Query psy12250
Match_columns 235
No_of_seqs 228 out of 1918
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 22:36:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hb9_A Similarities with proba 99.8 5.1E-21 1.8E-25 167.8 10.8 77 83-160 305-384 (412)
2 2xdo_A TETX2 protein; tetracyc 99.8 2.9E-20 1E-24 163.8 14.6 152 10-163 227-388 (398)
3 2vou_A 2,6-dihydroxypyridine h 99.8 2.5E-20 8.7E-25 164.2 13.5 84 76-161 286-369 (397)
4 3rp8_A Flavoprotein monooxygen 99.8 3.7E-20 1.3E-24 163.5 14.3 153 4-161 216-371 (407)
5 2qa2_A CABE, polyketide oxygen 99.8 6.6E-20 2.3E-24 166.6 15.6 148 6-161 199-351 (499)
6 2qa1_A PGAE, polyketide oxygen 99.8 1.1E-19 3.8E-24 165.2 15.6 148 6-161 198-350 (500)
7 2r0c_A REBC; flavin adenine di 99.8 9E-20 3.1E-24 167.5 9.7 164 5-181 235-410 (549)
8 1pn0_A Phenol 2-monooxygenase; 99.8 2.9E-19 9.8E-24 167.6 12.7 142 14-162 275-425 (665)
9 2x3n_A Probable FAD-dependent 99.8 2.6E-19 8.9E-24 157.5 10.3 144 13-161 209-360 (399)
10 3fmw_A Oxygenase; mithramycin, 99.8 8.8E-19 3E-23 161.6 12.3 136 19-161 254-395 (570)
11 3c4a_A Probable tryptophan hyd 99.8 1.9E-18 6.6E-23 151.4 13.7 137 14-161 187-332 (381)
12 3ihg_A RDME; flavoenzyme, anth 99.8 1E-18 3.5E-23 159.7 12.3 138 15-160 231-373 (535)
13 3c96_A Flavin-containing monoo 99.8 1.5E-18 5.1E-23 153.5 12.6 111 41-159 257-371 (410)
14 1k0i_A P-hydroxybenzoate hydro 99.8 1.4E-18 4.8E-23 152.5 10.7 138 19-161 212-351 (394)
15 3alj_A 2-methyl-3-hydroxypyrid 99.7 1.5E-18 5.1E-23 151.9 7.1 135 11-155 207-345 (379)
16 2dkh_A 3-hydroxybenzoate hydro 99.7 9.2E-18 3.1E-22 156.7 11.8 141 13-160 254-414 (639)
17 3ihm_A Styrene monooxygenase A 99.7 1E-16 3.6E-21 142.8 13.0 110 45-156 258-374 (430)
18 3i3l_A Alkylhalidase CMLS; fla 99.7 9.6E-17 3.3E-21 148.5 7.7 142 13-158 233-379 (591)
19 3atr_A Conserved archaeal prot 99.6 3.1E-16 1E-20 140.5 9.9 147 3-158 200-353 (453)
20 3e1t_A Halogenase; flavoprotei 99.6 1.1E-15 3.6E-20 139.2 12.4 145 15-160 219-369 (512)
21 3oz2_A Digeranylgeranylglycero 99.6 1.7E-15 5.8E-20 131.7 11.8 144 2-154 194-344 (397)
22 3cgv_A Geranylgeranyl reductas 99.6 4.6E-15 1.6E-19 129.6 11.6 151 2-160 194-350 (397)
23 2gmh_A Electron transfer flavo 99.6 3.9E-15 1.3E-19 137.6 7.3 137 16-156 274-421 (584)
24 3nix_A Flavoprotein/dehydrogen 99.5 6.2E-14 2.1E-18 123.7 10.5 137 12-152 213-351 (421)
25 2pyx_A Tryptophan halogenase; 99.5 7.5E-14 2.6E-18 127.3 10.0 129 16-157 284-412 (526)
26 2aqj_A Tryptophan halogenase, 99.4 1E-12 3.5E-17 120.1 11.5 74 82-157 323-396 (538)
27 2weu_A Tryptophan 5-halogenase 99.4 2.3E-12 7.9E-17 116.8 11.6 74 83-158 332-405 (511)
28 2e4g_A Tryptophan halogenase; 99.4 5.3E-12 1.8E-16 115.7 12.6 106 41-158 323-428 (550)
29 2bry_A NEDD9 interacting prote 98.8 2.1E-09 7.1E-14 97.4 2.3 73 73-151 377-453 (497)
30 3kkj_A Amine oxidase, flavin-c 96.6 0.0011 3.7E-08 52.5 3.1 34 88-127 293-326 (336)
31 1yvv_A Amine oxidase, flavin-c 96.6 0.003 1E-07 53.0 5.7 33 89-127 294-326 (336)
32 1ryi_A Glycine oxidase; flavop 71.4 3.8 0.00013 34.4 4.2 96 17-127 259-362 (382)
33 3nrn_A Uncharacterized protein 66.2 5.5 0.00019 34.0 4.2 32 90-124 372-403 (421)
34 2gag_B Heterotetrameric sarcos 55.9 11 0.00038 31.6 4.3 110 17-143 272-389 (405)
35 2qcu_A Aerobic glycerol-3-phos 43.1 54 0.0019 28.7 6.8 37 89-125 332-370 (501)
36 2l2d_A OTU domain-containing p 37.1 46 0.0016 20.7 3.7 33 106-143 26-58 (73)
37 3ka7_A Oxidoreductase; structu 35.5 42 0.0014 28.2 4.7 32 90-124 392-423 (425)
38 4g6h_A Rotenone-insensitive NA 28.2 37 0.0013 30.0 3.1 36 89-127 364-399 (502)
39 3qj4_A Renalase; FAD/NAD(P)-bi 26.0 45 0.0015 27.3 3.1 32 89-126 309-340 (342)
40 4dgk_A Phytoene dehydrogenase; 25.2 40 0.0014 29.2 2.8 32 90-126 458-489 (501)
41 3i6d_A Protoporphyrinogen oxid 25.1 48 0.0016 28.2 3.3 32 89-126 435-466 (470)
42 2gf3_A MSOX, monomeric sarcosi 24.3 79 0.0027 26.0 4.4 39 89-127 321-364 (389)
43 3d1c_A Flavin-containing putat 24.2 81 0.0028 25.7 4.5 52 89-141 300-353 (369)
44 3nks_A Protoporphyrinogen oxid 23.1 54 0.0018 28.1 3.2 33 89-127 441-473 (477)
45 3itj_A Thioredoxin reductase 1 22.4 63 0.0022 25.9 3.3 34 89-126 299-332 (338)
46 3r9u_A Thioredoxin reductase; 21.1 85 0.0029 24.8 3.8 34 89-126 276-309 (315)
47 2jo8_A Serine/threonine-protei 20.7 1.4E+02 0.0049 17.6 4.1 23 128-150 27-49 (51)
48 3s5w_A L-ornithine 5-monooxyge 20.5 46 0.0016 28.5 2.2 39 89-127 409-447 (463)
No 1
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=99.84 E-value=5.1e-21 Score=167.84 Aligned_cols=77 Identities=22% Similarity=0.437 Sum_probs=70.0
Q ss_pred cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 83 CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 83 ~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
..+|. .|||+|||||||+|+|++|||+|+||+||.+|+++|... ..+++.+|+.|+++|++++..+++.|+.+...
T Consensus 305 ~~~~~-~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~~ 383 (412)
T 4hb9_A 305 LLPWK-SSTVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHEELVKAISDYEQQMRAYANEIVGISLRSAQN 383 (412)
T ss_dssp CCCCC-CCSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-ccCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34686 899999999999999999999999999999999999986 45789999999999999999999999987654
Q ss_pred h
Q psy12250 160 M 160 (235)
Q Consensus 160 ~ 160 (235)
+
T Consensus 384 ~ 384 (412)
T 4hb9_A 384 A 384 (412)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=99.84 E-value=2.9e-20 Score=163.84 Aligned_cols=152 Identities=22% Similarity=0.284 Sum_probs=104.6
Q ss_pred cCCCeEEEEeecCCceEEEEEEeeCC-cc-C----CCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeec
Q psy12250 10 PRGTFMMIALPNQDHSWTVTLFMPFE-KF-G----LLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKC 83 (235)
Q Consensus 10 ~g~~~~~~~~p~~~g~~~~~~~~~~~-~~-~----~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 83 (235)
.+++..++.+|.+++.+++++..+.. .+ . ...+.+++.+.+.+.++...+.+. +.+........+++...+.
T Consensus 227 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 304 (398)
T 2xdo_A 227 SHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYK--ELIHTTLSFVGLATRIFPL 304 (398)
T ss_dssp EETTEEEEEEEEETTEEEEEEEEECCTTC---CCSCTTCHHHHHHHHHHHTTTSCHHHH--HHHHHCSCCEEEEEEECCC
T ss_pred ecCCCeEEEEeCCCCcEEEEEEEecCcccccccccCcCCHHHHHHHHHHHHcCCChHHH--HHHhCcccceeeeeEeccC
Confidence 34555667788888887776655332 11 1 124667777777666555332221 1111100111233333333
Q ss_pred -CCcccCC--cEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccC-HHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 84 -NPYHKND--KVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDED-FGKVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 84 -~~~~~~g--rvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~-~~~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
.+|...+ ||+|||||||+|+|+.|||+|+||+||.+|+++|...+.+ ++.+|+.|+++|++++..+++.++.+...
T Consensus 305 ~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~ 384 (398)
T 2xdo_A 305 EKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIE 384 (398)
T ss_dssp CSCCCSCCSSCEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCccEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3675335 9999999999999999999999999999999999886556 88999999999999999999999888766
Q ss_pred hhhh
Q psy12250 160 MRDL 163 (235)
Q Consensus 160 ~~~~ 163 (235)
+...
T Consensus 385 ~~~~ 388 (398)
T 2xdo_A 385 MFKP 388 (398)
T ss_dssp HHST
T ss_pred HhCC
Confidence 5543
No 3
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.83 E-value=2.5e-20 Score=164.20 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=74.5
Q ss_pred CccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12250 76 APLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMY 155 (235)
Q Consensus 76 ~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~ 155 (235)
+++....+.+|. .|||+|||||||+|+|+.|||+|+||+||.+|+++|... .+++.+|+.|+++|++++..+++.|+.
T Consensus 286 ~~~~~~~~~~~~-~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~-~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 363 (397)
T 2vou_A 286 TVVADATVDRMV-HGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKN-HDLRGSLQSWETRQLQQGHAYLNKVKK 363 (397)
T ss_dssp EEEEEBCCSCSE-ETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeecCCcee-cCcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555666787 799999999999999999999999999999999999863 578999999999999999999999988
Q ss_pred hHHHhh
Q psy12250 156 NYIEMR 161 (235)
Q Consensus 156 ~~~~~~ 161 (235)
+...+.
T Consensus 364 ~~~~~~ 369 (397)
T 2vou_A 364 MASRLQ 369 (397)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 766554
No 4
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.83 E-value=3.7e-20 Score=163.46 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=107.6
Q ss_pred CcEEEccCCCeEEEEeecCCceEEEEEEeeCCccCC---CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccce
Q psy12250 4 NFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGL---LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLIS 80 (235)
Q Consensus 4 ~~~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~ 80 (235)
...+.|.+++..++.+|.+++.+.+.+..+...... ....+.+.+.+.++.|.+.+++...... .......+++.
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 293 (407)
T 3rp8_A 216 DQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQ-TTNRIEIHDIE- 293 (407)
T ss_dssp TEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGG-GCEEEEEEECC-
T ss_pred CceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHcCCcc-ceeEEeeEecC-
Confidence 345666566667778999999887777665432211 1234555555555555555444321111 10001111221
Q ss_pred eecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 81 IKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 81 ~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
...+|. .||++|||||||+++|++|||+|+||+||.+|+++|...+ +.+.+|+.|+++|++++..+++.++.....+
T Consensus 294 -~~~~~~-~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~-~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~ 370 (407)
T 3rp8_A 294 -PFSRLV-RGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTR-DIAAALREYEAQRCDRVRDLVLKARKRCDIT 370 (407)
T ss_dssp -CCSCCE-ETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcee-cCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 125786 7999999999999999999999999999999999999775 8899999999999999999999999877655
Q ss_pred h
Q psy12250 161 R 161 (235)
Q Consensus 161 ~ 161 (235)
.
T Consensus 371 ~ 371 (407)
T 3rp8_A 371 H 371 (407)
T ss_dssp T
T ss_pred h
Confidence 4
No 5
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=99.83 E-value=6.6e-20 Score=166.58 Aligned_cols=148 Identities=16% Similarity=0.057 Sum_probs=109.4
Q ss_pred EEEccCCCeEEEEeecCCceEEEEEEeeCCc---cCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceee
Q psy12250 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFEK---FGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIK 82 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~ 82 (235)
++++..+...++.+|.+++.+++++..+... .....+.+++.+.++++++...+... . .+ ...++.....
T Consensus 199 ~~~~~~~~g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~----~~--~~~~~~~~~~ 271 (499)
T 2qa2_A 199 PIGETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGE-P----VW--VSAFGDPARQ 271 (499)
T ss_dssp EEEEEETTEEEEEEECSSSCEEEEEEETTCCCCCCSSSCCHHHHHHHHHHHHSCCCTTCE-E----EE--EEEECCCEEE
T ss_pred eEEEECCCeEEEEEEcCCCEEEEEEEecCCCCccccCCCCHHHHHHHHHHHhCCCCCccc-e----eE--EEEEeCCcEE
Confidence 3444344445677899889888887654322 11235789999999887654222111 0 11 1224555566
Q ss_pred cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 83 CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 83 ~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
..+|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..+++.+..+...+
T Consensus 272 a~~~~-~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~~L~~Ye~eR~~~~~~~~~~s~~~~~l~ 350 (499)
T 2qa2_A 272 VSAYR-RGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLF 350 (499)
T ss_dssp CSCSE-ETTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-CCCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77887 799999999999999999999999999999999999886 345678999999999999999999998766555
Q ss_pred h
Q psy12250 161 R 161 (235)
Q Consensus 161 ~ 161 (235)
.
T Consensus 351 ~ 351 (499)
T 2qa2_A 351 L 351 (499)
T ss_dssp H
T ss_pred c
Confidence 4
No 6
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.82 E-value=1.1e-19 Score=165.17 Aligned_cols=148 Identities=15% Similarity=0.081 Sum_probs=108.1
Q ss_pred EEEccCCCeEEEEeecCCceEEEEEEeeCCc---cCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceee
Q psy12250 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFEK---FGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIK 82 (235)
Q Consensus 6 ~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~ 82 (235)
++++..+...++.+|.+++.+++++..+... .....+.+++.+.++++++...+... . .+ ...++.....
T Consensus 198 ~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~----~~--~~~~~~~~~~ 270 (500)
T 2qa1_A 198 MIGETLPGGMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAE-P----VW--VSAFGNATRQ 270 (500)
T ss_dssp EEEEEETTEEEEEEEETTTEEEEEEEETTCCC-----CCCHHHHHHHHHHHHSCCCTTSE-E----EE--EEEEECCEEE
T ss_pred eEEEECCCcEEEEEEcCCCEEEEEEEcCCCCCccccCCCCHHHHHHHHHHhcCCCCCccc-e----eE--EEEeccCcEE
Confidence 3444334445677899889888887654322 11235789999999887654222111 0 11 1124455556
Q ss_pred cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 83 CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 83 ~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
..+|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..+++.+..+...+
T Consensus 271 a~~~~-~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~~~~~~~~s~~~~~l~ 349 (500)
T 2qa1_A 271 VTEYR-RGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLLF 349 (500)
T ss_dssp CSCSE-ETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cCCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67887 799999999999999999999999999999999999886 445678999999999999999999998766555
Q ss_pred h
Q psy12250 161 R 161 (235)
Q Consensus 161 ~ 161 (235)
.
T Consensus 350 ~ 350 (500)
T 2qa1_A 350 L 350 (500)
T ss_dssp H
T ss_pred c
Confidence 4
No 7
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=99.80 E-value=9e-20 Score=167.48 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=105.3
Q ss_pred cEEEccCCC-eEEEEeecCC-ceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceee
Q psy12250 5 FLHIWPRGT-FMMIALPNQD-HSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIK 82 (235)
Q Consensus 5 ~~~~w~g~~-~~~~~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~ 82 (235)
.+++|.++. ..++.+|.++ +.|++.+ +.+. +. .+.+++.+.+++.++.-.+ + +.. ....|++....
T Consensus 235 ~~~~~~~p~~~~~~~~p~~~~~~~~~~~--~~~~-~~-~~~~~~~~~l~~~~~~~~~-~---~~~----~~~~~~~~~~~ 302 (549)
T 2r0c_A 235 LFFFLMLSSSLRFPLRALDGRGLYRLTV--GVDD-AS-KSTMDSFELVRRAVAFDTE-I---EVL----SDSEWHLTHRV 302 (549)
T ss_dssp SEEEEEEETTEEEEEEESSSSSEEEEEE--ECST-TC-CSCCCHHHHHHHHBCSCCC-C---EEE----EEEEEEECCEE
T ss_pred eEEEEECCCCcEEEEEEECCCcEEEEEe--cCCC-CC-CCHHHHHHHHHHHhCCCCc-e---eEE----EEecchhHhhh
Confidence 456553333 4456678755 4676655 3322 12 4556677777776654111 1 111 11234555666
Q ss_pred cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 83 CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 83 ~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
..+|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..+++.|..+...|
T Consensus 303 a~~~~-~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~ 381 (549)
T 2r0c_A 303 ADSFS-AGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEERRPVAITSLEEANVNLRRT 381 (549)
T ss_dssp CSCSE-ETTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTHHHHHHHHHHHHHHHHC--------
T ss_pred HHhhc-CCcEEEEccccccCCCccCCccccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77887 799999999999999999999999999999999999886 344578999999999999999999999888777
Q ss_pred hhhc--------CChHHHHHHHHHHHHHH
Q psy12250 161 RDLV--------TKSSFLWRKRFDSFLFW 181 (235)
Q Consensus 161 ~~~~--------~~~~~~~r~~l~~~l~~ 181 (235)
.... ......+|+.+.+.+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 410 (549)
T 2r0c_A 382 MDRELPPGLHDDGPRGERIRAAVAEKLER 410 (549)
T ss_dssp --CCCCTTTTCCSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCcchHHHHHHHHHHHHh
Confidence 5421 12234556666665543
No 8
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=99.80 E-value=2.9e-19 Score=167.56 Aligned_cols=142 Identities=19% Similarity=0.163 Sum_probs=103.8
Q ss_pred eEEEEeecCCceEEEEEEeeCCc------cCCCCCHHHHHHHHhhhCCC-ccccccchhhhhhhhcCCCCccceeecCCc
Q psy12250 14 FMMIALPNQDHSWTVTLFMPFEK------FGLLGTARALLDFFDKYFPD-AIPLIGAERLVADFFSRKAAPLISIKCNPY 86 (235)
Q Consensus 14 ~~~~~~p~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~p~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (235)
..++.+|.+++.+++++..+... .....+.+++.+.+++.+.. ..++ .. +. ....+++..+.+.+|
T Consensus 275 g~~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~~~~~~~~-~~---~~---~~~~~~~~~r~a~~~ 347 (665)
T 1pn0_A 275 GSIMIIPRENNLVRFYVQLQARAEKGGRVDRTKFTPEVVIANAKKIFHPYTFDV-QQ---LD---WFTAYHIGQRVTEKF 347 (665)
T ss_dssp CEEEEEECSTTCEEEEEEECC----------CCCCHHHHHHHHHHHHTTSCCEE-EE---EE---EEEEEEEEEEECSCS
T ss_pred ceEEEEEcCCCEEEEEEEeCCccccccccCcCCCCHHHHHHHHHHHhCcccCce-ee---EE---EEEeeeccceehhhc
Confidence 34566898888888877765532 11235788888888775433 2111 11 11 112245555667788
Q ss_pred ccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhh
Q psy12250 87 HKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRD 162 (235)
Q Consensus 87 ~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~~ 162 (235)
...|||+|+|||||+|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..++..++.....+..
T Consensus 348 ~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~g~a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~~~ 425 (665)
T 1pn0_A 348 SKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSG 425 (665)
T ss_dssp EETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 53599999999999999999999999999999999999876 44567899999999999999999999877665543
No 9
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.79 E-value=2.6e-19 Score=157.53 Aligned_cols=144 Identities=22% Similarity=0.221 Sum_probs=105.1
Q ss_pred CeEEEEeecCCceEEEEEEeeCCccCC---CCCHHHHHHHHhhhCCCcc-ccccchhhhhhhhcCCCCccce-eecCCcc
Q psy12250 13 TFMMIALPNQDHSWTVTLFMPFEKFGL---LGTARALLDFFDKYFPDAI-PLIGAERLVADFFSRKAAPLIS-IKCNPYH 87 (235)
Q Consensus 13 ~~~~~~~p~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~-~~i~~~~~~~~~~~~~~~~l~~-~~~~~~~ 87 (235)
+..++.+|.+++++.+++..+.+.... ..+.+++.+.++.+.+.+. ..++.. .. .....+++.. ....+|.
T Consensus 209 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ 284 (399)
T 2x3n_A 209 GGLAYFYPIGFDRARLVVSFPREEARELMADTRGESLRRRLQRFVGDESAEAIAAV---TG-TSRFKGIPIGYLNLDRYW 284 (399)
T ss_dssp SCEEEEEEETTTEEEEEEECCHHHHHHHHHSTTSHHHHHHHHTTCCGGGHHHHHTC---CC-STTCEECCCCCEECSCSE
T ss_pred CcEEEEEEcCCCEEEEEEEeCccccccccccCCHHHHHHHHhhcCCcchhhHHhcC---Cc-cceEEechhhcccccccc
Confidence 344666888877777666444332111 1456788888887666542 323211 10 0122356655 5566787
Q ss_pred cCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhh
Q psy12250 88 KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMR 161 (235)
Q Consensus 88 ~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~ 161 (235)
.|||+|+|||||.|+|++|||+|+||+||.+|+++|... +.+++.+|+.|+++|++++..+++.+..+...+.
T Consensus 285 -~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 360 (399)
T 2x3n_A 285 -ADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGHALATSLE 360 (399)
T ss_dssp -ETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhccHHHHHHHHHHHhhhhhc
Confidence 799999999999999999999999999999999999886 3478999999999999999999999987765543
No 10
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=99.78 E-value=8.8e-19 Score=161.57 Aligned_cols=136 Identities=21% Similarity=0.135 Sum_probs=101.7
Q ss_pred eecCCceE-EEEEEeeCCc---cCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEEE
Q psy12250 19 LPNQDHSW-TVTLFMPFEK---FGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLI 94 (235)
Q Consensus 19 ~p~~~g~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvvL 94 (235)
+|.+++.+ ++++..+... .....+.+++.+.++++++........ . . ....+++......+|. .|||+|
T Consensus 254 ~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~-~--~~~~~~~~~~~a~~~~-~grv~L 326 (570)
T 3fmw_A 254 FPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRGTPLTLTEP---V-S--WLSRFGDASRQAKRYR-SGRVLL 326 (570)
T ss_dssp CCC------CEEEEEESCC-----CCCCHHHHHHHTTSSSSCCCCCCSC---C-E--EEEEECCCCEECSCSE-ETTEEE
T ss_pred eecCCCeEEEEEEEeCCCCccccccCCCHHHHHHHHHHHhhccccccee---e-e--eeEEeecccccccccc-cCCEEE
Confidence 69988887 7877766432 122367899999999887754433221 1 0 1123566666777887 799999
Q ss_pred EccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhh
Q psy12250 95 IGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMR 161 (235)
Q Consensus 95 iGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~ 161 (235)
+|||||.++|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..++..+..+...+.
T Consensus 327 vGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~~ 395 (570)
T 3fmw_A 327 AGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAERVLLNTRAQLALMR 395 (570)
T ss_dssp CGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999886 4456899999999999999999999987765554
No 11
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=99.78 E-value=1.9e-18 Score=151.44 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=96.7
Q ss_pred eEEEEeecCCceEEEEEEeeCCcc--CCC--CCHHH----HHHHHhhhCCCccccccchhhhhhhhcCCCCccce-eecC
Q psy12250 14 FMMIALPNQDHSWTVTLFMPFEKF--GLL--GTARA----LLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLIS-IKCN 84 (235)
Q Consensus 14 ~~~~~~p~~~g~~~~~~~~~~~~~--~~~--~~~~~----~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~ 84 (235)
+.+..+|.+++.+++.+..+.+.+ ..+ .+.++ +.+.|.++.|. .+++... . ..|++.. ..+.
T Consensus 187 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~----~----~~~~~~~~~~~~ 257 (381)
T 3c4a_A 187 FIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGG-HGLVSQP----G----LGWRNFMTLSHD 257 (381)
T ss_dssp EEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTHHHHTT-CCCBCCT----T----TCSEEEEECCCS
T ss_pred EEEEEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhcccCCC-chhhcCC----C----cceeeeccccCC
Confidence 334468988877655544433211 111 23444 44555555444 2343311 1 1244443 3456
Q ss_pred CcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhh
Q psy12250 85 PYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMR 161 (235)
Q Consensus 85 ~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~ 161 (235)
+|. .|||+|||||||+|+|+.|||+|+||+||.+|+++|... .+++.+|+.|+++|++++..++..++.+...+.
T Consensus 258 ~~~-~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~-~~~~~aL~~Y~~~r~~~~~~~~~~s~~~~~~~~ 332 (381)
T 3c4a_A 258 RCH-DGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE-DGVPAALKRFEERALPLVQLFRGHADNSRVWFE 332 (381)
T ss_dssp CSE-ETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-cCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 787 799999999999999999999999999999999999886 578999999999999999999999987765544
No 12
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=99.78 E-value=1e-18 Score=159.69 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=103.5
Q ss_pred EEEEeecCC-ceEEEEEEeeCCccCC--CCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCc
Q psy12250 15 MMIALPNQD-HSWTVTLFMPFEKFGL--LGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDK 91 (235)
Q Consensus 15 ~~~~~p~~~-g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~gr 91 (235)
..+.+|..+ +.|.+.+..+.+.... ..+.+++.+.+++.++.....++ ......|++......+|. .||
T Consensus 231 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~-~gr 302 (535)
T 3ihg_A 231 KGTFGPTDRPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPE-------LVDIQGWEMAARIAERWR-EGR 302 (535)
T ss_dssp EEEEEECSSTTEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSSCCCE-------EEEEEEEEEEEEEESCSE-ETT
T ss_pred eEEEEEecCCCEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCCCcee-------EEEeeEeeeeEEEECccc-cCC
Confidence 344567765 6788777665543222 24678888888876542111111 011233667777778897 799
Q ss_pred EEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 92 vvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
|+|+|||||.|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..+++.|..++..+
T Consensus 303 v~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~~~ 373 (535)
T 3ihg_A 303 VFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQR 373 (535)
T ss_dssp EEECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccCCCccCCccccccccHHHHHHHHHHHhcCCCcHHHHHhhHHHHHHHHHHHHHHHHHhhHhh
Confidence 999999999999999999999999999999999986 445678999999999999999999999988654
No 13
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=99.77 E-value=1.5e-18 Score=153.46 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=84.8
Q ss_pred CCHHHHHHHHhhhCCC---ccccccchhhhhhhhcCCCCccceee-cCCcccCCcEEEEccCccccCchhhhhhhhhhhh
Q psy12250 41 GTARALLDFFDKYFPD---AIPLIGAERLVADFFSRKAAPLISIK-CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116 (235)
Q Consensus 41 ~~~~~~~~~~~~~~p~---~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleD 116 (235)
.+.+++.+.+.++.+. +.+++.... . ...+++.... ..+|. .|||+|||||||+|+|++|||+|+||+|
T Consensus 257 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~---~~~~~~~~~~~~~~~~-~grv~LvGDAAh~~~P~~GqG~n~ai~D 329 (410)
T 3c96_A 257 GRLEDVLPFFADWDLGWFDIRDLLTRNQ---L---ILQYPMVDRDPLPHWG-RGRITLLGDAAHLMYPMGANGASQAILD 329 (410)
T ss_dssp CCHHHHHHHHTTCCBTTBCHHHHHHTCS---E---EEEEEEEECCCCSCCC-BTTEEECTHHHHCCCSSTTCTHHHHHHH
T ss_pred CCHHHHHHHhcCCCCchhHHHHHHhcCc---c---cceeecccCCCccccc-cCCEEEEecccCCCCCccchhHHHHHHH
Confidence 4678888888876442 223332211 1 1123444333 35786 7999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250 117 CCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIE 159 (235)
Q Consensus 117 a~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~ 159 (235)
|.+|+++|... .+.+.+|+.|+++|++++..++..++..+..
T Consensus 330 a~~La~~L~~~-~~~~~~L~~Ye~~r~~~~~~~~~~s~~~~~~ 371 (410)
T 3c96_A 330 GIELAAALARN-ADVAAALREYEEARRPTANKIILANREREKE 371 (410)
T ss_dssp HHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 99999999886 5789999999999999999999998855443
No 14
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=99.76 E-value=1.4e-18 Score=152.47 Aligned_cols=138 Identities=15% Similarity=0.226 Sum_probs=94.1
Q ss_pred eecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccc-cccchhhhhhhhcCCCCccceeecCCcccCCcEEEEcc
Q psy12250 19 LPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIP-LIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGD 97 (235)
Q Consensus 19 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvvLiGD 97 (235)
.|..++.+++++..+........+.+++.+.+.+.++.... .+...... ....+++......+|. .|||+||||
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~grv~LvGD 286 (394)
T 1k0i_A 212 SQRSATRSQYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSL----EKSIAPLRSFVVEPMQ-HGRLFLAGD 286 (394)
T ss_dssp EEEETTEEEEEEEECTTCCGGGCCHHHHHHHHHHTSCHHHHHHCCCCCEE----EEEEEEEEEEEEECSE-ETTEEECGG
T ss_pred EecCCCcEEEEEEeCCCCCccccCHHHHHHHHHHhhCcccccccccCcce----eeEEEEhhhhhccccc-cCCEEEEec
Confidence 34445666666655443211123456666666666554211 11100100 1112345555566786 799999999
Q ss_pred CccccCchhhhhhhhhhhhHHHHHHHHHhc-ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhh
Q psy12250 98 AAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMR 161 (235)
Q Consensus 98 AAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~~ 161 (235)
|||+|+|+.|||+|+||+||.+|+++|... ..+.+.+|+.|+++|++++..+++.+..+...++
T Consensus 287 AAh~~~P~~GqG~~~ai~da~~La~~L~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~ 351 (394)
T 1k0i_A 287 AAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLH 351 (394)
T ss_dssp GTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHCCGGGGGGHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhcCCCcccchHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999876 2245689999999999999999999987665554
No 15
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=99.74 E-value=1.5e-18 Score=151.87 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=95.0
Q ss_pred CCCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCcc---ccccchhhhhhhhcCCCCcccee-ecCCc
Q psy12250 11 RGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAI---PLIGAERLVADFFSRKAAPLISI-KCNPY 86 (235)
Q Consensus 11 g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~i~~~~~~~~~~~~~~~~l~~~-~~~~~ 86 (235)
+++..++.+|.+++.+++.+..+.+. . +++++.+.|.++.+.+. +++...+. .....+++... ...+|
T Consensus 207 ~~~~~~~~~p~~~~~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~ 278 (379)
T 3alj_A 207 PRVQRILYSPCNENELYLGLMAPAAD-P---RGSSVPIDLEVWVEMFPFLEPCLIEAAK----LKTARYDKYETTKLDSW 278 (379)
T ss_dssp SSCCEEEEEECSSSEEEEEEEECTTC-T---TTTCSSCCHHHHHHHCGGGHHHHHHHHT----CTTCCEEEEEEEEESCS
T ss_pred CCCCEEEEEECCCCcEEEEEEecCCC-C---CHHHHHHHHhcCCchhccHHHHHhhCCc----cceEEecccccCCCCCc
Confidence 44455677899999877666554421 1 12334444444433322 33322110 11233455553 35678
Q ss_pred ccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12250 87 HKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMY 155 (235)
Q Consensus 87 ~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~ 155 (235)
. .|||+|||||||.++|++|||+|+||+||.+|+++|... .+++.+|+.|+++|++++..+++.+..
T Consensus 279 ~-~~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~-~~~~~~l~~Y~~~r~~~~~~~~~~s~~ 345 (379)
T 3alj_A 279 T-RGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEG-SSVEDALVAWETRIRPITDRCQALSGD 345 (379)
T ss_dssp E-ETTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-cCcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhccc-cCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7 799999999999999999999999999999999999875 478899999999999999999999843
No 16
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=99.74 E-value=9.2e-18 Score=156.71 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=96.8
Q ss_pred CeEEEEeecCCc-eEEEEEEeeC--Cc---cCCCCCHHHHHHHHhhhCCC-ccccccchhhhhhhhcCCCCccceeecCC
Q psy12250 13 TFMMIALPNQDH-SWTVTLFMPF--EK---FGLLGTARALLDFFDKYFPD-AIPLIGAERLVADFFSRKAAPLISIKCNP 85 (235)
Q Consensus 13 ~~~~~~~p~~~g-~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~p~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 85 (235)
...++.+|.+++ .+++++..+. +. .....+.+++.+.+++.+.. ..+ +.. +.. ...+++......+
T Consensus 254 ~g~~~~~P~~~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~---~~~---~~~~~~~~~~a~~ 326 (639)
T 2dkh_A 254 QGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKLE-VKN---VPW---WSVYEIGQRICAK 326 (639)
T ss_dssp TEEEEEEECTTSSCEEEEEECC-----------CCCHHHHHHHHHHHHTTSCEE-EEE---EEE---EEEECCCCEECSC
T ss_pred CceEEEEEcCCCcEEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhCcccCc-cee---eeE---EEecccccchhhh
Confidence 334566898887 7888776554 11 12235788888888765432 111 111 110 1112333334445
Q ss_pred cc-----------cCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHH
Q psy12250 86 YH-----------KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDL 152 (235)
Q Consensus 86 ~~-----------~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~ 152 (235)
|. ..|||+|+|||||.|+|++|||+|+||+||.+|+++|... +...+.+|+.|+++|++++..+++.
T Consensus 327 ~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g~a~~~lL~~Ye~eR~~~a~~~~~~ 406 (639)
T 2dkh_A 327 YDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQQLIDF 406 (639)
T ss_dssp SBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTTSBCGGGGHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 53 3799999999999999999999999999999999999876 4456789999999999999999999
Q ss_pred HHHhHHHh
Q psy12250 153 AMYNYIEM 160 (235)
Q Consensus 153 s~~~~~~~ 160 (235)
++.....+
T Consensus 407 s~~~~~~~ 414 (639)
T 2dkh_A 407 DREWAKMF 414 (639)
T ss_dssp HHHSCC--
T ss_pred HHHHHHHh
Confidence 88654333
No 17
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=99.70 E-value=1e-16 Score=142.83 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=83.5
Q ss_pred HHHHHHhhhCCCccccccchh--h---hhhhhcCCCCccceeecCCcccCCcEEE-EccCccccCchhhhhhhhhhhhHH
Q psy12250 45 ALLDFFDKYFPDAIPLIGAER--L---VADFFSRKAAPLISIKCNPYHKNDKVLI-IGDAAHAMVPFYGQGMNAGFEDCC 118 (235)
Q Consensus 45 ~~~~~~~~~~p~~~~~i~~~~--~---~~~~~~~~~~~l~~~~~~~~~~~grvvL-iGDAAH~~~P~~GqG~n~aleDa~ 118 (235)
++++.|++++|.+.+.+.... . ...+.....+++......+|. .||++| +|||||+++|++|||+|+||+||.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~GDAah~~~p~~g~G~~~a~~da~ 336 (430)
T 3ihm_A 258 LMLEKLGKHHPSVAERIDPAEFDLANSSLDILQGGVVPAFRDGHATLN-NGKTIIGLGDIQATVDPVLGQGANMASYAAW 336 (430)
T ss_dssp HHHHHHHHHCHHHHTTBCTTTCEESSSTTSEEEECCCCEEBCSEEECT-TSCEEEECGGGTEECCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHhCccHHHHHhhchhccccCccceeecceeecccccccccC-CCCEEEEecCccccCCCchhhhHHHHHHHHH
Confidence 667777888888777775432 1 111111133555555556787 789888 999999999999999999999999
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHhH-HHHHHHHHHHHHh
Q psy12250 119 ILQDLMIQYDEDFGKVLPKFTEVRQ-HDAEAICDLAMYN 156 (235)
Q Consensus 119 ~La~~L~~~~~~~~~al~~Y~~~R~-~~~~~~~~~s~~~ 156 (235)
+|+++|... .+++.+|..|+.+|+ +++..+.+.++..
T Consensus 337 ~l~~~l~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 374 (430)
T 3ihm_A 337 ILGEEILAH-SVYDLRFSEHLERRRQDRVLCATRWTNFT 374 (430)
T ss_dssp HHHHHHHHC-SCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 468899999999998 7777777666543
No 18
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.66 E-value=9.6e-17 Score=148.51 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=104.3
Q ss_pred CeEEEEeecCCceEEEEEEeeCCccCCC--CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCC
Q psy12250 13 TFMMIALPNQDHSWTVTLFMPFEKFGLL--GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKND 90 (235)
Q Consensus 13 ~~~~~~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~g 90 (235)
...++.+|..++.+++.+..+.+....+ .+.+++.+.+...+|.+.+.+......... ...+.......+|+ .+
T Consensus 233 ~G~~w~iPl~~~~~sv~~~~~~~~~~~l~~~~~~~~~~~l~~~~p~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~-~~ 308 (591)
T 3i3l_A 233 DGWVWMIPIKDDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKCAKAMDILGGAEQVDEV---RIVQDWSYDTEVFS-AD 308 (591)
T ss_dssp TEEEEEEECSSSEEEEEEEEEGGGHHHHHHHCHHHHHHHHHTTCHHHHHHHTTCEECSCC---EEEEEEEEEESCSE-ET
T ss_pred CcEEEEEECCCCeEEEEEEcCHHHHhhhccCCHHHHHHHHHHhCHHHHHHHhcCccccCc---eEecccccchhhcc-cC
Confidence 3446678998898888887766543222 356677777777777666555432211111 11222233445676 79
Q ss_pred cEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q psy12250 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAMYNYI 158 (235)
Q Consensus 91 rvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~ 158 (235)
|++|||||||.++|+.|||+|+|++||..|+++|... +...+.+++.|++.|+++...+.+.....|.
T Consensus 309 rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~~~~~~al~~Y~~~~~~~~~~i~~~~~~~Y~ 379 (591)
T 3i3l_A 309 RFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYREAYEQYHQFLASFYT 379 (591)
T ss_dssp TEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 3456789999999999999999999988774
No 19
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=99.65 E-value=3.1e-16 Score=140.53 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=100.5
Q ss_pred CCcEEEccC----CCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCcc
Q psy12250 3 PNFLHIWPR----GTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPL 78 (235)
Q Consensus 3 ~~~~~~w~g----~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l 78 (235)
++..++|.+ ++..++.+|.+++.+++.+..+.+. ......+.+.+++.+..|.+... +....... ..+.
T Consensus 200 ~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~--~~p~ 272 (453)
T 3atr_A 200 HDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGM-GYPSIHEYYKKYLDKYAPDVDKS----KLLVKGGA--LVPT 272 (453)
T ss_dssp TTEEEEECCTTTSTTSCEEEEEEETTEEEEEEEEESSS-CCCCHHHHHHHHHHHHCTTEEEE----EEEEEEEE--EEEC
T ss_pred CCeEEEEECCCCCCCcEEEEEECCCCeEEEEEEecCCC-CCCCHHHHHHHHHHhhhhhcCCC----eEEeccce--eccC
Confidence 344556642 2334666898888888887766432 11234567777776665554321 11111100 0111
Q ss_pred ceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCH-HHHHHHHHHHhHHHHHHHHHHHHH
Q psy12250 79 ISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDF-GKVLPKFTEVRQHDAEAICDLAMY 155 (235)
Q Consensus 79 ~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~-~~al~~Y~~~R~~~~~~~~~~s~~ 155 (235)
.....+|+ .+|++|+|||||.++|+.|||+|+||+||..|+++|... ..+. +.+|+.|+++|++++...+..+..
T Consensus 273 -~~~~~~~~-~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~ 350 (453)
T 3atr_A 273 -RRPLYTMA-WNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDI 350 (453)
T ss_dssp -SSCCSCSE-ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTTTHHHHHHHHHTHHHHHHHHH
T ss_pred -CCCCCcee-cCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345676 799999999999999999999999999999999999875 2343 679999999999999998887765
Q ss_pred hHH
Q psy12250 156 NYI 158 (235)
Q Consensus 156 ~~~ 158 (235)
...
T Consensus 351 ~~~ 353 (453)
T 3atr_A 351 FRR 353 (453)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 20
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=99.64 E-value=1.1e-15 Score=139.17 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=103.4
Q ss_pred EEEEeecCCceEEEEEEeeCCccCCC-CCHHHHHHHHhhhCCCccccccchhhhhh--hhcCCCCccceeecCCcccCCc
Q psy12250 15 MMIALPNQDHSWTVTLFMPFEKFGLL-GTARALLDFFDKYFPDAIPLIGAERLVAD--FFSRKAAPLISIKCNPYHKNDK 91 (235)
Q Consensus 15 ~~~~~p~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~i~~~~~~~~--~~~~~~~~l~~~~~~~~~~~gr 91 (235)
.++.+|..++++++.+..+.+..... .+.++..+.+.+++|.+.+.+........ +......+.......+|+ .+|
T Consensus 219 ~~~~~Pl~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~ 297 (512)
T 3e1t_A 219 WFWYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTSFW-KNG 297 (512)
T ss_dssp EEEEEECSSSEEEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHHHTTCEECCSSTTSSCEEEESCCEEESCSB-CSS
T ss_pred eEEEEEeCCCeEEEEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHHHhcCccccccccccceeeccccccccccc-cCC
Confidence 46678999988888887766544433 35666666666677776666543221111 000000011111344665 789
Q ss_pred EEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHHh
Q psy12250 92 VLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEM 160 (235)
Q Consensus 92 vvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~~ 160 (235)
++|||||||.++|+.|||+|+|++||..|+++|... ..+.+.+|+.|++.|+++...+.+.....|...
T Consensus 298 vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~~~~~~aL~~Ye~~~~~~~~~~~~~~~~~y~~~ 369 (512)
T 3e1t_A 298 MALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYRREYGNFYQFLVAFYDMN 369 (512)
T ss_dssp EEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999876 346789999999999999999999887666543
No 21
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.63 E-value=1.7e-15 Score=131.67 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=91.1
Q ss_pred CCCcEEEccC---CCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCcc
Q psy12250 2 DPNFLHIWPR---GTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPL 78 (235)
Q Consensus 2 ~~~~~~~w~g---~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l 78 (235)
+++..++|.+ +...++.+|.+++.+++.+..+.+......+.++..+.+.+.+|.+.+.- ...... ..+
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~----~~~~~~----~~~ 265 (397)
T 3oz2_A 194 DPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWIHNRFELKNYLDRFIENHPGLKKGQ----DIQLVT----GGV 265 (397)
T ss_dssp CTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTSCSHHHHHHHHHHHHHTCHHHHTSE----EEEEEE----EEE
T ss_pred CcccceeeeeccCCCceEEEeecccceeEEEEeeccchhhhhhhHHHHHHHHHHhCccccccc----eeeeee----ccc
Confidence 3555555543 44567778888888888776655433222223333333333344332211 011100 111
Q ss_pred ceee-cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHHHHHHH
Q psy12250 79 ISIK-CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAM 154 (235)
Q Consensus 79 ~~~~-~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~~~~s~ 154 (235)
.... ..+|+ .+|++|+|||||.++|+.|||+|+||+||..||+.|.++ ++..+.+|+.|++.++++.......+.
T Consensus 266 ~~~~~~~~~~-~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~~~~~~L~~Ye~~~~~~~~~~~~~~~ 344 (397)
T 3oz2_A 266 SVSKVKMPIT-MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFERKHLRNW 344 (397)
T ss_dssp ECCCCCSCCE-ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccccee-eeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22454 799999999999999999999999999999999999876 334578999999998887765554443
No 22
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.60 E-value=4.6e-15 Score=129.59 Aligned_cols=151 Identities=12% Similarity=0.114 Sum_probs=99.8
Q ss_pred CCCcEEEccC---CCeEEEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCcc
Q psy12250 2 DPNFLHIWPR---GTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPL 78 (235)
Q Consensus 2 ~~~~~~~w~g---~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l 78 (235)
+++..++|.+ +...++.+|.+++++++.+..+.+......+.++..+.+.+..|.+.. .+...... ...|+
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~--~~~p~ 267 (397)
T 3cgv_A 194 DPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWIHNRFELKNYLDRFIENHPGLKK----GQDIQLVT--GGVSV 267 (397)
T ss_dssp CTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTCSCHHHHHHHHHHHHHTCHHHHT----SEEEEEEE--EEEEC
T ss_pred CCCcEEEEeCCcCCCceEEEEECCCCeEEEEEEeccccccCCCCHHHHHHHHHHhCcCCCC----CeEEeeee--eeeec
Confidence 4556666643 445577789989888888877654332112233333333333332211 11111110 11222
Q ss_pred ceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy12250 79 ISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAMY 155 (235)
Q Consensus 79 ~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~~~~s~~ 155 (235)
. ....+|+ .+|++|+|||||.++|+.|||+|+|++||..|+++|.+. ++..+.+|+.|+++|+++....++.+..
T Consensus 268 ~-~~~~~~~-~~~v~liGDAa~~~~P~~G~G~~~a~~~a~~la~~l~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~ 345 (397)
T 3cgv_A 268 S-KVKMPIT-MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFERKHLRNWV 345 (397)
T ss_dssp C-CCCSCCE-ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcccee-eCCEEEEEccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2245676 799999999999999999999999999999999999875 3445689999999999999998888876
Q ss_pred hHHHh
Q psy12250 156 NYIEM 160 (235)
Q Consensus 156 ~~~~~ 160 (235)
....+
T Consensus 346 ~~~~~ 350 (397)
T 3cgv_A 346 AKEKL 350 (397)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 23
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=99.55 E-value=3.9e-15 Score=137.58 Aligned_cols=137 Identities=7% Similarity=0.007 Sum_probs=90.6
Q ss_pred EEEeecC--CceEEEEEEeeCCccCCCCC-HHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcE
Q psy12250 16 MIALPNQ--DHSWTVTLFMPFEKFGLLGT-ARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKV 92 (235)
Q Consensus 16 ~~~~p~~--~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grv 92 (235)
.+++|.. ++.+++.+..+.+......+ .+++.+++. .|.+.+++...+.. .+.....++.......+|. .+|+
T Consensus 274 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~l~~~~~--~p~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~rv 349 (584)
T 2gmh_A 274 SFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKH--HPSIKPTLEGGKRI-AYGARALNEGGFQSIPKLT-FPGG 349 (584)
T ss_dssp EEEEECCSSSCEEEEEEEEETTCCCTTCCHHHHHHHHTT--STTTHHHHTTCEEE-EEEEEEEECCGGGGCCCCE-ETTE
T ss_pred eEEEEecCCCCeEEEEEEEecCcccccCChHHHHHHHHh--ChHHHHHhCCCeEE-EecceEccCCCcccCCccc-cCCE
Confidence 4557877 78888888776554333333 345544332 46666666432211 1111111122222345676 7999
Q ss_pred EEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--cc--CHHHH---HHHHHHHhHHH-HHHHHHHHHHh
Q psy12250 93 LIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DE--DFGKV---LPKFTEVRQHD-AEAICDLAMYN 156 (235)
Q Consensus 93 vLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~--~~~~a---l~~Y~~~R~~~-~~~~~~~s~~~ 156 (235)
+|||||||.++|+.|||+|+||+||.+|+++|... .. +.+.+ |+.|+++|+++ +...+..++..
T Consensus 350 ~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~~~a~~~L~~Ye~~r~~~~v~~~l~~~r~~ 421 (584)
T 2gmh_A 350 LLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNI 421 (584)
T ss_dssp EECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHHHHHHHHTTTT
T ss_pred EEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhHHHHHHHHHHhHHHHHHHHHhCh
Confidence 99999999999999999999999999999999876 12 23554 99999999988 67777766543
No 24
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.50 E-value=6.2e-14 Score=123.65 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=96.0
Q ss_pred CCeEEEEeecCCceEEEEEEeeCCccCCC-CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCC
Q psy12250 12 GTFMMIALPNQDHSWTVTLFMPFEKFGLL-GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKND 90 (235)
Q Consensus 12 ~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~g 90 (235)
+...++.+|..+++.++.+..+.+..... .+.+++.+.+.+.+|.+.+.+........ ...++.......+|. .+
T Consensus 213 ~~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~-~~ 288 (421)
T 3nix_A 213 PKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERFKSEEFLFE---PRTIEGYAISASKLY-GD 288 (421)
T ss_dssp TTEEEEEEECTTSEEEEEEEECHHHHTTSCSCHHHHHHHHHHTCTTTHHHHTTCCBSSC---CEEEECCCBEESCSE-ET
T ss_pred CCEEEEEEEECCCCEEEEEEecHHHhhhcCCCHHHHHHHHHHhCcHHHHHHhcCccccC---ceeecccceeeeeec-cC
Confidence 34456778999998888887766544433 47777777777788887776654322111 111233333455676 79
Q ss_pred cEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-ccCHHHHHHHHHHHhHHHHHHHHHH
Q psy12250 91 KVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-DEDFGKVLPKFTEVRQHDAEAICDL 152 (235)
Q Consensus 91 rvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-~~~~~~al~~Y~~~R~~~~~~~~~~ 152 (235)
+++|||||||.++|+.|||+|+|++||..|+++|.+. .......++.|++.++.........
T Consensus 289 ~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 351 (421)
T 3nix_A 289 GFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGEEVNWEKDFVEHMMQGIDTFRSF 351 (421)
T ss_dssp TEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHTHHHHHHHHHHHHHH
T ss_pred CEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876 2121235677888877766555444
No 25
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=99.49 E-value=7.5e-14 Score=127.35 Aligned_cols=129 Identities=9% Similarity=0.016 Sum_probs=86.0
Q ss_pred EEEeecCCceEEEEEEeeCCccCCCCCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEEEE
Q psy12250 16 MIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLII 95 (235)
Q Consensus 16 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvvLi 95 (235)
++.+|..++..+..++.+ + ..+.++..+.+.+.+....+.+... + ...+++......+|+ .||++||
T Consensus 284 ~~~~pl~~~~~~~~v~~~-~----~~~~~~~~~~l~~~l~~~~~~l~~~----~---~~~~~~~~~~~~~~~-~grv~Li 350 (526)
T 2pyx_A 284 IWDIGLPTRKGVGYVYSS-S----HTNDIDAQKTLFNYLGVDGAAADKL----E---PRQLAINPGYRAKCW-QNNCIAI 350 (526)
T ss_dssp EEEEECSSEEEEEEEECT-T----TCCHHHHHHHHHHHHTCCHHHHHHC----C---CEEEECCCEEESCSE-ETTEEEC
T ss_pred EEEeeCCCceEEEEEecC-C----CCChHHHHHHHHHHHHhcCcccccC----C---ceEEecccCcccccc-CCCEEEE
Confidence 445676665443333221 1 1234555666665554332222100 1 112333333455666 7999999
Q ss_pred ccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy12250 96 GDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNY 157 (235)
Q Consensus 96 GDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~ 157 (235)
|||||.++|+.|||+|+|++||..|+++|.......+.+++.|+++|+++...+.+.....+
T Consensus 351 GDAAh~~~P~~GqGi~~ai~da~~La~~L~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y 412 (526)
T 2pyx_A 351 GMAAGFIEPLEASALALIEWTASTLAQQLPPNRMVMDTISARVNERYQQHWQQIIDFLKLHY 412 (526)
T ss_dssp GGGTEECCCTTCHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhhhcccCccccccHHHHHHHHHHHHHHhhhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999744345678999999999999999888665555
No 26
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=99.41 E-value=1e-12 Score=120.10 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=63.1
Q ss_pred ecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy12250 82 KCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNY 157 (235)
Q Consensus 82 ~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~ 157 (235)
...+|+ .||++|||||||.++|+.|||+|+|++||.+|+++|... ...+.+|+.|+++|+++...+.+.....+
T Consensus 323 ~~~~~~-~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~~~-~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y 396 (538)
T 2aqj_A 323 RNKRAW-VNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFPDT-SFDPRLSDAFNAEIVHMFDDCRDFVQAHY 396 (538)
T ss_dssp EESCSE-ETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCCBT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-cCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345565 799999999999999999999999999999999999742 45678999999999999988877655544
No 27
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=99.38 E-value=2.3e-12 Score=116.84 Aligned_cols=74 Identities=11% Similarity=0.060 Sum_probs=63.7
Q ss_pred cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q psy12250 83 CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYI 158 (235)
Q Consensus 83 ~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~ 158 (235)
..+|+ .||++|||||||.++|+.|||+|+|++||..|+++|... ...+.+++.|+++|+++...+.+.....+.
T Consensus 332 ~~~~~-~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~~-~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~ 405 (511)
T 2weu_A 332 NERTW-INNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPGE-RWDPVLISAYNERMAHMVDGVKEFLVLHYK 405 (511)
T ss_dssp ESCSE-ETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-CCCEEEEechhhccCccccccHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555 699999999999999999999999999999999999753 456789999999999999998887665543
No 28
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=99.35 E-value=5.3e-12 Score=115.74 Aligned_cols=106 Identities=8% Similarity=0.008 Sum_probs=77.4
Q ss_pred CCHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHH
Q psy12250 41 GTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120 (235)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~L 120 (235)
.+.++..+.+.+.+.....+ .... . .++......+++ .+|++|||||||.++|+.|||+|+|++||..|
T Consensus 323 ~~~~~~~~~l~~~~~~~p~l-~~~~---~------i~~~~~~~~~~~-~~rvvliGDAAh~~~P~~GqGi~~a~~da~~L 391 (550)
T 2e4g_A 323 ATEDEAVREFCEMWHLDPET-QPLN---R------IRFRVGRNRRAW-VGNCVSIGTSSCFVEPLESTGIYFVYAALYQL 391 (550)
T ss_dssp SCHHHHHHHHHHHTTCCTTT-SCCE---E------EECCCEEESCSE-ETTEEECSTTTEECCGGGSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhhCcCccc-CCCc---e------EEecCCCccccc-cCCEEEEehhhcccCccchhhHHHHHHHHHHH
Confidence 35667777777765442111 1110 0 122222234454 69999999999999999999999999999999
Q ss_pred HHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q psy12250 121 QDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYI 158 (235)
Q Consensus 121 a~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~ 158 (235)
+++|... ...+.+++.|+++|+++...+.+.....+.
T Consensus 392 a~~L~~~-~~~~~~l~~Y~~~~~~~~~~i~~~~~~~y~ 428 (550)
T 2e4g_A 392 VKHFPDK-SLNPVLTARFNREIETMFDDTRDFIQAHFY 428 (550)
T ss_dssp HHTCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999753 456789999999999999999888776654
No 29
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.75 E-value=2.1e-09 Score=97.39 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=56.2
Q ss_pred CCCCccceeecCCcccCCc-EEEEccCcc-ccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHH
Q psy12250 73 RKAAPLISIKCNPYHKNDK-VLIIGDAAH-AMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEA 148 (235)
Q Consensus 73 ~~~~~l~~~~~~~~~~~gr-vvLiGDAAH-~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~ 148 (235)
...|++..+...+|. .|| ++|+||||| .+.| .|||+|+||+||..|+++|... +.....+| ++|++.+..
T Consensus 377 ~~~~~~~~r~a~~~~-~gRr~~l~Gda~~~~~~p-~g~G~n~g~~~a~~l~~~l~~~~~g~~~~~~l----~~r~~~~~~ 450 (497)
T 2bry_A 377 MMRAESSARVQEKHG-ARLLLGLVGDCLVEPFWP-LGTGVARGFLAAFDAAWMVKRWAEGAGPLEVL----AERESLYQL 450 (497)
T ss_dssp EEEESCSEEEEEETT-EEEEEEECGGGTBCCCGG-GCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHH----HHHHHHHTT
T ss_pred EEecchhhHHHHhcC-CcccceEeccccccCcCc-cccchhhHHHHHHHHHHHHHHHhCCCCccchh----hhHHHHhhh
Confidence 344666666677886 788 999999999 5556 9999999999999999999987 44455556 677776655
Q ss_pred HHH
Q psy12250 149 ICD 151 (235)
Q Consensus 149 ~~~ 151 (235)
+.+
T Consensus 451 l~~ 453 (497)
T 2bry_A 451 LSQ 453 (497)
T ss_dssp GGG
T ss_pred hhh
Confidence 443
No 30
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=96.61 E-value=0.0011 Score=52.54 Aligned_cols=34 Identities=6% Similarity=0.055 Sum_probs=30.1
Q ss_pred cCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 88 KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 88 ~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
..+||+|+|||++ |.|++.|+.|+..+|+.|.+.
T Consensus 293 ~~~~v~l~GDa~~------g~gv~~A~~sG~~aA~~I~~~ 326 (336)
T 3kkj_A 293 ADLGIYVCGDWCL------SGRVEGAWLSGQEAARRLLEH 326 (336)
T ss_dssp TTTTEEECCGGGT------TSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecccC------CcCHHHHHHHHHHHHHHHHHH
Confidence 3789999999954 789999999999999999875
No 31
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=96.56 E-value=0.003 Score=53.04 Aligned_cols=33 Identities=6% Similarity=0.068 Sum_probs=29.7
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
.+|++|+|||+|. .|++.|+.|+..||+.|.+.
T Consensus 294 ~~rl~laGDa~~g------~gv~~a~~sg~~lA~~l~~~ 326 (336)
T 1yvv_A 294 DLGIYVCGDWCLS------GRVEGAWLSGQEAARRLLEH 326 (336)
T ss_dssp TTTEEECCGGGTT------SSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCC------CCHHHHHHHHHHHHHHHHHH
Confidence 5999999999974 49999999999999999876
No 32
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=71.40 E-value=3.8 Score=34.35 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=54.0
Q ss_pred EEeecCCceEEEEEEeeCCccCCCCC---HHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcEE
Q psy12250 17 IALPNQDHSWTVTLFMPFEKFGLLGT---ARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVL 93 (235)
Q Consensus 17 ~~~p~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grvv 93 (235)
.+.|..+|.+.+........+....+ .+.+.+.+.+.+|.+... +....|.. + .++. .++..
T Consensus 259 ~~~p~~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~----~~~~~w~g-----~-----~~~t-~d~~p 323 (382)
T 1ryi_A 259 YIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNM----KVDRFWAG-----L-----RPGT-KDGKP 323 (382)
T ss_dssp EEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGS----EEEEEEEE-----E-----EEEC-SSSCC
T ss_pred EEEEcCCCeEEEeecccccCCCCCCCHHHHHHHHHHHHHhCCCcCCC----ceeeEEEE-----e-----cccC-CCCCc
Confidence 34676667655543221112222222 356666777777764321 11111110 0 1122 45667
Q ss_pred EEccCc-----cccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 94 IIGDAA-----HAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 94 LiGDAA-----H~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
+||++. +...++.|.|+..|..-+..|++.+...
T Consensus 324 ~ig~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~~ 362 (382)
T 1ryi_A 324 YIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNK 362 (382)
T ss_dssp EEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTTC
T ss_pred EeccCCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhCC
Confidence 778763 3456788999999999999999998764
No 33
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=66.21 E-value=5.5 Score=34.04 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=26.6
Q ss_pred CcEEEEccCccccCchhhhhhhhhhhhHHHHHHHH
Q psy12250 90 DKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLM 124 (235)
Q Consensus 90 grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L 124 (235)
.++.|+||..+ |.+|-.+.-|+.++...|+.|
T Consensus 372 ~gl~laGd~~~---~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 372 NEVLVVGDGYR---PPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp SSEEECSTTCC---CTTCCHHHHHHHHHHHHHHHT
T ss_pred CcEEEECCccc---CCCceeeehHHHHHHHHHHHh
Confidence 88999999987 344556688999999999888
No 34
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=55.91 E-value=11 Score=31.64 Aligned_cols=110 Identities=10% Similarity=0.059 Sum_probs=53.6
Q ss_pred EEeecCCceEEEEEEeeC-CccCCCC---CHHHHHHHHhhhCCCccccccchhhhhhhhcCCCCccceeecCCcccCCcE
Q psy12250 17 IALPNQDHSWTVTLFMPF-EKFGLLG---TARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKV 92 (235)
Q Consensus 17 ~~~p~~~g~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~grv 92 (235)
...|..+|.+.+...... ....... ..+.+.+.+.+.+|.+... +....|.. +. +.. .++.
T Consensus 272 y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~----~~~~~w~g-----~~-----~~t-~d~~ 336 (405)
T 2gag_B 272 YVSQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMAAAVELFPIFARA----HVLRTWGG-----IV-----DTT-MDAS 336 (405)
T ss_dssp EEEECTTSEEEEEEEECSSCCCSSCCCTHHHHHHHHHHHHHCGGGGGC----EECEEEEE-----EE-----EEE-TTSC
T ss_pred EEEEcCCCcEEEEeccCCCCccccCCCHHHHHHHHHHHHHhCCccccC----CcceEEee-----cc-----ccC-CCCC
Confidence 346766777766554321 1121112 2456667777777764321 11111110 11 122 5778
Q ss_pred EEEccCc--c--ccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhH
Q psy12250 93 LIIGDAA--H--AMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQ 143 (235)
Q Consensus 93 vLiGDAA--H--~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~ 143 (235)
.+||++. + ....+.|.|+..|..-+..|++.+.... ....++.|.-+|.
T Consensus 337 p~ig~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~g~~--~~~~~~~~~~~R~ 389 (405)
T 2gag_B 337 PIISKTPIQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDE--PHELNKPFSLERF 389 (405)
T ss_dssp CEEEECSSBTEEEEECCGGGCSTTHHHHHHHHHHHHHHTS--CCTTTTTSCSTHH
T ss_pred CEecccCCCCEEEEecCCCchhhHHHHHHHHHHHHHhCCC--CCccccccCcchh
Confidence 8889864 1 1223455666666666666666665431 1123455554443
No 35
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=43.13 E-value=54 Score=28.70 Aligned_cols=37 Identities=8% Similarity=0.040 Sum_probs=23.7
Q ss_pred CCcEEE--EccCccccCchhhhhhhhhhhhHHHHHHHHH
Q psy12250 89 NDKVLI--IGDAAHAMVPFYGQGMNAGFEDCCILQDLMI 125 (235)
Q Consensus 89 ~grvvL--iGDAAH~~~P~~GqG~n~aleDa~~La~~L~ 125 (235)
.+.++. .+|..|.+....|.|+..+-.=|..+++.+.
T Consensus 332 ~~~~i~~~~~~~~~gl~~i~Gg~~t~~~~~Ae~~~~~~~ 370 (501)
T 2qcu_A 332 RDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLT 370 (501)
T ss_dssp CCCEEEEEEETTEEEEEEEECCCGGGHHHHHHHHHHHHG
T ss_pred CceEEEecccCCCCCeEEEeCccccchHHHHHHHHHHHH
Confidence 455666 6777788888888777666544444444443
No 36
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=37.11 E-value=46 Score=20.74 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=22.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhH
Q psy12250 106 YGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQ 143 (235)
Q Consensus 106 ~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~ 143 (235)
.+-|++.+| | .++|...+-|+.++|..|+..|+
T Consensus 26 rstgaepgL--a---RDlleGKnWDl~AAL~D~eqLrq 58 (73)
T 2l2d_A 26 RSTGAEPGL--A---RDLLEGKNWDLTAALSDYEQLRQ 58 (73)
T ss_dssp HHHCCCHHH--H---HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCCCcch--h---HHhhccCCccHhHHhhhHHHHHH
Confidence 345565555 2 23455546788999999998875
No 37
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=35.46 E-value=42 Score=28.22 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.2
Q ss_pred CcEEEEccCccccCchhhhhhhhhhhhHHHHHHHH
Q psy12250 90 DKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLM 124 (235)
Q Consensus 90 grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L 124 (235)
+++.|+||..+ |-+|.|++-++.+|...++.|
T Consensus 392 ~gL~laG~~~~---~~gg~gv~~~~~s~~~~~~~i 423 (425)
T 3ka7_A 392 SGLYVVGDGAK---GKGGIEVEGVALGVMSVMEKV 423 (425)
T ss_dssp BTEEECSTTSC---CTTCCHHHHHHHHHHHHHHC-
T ss_pred CCeEEeCCccC---CCCCCccHHHHHHHHHHHHHh
Confidence 58999999966 578999999999998777654
No 38
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=28.24 E-value=37 Score=30.01 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
..+|.-+||+|..-.|-.|| .|.+.+..+|+.|...
T Consensus 364 ~~~IfAiGD~a~~~~p~~a~---~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 364 SNNIFAIGDNAFAGLPPTAQ---VAHQEAEYLAKNFDKM 399 (502)
T ss_dssp CSSEEECGGGEESSSCCCHH---HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcccCCCCCCchH---HHHHHHHHHHHHHHHH
Confidence 46899999999887777766 4778888888888654
No 39
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=26.01 E-value=45 Score=27.26 Aligned_cols=32 Identities=6% Similarity=0.058 Sum_probs=25.4
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
..++.|.||+.+ |-|++-|+..+..+++.|..
T Consensus 309 ~~~l~laGd~~~------g~~v~~ai~sg~~aa~~i~~ 340 (342)
T 3qj4_A 309 KPFLACGGDGFT------QSNFDGCITSALCVLEALKN 340 (342)
T ss_dssp TTEEEECSGGGS------CSSHHHHHHHHHHHHHHHTT
T ss_pred CccEEEEccccC------CCCccHHHHHHHHHHHHHHh
Confidence 478999999975 45888888888888877643
No 40
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=25.15 E-value=40 Score=29.17 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=21.4
Q ss_pred CcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 90 DKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 90 grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
.++.|+||.+|+ |.|+..++..+...|+.+-+
T Consensus 458 ~gLyl~G~~t~p-----G~Gv~ga~~SG~~aA~~il~ 489 (501)
T 4dgk_A 458 TNLYLVGAGTHP-----GAGIPGVIGSAKATAGLMLE 489 (501)
T ss_dssp TTEEECCCH-----------HHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCC-----cccHHHHHHHHHHHHHHHHH
Confidence 679999998875 77898888888887776643
No 41
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=25.06 E-value=48 Score=28.18 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=25.5
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
.+++.+.||+. .|.|++.|++.+..+|+.+..
T Consensus 435 ~~~l~~aG~~~------~g~gv~~a~~sG~~aA~~i~~ 466 (470)
T 3i6d_A 435 YPGVYMTGASF------EGVGIPDCIDQGKAAVSDALT 466 (470)
T ss_dssp STTEEECSTTT------SCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecC------CCCCHHHHHHHHHHHHHHHHH
Confidence 47899999963 367888899999888887653
No 42
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=24.33 E-value=79 Score=26.02 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=22.8
Q ss_pred CCcEEEEccCc-----cccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 89 NDKVLIIGDAA-----HAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 89 ~grvvLiGDAA-----H~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
.++..+||... +...-+.|.|+.+|-.-|..|++.+...
T Consensus 321 ~D~~p~ig~~~~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~ 364 (389)
T 2gf3_A 321 LDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTG 364 (389)
T ss_dssp TTSCCEEEEETTEEEEEEEECCTTCCGGGHHHHHHHHHHHHHHS
T ss_pred CCCCeEEccCCCCCCEEEEECCccccccccHHHHHHHHHHHcCC
Confidence 35566677632 1123345677777776667777666543
No 43
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=24.24 E-value=81 Score=25.69 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=30.5
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc-c-cCHHHHHHHHHHH
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY-D-EDFGKVLPKFTEV 141 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~-~-~~~~~al~~Y~~~ 141 (235)
..+|..+||++....+..+ ++..+-..+..+++.|... . ......++.|+..
T Consensus 300 ~~~v~a~GD~~~~~~~~~~-~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~~~~~~ 353 (369)
T 3d1c_A 300 YPNIFMIGATVENDNAKLC-YIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKN 353 (369)
T ss_dssp STTEEECSTTCCCSSCCCC-SHHHHGGGHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred CCCeEEeccccccCCeeEE-EEehhhHHHHHHHHHHhcccCCCCcchHHHHHHhc
Confidence 4689999999876544332 2233445567777777554 1 1223466677643
No 44
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=23.08 E-value=54 Score=28.08 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=27.7
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
.+++.|+||. +.|.|++.|+..+..+|+.|...
T Consensus 441 ~~~l~l~G~~------~~G~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 441 RLPLTLAGAS------YEGVAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp TCSEEECSTT------TSCCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEccC------CCCCcHHHHHHHHHHHHHHHHhc
Confidence 3689999998 35889999999999999988653
No 45
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=22.40 E-value=63 Score=25.88 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=22.4
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
..+|..+||++....+. +..|+.++...|..+.+
T Consensus 299 ~~~vya~GD~~~~~~~~----~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 299 VPGFFAAGDVQDSKYRQ----AITSAGSGCMAALDAEK 332 (338)
T ss_dssp STTEEECGGGGCSSCCC----HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeccCCCCccc----eeeehhhhHHHHHHHHH
Confidence 47899999999843332 34566666666665543
No 46
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=21.07 E-value=85 Score=24.76 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=21.9
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHh
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQ 126 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~ 126 (235)
..+|..+||+++..++ .+..|+.++...+..+.+
T Consensus 276 ~~~v~a~GD~~~~~~~----~~~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 276 VAGLFAAGDLRKDAPK----QVICAAGDGAVAALSAMA 309 (315)
T ss_dssp STTEEECGGGBTTCCC----CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCCchh----hhhhHHhhHHHHHHHHHH
Confidence 4789999999864322 334566666666665543
No 47
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.73 E-value=1.4e+02 Score=17.62 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=18.2
Q ss_pred ccCHHHHHHHHHHHhHHHHHHHH
Q psy12250 128 DEDFGKVLPKFTEVRQHDAEAIC 150 (235)
Q Consensus 128 ~~~~~~al~~Y~~~R~~~~~~~~ 150 (235)
...+.+.-.+|++.|.|...++.
T Consensus 27 e~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 27 EQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHhhHHHHHh
Confidence 34577888899999999888763
No 48
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=20.47 E-value=46 Score=28.52 Aligned_cols=39 Identities=8% Similarity=-0.220 Sum_probs=29.5
Q ss_pred CCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc
Q psy12250 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY 127 (235)
Q Consensus 89 ~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~ 127 (235)
..+|+.+||++|.......+-...|...+.+|+..+...
T Consensus 409 ~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~~~ 447 (463)
T 3s5w_A 409 KVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQHL 447 (463)
T ss_dssp CSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHhhc
Confidence 457999999998766555566667788888888777665
Done!