RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12250
(235 letters)
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 130 bits (328), Expect = 5e-36
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 16/186 (8%)
Query: 1 MDPNFLHIWPRGTFMMIALPNQDHS--WTVTLFMPFE----KFGLLGTARALLDFFDKYF 54
+ + ++ A PN + + + ++ P E +++DF K F
Sbjct: 218 LCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEF 277
Query: 55 PDAIPLIGAERLVA---DFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMN 111
D + L+ F K + + +IGDAAH M PF GQG+N
Sbjct: 278 SDWDERY--KELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVN 335
Query: 112 AGFEDCCILQD-LMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFL 170
+G D IL D L + + + + + + + N IEM F
Sbjct: 336 SGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFK----PDFT 391
Query: 171 WRKRFD 176
+++ +
Sbjct: 392 FQQLLN 397
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 62.1 bits (150), Expect = 1e-11
Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 16/152 (10%)
Query: 9 WPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLG----TARALLDFFDKYFPDA---IPLI 61
+ F+ A D T + E + + A ++ K F L+
Sbjct: 182 HGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHGLV 241
Query: 62 GAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQ 121
L F + + H K++++GDA + G G +L
Sbjct: 242 SQPGLGWRNFMT-------LSHDRCHD-GKLVLLGDALQSGHFSIGHGTTMAVVVAQLLV 293
Query: 122 DLMIQYDEDFGKVLPKFTEVRQHDAEAICDLA 153
+ D L +F E + A
Sbjct: 294 KALCTED-GVPAALKRFEERALPLVQLFRGHA 324
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 55.3 bits (132), Expect = 3e-09
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 5/110 (4%)
Query: 44 RALLDFFDKYFPDAIPLIGAERLV-----ADFFSRKAAPLISIKCNPYHKNDKVLIIGDA 98
+L+ K+ P I D P + ++ +GD
Sbjct: 257 DLMLEKLGKHHPSVAERIDPAEFDLANSSLDILQGGVVPAFRDGHATLNNGKTIIGLGDI 316
Query: 99 AHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEA 148
+ P GQG N IL + ++ + + RQ
Sbjct: 317 QATVDPVLGQGANMASYAAWILGEEILAHSVYDLRFSEHLERRRQDRVLC 366
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 53.4 bits (129), Expect = 1e-08
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 13/151 (8%)
Query: 2 DPNFLHIWPRGTFMMIALPNQDHSWTVTLFMP---FEKFGLLGTARALLDFFDKYFPDAI 58
+ + WPR ++ P ++ + L P + ++ F P I
Sbjct: 199 TIDMWNFWPRVQ-RILYSPCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPFLEPCLI 257
Query: 59 PLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCC 118
+ D + + + KV ++GDAAHAM P QG +
Sbjct: 258 EAAKLKTARYDKYETTKLD-------SWTR-GKVALVGDAAHAMCPALAQGAGCAMVNAF 309
Query: 119 ILQDLMIQYDEDFGKVLPKFTEVRQHDAEAI 149
L + + L + + +
Sbjct: 310 SLSQDLEEGS-SVEDALVAWETRIRPITDRC 339
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 51.9 bits (125), Expect = 4e-08
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 16/155 (10%)
Query: 2 DPNFLHIW--PRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARA-LLDFFDKYFPDAI 58
+ + ++ + + + +P T RA L +F + P
Sbjct: 214 PGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQ 273
Query: 59 PLIGA---ERLVA-DFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGF 114
LI A + + + + +V ++GDA H+ P GQG A
Sbjct: 274 KLIAALDPQTTNRIEIHDIEPFS-------RLVR-GRVALLGDAGHSTTPDIGQGGCAAM 325
Query: 115 EDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAI 149
ED +L + Q D L ++ R +
Sbjct: 326 EDAVVLGAVFRQTR-DIAAALREYEAQRCDRVRDL 359
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 51.2 bits (122), Expect = 8e-08
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 5 FLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAE 64
+H G+ M+I N + V L EK G + + + +
Sbjct: 268 AIHSAESGSIMIIPRENNLVRFYVQLQARAEKGGRVDRTKFTPEVVIANAKKIFHPYTFD 327
Query: 65 RLVADFFS------RKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
D+F+ R + K+++V I GDA H P GQGMN D
Sbjct: 328 VQQLDWFTAYHIGQRVT--------EKFSKDERVFIAGDACHTHSPKAGQGMNTSMMD 377
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 50.8 bits (122), Expect = 9e-08
Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 13/119 (10%)
Query: 2 DPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLI 61
++ F + + + S EK R + + + +
Sbjct: 196 SHELIYANHPRGFALCSQRSATRSQYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKL 255
Query: 62 GAERL----VADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+A S P ++ + GDAAH + P +G+N D
Sbjct: 256 VTGPSLEKSIAPLRSFVVEP--------MQH-GRLFLAGDAAHIVPPTGAKGLNLAASD 305
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 51.1 bits (122), Expect = 9e-08
Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 11/179 (6%)
Query: 1 MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLG--TARALLDFFDKYFPDAI 58
+ I ++ + P +D ++V L + K + A A A+
Sbjct: 222 LKGTTYSITFEDGWVWMI-PIKDDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKCAKAM 280
Query: 59 PLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCC 118
++G V + + S + D+ + GDAA P + QG++ +
Sbjct: 281 DILGGAEQVDEV---RIVQDWSYDTEVFSA-DRFFLCGDAACFTDPLFSQGVHLASQSAV 336
Query: 119 ILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKR 174
+ + ++ V + + E Y S WRKR
Sbjct: 337 SAAAAIDRITRHGDEKDAVHAWYNRTYREAYEQYHQFLASFY-TFASFTEPDSEFWRKR 394
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 48.9 bits (117), Expect = 4e-07
Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 10/110 (9%)
Query: 41 GTARALLDFFDKYFPDAIPLI-GAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAA 99
R + F L+ A + +VL+IGDAA
Sbjct: 257 HNLRQFHSKGESLFKPFRDLVLNASSPFVTVVADATVD-------RMVH-GRVLLIGDAA 308
Query: 100 HAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAI 149
P G +D L ++ + D L + + A
Sbjct: 309 VTPRPHAAAGGAKASDDARTLAEVFTKNH-DLRGSLQSWETRQLQQGHAY 357
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 48.8 bits (117), Expect = 4e-07
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 12/155 (7%)
Query: 2 DPNFLHIWPRGTFMMIALPNQDHS---WTVTLFMPFEKFGLLGTARALLDFFDKYFPDAI 58
+ N L++ +G D + + + +L ++ D
Sbjct: 199 ERNRLYVDSQGGLAYFYPIGFDRARLVVSFPR-EEARELMADTRGESLRRRLQRFVGDES 257
Query: 59 PLI-GAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDC 117
A + K P+ + + Y D V ++GDA H + P GQGMN ED
Sbjct: 258 AEAIAAVTGTSR---FKGIPIGYLNLDRYWA-DNVAMLGDAIHNVHPITGQGMNLAIEDA 313
Query: 118 CILQDLM---IQYDEDFGKVLPKFTEVRQHDAEAI 149
L D + ++ L + R +AI
Sbjct: 314 SALADALDLALRDACALEDALAGYQAERFPVNQAI 348
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 48.4 bits (116), Expect = 7e-07
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 11/117 (9%)
Query: 2 DPNFLHIWPRGTFMMIALPNQDHSWTVTLF-MPFEKFGLLGTARALLDFFDKYFPDAIPL 60
P G M L + V P + + + + + I
Sbjct: 197 PRPIGETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISH 256
Query: 61 IGAERL-VADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+ +R+ + Y + +VL+ GD+AH +P GQGMN +D
Sbjct: 257 GEPVWVSAFGDPARQVSA--------YRR-GRVLLAGDSAHVHLPAGGQGMNVSVQD 304
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 47.4 bits (113), Expect = 2e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFED 116
V + GDAAH + P G GMN G
Sbjct: 311 VFLTGDAAHTLSPSGGFGMNTGIGS 335
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 47.0 bits (112), Expect = 2e-06
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFED 116
V + GDAA P G NA D
Sbjct: 303 VFLAGDAAKVTPPTGGMSGNAAVAD 327
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 46.5 bits (111), Expect = 3e-06
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Query: 89 NDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEA 148
++ ++GDAAH M P G + D L + + + D L ++ E R+ A
Sbjct: 302 RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR-NADVAAALREYEEARRPTANK 360
Query: 149 ICDLAMYN----YIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLY 191
I + T+ S S+ + +
Sbjct: 361 IILANREREKEEWAAASRPKTEKSAALEAITGSYRNQVERPRLEHHH 407
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 46.2 bits (110), Expect = 3e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFED 116
VL+ GDAAH P GQG+N G +D
Sbjct: 324 VLLAGDAAHVHFPIGGQGLNTGLQD 348
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 46.1 bits (110), Expect = 4e-06
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 92 VLIIGDAAHAMVPFYGQGMNAGFED 116
V++ GD+AH +P GQGMN +D
Sbjct: 279 VILAGDSAHIHLPAGGQGMNTSIQD 303
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 45.7 bits (108), Expect = 6e-06
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 67 VADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+ + + + P +V I GDA H P GQGMN +D
Sbjct: 323 ICAKYDDVVDAVAT----PDSPLPRVFIAGDACHTHSPKAGQGMNFSMQD 368
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 43.2 bits (102), Expect = 3e-05
Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 7/108 (6%)
Query: 10 PRGTFMMIALPNQDHSWTVTLFMPFEKF-GLLGTARALLDFFDKYFPDAIPLIGAERLVA 68
P+ +I + + +V F GT + +E +
Sbjct: 213 PKVWIWVIPFS--NGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERFKSEEFLF 270
Query: 69 DFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
+ + +I + + D ++ G+A + P + G E
Sbjct: 271 EP---RTIEGYAISASKLYG-DGFVLTGNATEFLDPIFSSGATFAMES 314
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 42.2 bits (99), Expect = 7e-05
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 5 FLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKF-GLLGTARALLDFFDKYFPDAIPLIGA 63
+ G F I P D +V + E + A L + P +
Sbjct: 211 LSAAFQDGWFWYI--PLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAP 268
Query: 64 ERLV--ADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFED 116
V D+ + S + K + + ++GDAA + P + G++
Sbjct: 269 ATRVTTGDYGEIRIRKDYSYCNTSFWK-NGMALVGDAACFVDPVFSSGVHLATYS 322
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 35.9 bits (83), Expect = 0.008
Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 44 RALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMV 103
++ +++ KY P + +L+ + A + + + + +++IGD+ +
Sbjct: 240 PSIHEYYKKYLDKYAPDVDKSKLLV----KGGALVPTRRPLYTMAWNGIIVIGDSGFTVN 295
Query: 104 PFYGQGMNAGFE 115
P +G G +
Sbjct: 296 PVHGGGKGSAMI 307
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.010
Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 49/205 (23%)
Query: 5 FLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKF-------GLLGTARALLDFFDKYFPDA 57
F I P T A ++ + L F + +G +L+ F +
Sbjct: 37 FNKILPEPT-EGFAADDEPTT-PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 58 IPLIGAE--RLVADFFSRKAAPLIS----IKC---------NPYHKNDKVLIIGDA---- 98
L G + L A L+ IK P+ K +
Sbjct: 95 Y-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 99 AHAMVPFYGQGMNAG-FEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNY 157
A + F GQG FE+ L+DL Y V AE + +L
Sbjct: 154 AQLVAIFGGQGNTDDYFEE---LRDL---YQTYHVLVGDLIKFS----AETLSELI---- 199
Query: 158 IEMRDLVTKSSFLWRKRFDSFLFWM 182
+ ++ + + L W+
Sbjct: 200 ----RTTLDAEKVFTQGLN-ILEWL 219
Score = 32.7 bits (74), Expect = 0.12
Identities = 35/198 (17%), Positives = 53/198 (26%), Gaps = 82/198 (41%)
Query: 37 FGLLGTARA----LLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKV 92
FG G L D + Y LV D A L +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHV----------LVGDLIKFSAETLSELIRTTLDAE--- 206
Query: 93 LIIGDAAHAMVPFYGQGMNAGFEDCCI---LQDLMIQYDEDFGKVLP---KFTEVRQ--H 144
+ QG+N I L++ D+D+ +P V Q H
Sbjct: 207 -----------KVFTQGLN-------ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 145 DAEAICDLAMYNYIEMR-----------DLVTKSSFL-----WRKRFDSF---------- 178
L + E+R LVT + + W +SF
Sbjct: 249 YV-VTAKLLGFTPGELRSYLKGATGHSQGLVT-AVAIAETDSW----ESFFVSVRKAITV 302
Query: 179 LFWM-------FPRLWIP 189
LF++ +P +P
Sbjct: 303 LFFIGVRCYEAYPNTSLP 320
Score = 30.0 bits (67), Expect = 0.74
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 39/141 (27%)
Query: 43 ARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISI-KCNPYHKNDKVLIIGDAAHA 101
A+ + + D +F D G FS ++ I NP N + G+
Sbjct: 1642 AQDVWNRADNHFKDT---YG--------FS-----ILDIVINNP--VNLTIHFGGEKGKR 1683
Query: 102 MVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDL------AMY 155
+ Y FE D ++ ++ F ++ T + + A+
Sbjct: 1684 IRENY---SAMIFETIV---DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 156 NYIEMRDLVTKSSF-LWRKRF 175
L+ K++F + +
Sbjct: 1738 -------LMEKAAFEDLKSKG 1751
Score = 28.5 bits (63), Expect = 2.2
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 25/80 (31%)
Query: 99 AHAMVPF---YGQGMNAGFEDCCIL--QDLMI---QYDEDFGKVLPKFTEVRQHDAEAIC 150
A++ P +G E +L Q E F K+LP+ TE D E
Sbjct: 3 AYSTRPLTLSHGS-----LE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 151 DLAMYNYIEMRDLVTKSSFL 170
+LV K FL
Sbjct: 57 PA---------ELVGK--FL 65
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 35.1 bits (80), Expect = 0.015
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 5 FLHIWPRGTFMMIALPNQDHSWTVTLFMP--FEKFGLLGTARALLDFFDKY----FPDAI 58
F+ + + + + QD S T L L ARA DF A
Sbjct: 302 FVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQ 361
Query: 59 PLIGAERLVA-DFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDC 117
G + A DF S A + + + ++GD G G+ GF
Sbjct: 362 DARGRPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAA 421
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 31.5 bits (71), Expect = 0.23
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 18/74 (24%)
Query: 3 PNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLL---GTARALLDFFDKYFPDAIP 59
LH P+G M I T PF GL G ARA +DF
Sbjct: 100 NRTLHPMPKGAVMGIP----------TKIAPFVSTGLFSLSGKARAAMDFILPASKT--- 146
Query: 60 LIGAERLVADFFSR 73
++ + +FF R
Sbjct: 147 --KDDQSLGEFFRR 158
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus
aureus subsp}
Length = 396
Score = 30.0 bits (68), Expect = 0.73
Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 17/98 (17%)
Query: 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQ 143
P IIG AHA P +G++A I + + + + T
Sbjct: 198 APTQMLISAKIIGKTAHASTP--KEGVSAIN----IAAKAISRMKLGQ---VDEITTANI 248
Query: 144 ------HDAEAICDLAMYNYIEMRDLVTKSSFLWRKRF 175
+ D + R + +
Sbjct: 249 GKFHGGSATNIVADEVILEAE-ARSH-DPERIKTQVKH 284
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family
M20/M25/M structural genomics, joint center for
structural genomics; 2.04A {Bacillus cereus atcc 10987}
Length = 373
Score = 29.6 bits (67), Expect = 0.80
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 16/98 (16%)
Query: 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQ 143
P +I G AHA V +G++A + + + T
Sbjct: 177 APTQAKVNAIIRGKTAHAGVA-PEKGVSAITIAAKAIA--KMPLGR-----IDSETTANI 228
Query: 144 ------HDAEAICDLAMYNYIEMRDLVTKSSFLWRKRF 175
+CD R L +
Sbjct: 229 GRFEGGTQTNIVCDHVQIFAE-ARSL-INEKMEAQVAK 264
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 29.2 bits (66), Expect = 1.00
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 21/122 (17%)
Query: 2 DPNFLHIW-----PRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPD 56
DP++ + P G + P + V + + LD F + P
Sbjct: 194 DPDYTDFYLGSIAPAGYIWVF--PKGEGMANVGIGSSINWIHNRFELKNYLDRFIENHPG 251
Query: 57 AIPLIGAERLVADFFSRKAA--PLISIKCNPYHKNDKVLIIGDAAHAMV-PFYGQGMNAG 113
L + + + +K ++++GDAA ++ P G G+
Sbjct: 252 ---LKKGQDI-----QLVTGGVSVSKVKMPITMPG--LMLVGDAA-RLIDPITGGGIANA 300
Query: 114 FE 115
Sbjct: 301 IV 302
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 29.3 bits (65), Expect = 1.1
Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 7/72 (9%)
Query: 6 LHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAER 65
+I GT +++ + + LL+ + +
Sbjct: 98 RYIARNGTPVLL-------PSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHE 150
Query: 66 LVADFFSRKAAP 77
V+ FF R
Sbjct: 151 SVSGFFQRHFGK 162
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 29.1 bits (65), Expect = 1.4
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 66 LVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMI 125
+ + S A + ++ +++IG AHA P G N+ L
Sbjct: 235 VKLAYESFLADKELDGSFEINDESADIVLIGQGAHASAPQ--VGKNSATFLALFLDQYAF 292
Query: 126 QYDE 129
+
Sbjct: 293 AGRD 296
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 511
Score = 29.0 bits (65), Expect = 1.6
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 19/141 (13%)
Query: 31 FMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVAD---FFSRKAAPLISIKCNPYH 87
+ G++ TAR + + E + S+ A SI C
Sbjct: 244 SVRITPMGVVETARCIRAI-QGVLNAQGAGVNYEAFIEQQTREVSQAAWFSRSIDC-QNL 301
Query: 88 KNDKVLIIGDA--AHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHD 145
K ++ GD A AM + M G + +YD D+ + EV
Sbjct: 302 TGKKAVVFGDNTHAAAMTKILSREM--GIH--VVWAGTYCKYDADWFR-----AEVAGFC 352
Query: 146 AEAICDLAMYNYIEMRDLVTK 166
E + + D + +
Sbjct: 353 DEVLITDDHT---VVGDAIAR 370
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 27.8 bits (62), Expect = 3.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 114 FEDCCILQDLMIQYDEDFGKVLPKFTEVRQHD 145
F + L +Q +F K LP F ++ Q D
Sbjct: 70 FRQITEMTILTVQLIVEFAKGLPGFAKISQSD 101
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 27.8 bits (62), Expect = 3.2
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 104 PFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHD 145
P F + L +Q +F K LP F ++ + D
Sbjct: 108 PEEENVAEERFRHITEITILTVQLIVEFSKRLPGFDKLIRED 149
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 27.4 bits (61), Expect = 3.9
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 121 QDLMIQYDEDFGKVLPKFTEVRQHDAEAICDL--AMYN----YIEMRDLVTKSSFLWRKR 174
D +++D+ F L ++ R++ + + DL A+ N ++++ + + +
Sbjct: 342 GDWTVKFDKTFMDNLERY---RKYHSSKLMDLLRALRNKYHHFMDLPEDIAELMGPVPDG 398
Query: 175 FDSFLFWMFPRLWIPLYNAV 194
F + FP L I +Y V
Sbjct: 399 FYDYFTKRFPNLLIGVYMIV 418
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 4.7
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 22/48 (45%)
Query: 35 EKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIK 82
EK L + L Y D+ AP ++IK
Sbjct: 18 EKQAL----KKLQASLKLYADDS------------------APALAIK 43
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 27.2 bits (60), Expect = 4.8
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 114 FEDCCILQDLMIQYDEDFGKVLPKFTEVRQHD 145
F C + +F K +P F + +D
Sbjct: 72 FHCCQCTSVETVTELTEFAKAIPGFANLDLND 103
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 6.9
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 26 WTVTLFMPFEKFGLLGTARALLDFFDKYFPDA--IPLIGAERLVADFFSRKAAPLISIKC 83
W + +P F + L+ D A I L R++ +K+A I+
Sbjct: 564 WDLDAIIP---FAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSA--RGIET 618
Query: 84 NPYHKNDKVLIIGDAAHAMVPFYGQGM 110
P V++ H F G GM
Sbjct: 619 RPAQ----VILPMSPNHGT--FGGDGM 639
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A
{Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB:
1vix_A
Length = 417
Score = 26.8 bits (59), Expect = 7.2
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 84 NPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQ 143
N + + I+G+ H G +NA I + DE P+ TE +
Sbjct: 207 NFNAASVNIKIVGNNVHPGTA-KGVMVNALSLAARIHA--EVPADEA-----PETTEGYE 258
Query: 144 -----HDAEAICDLAMYNYIEMRDLVTKSSFLWRKRF 175
+ D A +YI +RD + F RKR
Sbjct: 259 GFYHLASMKGTVDRAEMHYI-IRDF-DRKQFEARKRK 293
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 26.7 bits (59), Expect = 7.9
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 101 AMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHD 145
+ + ++ L I +F K LP FT + D
Sbjct: 60 SSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIAD 104
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 26.2 bits (58), Expect = 9.7
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 114 FEDCCILQDLMIQYDEDFGKVLPKFTEVRQHD 145
++ L I +F K LP FT + D
Sbjct: 70 WDKFSELSTKCIIKTVEFAKQLPGFTTLTIAD 101
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 26.3 bits (58), Expect = 9.7
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 104 PFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHD 145
P + F L + +Q DF K LP F ++ + D
Sbjct: 80 PHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSRED 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.456
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,772,256
Number of extensions: 223968
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 56
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.6 bits)