RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12250
         (235 letters)



>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 288

 Score = 43.2 bits (100), Expect = 9e-06
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 83  CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVR 142
             P+    ++ ++GDAAH M P    G +    D   L    +  + D    L ++ E R
Sbjct: 182 PLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAA-LARNADVAAALREYEEAR 240

Query: 143 QHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRL 186
           +  A  I         E     ++     +    + L  +    
Sbjct: 241 RPTANKIILANREREKEEWAAASRP----KTEKSAALEAITGSY 280


>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living
           yeast (Trichosporon cutaneum) [TaxId: 5554]}
          Length = 360

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 83  CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFG--KVLPKFTE 140
              + K+++V I GDA H   P  GQGMN    D   L   +           +L  + E
Sbjct: 242 TEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEE 301

Query: 141 VRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLR 200
            RQ  A+A+ D       +   L +                +F   ++      + + + 
Sbjct: 302 ERQPFAQALIDFDH----QFSRLFSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAIN 357

Query: 201 YS 202
           Y 
Sbjct: 358 YD 359


>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
           DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
          Length = 265

 Score = 32.4 bits (72), Expect = 0.039
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 83  CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVR 142
                 + +VL+IGDAA    P    G     +D   L ++  + + D    L  +   +
Sbjct: 163 TVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK-NHDLRGSLQSWETRQ 221

Query: 143 QHDAEAICDLA 153
                A  +  
Sbjct: 222 LQQGHAYLNKV 232


>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase,
           PHBH {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 292

 Score = 27.2 bits (59), Expect = 1.5
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 83  CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY 127
                ++ ++ + GDAAH + P   +G+N    D   L  L+++ 
Sbjct: 170 PAERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKA 214


>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
           extorquens [TaxId: 408]}
          Length = 323

 Score = 26.0 bits (56), Expect = 4.1
 Identities = 18/176 (10%), Positives = 36/176 (20%), Gaps = 9/176 (5%)

Query: 16  MIALPNQDHSWTVTLFMPFEKFGLLGT----ARALLDFFDKYFPDAIPLIGAERLVADFF 71
                 +          P    G LG      R  +   +    D I +       ++  
Sbjct: 101 DKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 160

Query: 72  SRKAAPLISIKCNPYHKNDKVLI---IGDAAHAMV--PFYGQGMNAGFEDCCILQDLMIQ 126
                    +   P   ++   I   I + A  +                        + 
Sbjct: 161 VADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALH 220

Query: 127 YDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWM 182
                                   D       + R  +T +  +  KR +  + WM
Sbjct: 221 ILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQDVKWM 276


>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 242

 Score = 25.8 bits (56), Expect = 4.4
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 76  APLIS--IKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGK 133
             LI   +KC P     +  I+            Q   + F   C + D  +    ++ +
Sbjct: 4   PHLILELLKCEPDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLFSIVEWAR 63

Query: 134 VLPKFTEVRQHD 145
               F E++  D
Sbjct: 64  SSIFFRELKVDD 75


>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
           {Thermobifida fusca [TaxId: 2021]}
          Length = 235

 Score = 25.9 bits (55), Expect = 4.7
 Identities = 13/114 (11%), Positives = 26/114 (22%)

Query: 88  KNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAE 147
              +V +IG  +  +         A                 +         ++++  AE
Sbjct: 31  SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAE 90

Query: 148 AICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRY 201
              +         R    KS+              + +   P   A     LR 
Sbjct: 91  FREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRD 144


>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
          N-terminal microtubule binding domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 120

 Score = 24.3 bits (53), Expect = 9.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 29 TLFMPFEKFGLLGTARALLDFFDKYFPDAIPL 60
          +L +   K   L +  A   F D  FP +I L
Sbjct: 15 SLQLNLTKIEQLCSGAAYCQFMDMLFPGSIAL 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.456 

Gapped
Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 932,257
Number of extensions: 43244
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 21
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)