333 3467777776643 44333332110 00110011122333
Q ss_pred eeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-----ccCHHHHHHHHHHHhHHHHHHHHHHHH
Q psy12250 80 SIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-----DEDFGKVLPKFTEVRQHDAEAICDLAM 154 (235)
Q Consensus 80 ~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-----~~~~~~al~~Y~~~R~~~~~~~~~~s~ 154 (235)
......|. .+|++|||||||+|+|++|||||+|||||.+|+++|... ..++..+|+.|+++|++++..++.+|.
T Consensus 317 ~l~~~~~~-~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~ 395 (514)
T PLN02985 317 RMSATLSD-KKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGN 395 (514)
T ss_pred cccccccC-CCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 33333454 799999999999999999999999999999999999864 235679999999999999999999999
Q ss_pred HhHHHhhhhcCChHHHHHHHHHHHHH
Q psy12250 155 YNYIEMRDLVTKSSFLWRKRFDSFLF 180 (235)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~l~~~l~ 180 (235)
..+..+..........+|+.+.+++.
T Consensus 396 al~~~f~a~~~~~~~~l~~~~f~y~~ 421 (514)
T PLN02985 396 AFSQVLVASTDEAKEAMRQGCYDYLC 421 (514)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99887653333335567777666554
No 4
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.88 E-value=5.4e-22 Score=177.59 Aligned_cols=149 Identities=23% Similarity=0.283 Sum_probs=110.4
Q ss_pred EEEccCCCeEEEEeecCCce-EEEEEEeeCCc-----------cCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcC
Q psy12250 6 LHIWPRGTFMMIALPNQDHS-WTVTLFMPFEK-----------FGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSR 73 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~-~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~ 73 (235)
.++|.+.+.+++.+|..+|. ++++++.+... +....+.+++.+.|.+|.|.+.+++.... . .
T Consensus 210 ~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~---~---~ 283 (414)
T TIGR03219 210 PQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIP---A---P 283 (414)
T ss_pred ceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCC---C---C
Confidence 34566666667788988875 55555543211 11123567888888888887777664322 1 1
Q ss_pred CCCccceee-cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHH
Q psy12250 74 KAAPLISIK-CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAI 149 (235)
Q Consensus 74 ~~~~l~~~~-~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~ 149 (235)
..+++.... ..+|+ .|||+|||||||+|+|+.|||+|+|||||.+|+++|... ..+++.+|+.|+++|++++..+
T Consensus 284 ~~~~~~~~~~~~~w~-~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r~~~~ 362 (414)
T TIGR03219 284 TLWALHDLAELPGYV-HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPRACRV 362 (414)
T ss_pred Cceeeeeccccccee-eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHHHHHH
Confidence 224444443 34686 899999999999999999999999999999999999864 3578999999999999999999
Q ss_pred HHHHHHhHHHhh
Q psy12250 150 CDLAMYNYIEMR 161 (235)
Q Consensus 150 ~~~s~~~~~~~~ 161 (235)
++.|+.+...+.
T Consensus 363 ~~~s~~~~~~~~ 374 (414)
T TIGR03219 363 QRTSREAGELYE 374 (414)
T ss_pred HHHHHHHHHHhc
Confidence 999998765543
No 5
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.88 E-value=1.5e-21 Score=173.49 Aligned_cols=149 Identities=15% Similarity=0.233 Sum_probs=112.9
Q ss_pred EEEccCCCeEEEEeecCCce-EEEEEEeeCCcc----CCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccce
Q psy12250 6 LHIWPRGTFMMIALPNQDHS-WTVTLFMPFEKF----GLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLIS 80 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~ 80 (235)
.++|.++..+++.+|..++. +++++..+.+.. ....+.+++.+.|.++.|.+.+++...+ .+. .+.+..
T Consensus 203 ~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~ 276 (396)
T PRK08163 203 PVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPT---SWK---RWATAD 276 (396)
T ss_pred cEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCC---cee---EccccC
Confidence 45677777777889987764 666665543321 1224678899999998888777664322 111 122222
Q ss_pred -eecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 81 -IKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 81 -~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
.+..+|+ .|||+|||||||+|+|+.|||+|+|||||.+|+++|.....+++.+|+.|+++|++++..++..++.....
T Consensus 277 ~~~~~~~~-~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~ 355 (396)
T PRK08163 277 REPVAKWS-TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPRTARVVLSAREMGRI 355 (396)
T ss_pred CCcccccc-cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 2345786 79999999999999999999999999999999999987656789999999999999999999999987765
Q ss_pred hh
Q psy12250 160 MR 161 (235)
Q Consensus 160 ~~ 161 (235)
+.
T Consensus 356 ~~ 357 (396)
T PRK08163 356 YH 357 (396)
T ss_pred hC
Confidence 54
No 6
>PRK07588 hypothetical protein; Provisional
Probab=99.87 E-value=3.4e-21 Score=171.14 Aligned_cols=170 Identities=11% Similarity=0.037 Sum_probs=107.2
Q ss_pred EEEccCCCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhh----CCCccccccchhhhhhhhcCCCCcccee
Q psy12250 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKY----FPDAIPLIGAERLVADFFSRKAAPLISI 81 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~i~~~~~~~~~~~~~~~~l~~~ 81 (235)
...|.+++..++.+|..++.+.+++..+.+......+.++..+.+++. .+....++........ ....+....
T Consensus 195 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 271 (391)
T PRK07588 195 YVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVED---LYFDVVSQI 271 (391)
T ss_pred EEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccc---hheeeeeee
Confidence 344555555677789888866555544433222223344444444443 3332233221111111 111223334
Q ss_pred ecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhh
Q psy12250 82 KCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMR 161 (235)
Q Consensus 82 ~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~ 161 (235)
...+|+ .|||+|||||||+|+|+.|||+|+|||||.+|+++|.....+.+.+|+.|++.|++++..++..+..+...+.
T Consensus 272 ~~~~w~-~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~ 350 (391)
T PRK07588 272 RMDRWS-RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFA 350 (391)
T ss_pred ccCccc-cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 456787 8999999999999999999999999999999999998754568899999999999999999999986554332
Q ss_pred hhcCChHHHHHHHHHHHHH
Q psy12250 162 DLVTKSSFLWRKRFDSFLF 180 (235)
Q Consensus 162 ~~~~~~~~~~r~~l~~~l~ 180 (235)
.. ......+|+.....+.
T Consensus 351 ~~-~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 351 PK-TRFGLYVRNIAMKIMN 368 (391)
T ss_pred CC-CHHHHHHHHHHHHHhc
Confidence 21 1122234555544444
No 7
>PRK06126 hypothetical protein; Provisional
Probab=99.86 E-value=6.6e-21 Score=176.23 Aligned_cols=173 Identities=16% Similarity=0.102 Sum_probs=117.0
Q ss_pred cEEEccCCCeEEEEeec-CCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeec
Q psy12250 5 FLHIWPRGTFMMIALPN-QDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKC 83 (235)
Q Consensus 5 ~~~~w~g~~~~~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 83 (235)
.+++|.++....+.++. .++.|++. ..+.+......+.+++.+.+++.++.-.+. .+.....|.......
T Consensus 227 ~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~~~w~~~~~~a 297 (545)
T PRK06126 227 WMYWLFNPDRRGVLVAIDGRDEWLFH-QLRGGEDEFTIDDVDARAFVRRGVGEDIDY--------EVLSVVPWTGRRLVA 297 (545)
T ss_pred eEEEEECCCccEEEEEECCCCeEEEE-EecCCCCCCCCCHHHHHHHHHHhcCCCCCe--------EEEeecccchhheeh
Confidence 35555444433333444 45567666 232222222345677888888776531111 111122355555666
Q ss_pred CCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhh
Q psy12250 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMR 161 (235)
Q Consensus 84 ~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~ 161 (235)
.+|+ .|||+|+|||||.|+|++|||+|+|||||.+|+++|... +...+.+|+.|+++|++++..+++.+..+...|.
T Consensus 298 ~~~~-~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~ 376 (545)
T PRK06126 298 DSYR-RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARRNADALG 376 (545)
T ss_pred hhhc-cCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 7887 899999999999999999999999999999999999876 3345799999999999999999999999887776
Q ss_pred hhcCC--------hHHHHHHHHHHHHHHhCCCCc
Q psy12250 162 DLVTK--------SSFLWRKRFDSFLFWMFPRLW 187 (235)
Q Consensus 162 ~~~~~--------~~~~~r~~l~~~l~~~~p~~~ 187 (235)
..... ....+|+.+.+.+....+..|
T Consensus 377 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 410 (545)
T PRK06126 377 SFPVPPEIEDDGPAGDAARRKVGDALSEHARQEF 410 (545)
T ss_pred ccccchhhccCChhHHHHHHHHHHHHhhcccccc
Confidence 44222 224567777666654444433
No 8
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.86 E-value=2.1e-21 Score=172.26 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=113.5
Q ss_pred EEccCCCeEEEEeecCCceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecC
Q psy12250 7 HIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCN 84 (235)
Q Consensus 7 ~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 84 (235)
++++.+...+ +|..++...++++.+...... ..+.+++.+.+.+.+|.....+.. .....+++....+.
T Consensus 204 ~~~~~g~~~~--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~l~~~~~~ 274 (384)
T PRK08849 204 QFTPSGPRSF--LPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEIKV-------LQHGSFPLTRRHAQ 274 (384)
T ss_pred EeCCCCCEEE--eEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhhhhhCcEEe-------ccceEeeccccccc
Confidence 3456666655 566555555566543322111 135677777777776654333211 11234566666677
Q ss_pred CcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhc
Q psy12250 85 PYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLV 164 (235)
Q Consensus 85 ~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~ 164 (235)
+|. .||++|||||||+|+|++|||+|+||+||.+|+++|...+.+.+.+|+.|+++|++++..++..+......... .
T Consensus 275 ~~~-~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~-~ 352 (384)
T PRK08849 275 QYV-KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSN-S 352 (384)
T ss_pred hhc-cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-C
Confidence 897 89999999999999999999999999999999999986545678999999999999999998887755443322 2
Q ss_pred CChHHHHHHHHHHHHHHh
Q psy12250 165 TKSSFLWRKRFDSFLFWM 182 (235)
Q Consensus 165 ~~~~~~~r~~l~~~l~~~ 182 (235)
..+...+|+.....++++
T Consensus 353 ~~~~~~~R~~~l~~~~~~ 370 (384)
T PRK08849 353 LTPLKFVRNAALKLAENS 370 (384)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 334555666665555543
No 9
>PRK06847 hypothetical protein; Provisional
Probab=99.86 E-value=9.8e-21 Score=166.99 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=100.3
Q ss_pred EEEccCCCeEEEEeecCCceEEEEEEeeCCccCCCCCHH----HHHHHHhhhCCC-ccccccchhhhhhhhcCCCCccce
Q psy12250 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTAR----ALLDFFDKYFPD-AIPLIGAERLVADFFSRKAAPLIS 80 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~-~~~~i~~~~~~~~~~~~~~~~l~~ 80 (235)
..+|.++...+..+|.+++...+.+..+..... ..+.+ .+.+.+..+.+. +..+... .........+++..
T Consensus 197 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 272 (375)
T PRK06847 197 SLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNP-RIEPDTLAALLRELLAPFGGPVLQELREQ---ITDDAQVVYRPLET 272 (375)
T ss_pred eEEEeCCCcEEEEEcCCCCeEEEEEeccCcccc-cCChHHHHHHHHHHHhhcCchHHHHHHHh---cCCccceeeccHhh
Confidence 456666666677789887755444433332211 12233 344444445432 2222210 11111111234443
Q ss_pred ee-cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 81 IK-CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 81 ~~-~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
.. +.+|. .|||+|||||||+|+|+.|||+|+|||||.+|+++|... .+++.+|+.|+++|++++..+++.|+.+...
T Consensus 273 ~~~~~~~~-~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~-~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~ 350 (375)
T PRK06847 273 LLVPAPWH-RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH-DSLEAALQAYYARRWERCRMVVEASARIGRI 350 (375)
T ss_pred ccCCCCcc-CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 33 34687 899999999999999999999999999999999999875 6789999999999999999999999987655
Q ss_pred hh
Q psy12250 160 MR 161 (235)
Q Consensus 160 ~~ 161 (235)
+.
T Consensus 351 ~~ 352 (375)
T PRK06847 351 EI 352 (375)
T ss_pred ec
Confidence 43
No 10
>PRK07236 hypothetical protein; Provisional
Probab=99.85 E-value=7.3e-21 Score=168.83 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=72.0
Q ss_pred ccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy12250 77 PLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYN 156 (235)
Q Consensus 77 ~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~ 156 (235)
++......+|. .|||+|||||||+|+|+.|||+|+|||||.+|+++|.....+++.+|+.|+++|++++..+++.|+..
T Consensus 293 ~~~~~~~~~~~-~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~ 371 (386)
T PRK07236 293 AIFDLEVPRMA-FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEAERLAVGAAIVARGRRL 371 (386)
T ss_pred hhhcccCcccc-cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444456786 89999999999999999999999999999999999988655689999999999999999999999865
Q ss_pred HHH
Q psy12250 157 YIE 159 (235)
Q Consensus 157 ~~~ 159 (235)
...
T Consensus 372 ~~~ 374 (386)
T PRK07236 372 GAR 374 (386)
T ss_pred HHH
Confidence 543
No 11
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.85 E-value=1.8e-20 Score=166.70 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=97.8
Q ss_pred eecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCcc-ccccchhhhhhhhcCCCCccceeecCCcccCCcEEEEcc
Q psy12250 19 LPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAI-PLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGD 97 (235)
Q Consensus 19 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvvLiGD 97 (235)
.|.+++.+++++..+........+.+++.+.+.+.++... ..+... .......+++....+.+|+ .|||+||||
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~grvvLvGD 286 (392)
T PRK08243 212 SMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPEDAERLVTG----PSIEKSIAPLRSFVAEPMQ-YGRLFLAGD 286 (392)
T ss_pred ecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCcccccccccC----ccccccceeeeeceeccce-eCCEEEEec
Confidence 3334444555554443221111234555666666655421 111101 1111233456666677887 799999999
Q ss_pred CccccCchhhhhhhhhhhhHHHHHHHHHhc-ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhcCC
Q psy12250 98 AAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTK 166 (235)
Q Consensus 98 AAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~ 166 (235)
|||+|+|++|||+|+||+||.+|+++|... ..+.+.+|+.|+++|+++++.+++.+......++..+..
T Consensus 287 AAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~ 356 (392)
T PRK08243 287 AAHIVPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDD 356 (392)
T ss_pred ccccCCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999876 345689999999999999999999998887776655433
No 12
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.85 E-value=1.5e-20 Score=173.63 Aligned_cols=144 Identities=22% Similarity=0.247 Sum_probs=103.9
Q ss_pred EEccCCCeEEEEeecCCceEEEEEEee-CCccCCCCCHHHHHHHHhhhC--CCccccccchhhhhhhhcCCCCccceeec
Q psy12250 7 HIWPRGTFMMIALPNQDHSWTVTLFMP-FEKFGLLGTARALLDFFDKYF--PDAIPLIGAERLVADFFSRKAAPLISIKC 83 (235)
Q Consensus 7 ~~w~g~~~~~~~~p~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--p~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 83 (235)
+.|.++...++.+|..++.+++.+... .+..+...+.+++.+.+..+. |...+++. ...+.+....+
T Consensus 211 ~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~a 280 (538)
T PRK06183 211 YQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQLASPENVWRLLAPWGPTPDDAELIR----------HAVYTFHARVA 280 (538)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhcCCHHHHHHHHHhhCCCCcceEEEE----------EEeeeEccEEh
Confidence 334333334555787777666544433 333334457788888888763 22222211 12244444556
Q ss_pred CCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhh
Q psy12250 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMR 161 (235)
Q Consensus 84 ~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~ 161 (235)
.+|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..+++.+......+.
T Consensus 281 ~~~~-~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~ 359 (538)
T PRK06183 281 DRWR-SGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVIC 359 (538)
T ss_pred hhhc-cCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 7897 899999999999999999999999999999999999865 4456799999999999999999999987765543
No 13
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.84 E-value=2.1e-20 Score=166.02 Aligned_cols=159 Identities=26% Similarity=0.250 Sum_probs=115.5
Q ss_pred EEEEeecCCceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcE
Q psy12250 15 MMIALPNQDHSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKV 92 (235)
Q Consensus 15 ~~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grv 92 (235)
.+..+|.+++...++++.+....+. ..+.+++.+.+.+.+|.... +... ........+|+....+.+|. .||+
T Consensus 206 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~---~~~~~~~~~pl~~~~a~~~~-~~Rv 280 (387)
T COG0654 206 PFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP-LGRV---TLVSSRSAFPLSLRVAERYR-RGRV 280 (387)
T ss_pred ceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc-cceE---EEccccccccccchhhhhee-cCcE
Confidence 3445888877777777776554332 24667777778887777633 2111 11223445788888888897 6999
Q ss_pred EEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcc---cCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhcCChHH
Q psy12250 93 LIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYD---EDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSF 169 (235)
Q Consensus 93 vLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~---~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~ 169 (235)
+|+|||||+|+|++|||+|+||+||.+|+++|.... .+ ..+|++|+++|++++..++..+......+. .......
T Consensus 281 ~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~-~~~~~~~ 358 (387)
T COG0654 281 VLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD-AAALAAYEARRRPRAEAIQKLSRALGRLFS-ADGPFAR 358 (387)
T ss_pred EEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhc-cCCcHHH
Confidence 999999999999999999999999999999999882 23 899999999999999999999985443333 2234444
Q ss_pred HHHHHHHHHHH
Q psy12250 170 LWRKRFDSFLF 180 (235)
Q Consensus 170 ~~r~~l~~~l~ 180 (235)
.+|....+++.
T Consensus 359 ~~r~~~l~~~~ 369 (387)
T COG0654 359 FLRNLGLRLLD 369 (387)
T ss_pred HHHHHHHHhhc
Confidence 55555555443
No 14
>PRK07045 putative monooxygenase; Reviewed
Probab=99.84 E-value=3e-20 Score=164.87 Aligned_cols=140 Identities=22% Similarity=0.304 Sum_probs=102.7
Q ss_pred EEEeecCCceEEEEEEeeCCccCCC---CCHHHHHHHHhhhC-CCccccccchhhhhhhhcCCCCccceeecCCcccCCc
Q psy12250 16 MIALPNQDHSWTVTLFMPFEKFGLL---GTARALLDFFDKYF-PDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDK 91 (235)
Q Consensus 16 ~~~~p~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~gr 91 (235)
++.+|.+++.+++++..+.+...+. .+.+++.+.+.+++ +.+.+.+... ........+++....+.+|+ .||
T Consensus 211 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~gr 286 (388)
T PRK07045 211 AYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAI---GAGTAFPLIPLGRMNLDRYH-KRN 286 (388)
T ss_pred EEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhcc---CcccccceeecCcccccccc-CCC
Confidence 4568988887777777665533222 35678888888776 3343333211 11111122345555567887 799
Q ss_pred EEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--c-cCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--D-EDFGKVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 92 vvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~-~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
|+|||||||+|+|++|||+|+||+||.+|+++|... + .+++.+|+.|+++|++++..++..++.....
T Consensus 287 v~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~ 357 (388)
T PRK07045 287 VVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALATT 357 (388)
T ss_pred EEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhh
Confidence 999999999999999999999999999999999876 2 2578999999999999999999998755443
No 15
>PRK06185 hypothetical protein; Provisional
Probab=99.84 E-value=2.3e-20 Score=166.51 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=118.4
Q ss_pred EEEEeecCCceEEEEEEeeCCccCCC--CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcE
Q psy12250 15 MMIALPNQDHSWTVTLFMPFEKFGLL--GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKV 92 (235)
Q Consensus 15 ~~~~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grv 92 (235)
.+..+|.. +.+++++..+.+..... .+.+++.+.+.+++|.+.+.+.. ...+.....+++......+|. .+|+
T Consensus 212 ~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~---~~~~~~~~~~~l~~~~~~~~~-~~rv 286 (407)
T PRK06185 212 GLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAE---LKSWDDVKLLDVRVDRLRRWH-RPGL 286 (407)
T ss_pred EEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhh---cCCccccEEEEEecccccccc-CCCe
Confidence 45557876 78888888876654332 46788888888888887665542 122333344566666667786 7999
Q ss_pred EEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhc-CChH
Q psy12250 93 LIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLV-TKSS 168 (235)
Q Consensus 93 vLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~-~~~~ 168 (235)
+|||||||.++|++|||+|+||+||..|+++|.+. ++..+.+|+.|+++|++++..++..+......+.... ..+.
T Consensus 287 ~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (407)
T PRK06185 287 LCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRG 366 (407)
T ss_pred EEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCcc
Confidence 99999999999999999999999999999999875 2234589999999999999999999886655443321 1233
Q ss_pred HHHHHHHHHHHHHhC
Q psy12250 169 FLWRKRFDSFLFWMF 183 (235)
Q Consensus 169 ~~~r~~l~~~l~~~~ 183 (235)
..+|......+++..
T Consensus 367 ~~~R~~~l~~~~~~~ 381 (407)
T PRK06185 367 PLGPPLLLRLLNRLP 381 (407)
T ss_pred ccCCchHHHHHHhCh
Confidence 344555555555543
No 16
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.84 E-value=2.8e-20 Score=166.04 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=107.1
Q ss_pred EEEEeecCC-ceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCc
Q psy12250 15 MMIALPNQD-HSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDK 91 (235)
Q Consensus 15 ~~~~~p~~~-g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~gr 91 (235)
.+..+|..+ +.+++++..+.+..+. ..+.+++.+.+.+.++.....+.. .. ....+|+......+|. .||
T Consensus 211 ~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~---~~~~~pl~~~~~~~~~-~~r 283 (405)
T PRK08850 211 PLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLGLCEV---VG---ERQAFPLKMRYARDFV-RER 283 (405)
T ss_pred ceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhCcEEE---cc---cccEEecceeeccccc-cCc
Confidence 345578775 4678877776543222 134456666555544332111111 11 1123566666667887 899
Q ss_pred EEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccC--HHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhcCC
Q psy12250 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DED--FGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTK 166 (235)
Q Consensus 92 vvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~--~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~ 166 (235)
|+|+|||||+|+|+.|||+|+||+||.+|+++|... +.+ .+.+|+.|+++|++++..++..+......+... ..
T Consensus 284 v~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~ 362 (405)
T PRK08850 284 VALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS-NP 362 (405)
T ss_pred EEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC-ch
Confidence 999999999999999999999999999999999864 233 468999999999999999999997665544322 22
Q ss_pred hHHHHHHHHHHHHHHh
Q psy12250 167 SSFLWRKRFDSFLFWM 182 (235)
Q Consensus 167 ~~~~~r~~l~~~l~~~ 182 (235)
....+|......+..+
T Consensus 363 ~~~~~R~~~l~~~~~~ 378 (405)
T PRK08850 363 AKKLVRGIGMSLAGQL 378 (405)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3344565555555543
No 17
>PRK06834 hypothetical protein; Provisional
Probab=99.83 E-value=1.2e-19 Score=165.71 Aligned_cols=135 Identities=18% Similarity=0.145 Sum_probs=101.4
Q ss_pred EeecC-CceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEEEEc
Q psy12250 18 ALPNQ-DHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIG 96 (235)
Q Consensus 18 ~~p~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvvLiG 96 (235)
..|.. ++.+++++..+........+.+++.+.+.+.++.-..... . .+ ...++...+.+.+|. .|||+|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~-~----~~--~~~~~~~~r~a~~~~-~gRV~LaG 271 (488)
T PRK06834 200 FGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALIAVYGTDYGIHS-P----TW--ISRFTDMARQAASYR-DGRVLLAG 271 (488)
T ss_pred EeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHhhCCCCcccc-c----ee--EEeccccceeccccc-CCcEEEEe
Confidence 34544 6777777765543333345778888888887753222111 1 11 233556666778897 89999999
Q ss_pred cCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 97 DAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 97 DAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
||||.|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..++..+..+...+
T Consensus 272 DAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~ 337 (488)
T PRK06834 272 DAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQVALL 337 (488)
T ss_pred eccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999886 456789999999999999999999887665433
No 18
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.83 E-value=2.3e-20 Score=166.76 Aligned_cols=164 Identities=21% Similarity=0.300 Sum_probs=110.6
Q ss_pred EccCCCeEEEEeecCCceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCC
Q psy12250 8 IWPRGTFMMIALPNQDHSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNP 85 (235)
Q Consensus 8 ~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 85 (235)
+|+++.+. .+|.+++..++++..+.+.... ..+.+++.+.+.+.++.....+.. ... ...+++....+.+
T Consensus 219 ~~~~g~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~ 290 (415)
T PRK07364 219 FWPSGPFA--ILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLGKLEL---LGD---RFLFPVQLMQSDR 290 (415)
T ss_pred ecCCCCeE--EeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCcee---cCC---Cceecchhhhhhh
Confidence 46666544 4788888777776655432211 124566666666655443222211 111 1235565556678
Q ss_pred cccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCH--HHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 86 YHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDF--GKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 86 ~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~--~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
|. .||++|||||||+|+|+.|||+|+||+||.+|+++|... +.++ ..+|+.|++.|++++..++..+......+
T Consensus 291 ~~-~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~ 369 (415)
T PRK07364 291 YV-QHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLF 369 (415)
T ss_pred hc-CCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 899999999999999999999999999999999999864 2344 38999999999999999999988766554
Q ss_pred hhhcCChHHHHHHHHHHHHHH
Q psy12250 161 RDLVTKSSFLWRKRFDSFLFW 181 (235)
Q Consensus 161 ~~~~~~~~~~~r~~l~~~l~~ 181 (235)
... ......+|+...+.+..
T Consensus 370 ~~~-~~~~~~~r~~~~~~~~~ 389 (415)
T PRK07364 370 SNQ-WWPLVVVRRLGLWLLRH 389 (415)
T ss_pred cCC-chHHHHHHHHHHHHHhh
Confidence 322 22333456655555543
No 19
>PRK06184 hypothetical protein; Provisional
Probab=99.83 E-value=9e-20 Score=167.15 Aligned_cols=149 Identities=20% Similarity=0.202 Sum_probs=107.8
Q ss_pred CcEEEccCCC-eEEEEeecCCc-eEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCcccee
Q psy12250 4 NFLHIWPRGT-FMMIALPNQDH-SWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISI 81 (235)
Q Consensus 4 ~~~~~w~g~~-~~~~~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~ 81 (235)
+..+.|..+. ..+..+|..++ .|++++..+.+. ....+.+++.+.+..+.+...-.+. .......|+....
T Consensus 201 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~ 273 (502)
T PRK06184 201 DAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGG-EPDLSADGLTALLAERTGRTDIRLH------SVTWASAFRMNAR 273 (502)
T ss_pred cceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCc-cCCCCHHHHHHHHHHhcCCCCccee------eeeeeecccccee
Confidence 4456665433 45666787654 677766554422 2235788899988887653211111 1111233555555
Q ss_pred ecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 82 KCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 82 ~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
.+.+|. .|||+|+|||||+|+|++|||+|+||+||.+|+++|+.. ....+.+|+.|+++|++++..+++.+...+..+
T Consensus 274 ~a~~~~-~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~ 352 (502)
T PRK06184 274 LADRYR-VGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPVAAAVLGLSTELLDAI 352 (502)
T ss_pred Ehhhhc-CCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567887 899999999999999999999999999999999999876 226678999999999999999999998876554
No 20
>PRK06996 hypothetical protein; Provisional
Probab=99.83 E-value=3.7e-20 Score=165.03 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=107.0
Q ss_pred cCCCeEEEEeecCCce---EEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecC
Q psy12250 10 PRGTFMMIALPNQDHS---WTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCN 84 (235)
Q Consensus 10 ~g~~~~~~~~p~~~g~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 84 (235)
+.+.+. .+|..++. +++++..+.+.... ..+.+++.+.+.+.++.....+.. ..+ ...+++......
T Consensus 215 ~~G~~~--~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~---~~~~~l~~~~~~ 286 (398)
T PRK06996 215 HEGPLA--LLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTR---IAG---RHAFPLGLNAAR 286 (398)
T ss_pred CCCCeE--EeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEE---ecc---eEEEeeeccccc
Confidence 444443 45765543 67766655432221 234556666666554442222211 011 112556656667
Q ss_pred CcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhc
Q psy12250 85 PYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLV 164 (235)
Q Consensus 85 ~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~ 164 (235)
+|. .|||+|||||||+|+|+.|||+|+||+||.+|+++|... .....+|+.|+++|++++..++..+..+...+...
T Consensus 287 ~~~-~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~-~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~- 363 (398)
T PRK06996 287 TLV-NGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH-GATPLALATFAARRALDRRVTIGATDLLPRLFTVD- 363 (398)
T ss_pred cee-cCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 887 899999999999999999999999999999999999764 34668899999999999999999998776554322
Q ss_pred CChHHHHHHHHHHHHHHh
Q psy12250 165 TKSSFLWRKRFDSFLFWM 182 (235)
Q Consensus 165 ~~~~~~~r~~l~~~l~~~ 182 (235)
......+|......+..+
T Consensus 364 ~~~~~~~R~~~l~~~~~~ 381 (398)
T PRK06996 364 SRPLAHLRGAALTALEFV 381 (398)
T ss_pred chHHHHHHhHHHHHHhhC
Confidence 223344555555555543
No 21
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.83 E-value=3.2e-20 Score=164.11 Aligned_cols=163 Identities=21% Similarity=0.296 Sum_probs=109.4
Q ss_pred EEccCCCeEEEEeecCCce-EEEEEEeeCCccCCC--CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeec
Q psy12250 7 HIWPRGTFMMIALPNQDHS-WTVTLFMPFEKFGLL--GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKC 83 (235)
Q Consensus 7 ~~w~g~~~~~~~~p~~~g~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 83 (235)
++.+.+++.+ +|..++. ..++|..+.+..... .+.+++.+.+...+......+. ... ....+++.....
T Consensus 196 ~~~~~g~~~~--lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~---~~~~~~l~~~~~ 267 (374)
T PRK06617 196 HFLPLGPFAL--LPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQRNAGNSLGKIT---IDS---EISSFPLKARIA 267 (374)
T ss_pred EecCCCCEEE--eECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHHHhhchhcCcee---ecc---ceeEEEeeeeec
Confidence 4446666444 7887775 456665553321111 2345666555544433222221 111 123467777777
Q ss_pred CCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhh
Q psy12250 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDL 163 (235)
Q Consensus 84 ~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~ 163 (235)
.+|+ .|||+|||||||+|+|+.|||+|+||+||.+|+++|.. ..+|+.|+++|++++..++..+......+...
T Consensus 268 ~~~~-~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~-----~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~ 341 (374)
T PRK06617 268 NRYF-HNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-----NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY 341 (374)
T ss_pred ccee-cCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC-----cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Confidence 7897 89999999999999999999999999999999999942 25899999999999999999998765544322
Q ss_pred cCChHHHHHHHHHHHHHHhCC
Q psy12250 164 VTKSSFLWRKRFDSFLFWMFP 184 (235)
Q Consensus 164 ~~~~~~~~r~~l~~~l~~~~p 184 (235)
..+...+|......++++-|
T Consensus 342 -~~~~~~~R~~~l~~~~~~~~ 361 (374)
T PRK06617 342 -SKNLRCLRQIGFKVINNFKP 361 (374)
T ss_pred -chHHHHHHHHHHHHHhcCHH
Confidence 23444566666666665433
No 22
>PRK08013 oxidoreductase; Provisional
Probab=99.83 E-value=3.1e-20 Score=165.61 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=107.2
Q ss_pred EccCCCeEEEEeecCCc-eEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecC
Q psy12250 8 IWPRGTFMMIALPNQDH-SWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCN 84 (235)
Q Consensus 8 ~w~g~~~~~~~~p~~~g-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 84 (235)
.|.+++ .+..+|..++ .+++++..+.+..+. ..+.+++.+.+...++.....+ +... ....+++....+.
T Consensus 205 ~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~---~~~~---~~~~~~l~~~~~~ 277 (400)
T PRK08013 205 VFHGDG-ILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFDNRLGLC---ELES---ERQVFPLTGRYAR 277 (400)
T ss_pred EEcCCC-CEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHhHhhCce---EecC---CccEEecceeecc
Confidence 444433 3445787665 466777665543221 2355677776665443211111 1111 1123566666677
Q ss_pred CcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHH--HHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 85 PYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFG--KVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 85 ~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~--~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
+|+ .|||+|||||||+|+|++|||+|+||+||.+|+++|... +.++. .+|+.|+++|++++..++..+......
T Consensus 278 ~~~-~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l 356 (400)
T PRK08013 278 QFA-AHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDL 356 (400)
T ss_pred ccc-CCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 899999999999999999999999999999999999854 33443 479999999999999999887765544
Q ss_pred hhhhcCChHHHHHHHHHHHHHH
Q psy12250 160 MRDLVTKSSFLWRKRFDSFLFW 181 (235)
Q Consensus 160 ~~~~~~~~~~~~r~~l~~~l~~ 181 (235)
+.. .......+|..+...+..
T Consensus 357 ~~~-~~~~~~~~R~~~l~~~~~ 377 (400)
T PRK08013 357 FAG-NNPAKKLLRDIGLKLADT 377 (400)
T ss_pred HcC-CchHHHHHHHHHHHHHhh
Confidence 432 222334455555554443
No 23
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.83 E-value=3.5e-20 Score=165.35 Aligned_cols=106 Identities=25% Similarity=0.307 Sum_probs=83.6
Q ss_pred CCccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCH--HHHHHHHHHHhHHHHHHH
Q psy12250 75 AAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDF--GKVLPKFTEVRQHDAEAI 149 (235)
Q Consensus 75 ~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~--~~al~~Y~~~R~~~~~~~ 149 (235)
.+++....+.+|+ .|||+|||||||+|+|+.|||+|+||+||.+|+++|... +.++ ..+|+.|+++|++++..+
T Consensus 271 ~~~l~~~~~~~~~-~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~ 349 (405)
T PRK05714 271 CVPLRQRHAKRYV-EPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLAL 349 (405)
T ss_pred EEecceeehhhhc-cCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3667777777897 899999999999999999999999999999999999864 2223 589999999999999999
Q ss_pred HHHHHHhHHHhhhhcCChHHHHHHHHHHHHHHh
Q psy12250 150 CDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWM 182 (235)
Q Consensus 150 ~~~s~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 182 (235)
+..++.+...+... ..+...+|+...+.++.+
T Consensus 350 ~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~ 381 (405)
T PRK05714 350 MAAMEGFERLFQAD-PLPLRWLRNTGLKLVDQM 381 (405)
T ss_pred HHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhC
Confidence 99998766544322 224445566665555543
No 24
>PRK05868 hypothetical protein; Validated
Probab=99.83 E-value=5.6e-20 Score=162.54 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=99.3
Q ss_pred cEEEc-cCCCeEEEEeecCCc-eEE-EEEEeeCC-ccCC---CCCHHHHHHHHhh--hC-CCccccccchhhhhhhhcCC
Q psy12250 5 FLHIW-PRGTFMMIALPNQDH-SWT-VTLFMPFE-KFGL---LGTARALLDFFDK--YF-PDAIPLIGAERLVADFFSRK 74 (235)
Q Consensus 5 ~~~~w-~g~~~~~~~~p~~~g-~~~-~~~~~~~~-~~~~---~~~~~~~~~~~~~--~~-p~~~~~i~~~~~~~~~~~~~ 74 (235)
..+.| .+++.++..+|..++ ..+ ++.+.+.+ .+.. ..+.+++.+.|.+ |. |.+.+.+.. ..++ .
T Consensus 194 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~---~~~~---~ 267 (372)
T PRK05868 194 YWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRS---APDF---Y 267 (372)
T ss_pred cceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhccc---CCce---e
Confidence 35555 466667778888764 433 33333222 1111 1245667777763 33 333333321 1111 1
Q ss_pred CCccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHH
Q psy12250 75 AAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAM 154 (235)
Q Consensus 75 ~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~ 154 (235)
...+.....++|+ +|||+|||||||+|+|+.|||+|+|||||.+|+++|.....+++++|+.|++.++|++...++...
T Consensus 268 ~~~~~~~~~~~w~-~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~~~~~~~al~~ye~~~~~~~~~~q~~~~ 346 (372)
T PRK05868 268 FDEMSQILMDRWS-RGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAAGDDYQLGFANYHAEFHGFVERNQWLVS 346 (372)
T ss_pred eccceEEecCCCC-CCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhHHHHHhhhhhh
Confidence 1124455567897 899999999999999999999999999999999999887668999999999999999988888766
Q ss_pred HhH
Q psy12250 155 YNY 157 (235)
Q Consensus 155 ~~~ 157 (235)
...
T Consensus 347 ~~~ 349 (372)
T PRK05868 347 DNI 349 (372)
T ss_pred ccC
Confidence 443
No 25
>PRK09126 hypothetical protein; Provisional
Probab=99.82 E-value=3.8e-20 Score=164.24 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=112.0
Q ss_pred EEEccCCCeEEEEeecCCceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeec
Q psy12250 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKC 83 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 83 (235)
.+.|.+.+..++.+|.+++.+++++..+.+.... ..+.+++.+.+.+.++.....+.. .. ....+++....+
T Consensus 201 ~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~---~~~~~~~~~~~~ 274 (392)
T PRK09126 201 AWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRL---VS---SRHAYPLVAVYA 274 (392)
T ss_pred EEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEE---cC---CCcEeechHHHH
Confidence 4556565556677899888888888766543221 134556655555544432221111 11 122355555556
Q ss_pred CCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcc---cC--HHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q psy12250 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYD---ED--FGKVLPKFTEVRQHDAEAICDLAMYNYI 158 (235)
Q Consensus 84 ~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~---~~--~~~al~~Y~~~R~~~~~~~~~~s~~~~~ 158 (235)
.+|. .||++|+|||||+++|+.|||+|+||+||..|+++|.... .+ .+.+|+.|+++|++++..++..+.....
T Consensus 275 ~~~~-~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~ 353 (392)
T PRK09126 275 HRFV-AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA 353 (392)
T ss_pred HHHh-hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7787 7999999999999999999999999999999999998751 23 4789999999999999999999987665
Q ss_pred HhhhhcCChHHHHHHHHHHH
Q psy12250 159 EMRDLVTKSSFLWRKRFDSF 178 (235)
Q Consensus 159 ~~~~~~~~~~~~~r~~l~~~ 178 (235)
.+... ......+|+.+.+.
T Consensus 354 ~~~~~-~~~~~~~r~~~~~~ 372 (392)
T PRK09126 354 LYTDD-RPPARLLRRAVLRA 372 (392)
T ss_pred HHCCC-chHHHHHHHHHHHH
Confidence 44332 22233445554443
No 26
>PRK08244 hypothetical protein; Provisional
Probab=99.82 E-value=1.7e-19 Score=164.93 Aligned_cols=142 Identities=16% Similarity=0.117 Sum_probs=104.5
Q ss_pred CCCeEEEEeecCCceEEEEEEeeCCcc---CCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcc
Q psy12250 11 RGTFMMIALPNQDHSWTVTLFMPFEKF---GLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYH 87 (235)
Q Consensus 11 g~~~~~~~~p~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (235)
+....++.+|.+++.+++++..+.... ....+.+++.+.+.++++....... . .+ ...+++......+|.
T Consensus 198 ~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~----~~--~~~~~~~~~~a~~~~ 270 (493)
T PRK08244 198 TREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFGLND-P----VW--MSRFGNATRQAERYR 270 (493)
T ss_pred eCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCCcCC-e----eE--EEecccceeeHhhhc
Confidence 333346668998888888765543321 1234788999988887764322211 0 11 122455556667887
Q ss_pred cCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 88 KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 88 ~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
+|||+|+|||||.++|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..++..+......+
T Consensus 271 -~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~ 344 (493)
T PRK08244 271 -SGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLF 344 (493)
T ss_pred -cCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 899999999999999999999999999999999999876 445568999999999999999999877654443
No 27
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.82 E-value=6e-20 Score=162.83 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=112.9
Q ss_pred cCCCeEEEEeecCCceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcc
Q psy12250 10 PRGTFMMIALPNQDHSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYH 87 (235)
Q Consensus 10 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (235)
+.+.+ ..+|..++.+++++..+.+.... ..+.+++.+.+.+.++.....+... . ....+++......+|.
T Consensus 207 ~~g~~--~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~---~~~~~~l~~~~~~~~~ 278 (388)
T PRK07494 207 EGGPF--TQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGKLTLE---P---GRQAWPLSGQVAHRFA 278 (388)
T ss_pred CCCcE--EEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCeEEc---c---CCcEeechHHHHHhhc
Confidence 34444 44777777778877665443222 2467888888888766654433211 1 1234677766667887
Q ss_pred cCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhccc--CHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhcC
Q psy12250 88 KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDE--DFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVT 165 (235)
Q Consensus 88 ~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~--~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~ 165 (235)
.||++|||||||+++|++|||+|+||+||..|+++|..... ....+|+.|+++|++++..++..+......+. ...
T Consensus 279 -~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~-~~~ 356 (388)
T PRK07494 279 -AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLL-SDF 356 (388)
T ss_pred -cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 89999999999999999999999999999999999987632 35789999999999999888877654443332 223
Q ss_pred ChHHHHHHHHHHHHHH
Q psy12250 166 KSSFLWRKRFDSFLFW 181 (235)
Q Consensus 166 ~~~~~~r~~l~~~l~~ 181 (235)
.+...+|......+.+
T Consensus 357 ~~~~~~R~~~l~~~~~ 372 (388)
T PRK07494 357 LPVQDLRAAGLHLLYS 372 (388)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 3444556665555554
No 28
>PTZ00367 squalene epoxidase; Provisional
Probab=99.82 E-value=2.8e-19 Score=165.18 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=109.5
Q ss_pred CCcEEEccCCCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhh-CCCccccccc--hhhhhhhhcCCCCccc
Q psy12250 3 PNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKY-FPDAIPLIGA--ERLVADFFSRKAAPLI 79 (235)
Q Consensus 3 ~~~~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~i~~--~~~~~~~~~~~~~~l~ 79 (235)
++..|.|.+++..++.+|++++..++.+..+.... .+.++..+++.+. .|.+.+.+.. .....+......++..
T Consensus 251 ~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~---p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~ 327 (567)
T PTZ00367 251 EQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTL---PSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNA 327 (567)
T ss_pred CCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcC---CChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHh
Confidence 34456777777778889999887665554443321 1222334444332 2332222211 0001110112233444
Q ss_pred eeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcc----------cCHHHHHH----HHHHHhHHH
Q psy12250 80 SIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYD----------EDFGKVLP----KFTEVRQHD 145 (235)
Q Consensus 80 ~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~----------~~~~~al~----~Y~~~R~~~ 145 (235)
..+..+|+ .+|++|||||||+|+|++|||+|+||+||.+|+++|.... .+++.+|+ .|++.|+++
T Consensus 328 ~~p~~~~~-~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~ 406 (567)
T PTZ00367 328 RYPPAFPS-IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTH 406 (567)
T ss_pred hCCCccCC-CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhh
Confidence 44455565 7899999999999999999999999999999999997531 14567777 999999999
Q ss_pred HHHHHHHHHHhHHHhhhhcCChHHHHHHHHHHHHH
Q psy12250 146 AEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLF 180 (235)
Q Consensus 146 ~~~~~~~s~~~~~~~~~~~~~~~~~~r~~l~~~l~ 180 (235)
+..++.+|...+..+.. ..+|+.+.+++.
T Consensus 407 a~~i~~ls~aL~~lf~~------~~lr~~~~~y~~ 435 (567)
T PTZ00367 407 ASTINILSWALYSVFSS------PALRDACLDYFS 435 (567)
T ss_pred HHHHHHHHHHHHHHhCh------HHHHHHHHHHHh
Confidence 99999999988766544 246766666655
No 29
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.82 E-value=9.9e-20 Score=161.79 Aligned_cols=162 Identities=22% Similarity=0.232 Sum_probs=105.8
Q ss_pred EEEeecCCceEEEEEEeeCCccCCC--CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEE
Q psy12250 16 MIALPNQDHSWTVTLFMPFEKFGLL--GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVL 93 (235)
Q Consensus 16 ~~~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvv 93 (235)
+..+|..++..++++..|.+..+.. .+.+++.+.+.+.++.....+... . ....+++....+.+|. .|||+
T Consensus 213 ~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~~~-~~rv~ 285 (392)
T PRK08773 213 LALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRVA---S---PRTAFPLRRQLVQQYV-SGRVL 285 (392)
T ss_pred EEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEec---C---CccEeechhhhhhhhc-CCcEE
Confidence 4457887787777776665432211 234444444444333222211110 0 1123566555667887 89999
Q ss_pred EEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccC--HHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhcCChH
Q psy12250 94 IIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DED--FGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSS 168 (235)
Q Consensus 94 LiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~--~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~ 168 (235)
|||||||+|+|+.|||+|+||+||.+|+++|.+. +.+ ...+|++|+++|+++...+..... ....+......+.
T Consensus 286 LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~-~l~~~f~~~~~~~ 364 (392)
T PRK08773 286 TLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFD-AINRVFSNDEMHL 364 (392)
T ss_pred EEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCChHH
Confidence 9999999999999999999999999999999875 223 248999999999999876666554 3334444434455
Q ss_pred HHHHHHHHHHHHHhCCC
Q psy12250 169 FLWRKRFDSFLFWMFPR 185 (235)
Q Consensus 169 ~~~r~~l~~~l~~~~p~ 185 (235)
..+|......++++.|-
T Consensus 365 ~~~r~~~l~~~~~~~~~ 381 (392)
T PRK08773 365 TLLRGSVLGLAGKLPPL 381 (392)
T ss_pred HHHHHHHHHHHhhCHHH
Confidence 66777777666665543
No 30
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.82 E-value=2.5e-19 Score=159.33 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=76.2
Q ss_pred ccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-ccCHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12250 77 PLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DEDFGKVLPKFTEVRQHDAEAICDLAMY 155 (235)
Q Consensus 77 ~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~~~~~al~~Y~~~R~~~~~~~~~~s~~ 155 (235)
++....+.+|. .|||+|||||||+|+|+.|||+|+|||||.+|+++|... ..+.+.+|+.|++.|++|++.+++.|+.
T Consensus 267 ~l~~~~~~~~~-~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r~~~~~~~s~~ 345 (390)
T TIGR02360 267 PLRSFVCEPMQ-YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALARVWKAERFSWW 345 (390)
T ss_pred eHHhhccccCc-cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45445566787 799999999999999999999999999999999999875 3468899999999999999999999998
Q ss_pred hHHHhhhhcC
Q psy12250 156 NYIEMRDLVT 165 (235)
Q Consensus 156 ~~~~~~~~~~ 165 (235)
....++..+.
T Consensus 346 ~~~~~~~~~~ 355 (390)
T TIGR02360 346 MTSLLHRFPD 355 (390)
T ss_pred HHHHhcCCCC
Confidence 7766665543
No 31
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.82 E-value=9.8e-20 Score=161.32 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=113.2
Q ss_pred EEEccCCCeEEEEeecCCceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeec
Q psy12250 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKC 83 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 83 (235)
.+.|.+++..++.+|..++.+.+++..+.+.... ..+++++.+.+.+..+.....+.. . .....+++.....
T Consensus 201 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~ 274 (388)
T PRK07608 201 AYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERASGGRLGRLEC---V---TPAAGFPLRLQRV 274 (388)
T ss_pred EEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCcee---c---CCcceeecchhhh
Confidence 4556555555666899888887766554332211 136678888887765432222211 1 1112245554555
Q ss_pred CCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcc----cCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYD----EDFGKVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 84 ~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~----~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
.+|+ .||++|||||||+|+|++|||+|+||+||.+|+++|.... .....+|+.|+++|++++..++..++.....
T Consensus 275 ~~~~-~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~ 353 (388)
T PRK07608 275 DRLV-APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRL 353 (388)
T ss_pred hhhh-cCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6786 8999999999999999999999999999999999998652 1234899999999999999999998866654
Q ss_pred hhhhcCChHHHHHHHHHHHHHH
Q psy12250 160 MRDLVTKSSFLWRKRFDSFLFW 181 (235)
Q Consensus 160 ~~~~~~~~~~~~r~~l~~~l~~ 181 (235)
+... ......+|+...+.+.+
T Consensus 354 ~~~~-~~~~~~~r~~~~~~~~~ 374 (388)
T PRK07608 354 FALP-GPLARWLRNAGMALVGA 374 (388)
T ss_pred HcCC-chHHHHHHHHHHHHHhh
Confidence 4422 22333445555554443
No 32
>PRK07538 hypothetical protein; Provisional
Probab=99.82 E-value=3.2e-19 Score=159.70 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=96.6
Q ss_pred CeEEEEeecCCc-------eEEEEEEeeCCc--------cCCCCCHHHHHHHHhhhCCC---ccccccchhhhhhhhcCC
Q psy12250 13 TFMMIALPNQDH-------SWTVTLFMPFEK--------FGLLGTARALLDFFDKYFPD---AIPLIGAERLVADFFSRK 74 (235)
Q Consensus 13 ~~~~~~~p~~~g-------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~p~---~~~~i~~~~~~~~~~~~~ 74 (235)
+..++.+|..++ .+++++..+.+. +....+.+++.+.|.+|.+. +.+++... . ...
T Consensus 208 ~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~---~~~ 281 (413)
T PRK07538 208 DGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAA---E---AIY 281 (413)
T ss_pred CCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcC---c---cee
Confidence 334667887642 455555543321 11224567777777776543 33333211 1 122
Q ss_pred CCccceee-cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHH
Q psy12250 75 AAPLISIK-CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLA 153 (235)
Q Consensus 75 ~~~l~~~~-~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s 153 (235)
.+++.... .++|. .|||+|||||||+|+|++|||+|+||+||.+|+++|... .+++.+|+.|+++|++++..++..+
T Consensus 282 ~~p~~~~~~~~~w~-~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~-~~~~~aL~~Ye~~R~~~~~~~~~~s 359 (413)
T PRK07538 282 EYPMVDRDPLPRWT-RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH-GDPEAALAAYEAERRPATAQIVLAN 359 (413)
T ss_pred eccccccCCCCccc-CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhHHHHHHHHHh
Confidence 24555443 35686 799999999999999999999999999999999999886 4689999999999999999999998
Q ss_pred HH
Q psy12250 154 MY 155 (235)
Q Consensus 154 ~~ 155 (235)
+.
T Consensus 360 ~~ 361 (413)
T PRK07538 360 RL 361 (413)
T ss_pred hh
Confidence 75
No 33
>PRK06753 hypothetical protein; Provisional
Probab=99.81 E-value=5.2e-19 Score=155.98 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=101.9
Q ss_pred EEEccCCCeEEEEeecCCceEEEEEEeeCC-ccCCC--CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCcccee-
Q psy12250 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFE-KFGLL--GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISI- 81 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~- 81 (235)
.++|..++ .+..+|..++..++.+..+.+ ..... .+.+++.+.|+++.+.+.+++..... ... ..+++...
T Consensus 188 ~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~ 262 (373)
T PRK06753 188 KEYWGTKG-RFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSE-TGI---LHHDIYDLK 262 (373)
T ss_pred EEEEcCCC-EEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCc-ccc---eeecccccc
Confidence 34553333 345578877765554443322 11111 35678888888776666555532111 010 11222222
Q ss_pred ecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhh
Q psy12250 82 KCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMR 161 (235)
Q Consensus 82 ~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~ 161 (235)
.+.+|. .|||+|||||||+|+|+.|||+|+||+||..|+++|.. .+++.+|+.|++.|++++..+++.|+.....+.
T Consensus 263 ~~~~~~-~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~--~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 339 (373)
T PRK06753 263 PLKSFV-YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA--YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQ 339 (373)
T ss_pred cccccc-CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHh
Confidence 235676 89999999999999999999999999999999999975 478999999999999999999999987765544
No 34
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.81 E-value=2.6e-19 Score=166.86 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=107.6
Q ss_pred EEEccCCCeEEEEeecCCceEEEEEEeeCCc---cCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceee
Q psy12250 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFEK---FGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIK 82 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~ 82 (235)
...|.|+..+++.+|..++.+++..+.+... .......+++++.|.+|.|.+.+++...+. .. ...++++...
T Consensus 284 ~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~-~~---i~~~~iyd~~ 359 (668)
T PLN02927 284 YRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEE-DA---ILRRDIYDRS 359 (668)
T ss_pred eEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCcc-cc---ceeeeEEecc
Confidence 3456777777888888777665555443321 111235677788888887777777653211 11 1224455443
Q ss_pred c-CCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---------ccCHHHHHHHHHHHhHHHHHHHHHH
Q psy12250 83 C-NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---------DEDFGKVLPKFTEVRQHDAEAICDL 152 (235)
Q Consensus 83 ~-~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---------~~~~~~al~~Y~~~R~~~~~~~~~~ 152 (235)
+ .+|+ .|||+|+|||||+|+|+.|||+|+|||||..|+.+|... ..+++.+|+.|+++|++++..++..
T Consensus 360 p~~~W~-~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ 438 (668)
T PLN02927 360 PGFTWG-KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAM 438 (668)
T ss_pred CCCccc-cCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3687 899999999999999999999999999999999999874 1368899999999999999999999
Q ss_pred HHHhH
Q psy12250 153 AMYNY 157 (235)
Q Consensus 153 s~~~~ 157 (235)
++...
T Consensus 439 ar~a~ 443 (668)
T PLN02927 439 ARMAA 443 (668)
T ss_pred HHHHH
Confidence 77654
No 35
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.80 E-value=3.6e-19 Score=157.16 Aligned_cols=156 Identities=25% Similarity=0.323 Sum_probs=107.2
Q ss_pred EEEeecCCceEEEEEEeeCCccC--CCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEE
Q psy12250 16 MIALPNQDHSWTVTLFMPFEKFG--LLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVL 93 (235)
Q Consensus 16 ~~~~p~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvv 93 (235)
+..+|..++.+++++..+.+... ...+.+++.+.+.+.++.....+.. .. ....+++....+.+|. .|||+
T Consensus 207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~-~~~v~ 279 (385)
T TIGR01988 207 LALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITL---VG---ERHAFPLSLTHAKRYV-APRLA 279 (385)
T ss_pred EEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEe---cc---Ccceeechhhhhhhee-cCceE
Confidence 44589888888887776543211 1134667777776655433222211 11 1223555555566786 89999
Q ss_pred EEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccC--HHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhcCChH
Q psy12250 94 IIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DED--FGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSS 168 (235)
Q Consensus 94 LiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~--~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~ 168 (235)
|+|||||+|+|++|||+|+||+||.+|+++|... +.+ .+.+|+.|+++|++++..++..++.....+.. .....
T Consensus 280 LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~ 358 (385)
T TIGR01988 280 LIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSN-DFPPL 358 (385)
T ss_pred EEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcHH
Confidence 9999999999999999999999999999999875 122 47999999999999999999998876654432 23333
Q ss_pred HHHHHHHHHHH
Q psy12250 169 FLWRKRFDSFL 179 (235)
Q Consensus 169 ~~~r~~l~~~l 179 (235)
..+|..+.+.+
T Consensus 359 ~~~r~~~~~~~ 369 (385)
T TIGR01988 359 RLLRNLGLRLL 369 (385)
T ss_pred HHHHHHHHHHH
Confidence 44455444433
No 36
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.80 E-value=3.1e-19 Score=158.87 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=102.1
Q ss_pred cCCCeEEEEeecCCceEEEEEEeeCCccCCC--CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcc
Q psy12250 10 PRGTFMMIALPNQDHSWTVTLFMPFEKFGLL--GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYH 87 (235)
Q Consensus 10 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (235)
+++.+ ..+|..++.+++++..+.+..+.. .+.+.+.+.+.+.+....+.+.. .. ....+++......+|+
T Consensus 207 ~~g~~--~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~ 278 (403)
T PRK07333 207 PAGPF--AILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLGELKV---LG---KRRAFPLGLTLARSFV 278 (403)
T ss_pred CCCce--EEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceEe---cc---CccEeechhhhhhhcc
Confidence 44444 457888888777665443221111 12333333333333222111110 01 1112444444556787
Q ss_pred cCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcc-----cCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhh
Q psy12250 88 KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYD-----EDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRD 162 (235)
Q Consensus 88 ~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~-----~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~ 162 (235)
.|||+|+|||||+++|+.|||+|+||+||.+|+++|.... ...+.+|+.|+++|++++..++..++.....+..
T Consensus 279 -~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~ 357 (403)
T PRK07333 279 -APRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSN 357 (403)
T ss_pred -CCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999998751 2368999999999999999999998866554432
Q ss_pred hcCChHHHHHHHHHHHHHH
Q psy12250 163 LVTKSSFLWRKRFDSFLFW 181 (235)
Q Consensus 163 ~~~~~~~~~r~~l~~~l~~ 181 (235)
. ......+|......+..
T Consensus 358 ~-~~~~~~~r~~~~~~~~~ 375 (403)
T PRK07333 358 D-STLLRSVRDIGLGLVDR 375 (403)
T ss_pred C-chHHHHHHHHHHHHHhc
Confidence 2 22333445554444433
No 37
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.80 E-value=6e-19 Score=156.61 Aligned_cols=164 Identities=21% Similarity=0.208 Sum_probs=109.8
Q ss_pred cCCCeEEEEeecCCceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcc
Q psy12250 10 PRGTFMMIALPNQDHSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYH 87 (235)
Q Consensus 10 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (235)
+.+++.+ +|..++..+++++.+...... ..+.+++.+.+.+.+|.....+.. . ....+|+......+|.
T Consensus 209 ~~g~~~~--~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~----~~~~~pl~~~~~~~~~ 279 (391)
T PRK08020 209 PSGPRAF--LPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHFPARLGAVTP---V----AAGAFPLTRRHALQYV 279 (391)
T ss_pred CCCCEEE--eECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhccceEe---c----cccEeecceeehhhhc
Confidence 4455444 677666666666543321111 135667766666655433222211 1 1233566666677887
Q ss_pred cCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccC--HHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhh
Q psy12250 88 KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DED--FGKVLPKFTEVRQHDAEAICDLAMYNYIEMRD 162 (235)
Q Consensus 88 ~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~--~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~ 162 (235)
.||++|+|||||+|+|+.|||+|+||+||.+|+++|.+. +.+ ...+|+.|+++|+++...++..+......+.
T Consensus 280 -~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~- 357 (391)
T PRK08020 280 -QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFS- 357 (391)
T ss_pred -cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 899999999999999999999999999999999999875 223 4689999999999999888877665544433
Q ss_pred hcCChHHHHHHHHHHHHHHhCC
Q psy12250 163 LVTKSSFLWRKRFDSFLFWMFP 184 (235)
Q Consensus 163 ~~~~~~~~~r~~l~~~l~~~~p 184 (235)
....+...+|+.....++.+.|
T Consensus 358 ~~~~~~~~~R~~~l~~~~~~~~ 379 (391)
T PRK08020 358 NNLPPLRFARNLGLMAAQRAGV 379 (391)
T ss_pred CCchHHHHHHHHHHHHHhcCHH
Confidence 2234555667777666665443
No 38
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.80 E-value=1.3e-18 Score=161.05 Aligned_cols=137 Identities=15% Similarity=0.242 Sum_probs=98.0
Q ss_pred EEEEeecCCceEEEEEEeeCCc-cCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEE
Q psy12250 15 MMIALPNQDHSWTVTLFMPFEK-FGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVL 93 (235)
Q Consensus 15 ~~~~~p~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvv 93 (235)
.++..|..++.|++.+..+.+. .....+.+++.+.+++..+...+. +......+.+....+.+|+ .|||+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~-~gRV~ 302 (547)
T PRK08132 232 SVLLHRQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGEDVPF--------ELEWVSVYTFQCRRMDRFR-HGRVL 302 (547)
T ss_pred EEEEEeCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCCCCe--------eEEEEEeeeeeeeeecccc-cccEE
Confidence 3444566677777655443221 112245667777777665521110 0111123455556677887 89999
Q ss_pred EEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 94 IIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 94 LiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
|+|||||.|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|+++++.+++.+..+...+
T Consensus 303 L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~ 371 (547)
T PRK08132 303 FAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDFI 371 (547)
T ss_pred EEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999875 455789999999999999999999988766544
No 39
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.79 E-value=6.7e-19 Score=155.67 Aligned_cols=157 Identities=21% Similarity=0.183 Sum_probs=105.6
Q ss_pred EEEeecCCc-eEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcE
Q psy12250 16 MIALPNQDH-SWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKV 92 (235)
Q Consensus 16 ~~~~p~~~g-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grv 92 (235)
+..+|..++ .+++++..+.+.... ..+.+++.+.+.+.++.....+.. .. ....+++......+|. .|||
T Consensus 206 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~-~~rv 278 (382)
T TIGR01984 206 LALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQ---VG---ERKTYPLKLRIAETHV-HPRV 278 (382)
T ss_pred eEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEE---cC---CccEeecchhhhhhee-cCCE
Confidence 455888887 777777665432211 124556666665554432221111 11 1223555555566787 7999
Q ss_pred EEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcc--cCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhcCChHHH
Q psy12250 93 LIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYD--EDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFL 170 (235)
Q Consensus 93 vLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 170 (235)
+|+|||||+|+|++|||+|+||+||.+|+++|.... ...+.+|+.|+++|++++..++..+......+... ......
T Consensus 279 ~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 357 (382)
T TIGR01984 279 VLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNH-IPLLRA 357 (382)
T ss_pred EEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHH
Confidence 999999999999999999999999999999998762 23478999999999999999999998766544322 223334
Q ss_pred HHHHHHHHHH
Q psy12250 171 WRKRFDSFLF 180 (235)
Q Consensus 171 ~r~~l~~~l~ 180 (235)
+|+...+.+.
T Consensus 358 ~r~~~~~~~~ 367 (382)
T TIGR01984 358 LRNLGLLALE 367 (382)
T ss_pred HHHHHHHHHh
Confidence 4555444443
No 40
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.79 E-value=1e-18 Score=157.64 Aligned_cols=108 Identities=23% Similarity=0.241 Sum_probs=84.8
Q ss_pred CCccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCH--HHHHHHHHHHhHHHHHHH
Q psy12250 75 AAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDF--GKVLPKFTEVRQHDAEAI 149 (235)
Q Consensus 75 ~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~--~~al~~Y~~~R~~~~~~~ 149 (235)
.+++....+.+|. .+|++|+|||||+++|+.|||+|+||+||.+|+++|... +.++ ..+|+.|+++|++++..+
T Consensus 319 ~~~~~~~~~~~~~-~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v 397 (437)
T TIGR01989 319 AFPLGLGHADEYV-TKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVL 397 (437)
T ss_pred eEEecccchhhcc-CCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 3455555566787 899999999999999999999999999999999999875 2333 479999999999999999
Q ss_pred HHHHHHhHHHhhhhcCChHHHHHHHHHHHHHHhCC
Q psy12250 150 CDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFP 184 (235)
Q Consensus 150 ~~~s~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~p 184 (235)
+..+......+.. .......+|......++.+.|
T Consensus 398 ~~~t~~l~~l~~~-~~~~~~~~R~~~l~~~~~~~~ 431 (437)
T TIGR01989 398 LGLVDKLHKLYAT-DFPPVVALRTFGLNLTNYIGP 431 (437)
T ss_pred HHHHHHHHHHHcC-CccHHHHHHHHHHHHhhhCHH
Confidence 9999876554432 233455667776666665443
No 41
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.78 E-value=4.8e-18 Score=159.40 Aligned_cols=146 Identities=15% Similarity=0.110 Sum_probs=102.2
Q ss_pred CCCeEEEEeecCCc-eEEEEEEeeC---Cc--cCCCCCHHHHHHHHhhhCCC-ccccccchhhhhhhhcCCCCccceeec
Q psy12250 11 RGTFMMIALPNQDH-SWTVTLFMPF---EK--FGLLGTARALLDFFDKYFPD-AIPLIGAERLVADFFSRKAAPLISIKC 83 (235)
Q Consensus 11 g~~~~~~~~p~~~g-~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~p~-~~~~i~~~~~~~~~~~~~~~~l~~~~~ 83 (235)
+....++.+|.+++ .+++++.... +. .....+.+++.+.+++.++. ..+. .. + .....+++..+.+
T Consensus 252 ~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~-~~---v---~w~s~y~i~~r~a 324 (634)
T PRK08294 252 ASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV-KE---V---AWWSVYEVGQRLT 324 (634)
T ss_pred CCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce-eE---E---eEEecccccceeh
Confidence 33345666898877 4666554321 11 11235789999999886543 2221 11 1 1112233333333
Q ss_pred CCc---------ccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHH
Q psy12250 84 NPY---------HKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDL 152 (235)
Q Consensus 84 ~~~---------~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~ 152 (235)
.+| +..|||+|+|||||+++|.+|||||+||+||.+|+++|... +...+.+|+.|+++|+++++.+++.
T Consensus 325 ~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~~li~~ 404 (634)
T PRK08294 325 DRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQELIDF 404 (634)
T ss_pred hhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333 23699999999999999999999999999999999999876 4567899999999999999999999
Q ss_pred HHHhHHHhhhh
Q psy12250 153 AMYNYIEMRDL 163 (235)
Q Consensus 153 s~~~~~~~~~~ 163 (235)
++.....+...
T Consensus 405 ~~~~~~l~~~~ 415 (634)
T PRK08294 405 DREWSTMMAAP 415 (634)
T ss_pred HHHHHHHhccC
Confidence 98776665443
No 42
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.78 E-value=7.3e-19 Score=152.61 Aligned_cols=79 Identities=33% Similarity=0.518 Sum_probs=68.4
Q ss_pred CCCccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHH
Q psy12250 74 KAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICD 151 (235)
Q Consensus 74 ~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~ 151 (235)
..+++....+.+|. .|||+|||||||+|+|+.|||+|+||+||.+|+++|... +...+.+|+.|+++|+++++.+++
T Consensus 276 ~~~~~~~~~~~~~~-~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~ 354 (356)
T PF01494_consen 276 SAWPIPQRVADRWV-KGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQ 354 (356)
T ss_dssp EEEEEEEEEESSSE-ETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccc-cceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677778887 799999999999999999999999999999999999987 456789999999999999999987
Q ss_pred HH
Q psy12250 152 LA 153 (235)
Q Consensus 152 ~s 153 (235)
.+
T Consensus 355 ~~ 356 (356)
T PF01494_consen 355 FD 356 (356)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 43
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.78 E-value=1.1e-18 Score=154.76 Aligned_cols=157 Identities=22% Similarity=0.213 Sum_probs=103.5
Q ss_pred EEEeecCCceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEE
Q psy12250 16 MIALPNQDHSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVL 93 (235)
Q Consensus 16 ~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvv 93 (235)
+..+|.++|++++++..+.+.... ..+.+++.+.+.+.++.....+.. . .....+++......+|. .||++
T Consensus 213 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~-~grv~ 285 (395)
T PRK05732 213 LALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITH---A---GKRSAYPLALVTAAQQI-SHRLA 285 (395)
T ss_pred EEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceee---c---CCcceecccccchhhhc-cCcEE
Confidence 345888888887777665432111 124455555555544321111110 0 11223455555666787 89999
Q ss_pred EEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccC--HHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhcCChH
Q psy12250 94 IIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DED--FGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSS 168 (235)
Q Consensus 94 LiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~--~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~ 168 (235)
|+|||||+|+|++|||+|+||+||.+|+++|... ..+ .+.+|+.|+++|++++..++..++.....+... ....
T Consensus 286 LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~ 364 (395)
T PRK05732 286 LVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANR-WAPL 364 (395)
T ss_pred EEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHH
Confidence 9999999999999999999999999999999754 122 358999999999999999999988766555322 2233
Q ss_pred HHHHHHHHHHHH
Q psy12250 169 FLWRKRFDSFLF 180 (235)
Q Consensus 169 ~~~r~~l~~~l~ 180 (235)
..+|+.+...+.
T Consensus 365 ~~~r~~~~~~~~ 376 (395)
T PRK05732 365 VVGRNLGLMAMD 376 (395)
T ss_pred HHHHHHHHHHHc
Confidence 344554444333
No 44
>PRK07190 hypothetical protein; Provisional
Probab=99.76 E-value=9.2e-18 Score=153.21 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=98.5
Q ss_pred EEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhC-CCccccccchhhhhhhhcCCCCccceeecCCcccCCcEEE
Q psy12250 16 MIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYF-PDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLI 94 (235)
Q Consensus 16 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvvL 94 (235)
++.+|.+++..++++..+ ....+.+++.+.+.+.. |.-.++ . +......|++..+.+.+|.+.|||+|
T Consensus 211 ~~~~p~~~~~~r~~~~~~----~~~~t~~~~~~~l~~~~~~~~~~~-~------~~~w~s~~~~~~r~a~~~r~~gRV~L 279 (487)
T PRK07190 211 VAWIPREGEIDRFYVRMD----TKDFTLEQAIAKINHAMQPHRLGF-K------EIVWFSQFSVKESVAEHFFIQDRIFL 279 (487)
T ss_pred EEEEECCCCEEEEEEEcC----CCCCCHHHHHHHHHHhcCCCCCce-E------EEEEEEEeeeCcEehhhcCcCCcEEE
Confidence 444677666655433221 12246778888777743 432221 1 11122346777888888853699999
Q ss_pred EccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 95 IGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 95 iGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
+|||||.++|++|||||+||+||.+|+++|... +...+.+|+.|+++|++.++.++..+......+
T Consensus 280 aGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 280 AGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELVRST 347 (487)
T ss_pred EecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999876 445679999999999999999999998765544
No 45
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.72 E-value=3.1e-17 Score=157.04 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=93.3
Q ss_pred EEEeecCCceEEEEEEeeCCccCC-----C---CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcc
Q psy12250 16 MIALPNQDHSWTVTLFMPFEKFGL-----L---GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYH 87 (235)
Q Consensus 16 ~~~~p~~~g~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (235)
...||.+++...+++..+.+.+.. . ...+.+.+.|.++.|. .+++....... ...+..+....+.+|+
T Consensus 188 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~-~~li~~~~~~~---~~~w~~~~~~~~~~w~ 263 (765)
T PRK08255 188 AHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDG-HPLMSNASHLR---GSAWINFPRVVCERWV 263 (765)
T ss_pred EEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCC-Ccccccccccc---cceeeecceeccCCCc
Confidence 345676665444444444332111 1 1235566666666554 23333211100 0111223334456887
Q ss_pred cCCc----EEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy12250 88 KNDK----VLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNY 157 (235)
Q Consensus 88 ~~gr----vvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~ 157 (235)
.|| |+|||||||+|+|+.|||+|+|||||.+|+++|.....+++.+|+.|++.|++++..+++.|+.+.
T Consensus 264 -~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~al~~ye~~R~~r~~~~~~~s~~~~ 336 (765)
T PRK08255 264 -HWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHPGDLPAALAAYEEERRVEVLRIQNAARNST 336 (765)
T ss_pred -cCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788 999999999999999999999999999999999887557999999999999999999999998654
No 46
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.67 E-value=1.4e-15 Score=127.19 Aligned_cols=174 Identities=19% Similarity=0.194 Sum_probs=128.6
Q ss_pred CCcEEEccCCCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhh-CCCccccccch--hhhhhhhcCCCCccc
Q psy12250 3 PNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKY-FPDAIPLIGAE--RLVADFFSRKAAPLI 79 (235)
Q Consensus 3 ~~~~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~i~~~--~~~~~~~~~~~~~l~ 79 (235)
|++-|+..+++.-++.|+++.+..++.+-.|.+.... .+.+++++++.+. .|.+.+.+... +.+++ ...+..|..
T Consensus 43 ~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~-~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~-~rirsMPn~ 120 (276)
T PF08491_consen 43 PNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPS-VSNGELKEYLREVVAPQLPEELRPSFEKALED-GRIRSMPNS 120 (276)
T ss_pred CCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCC-ccchHHHHHHHHHHHhhchHHHHHHHHHHhcc-CCcceeccc
Confidence 6788888888888889999999999988887764333 2456777777763 45555544321 11111 133344554
Q ss_pred eeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-----ccCHHHHHHHHHHHhHHHHHHHHHHHH
Q psy12250 80 SIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-----DEDFGKVLPKFTEVRQHDAEAICDLAM 154 (235)
Q Consensus 80 ~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-----~~~~~~al~~Y~~~R~~~~~~~~~~s~ 154 (235)
..+..+.. ..+++|+|||++..+|.+|+||++|+.|+..|+++|... ...+.++++.|..+|++....+.-++.
T Consensus 121 ~lp~~~~~-~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~ 199 (276)
T PF08491_consen 121 FLPASPNW-KPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQ 199 (276)
T ss_pred ccCCCCCC-CCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 44444444 678999999999999999999999999999999999977 123678999999999999999999999
Q ss_pred HhHHHhhhhcCChHHHHHHHHHHHHH
Q psy12250 155 YNYIEMRDLVTKSSFLWRKRFDSFLF 180 (235)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~l~~~l~ 180 (235)
..|..+.... .....+|+.+.++++
T Consensus 200 aLY~lF~a~~-~~l~~Lr~gcf~Yf~ 224 (276)
T PF08491_consen 200 ALYSLFAADD-DYLKALRQGCFKYFQ 224 (276)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 8887765543 234467877777766
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.40 E-value=1.6e-12 Score=110.40 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=65.7
Q ss_pred eEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCcccee-ecCCcccCCcE
Q psy12250 14 FMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISI-KCNPYHKNDKV 92 (235)
Q Consensus 14 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~~~~~~grv 92 (235)
..++.+|.+++++++.+....+. ...+.++..+.+.+.+|.+.. .+..+.. .+++... ...+|+ .+|+
T Consensus 195 ~~~~~~P~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~----~~~~~~~----~~~~~~~~~~~~~~-~~~v 263 (295)
T TIGR02032 195 GYGWVFPKGDGTANVGVGSRSAE--EGEDLKKYLKDFLARRPELKD----AETVEVI----GAPIPIGRPDDKTV-RGNV 263 (295)
T ss_pred ceEEEEeCCCCeEEEeeeeccCC--CCCCHHHHHHHHHHhCccccc----CcEEeee----ceeeccCCCCCccc-cCCE
Confidence 45677999888888876654332 234445555555555565222 1111111 1222222 234565 8999
Q ss_pred EEEccCccccCchhhhhhhhhhhhHHHHHHHH
Q psy12250 93 LIIGDAAHAMVPFYGQGMNAGFEDCCILQDLM 124 (235)
Q Consensus 93 vLiGDAAH~~~P~~GqG~n~aleDa~~La~~L 124 (235)
+|||||||.++|+.|||+|+||+||..++++|
T Consensus 264 ~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 264 LLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred EEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999875
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.24 E-value=2.3e-10 Score=101.77 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=85.6
Q ss_pred CCcEEEccC----CCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCcc
Q psy12250 3 PNFLHIWPR----GTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPL 78 (235)
Q Consensus 3 ~~~~~~w~g----~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l 78 (235)
++..++|.+ +++..+++|.++ ..++..... ....+.+++.+.+.+..+ +.. .+.... ...++
T Consensus 188 ~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~~~~----~~~~~~~~~~~~l~~~~~-~~~----~~~~~~----~~~~i 253 (388)
T TIGR02023 188 EELADVYYGGEVSPDFYGWVFPKGD-HIAVGTGTG----THGFDAKQLQANLRRRAG-LDG----GQTIRR----EAAPI 253 (388)
T ss_pred CCeEEEEECCCcCCCceEEEeeCCC-eeEEeEEEC----CCCCCHHHHHHHHHHhhC-CCC----ceEeee----eeEec
Confidence 445555533 234567788864 445544221 112456677777777654 110 111110 00112
Q ss_pred ceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-ccCHHHHHHHHHHHhHHHHHHHHHHH
Q psy12250 79 ISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DEDFGKVLPKFTEVRQHDAEAICDLA 153 (235)
Q Consensus 79 ~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~~~~~al~~Y~~~R~~~~~~~~~~s 153 (235)
+.....+|. .++++|+|||||.++|++|||++.||+++..+++.+.+. ..+-...|+.|++..+.........+
T Consensus 254 p~~~~~~~~-~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~~~~~~~~~ 328 (388)
T TIGR02023 254 PMKPRPRWD-FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKLYGTTFRVL 328 (388)
T ss_pred ccccccccc-CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334565 799999999999999999999999999999999999876 22235779999998877665555444
No 49
>KOG1298|consensus
Probab=99.13 E-value=1.2e-09 Score=94.53 Aligned_cols=176 Identities=17% Similarity=0.214 Sum_probs=129.3
Q ss_pred CCCcEEEccCCCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhh-hCCCccccccch--hhhhhhhcCCCCcc
Q psy12250 2 DPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDK-YFPDAIPLIGAE--RLVADFFSRKAAPL 78 (235)
Q Consensus 2 ~~~~~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~i~~~--~~~~~~~~~~~~~l 78 (235)
.|+..|+-.+++.-++.||+.....+|.+-.|.+...... ..|+..++++ ..|.+.+.++.. +.++. ..++..|-
T Consensus 238 ~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~-~gem~~~mk~~v~PqiP~~lR~~F~~av~~-g~irsmpn 315 (509)
T KOG1298|consen 238 APNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIA-NGEMATYMKESVAPQIPEKLRESFLEAVDE-GNIRSMPN 315 (509)
T ss_pred CCCcceEEecCCCcEEEEEecchheEEEEecCcccCCccc-chhHHHHHHHhhCcCCCHHHHHHHHHHhhc-cchhcCcc
Confidence 4778898888888889999999989998887776554433 3466666665 456655554321 11111 12233344
Q ss_pred ceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-----ccCHHHHHHHHHHHhHHHHHHHHHHH
Q psy12250 79 ISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-----DEDFGKVLPKFTEVRQHDAEAICDLA 153 (235)
Q Consensus 79 ~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-----~~~~~~al~~Y~~~R~~~~~~~~~~s 153 (235)
...++.... ..+++|+|||-..-+|.+|-||..|+.|+..|.+.|... .+.+.+.++.|...|++....+..++
T Consensus 316 ~~mpa~~~~-~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa 394 (509)
T KOG1298|consen 316 SSMPATLND-KKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLA 394 (509)
T ss_pred ccCCCCcCC-CCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 444443444 788999999999999999999999999999999999875 23466888999999999999999999
Q ss_pred HHhHHHhhhhcCChHHHHHHHHHHHHH
Q psy12250 154 MYNYIEMRDLVTKSSFLWRKRFDSFLF 180 (235)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~r~~l~~~l~ 180 (235)
...++.+..........+|+.+..++.
T Consensus 395 ~Aly~vf~as~dea~~~mr~gCfdYl~ 421 (509)
T KOG1298|consen 395 NALYQVFVASTDEARKAMRKGCFDYLK 421 (509)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 988887766555666677777766665
No 50
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.10 E-value=2.6e-09 Score=96.87 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=58.2
Q ss_pred cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-cc---C-HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy12250 83 CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DE---D-FGKVLPKFTEVRQHDAEAICDLAMYNY 157 (235)
Q Consensus 83 ~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~---~-~~~al~~Y~~~R~~~~~~~~~~s~~~~ 157 (235)
..+|. .||++|+|||||.++|++|+|++.||.++..+++.+.+. .. + ....|+.|++..+.........+....
T Consensus 303 ~~~~~-~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~ 381 (450)
T PLN00093 303 RPRRV-RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQ 381 (450)
T ss_pred cccee-CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34565 789999999999999999999999999999999999875 11 1 246789999877766655555554433
No 51
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.07 E-value=3.6e-09 Score=94.56 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=56.2
Q ss_pred CCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---cc--CHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12250 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DE--DFGKVLPKFTEVRQHDAEAICDLAMY 155 (235)
Q Consensus 84 ~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~--~~~~al~~Y~~~R~~~~~~~~~~s~~ 155 (235)
.+|. .++++|+|||||.++|++|+|++.||.++..+++.+.+. ++ .....|+.|++..+.........+..
T Consensus 265 ~~~~-~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~ 340 (398)
T TIGR02028 265 PRRV-VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDL 340 (398)
T ss_pred ccEE-CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 799999999999999999999999999999999999875 22 13577999998766555555554443
No 52
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.03 E-value=6e-09 Score=92.47 Aligned_cols=125 Identities=13% Similarity=0.030 Sum_probs=76.4
Q ss_pred EEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEEE
Q psy12250 15 MMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLI 94 (235)
Q Consensus 15 ~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvvL 94 (235)
.++++|.+++++.+...... .....+.+++.+.+.++.....-...... ..+. ...|+... .++. .+|+++
T Consensus 196 f~~~lP~~~~~~~v~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~~i~-~~~~---~~iP~~~~--~~~~-~~rv~l 266 (388)
T TIGR01790 196 FLYAMPLGSTRVFIEETSLA--DRPALPRDRLRQRILARLNAQGWQIKTIE-EEEW---GALPVGLP--GPFL-PQRVAA 266 (388)
T ss_pred eEEEeecCCCeEEEEecccc--CCCCCCHHHHHHHHHHHHHHcCCeeeEEE-eeee---EEEecccC--CCcc-CCCeee
Confidence 45678887777655322111 11223566777666665432211010000 0111 11233221 1344 799999
Q ss_pred EccCccccCchhhhhhhhhhhhHHHHHHHHHhc-ccCHHHHHHHHHHHhHHHHHH
Q psy12250 95 IGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DEDFGKVLPKFTEVRQHDAEA 148 (235)
Q Consensus 95 iGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~~~~~al~~Y~~~R~~~~~~ 148 (235)
||||||.++|.+|+|++.|++|+..|++.|.++ ..+...+++.|++..+++..+
T Consensus 267 iGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 267 FGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTERRR 321 (388)
T ss_pred eechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHHHHH
Confidence 999999999999999999999999999999876 344578888887665554444
No 53
>KOG3855|consensus
Probab=98.87 E-value=1.6e-09 Score=94.46 Aligned_cols=80 Identities=33% Similarity=0.447 Sum_probs=63.7
Q ss_pred CccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHH--HHHHHHHHHhHHHHHHHH
Q psy12250 76 APLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFG--KVLPKFTEVRQHDAEAIC 150 (235)
Q Consensus 76 ~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~--~al~~Y~~~R~~~~~~~~ 150 (235)
+|+.-.....+. ..|+.|+|||||-++|..|||.|+++.|+..|...|+.+ +.|+. .-|+-|+.+|.+....+.
T Consensus 357 FPLgf~ha~~yV-~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~~ll 435 (481)
T KOG3855|consen 357 FPLGFGHADEYV-TDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLL 435 (481)
T ss_pred cccccccHHHhc-CCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhcchHH
Confidence 344444444554 899999999999999999999999999999999999987 55554 678999999977766666
Q ss_pred HHHHHh
Q psy12250 151 DLAMYN 156 (235)
Q Consensus 151 ~~s~~~ 156 (235)
......
T Consensus 436 ~~vdkl 441 (481)
T KOG3855|consen 436 GAVDKL 441 (481)
T ss_pred HHHHHH
Confidence 555433
No 54
>PRK11445 putative oxidoreductase; Provisional
Probab=98.86 E-value=7.4e-09 Score=90.97 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHH
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHD 145 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~ 145 (235)
++|++|||||||.++|++|||+|.|++|+..|++.|.+. ....++.|++..+.-
T Consensus 263 ~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~---~~~~~~~y~~~~~~~ 316 (351)
T PRK11445 263 KDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ---PEKLNTAYWRKTRKL 316 (351)
T ss_pred CCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc---ccchHHHHHHHHHHH
Confidence 589999999999999999999999999999999999764 366788998875443
No 55
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.85 E-value=1.6e-08 Score=89.63 Aligned_cols=131 Identities=15% Similarity=0.018 Sum_probs=79.8
Q ss_pred CCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCC----CccccccchhhhhhhhcCCCCcccee--ecCC
Q psy12250 12 GTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFP----DAIPLIGAERLVADFFSRKAAPLISI--KCNP 85 (235)
Q Consensus 12 ~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~i~~~~~~~~~~~~~~~~l~~~--~~~~ 85 (235)
+...+.++|.++++..+=.+... .....+.+++.+.+.++.- ...+++.. +.. ..|+... ....
T Consensus 177 g~~F~Y~lP~~~~~~lvE~T~~s--~~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~-----e~g---~iPm~~~~~~~~~ 246 (370)
T TIGR01789 177 GYRFVYVLPLGSHDLLIEDTYYA--DDPLLDRNALSQRIDQYARANGWQNGTPVRH-----EQG---VLPVLLGGDFSAY 246 (370)
T ss_pred CceEEEECcCCCCeEEEEEEecc--CCCCCCHHHHHHHHHHHHHHhCCCceEEEEe-----eee---EEeeecCCCcccc
Confidence 34445557777776554211111 1122456777666665531 22222221 111 1233221 0123
Q ss_pred cccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHH
Q psy12250 86 YHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDL 152 (235)
Q Consensus 86 ~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~ 152 (235)
|...++++++|||||.++|.+|||++.+++||..|++++...+.+++.++..|...|+++.....-+
T Consensus 247 ~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (370)
T TIGR01789 247 QDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLSSEQLAAFIDSRARRHWSKTGYYRLL 313 (370)
T ss_pred cccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcCccchhhhhhHHHHHHHHHhHHHHHH
Confidence 4435669999999999999999999999999999999996233467778899998887777654433
No 56
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.56 E-value=2.5e-06 Score=76.21 Aligned_cols=139 Identities=15% Similarity=0.147 Sum_probs=85.3
Q ss_pred CCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCc
Q psy12250 12 GTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDK 91 (235)
Q Consensus 12 ~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~gr 91 (235)
.....+.+|.+++.+++.+....+. ......-+..+.|.+..+ ..+.+......+.... ..|.......++. .++
T Consensus 196 ~~Gy~wifP~~~~~~~VG~g~~~~~-~~~~~~~~~l~~f~~~~~-~~~~~~~~~~~~~~~~--~ip~~g~~~~~~~-~~~ 270 (396)
T COG0644 196 PGGYGWIFPLGDGHANVGIGVLLDD-PSLSPFLELLERFKEHPA-IRKLLLGGKILEYAAG--GIPEGGPASRPLV-GDG 270 (396)
T ss_pred CCceEEEEECCCceEEEEEEEecCC-cCCCchHHHHHHHHhCcc-cchhccCCceEEEeee--ecccCCcCCCccc-cCC
Confidence 3455677999999999988776554 222211144444444322 2221110111110000 0112111111243 789
Q ss_pred EEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-ccCHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy12250 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DEDFGKVLPKFTEVRQHDAEAICDLAMYN 156 (235)
Q Consensus 92 vvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~~~~~al~~Y~~~R~~~~~~~~~~s~~~ 156 (235)
++||||||-..+|+.|.|+..||..|..+++.+.+. ..+ ...|..|++..+.....-.......
T Consensus 271 ~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-~~~l~~Y~~~~~~~~~~~~~~~~~~ 335 (396)
T COG0644 271 VLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-EEALAEYERLLRKSLAREDLKSLRL 335 (396)
T ss_pred EEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999987 223 6778889888776665555554443
No 57
>PRK10015 oxidoreductase; Provisional
Probab=98.41 E-value=4.8e-06 Score=75.25 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=75.3
Q ss_pred EeecCCceEEEEEEeeCCcc-CCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceee-cCCcccCCcEEEE
Q psy12250 18 ALPNQDHSWTVTLFMPFEKF-GLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIK-CNPYHKNDKVLII 95 (235)
Q Consensus 18 ~~p~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~grvvLi 95 (235)
.+|.+ +..++.+.+..... ....++.++.+.|+ .+|.+.+++...+..+.-.. ..|..... .++.. .++++|+
T Consensus 226 ~~~~~-d~v~vGv~~~~~~~~~~~~~~~~~l~~~~-~~p~~~~~~~~~~~~e~~~~--~ip~gg~~~~~~~~-~~g~llv 300 (429)
T PRK10015 226 LYTNK-DSISLGLVCGLGDIAHAQKSVPQMLEDFK-QHPAIRPLISGGKLLEYSAH--MVPEGGLAMVPQLV-NDGVMIV 300 (429)
T ss_pred EEEcC-CcEEEEEEEehhhhccCCCCHHHHHHHHh-hChHHHHHhcCCEEEEEeeE--EcccCCcccCCccc-cCCeEEE
Confidence 34543 45565554322222 22357778877775 46766666543221111000 01111111 12343 7999999
Q ss_pred ccCccccC--chhhhhhhhhhhhHHHHHHHHHhc--ccC-HHHHHHHHHHHhHHH
Q psy12250 96 GDAAHAMV--PFYGQGMNAGFEDCCILQDLMIQY--DED-FGKVLPKFTEVRQHD 145 (235)
Q Consensus 96 GDAAH~~~--P~~GqG~n~aleDa~~La~~L~~~--~~~-~~~al~~Y~~~R~~~ 145 (235)
||||..++ |+.|+|++.||..+...|+.+.++ ..+ ....|..|++.-+..
T Consensus 301 GDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 301 GDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQS 355 (429)
T ss_pred ecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHC
Confidence 99999998 569999999999999999998876 223 356789999775544
No 58
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.33 E-value=1.2e-05 Score=72.55 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=75.8
Q ss_pred eecCCceEEEEEEeeCCccCC-CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceee-cCCcccCCcEEEEc
Q psy12250 19 LPNQDHSWTVTLFMPFEKFGL-LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIK-CNPYHKNDKVLIIG 96 (235)
Q Consensus 19 ~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~grvvLiG 96 (235)
++.. ...++.+.+..+.... ..++.++.+.|.. .|.+.+.+...+..+ ... ...|..... .++.. .++++++|
T Consensus 227 ~~~~-~~~svG~~~~~~~~~~~~~~~~~~l~~~~~-~p~v~~~~~~~~~~~-~~~-~~ip~~g~~~~~~~~-~~g~llvG 301 (428)
T PRK10157 227 YTNE-NTLSLGLVCGLHHLHDAKKSVPQMLEDFKQ-HPAVAPLIAGGKLVE-YSA-HVVPEAGINMLPELV-GDGVLIAG 301 (428)
T ss_pred EEcC-CeEEEEEEEehHHhcccCCCHHHHHHHHHh-CchHHHHhCCCeEHH-HHh-hHhhcCCcccCCcee-cCCeEEEe
Confidence 4543 3555555443333222 3567788877754 677666654322211 110 011211111 12333 79999999
Q ss_pred cCccccCc--hhhhhhhhhhhhHHHHHHHHHhc--ccC-HHHHHHHHHHHhHHHH
Q psy12250 97 DAAHAMVP--FYGQGMNAGFEDCCILQDLMIQY--DED-FGKVLPKFTEVRQHDA 146 (235)
Q Consensus 97 DAAH~~~P--~~GqG~n~aleDa~~La~~L~~~--~~~-~~~al~~Y~~~R~~~~ 146 (235)
|||..++| +.|+|++.|+..+...|+.+.+. ..+ ....|..|++.-+..+
T Consensus 302 DAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 302 DAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGP 356 (428)
T ss_pred cccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhH
Confidence 99999998 69999999999999999988776 223 4567999997654443
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.98 E-value=0.00012 Score=66.65 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=56.5
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYI 158 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~ 158 (235)
.+|+++|||||..++|..++|+.+++..+..|++.|.....+ +.+++.|++......+.+.+.-...|.
T Consensus 315 ~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~~~-~~~~~~Yn~~~~~~~~~~~~fi~~hY~ 383 (454)
T PF04820_consen 315 GKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDDFS-PAALDRYNRRMRREYERIRDFISLHYQ 383 (454)
T ss_dssp ETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999999999999999999876434 779999999988888888777665553
No 60
>PLN02697 lycopene epsilon cyclase
Probab=97.73 E-value=0.0013 Score=61.00 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=78.0
Q ss_pred eEEEEeecCCceEEE-EEEeeCCccCCCCCHHHHHHHHhhhCCCc----cccccchhhhhhhhcCCCCccceeecCCccc
Q psy12250 14 FMMIALPNQDHSWTV-TLFMPFEKFGLLGTARALLDFFDKYFPDA----IPLIGAERLVADFFSRKAAPLISIKCNPYHK 88 (235)
Q Consensus 14 ~~~~~~p~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (235)
..++++|.+++++.+ ...... ....+.+.+++.+..+.... .+.++ .+... .|+.. .. +-.
T Consensus 305 ~FlYvlP~~~~~~~VE~T~l~~---~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~-----~E~g~---iPm~g-~~-~~~- 370 (529)
T PLN02697 305 TFLYAMPMSSTRVFFEETCLAS---KDAMPFDLLKKRLMSRLETMGIRILKTYE-----EEWSY---IPVGG-SL-PNT- 370 (529)
T ss_pred eEEEEeecCCCeEEEEEeeecc---CCCCCHHHHHHHHHHHHHhCCCCcceEEE-----EEeee---ecCCC-CC-ccc-
Confidence 456778888777766 322111 11234566666666554332 12111 11111 22311 11 122
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---cc---------CHHHHHHHHHHHhHHHHHHHHHHH
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DE---------DFGKVLPKFTEVRQHDAEAICDLA 153 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~---------~~~~al~~Y~~~R~~~~~~~~~~s 153 (235)
..+++++||||..++|.+|-|+..++.+|..+|+.++++ ++ ....+++.|++........-...-
T Consensus 371 ~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~ 447 (529)
T PLN02697 371 EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFF 447 (529)
T ss_pred CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHH
Confidence 578999999999999999999999999999999999887 21 345788999987766655544444
No 61
>PLN02463 lycopene beta cyclase
Probab=96.58 E-value=0.011 Score=53.83 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=37.0
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
.+|++++||||..++|.+|.|+..++..+..+++.+.++
T Consensus 293 ~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~ 331 (447)
T PLN02463 293 PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEY 331 (447)
T ss_pred CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999998876
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.57 E-value=0.019 Score=51.03 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=64.7
Q ss_pred CCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCC----ccccccchhhhhhhhcCCCCccceeecCCcc
Q psy12250 12 GTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPD----AIPLIGAERLVADFFSRKAAPLISIKCNPYH 87 (235)
Q Consensus 12 ~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (235)
+...+.++|.++++..+-.++-... ...+.+++.+.+.++... ..++++. + .-..|+......+-.
T Consensus 183 ~~~F~Y~lP~~~~~alvE~T~fs~~--~~~~~~~~~~~l~~~l~~~g~~~~~i~~~-----E---~G~IPm~~~~~~~~~ 252 (374)
T PF05834_consen 183 GPSFLYVLPFSEDRALVEETSFSPR--PALPEEELKARLRRYLERLGIDDYEILEE-----E---RGVIPMTTGGFPPRF 252 (374)
T ss_pred CceEEEEEEcCCCeEEEEEEEEcCC--CCCCHHHHHHHHHHHHHHcCCCceeEEEe-----e---cceeecccCCCcccc
Confidence 4456777888887765532222211 113455666666555433 1222211 1 112344222222332
Q ss_pred cCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 88 KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 88 ~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
.++++.+|+||..+.|.+|-++..+++.+..+++.|...
T Consensus 253 -~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~ 291 (374)
T PF05834_consen 253 -GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKG 291 (374)
T ss_pred -CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhc
Confidence 577999999999999999999999999999999999873
No 63
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=73.62 E-value=5.7 Score=26.88 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=33.9
Q ss_pred EccCccccCchhhhhhhhhhhhHH-HHHHHHHhcccCHHHHHHHHHHH
Q psy12250 95 IGDAAHAMVPFYGQGMNAGFEDCC-ILQDLMIQYDEDFGKVLPKFTEV 141 (235)
Q Consensus 95 iGDAAH~~~P~~GqG~n~aleDa~-~La~~L~~~~~~~~~al~~Y~~~ 141 (235)
+|-|-+.|+|..=+.++.|++||. -|....+.. .++...|-.++..
T Consensus 19 vG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~a-t~lD~~Fl~~~~~ 65 (79)
T PF10819_consen 19 VGQATMSMDPDQLEHATQAVEDAREQLSQAKSHA-TGLDEPFLQQSEQ 65 (79)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHH
Confidence 678899999999999999999999 666665443 3455455554444
No 64
>PRK07233 hypothetical protein; Provisional
Probab=44.64 E-value=62 Score=28.62 Aligned_cols=35 Identities=6% Similarity=0.079 Sum_probs=26.9
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
.+++.++||. .....|.|+..|++.+...|+.+.+
T Consensus 395 ~~~l~~aG~~---~~~~~~~~~~~Ai~sG~~aA~~i~~ 429 (434)
T PRK07233 395 IEGLYLAGMS---QIYPEDRSINGSVRAGRRVAREILE 429 (434)
T ss_pred cCCEEEeCCc---ccCCccCchhHHHHHHHHHHHHHhh
Confidence 4889999992 2334567899999999998888754
No 65
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=40.59 E-value=1.2e+02 Score=25.61 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=48.4
Q ss_pred EEeecCCceEEEEEEeeCCccCCCC---CHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEE
Q psy12250 17 IALPNQDHSWTVTLFMPFEKFGLLG---TARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVL 93 (235)
Q Consensus 17 ~~~p~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvv 93 (235)
...|..+|.+.+............. ..+++.+.+.+.+|.+... +....|.... +.. .++..
T Consensus 233 y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~----~~~~~~~g~r----------~~t-~D~~p 297 (337)
T TIGR02352 233 YIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEA----RLLETWAGLR----------PGT-PDNLP 297 (337)
T ss_pred EEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcccC----cHHHheecCC----------CCC-CCCCC
Confidence 3467667766554332222222122 2455566666777765432 1122222111 111 34455
Q ss_pred EEcc-----CccccCchhhhhhhhhhhhHHHHHHHHH
Q psy12250 94 IIGD-----AAHAMVPFYGQGMNAGFEDCCILQDLMI 125 (235)
Q Consensus 94 LiGD-----AAH~~~P~~GqG~n~aleDa~~La~~L~ 125 (235)
+||. -.+...-+.|.|+..+--=+..|++.+.
T Consensus 298 iig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 298 YIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLIL 334 (337)
T ss_pred EeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence 5552 2334556778888888888888888775
No 66
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=28.81 E-value=1.3e+02 Score=17.87 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=19.5
Q ss_pred CeEEEEeecCCceEEEEEEeeCCccC
Q psy12250 13 TFMMIALPNQDHSWTVTLFMPFEKFG 38 (235)
Q Consensus 13 ~~~~~~~p~~~g~~~~~~~~~~~~~~ 38 (235)
...+.++|+.||.|..+.+.....+.
T Consensus 10 slv~gvfpn~dgtftamtytksktfk 35 (49)
T PF07151_consen 10 SLVCGVFPNQDGTFTAMTYTKSKTFK 35 (49)
T ss_pred ceEEeEeeCCCCcEEEEEEeecceee
Confidence 45667799999999988877655444
No 67
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=28.43 E-value=65 Score=29.54 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.4
Q ss_pred CcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 90 DKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 90 grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
.++.|+|+.+|+ |.|+..++..+...++.+..
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 459 PGLYCVGDSCFP-----GQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCeEEecCcCCC-----CCCHHHHHHHHHHHHHHHHh
Confidence 689999999875 89999999999988887753
No 68
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=28.22 E-value=98 Score=27.83 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=25.7
Q ss_pred CcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 90 DKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 90 grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
.++.+.||. +.|-|++-++.++..+|+.|.+
T Consensus 428 ~~l~l~G~~------~~g~~i~~~i~sg~~~a~~~~~ 458 (462)
T TIGR00562 428 PGVFLTGNS------FEGVGIPDCIDQGKAAASDVLT 458 (462)
T ss_pred CCEEEeccc------cCCCcHHHHHHHHHHHHHHHHH
Confidence 589999998 3467999999999988888754
No 69
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=27.81 E-value=67 Score=29.39 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=27.7
Q ss_pred CcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 90 DKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 90 grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
.++.|+|+.+|+ |.|+..++..+...++.+.+
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHP-----GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCC-----CCcHHHHHHHHHHHHHHHhh
Confidence 689999999876 88999999999998888753
No 70
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=27.02 E-value=56 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=22.5
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHH
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMI 125 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~ 125 (235)
..+|..+||+++... .-+..|+.++...+..+.
T Consensus 265 ~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 265 VPGVFAAGDVRDKGY----RQAVTAAGDGCIAALSAE 297 (300)
T ss_pred CCCEEEeecccCcch----hhhhhhhhhHHHHHHHHH
Confidence 478999999998522 235567777776666554
No 71
>KOG2470|consensus
Probab=26.91 E-value=2.3e+02 Score=25.36 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---c-----------cCHHHHHHHHHHHhHHHHHHH
Q psy12250 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---D-----------EDFGKVLPKFTEVRQHDAEAI 149 (235)
Q Consensus 84 ~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~-----------~~~~~al~~Y~~~R~~~~~~~ 149 (235)
..|+ +.+|+..|| |..+-..+--+-.+.+-++++.++=.+. + .-+...|++.+..|...++.+
T Consensus 342 t~Wr-G~~VlYFGD--HlySDLad~tlkhgWRTgAII~EL~~Eiki~N~e~y~~s~~w~q~lt~Ller~q~~rseasq~~ 418 (510)
T KOG2470|consen 342 TGWR-GPRVLYFGD--HLYSDLADLTLKHGWRTGAIIPELEREIKIQNTEQYRFSQTWLQILTGLLERMQAQRSEASQSV 418 (510)
T ss_pred hccC-CCeeEEecC--cchhhhhhhHhhcccccccchHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4686 789999999 6666666666677777777666554433 1 124466777777666665555
Q ss_pred HHHHHHhHHHhhhhcCChHHHHHHHHHHHHHHhCCCCcc
Q psy12250 150 CDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWI 188 (235)
Q Consensus 150 ~~~s~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~p~~~~ 188 (235)
.+.=... ...+|......++.-|.+.|.
T Consensus 419 L~ew~~e-----------Rq~lR~~tK~~FN~qFGs~Fr 446 (510)
T KOG2470|consen 419 LDEWMKE-----------RQELRDTTKQMFNAQFGSTFR 446 (510)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHhhcceee
Confidence 4432111 123444455555555655554
No 72
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=25.74 E-value=83 Score=27.19 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=24.6
Q ss_pred CcEEEEccCccccCchhhhhhhhhhhhHHHHHHHH
Q psy12250 90 DKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLM 124 (235)
Q Consensus 90 grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L 124 (235)
.++.+.||..|...+ .|++.|++.+..-|+.+
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~i 449 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEI 449 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHh
Confidence 599999998776544 68888998888777765
No 73
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=23.44 E-value=98 Score=28.35 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=27.5
Q ss_pred CcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 90 DKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 90 grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
.++.|+|+.+|+ |.|+..++..+...++.+.+
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~il~ 490 (502)
T TIGR02734 459 DNLYLVGAGTHP-----GAGVPGVLGSAKATAKLMLG 490 (502)
T ss_pred CCEEEeCCCCCC-----CCCHHHHHHHHHHHHHHHHh
Confidence 689999999876 88999998999988888754
No 74
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=22.36 E-value=2e+02 Score=17.67 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=18.6
Q ss_pred ccCHHHHHHHHHHHhHHHHHHHH
Q psy12250 128 DEDFGKVLPKFTEVRQHDAEAIC 150 (235)
Q Consensus 128 ~~~~~~al~~Y~~~R~~~~~~~~ 150 (235)
...+...-++|++.|.|-..++-
T Consensus 25 E~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 25 EQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccHHHHHh
Confidence 34677888999999999888763
No 75
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=21.97 E-value=2.6e+02 Score=19.55 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=34.9
Q ss_pred EccCccc--cCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12250 95 IGDAAHA--MVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMY 155 (235)
Q Consensus 95 iGDAAH~--~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~ 155 (235)
++++++. ..|. .|.|++..-|-.+-..= .+-.++-.+++.|+..-..++.++.+++..
T Consensus 18 L~s~~~~~~y~pl--K~gnMaysraNsin~~r-~Al~dLv~~Ve~fq~v~~~DA~RlkkmG~a 77 (90)
T PF11328_consen 18 LKSKASGVEYLPL--KNGNMAYSRANSINQLR-TALIDLVDVVENFQQVVKKDASRLKKMGKA 77 (90)
T ss_pred HHcccCCcccccc--cCCCeehhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 3344 44455554443222111 111356788899999999999999888764
No 76
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=20.96 E-value=2e+02 Score=26.30 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=25.5
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHH
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLM 124 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L 124 (235)
..++.|.||--..-.| .+++-|+..+...|+.+
T Consensus 441 ~~~l~lAGD~t~~~~p---as~egAv~sG~~aA~~i 473 (474)
T TIGR02732 441 ISNFFLAGSYTQQDYI---DSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCCeEEeccccccCch---HHHhHHHHHHHHHHHHh
Confidence 4799999999877666 48888888887777654
Done!