Query psy12252
Match_columns 356
No_of_seqs 278 out of 1999
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:38:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 1.1E-32 3.9E-37 242.6 10.5 188 18-356 4-191 (192)
2 2xjy_A Rhombotin-2; oncoprotei 99.9 2.7E-26 9.3E-31 189.5 2.3 125 171-343 3-131 (131)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 8.3E-26 2.8E-30 186.6 4.0 118 21-226 2-123 (131)
4 1rut_X Flinc4, fusion protein 99.9 6.5E-26 2.2E-30 198.7 3.1 134 170-351 5-142 (188)
5 1rut_X Flinc4, fusion protein 99.9 2.9E-25 1E-29 194.6 6.4 128 19-245 3-134 (188)
6 2xqn_T Testin, TESS; metal-bin 99.9 2.6E-25 8.7E-30 182.4 4.9 116 20-225 2-120 (126)
7 2xqn_T Testin, TESS; metal-bin 99.9 2.1E-25 7.1E-30 182.9 3.4 120 171-340 4-126 (126)
8 2jtn_A LIM domain-binding prot 99.9 8.1E-24 2.8E-28 184.5 7.1 120 18-227 57-178 (182)
9 2rgt_A Fusion of LIM/homeobox 99.9 7.1E-24 2.4E-28 182.6 5.4 117 20-226 5-123 (169)
10 2rgt_A Fusion of LIM/homeobox 99.9 4.1E-24 1.4E-28 184.1 3.4 124 170-343 6-131 (169)
11 2jtn_A LIM domain-binding prot 99.9 1.5E-23 5E-28 182.8 4.3 120 169-338 59-180 (182)
12 2cup_A Skeletal muscle LIM-pro 99.9 2.3E-22 7.8E-27 158.3 6.5 66 18-83 2-68 (101)
13 2cup_A Skeletal muscle LIM-pro 99.8 4.4E-21 1.5E-25 150.9 5.1 95 170-313 5-101 (101)
14 1m3v_A FLIN4, fusion of the LI 99.8 6.9E-19 2.4E-23 143.2 5.9 110 19-129 3-116 (122)
15 1j2o_A FLIN2, fusion of rhombo 99.7 2.9E-18 9.8E-23 137.8 7.8 103 21-129 3-108 (114)
16 1a7i_A QCRP2 (LIM1); LIM domai 99.7 1.5E-18 5.2E-23 130.8 3.3 79 14-93 1-79 (81)
17 1a7i_A QCRP2 (LIM1); LIM domai 99.7 9.6E-19 3.3E-23 131.9 2.1 74 280-354 8-81 (81)
18 1x3h_A Leupaxin; paxillin fami 99.7 4.3E-18 1.5E-22 127.9 4.4 63 281-345 17-79 (80)
19 2ehe_A Four and A half LIM dom 99.7 3.4E-18 1.2E-22 129.2 3.5 64 281-345 17-81 (82)
20 2dlo_A Thyroid receptor-intera 99.7 8.1E-18 2.8E-22 126.8 4.6 64 281-345 17-80 (81)
21 2cuq_A Four and A half LIM dom 99.7 8.7E-18 3E-22 126.2 4.2 63 281-345 17-79 (80)
22 1m3v_A FLIN4, fusion of the LI 99.7 3.8E-18 1.3E-22 138.8 2.4 113 170-344 5-119 (122)
23 1x63_A Skeletal muscle LIM-pro 99.7 1.1E-17 3.9E-22 126.2 3.5 64 281-345 17-81 (82)
24 2dj7_A Actin-binding LIM prote 99.6 1.1E-16 3.9E-21 120.2 5.8 72 13-85 7-78 (80)
25 1x6a_A LIMK-2, LIM domain kina 99.6 5.6E-17 1.9E-21 122.1 3.6 64 281-345 17-81 (81)
26 1iml_A CRIP, cysteine rich int 99.6 1E-16 3.5E-21 119.2 4.9 69 22-90 1-70 (76)
27 1iml_A CRIP, cysteine rich int 99.6 1.6E-16 5.6E-21 118.0 4.2 66 281-347 2-68 (76)
28 1x68_A FHL5 protein; four-and- 99.6 3.7E-16 1.3E-20 116.1 6.1 69 19-87 3-74 (76)
29 2cu8_A Cysteine-rich protein 2 99.6 1.7E-16 5.8E-21 118.0 4.1 65 280-345 10-75 (76)
30 2cu8_A Cysteine-rich protein 2 99.6 2.8E-16 9.4E-21 116.8 5.2 68 19-86 7-75 (76)
31 2d8y_A Eplin protein; LIM doma 99.6 3.5E-16 1.2E-20 120.5 5.3 73 13-85 7-79 (91)
32 2dj7_A Actin-binding LIM prote 99.6 3.8E-16 1.3E-20 117.3 5.3 65 279-345 15-79 (80)
33 2ehe_A Four and A half LIM dom 99.6 2.6E-16 8.8E-21 118.7 4.2 78 8-85 2-80 (82)
34 1x3h_A Leupaxin; paxillin fami 99.6 3.7E-16 1.3E-20 117.3 4.8 77 8-85 2-78 (80)
35 2cur_A Skeletal muscle LIM-pro 99.6 3.3E-16 1.1E-20 114.1 3.8 67 18-85 2-68 (69)
36 2egq_A FHL1 protein; LIM domai 99.6 4E-16 1.4E-20 116.2 4.1 57 281-338 17-77 (77)
37 2d8z_A Four and A half LIM dom 99.6 7E-16 2.4E-20 112.7 4.9 66 19-85 3-68 (70)
38 1j2o_A FLIN2, fusion of rhombo 99.6 5E-16 1.7E-20 124.7 4.4 105 171-344 4-111 (114)
39 2cur_A Skeletal muscle LIM-pro 99.6 4.7E-16 1.6E-20 113.3 3.6 64 280-345 6-69 (69)
40 1x4k_A Skeletal muscle LIM-pro 99.6 7.4E-16 2.5E-20 113.2 4.6 67 19-85 3-70 (72)
41 2d8y_A Eplin protein; LIM doma 99.6 1.7E-15 6E-20 116.5 6.4 65 279-344 15-79 (91)
42 1wyh_A SLIM 2, skeletal muscle 99.6 6.4E-16 2.2E-20 113.5 3.7 67 19-85 3-70 (72)
43 2d8z_A Four and A half LIM dom 99.6 7.5E-16 2.6E-20 112.5 4.0 64 280-345 6-69 (70)
44 2cuq_A Four and A half LIM dom 99.6 1.2E-15 3.9E-20 114.5 5.0 77 8-85 2-78 (80)
45 1x68_A FHL5 protein; four-and- 99.6 1.2E-15 4.2E-20 113.3 4.8 66 280-346 6-74 (76)
46 2dar_A PDZ and LIM domain prot 99.6 1.4E-15 4.9E-20 116.7 5.1 68 17-85 21-88 (90)
47 2dlo_A Thyroid receptor-intera 99.6 1.4E-15 4.7E-20 114.5 4.8 76 8-85 3-79 (81)
48 1nyp_A Pinch protein; LIM doma 99.6 6.1E-16 2.1E-20 111.7 2.7 64 19-83 3-66 (66)
49 1g47_A Pinch protein; LIM doma 99.6 9.7E-16 3.3E-20 114.0 3.9 68 18-85 8-76 (77)
50 1x63_A Skeletal muscle LIM-pro 99.6 1.3E-15 4.3E-20 114.9 4.5 77 9-85 3-80 (82)
51 1x4l_A Skeletal muscle LIM-pro 99.6 1.3E-15 4.6E-20 111.8 4.2 66 19-84 3-71 (72)
52 1wyh_A SLIM 2, skeletal muscle 99.6 8E-16 2.7E-20 113.0 2.6 65 280-345 6-71 (72)
53 1nyp_A Pinch protein; LIM doma 99.6 6.6E-16 2.3E-20 111.5 2.1 61 280-342 6-66 (66)
54 2dar_A PDZ and LIM domain prot 99.6 2.3E-15 7.9E-20 115.6 5.0 65 279-345 25-89 (90)
55 1x62_A C-terminal LIM domain p 99.6 1E-15 3.5E-20 114.6 2.6 64 280-345 16-79 (79)
56 1x64_A Alpha-actinin-2 associa 99.5 3.5E-15 1.2E-19 114.3 5.4 66 278-345 24-89 (89)
57 1x4k_A Skeletal muscle LIM-pro 99.5 1.6E-15 5.4E-20 111.4 3.1 65 280-345 6-71 (72)
58 1x62_A C-terminal LIM domain p 99.5 1.6E-15 5.4E-20 113.6 2.4 67 18-85 12-78 (79)
59 2d8x_A Protein pinch; LIM doma 99.5 3.5E-15 1.2E-19 109.0 3.8 64 19-83 3-66 (70)
60 1x64_A Alpha-actinin-2 associa 99.5 3.7E-15 1.3E-19 114.2 4.1 66 19-85 23-88 (89)
61 2co8_A NEDD9 interacting prote 99.5 5.9E-15 2E-19 111.3 5.1 66 277-342 13-79 (82)
62 1x4l_A Skeletal muscle LIM-pro 99.5 3.9E-15 1.3E-19 109.3 3.9 63 280-343 6-71 (72)
63 2egq_A FHL1 protein; LIM domai 99.5 7.3E-15 2.5E-19 109.3 5.4 71 8-78 2-76 (77)
64 1g47_A Pinch protein; LIM doma 99.5 2.5E-15 8.5E-20 111.8 2.2 64 280-344 12-76 (77)
65 1b8t_A Protein (CRP1); LIM dom 99.5 5E-15 1.7E-19 129.8 3.9 77 21-97 115-191 (192)
66 1v6g_A Actin binding LIM prote 99.5 7E-15 2.4E-19 110.5 4.1 61 281-343 17-78 (81)
67 2co8_A NEDD9 interacting prote 99.5 1.2E-14 4.2E-19 109.5 4.7 65 18-82 12-78 (82)
68 3f6q_B LIM and senescent cell 99.5 9.9E-15 3.4E-19 106.9 4.0 66 16-81 6-72 (72)
69 2d8x_A Protein pinch; LIM doma 99.5 6.8E-15 2.3E-19 107.4 3.0 62 280-343 6-67 (70)
70 2l4z_A DNA endonuclease RBBP8, 99.5 1.5E-14 5.2E-19 117.4 4.8 64 18-81 58-123 (123)
71 1wig_A KIAA1808 protein; LIM d 99.5 1E-14 3.5E-19 107.4 3.4 64 19-83 3-67 (73)
72 2cor_A Pinch protein; LIM doma 99.5 9.8E-15 3.3E-19 109.3 3.2 65 18-84 12-76 (79)
73 1x61_A Thyroid receptor intera 99.5 9.9E-15 3.4E-19 107.1 2.9 64 19-82 3-67 (72)
74 1x6a_A LIMK-2, LIM domain kina 99.5 1.6E-14 5.4E-19 108.6 3.3 75 9-84 3-79 (81)
75 2cor_A Pinch protein; LIM doma 99.5 1.6E-14 5.3E-19 108.1 3.0 62 280-344 16-77 (79)
76 3f6q_B LIM and senescent cell 99.4 2.3E-14 7.8E-19 104.9 2.7 60 280-340 12-72 (72)
77 1wig_A KIAA1808 protein; LIM d 99.4 3.3E-14 1.1E-18 104.7 2.7 61 280-342 6-67 (73)
78 2iyb_E Testin, TESS, TES; LIM 99.4 3.8E-14 1.3E-18 101.9 3.0 59 21-79 2-64 (65)
79 1x61_A Thyroid receptor intera 99.4 4.4E-14 1.5E-18 103.6 2.5 61 280-341 6-67 (72)
80 2l4z_A DNA endonuclease RBBP8, 99.4 9.2E-14 3.1E-18 112.8 4.6 61 279-340 61-123 (123)
81 2iyb_E Testin, TESS, TES; LIM 99.4 1.6E-13 5.4E-18 98.6 2.5 58 281-339 4-65 (65)
82 2l3k_A Rhombotin-2, linker, LI 99.4 1.4E-13 4.8E-18 111.8 1.9 63 281-344 10-74 (123)
83 2l3k_A Rhombotin-2, linker, LI 99.3 2.1E-13 7.3E-18 110.7 1.8 71 19-89 4-78 (123)
84 1v6g_A Actin binding LIM prote 99.3 5.1E-13 1.7E-17 100.2 3.4 72 10-82 4-76 (81)
85 1zfo_A LAsp-1; LIM domain, zin 98.1 6.7E-07 2.3E-11 53.8 0.8 28 280-307 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.0 1.4E-06 4.7E-11 52.4 0.6 28 22-49 4-31 (31)
87 1x4j_A Ring finger protein 38; 74.5 1.8 6.2E-05 30.4 2.5 41 19-59 21-71 (75)
88 2e6s_A E3 ubiquitin-protein li 73.1 3.7 0.00013 29.4 3.9 45 281-335 28-75 (77)
89 2l0b_A E3 ubiquitin-protein li 69.0 2.4 8.1E-05 31.1 2.1 41 19-59 38-88 (91)
90 1chc_A Equine herpes virus-1 r 67.8 3.6 0.00012 28.0 2.8 42 19-60 3-52 (68)
91 2ect_A Ring finger protein 126 63.9 8.3 0.00029 26.9 4.2 43 19-61 13-65 (78)
92 2ecm_A Ring finger and CHY zin 63.8 5.2 0.00018 25.7 2.9 40 20-59 4-54 (55)
93 2ct0_A Non-SMC element 1 homol 63.1 2.6 8.9E-05 30.0 1.3 31 19-49 13-43 (74)
94 3asl_A E3 ubiquitin-protein li 62.1 5.1 0.00017 28.1 2.6 46 281-336 20-68 (70)
95 3ng2_A RNF4, snurf, ring finge 61.8 2.5 8.5E-05 29.0 1.0 46 17-62 6-65 (71)
96 2ysm_A Myeloid/lymphoid or mix 59.6 15 0.00052 27.8 5.3 48 281-338 56-105 (111)
97 2ct0_A Non-SMC element 1 homol 59.3 3.1 0.00011 29.6 1.1 38 280-317 16-63 (74)
98 1jjd_A Metallothionein, SMTA; 59.0 2.7 9.4E-05 28.1 0.7 30 50-79 9-39 (55)
99 2xeu_A Ring finger protein 4; 57.1 3.5 0.00012 27.5 1.0 42 21-62 3-58 (64)
100 1wen_A Inhibitor of growth fam 55.9 22 0.00075 24.8 5.1 55 12-79 7-66 (71)
101 1iym_A EL5; ring-H2 finger, ub 55.6 6.2 0.00021 25.4 2.1 30 20-49 4-36 (55)
102 2ea6_A Ring finger protein 4; 55.5 4.8 0.00017 27.2 1.6 42 18-59 12-67 (69)
103 2eqg_A Tumor necrosis factor, 54.6 3 0.0001 26.2 0.3 20 320-339 20-39 (49)
104 2kiz_A E3 ubiquitin-protein li 54.5 9.4 0.00032 25.9 3.0 42 19-60 12-63 (69)
105 2ecn_A Ring finger protein 141 53.3 5.9 0.0002 27.0 1.7 41 19-61 13-61 (70)
106 2ep4_A Ring finger protein 24; 49.6 7.1 0.00024 27.0 1.7 40 20-59 14-63 (74)
107 2cs3_A Protein C14ORF4, MY039 49.0 6.7 0.00023 28.2 1.4 52 18-74 12-63 (93)
108 2vnf_A ING 4, P29ING4, inhibit 46.8 10 0.00034 25.6 2.0 50 15-77 4-58 (60)
109 2ecl_A Ring-box protein 2; RNF 46.2 8.2 0.00028 27.5 1.6 41 20-60 14-76 (81)
110 2ect_A Ring finger protein 126 45.3 43 0.0015 23.0 5.4 42 280-321 16-67 (78)
111 2g6q_A Inhibitor of growth pro 44.3 12 0.0004 25.5 2.1 50 15-77 5-59 (62)
112 2djb_A Polycomb group ring fin 42.3 7.4 0.00025 26.8 0.8 42 20-61 14-63 (72)
113 2d8s_A Cellular modulator of i 40.0 28 0.00095 24.8 3.6 33 17-49 11-49 (80)
114 2d8t_A Dactylidin, ring finger 39.4 16 0.00054 24.9 2.2 40 19-59 13-60 (71)
115 3shb_A E3 ubiquitin-protein li 39.1 22 0.00077 25.2 2.9 45 281-335 28-75 (77)
116 4gne_A Histone-lysine N-methyl 39.1 89 0.003 23.6 6.5 27 170-199 15-45 (107)
117 1weu_A Inhibitor of growth fam 39.0 33 0.0011 25.2 4.0 55 12-79 27-86 (91)
118 2gvi_A Conserved hypothetical 38.2 6 0.0002 33.9 -0.3 30 49-78 173-202 (204)
119 3nw0_A Non-structural maintena 38.2 9.7 0.00033 33.4 1.1 40 20-59 179-228 (238)
120 2l5u_A Chromodomain-helicase-D 36.9 46 0.0016 22.2 4.2 47 278-337 10-58 (61)
121 3nw0_A Non-structural maintena 36.5 12 0.00041 32.8 1.4 41 279-319 180-230 (238)
122 1t1h_A Gspef-atpub14, armadill 36.3 29 0.00098 24.0 3.2 40 20-60 7-55 (78)
123 2ysl_A Tripartite motif-contai 35.9 14 0.00048 25.2 1.4 29 20-49 19-47 (73)
124 2cs3_A Protein C14ORF4, MY039 34.7 25 0.00087 25.2 2.5 47 280-332 16-62 (93)
125 3v43_A Histone acetyltransfera 33.9 50 0.0017 25.0 4.4 29 21-49 5-41 (112)
126 2dmj_A Poly (ADP-ribose) polym 33.5 15 0.00052 27.9 1.3 20 16-35 20-39 (106)
127 2yur_A Retinoblastoma-binding 32.8 25 0.00087 24.1 2.4 38 20-58 14-62 (74)
128 4ap4_A E3 ubiquitin ligase RNF 32.6 21 0.00071 27.3 2.1 59 19-77 5-80 (133)
129 1v9x_A Poly (ADP-ribose) polym 31.4 18 0.0006 27.9 1.4 21 16-36 15-35 (114)
130 3c6w_A P28ING5, inhibitor of g 31.2 25 0.00084 23.5 2.0 47 18-77 6-57 (59)
131 2csy_A Zinc finger protein 183 31.1 22 0.00074 24.9 1.8 39 20-59 14-60 (81)
132 2e6r_A Jumonji/ARID domain-con 30.5 1.2E+02 0.0043 21.9 6.0 53 279-341 16-70 (92)
133 2ecy_A TNF receptor-associated 29.9 14 0.00046 24.8 0.5 13 20-32 14-26 (66)
134 2k16_A Transcription initiatio 27.7 37 0.0013 23.6 2.5 52 20-80 17-70 (75)
135 2lri_C Autoimmune regulator; Z 26.4 43 0.0015 22.9 2.6 48 19-78 10-59 (66)
136 2ku3_A Bromodomain-containing 26.0 36 0.0012 23.7 2.1 56 13-79 8-67 (71)
137 2y43_A E3 ubiquitin-protein li 26.0 16 0.00053 26.8 0.2 38 22-60 23-69 (99)
138 3od8_A Poly [ADP-ribose] polym 25.5 14 0.00047 28.7 -0.2 20 16-35 33-52 (116)
139 3odc_A Poly [ADP-ribose] polym 25.3 18 0.00063 27.7 0.5 20 16-35 14-33 (111)
140 2jrp_A Putative cytoplasmic pr 25.0 75 0.0026 22.8 3.7 10 172-181 4-13 (81)
141 2vpb_A Hpygo1, pygopus homolog 24.7 28 0.00095 23.8 1.3 30 19-48 6-39 (65)
142 2yt5_A Metal-response element- 24.6 72 0.0025 21.3 3.5 54 19-78 4-61 (66)
143 1v87_A Deltex protein 2; ring- 24.6 23 0.00078 26.6 1.0 29 21-49 25-70 (114)
144 2das_A Zinc finger MYM-type pr 24.3 37 0.0013 22.8 1.8 13 281-293 22-34 (62)
145 4ayc_A E3 ubiquitin-protein li 23.9 28 0.00094 27.3 1.4 38 22-60 54-99 (138)
146 4ap4_A E3 ubiquitin ligase RNF 23.8 47 0.0016 25.2 2.7 57 281-337 9-81 (133)
147 1jm7_B BARD1, BRCA1-associated 22.8 72 0.0024 24.0 3.6 38 49-87 23-61 (117)
148 2ecv_A Tripartite motif-contai 22.5 76 0.0026 21.8 3.4 13 20-32 18-30 (85)
149 2jne_A Hypothetical protein YF 22.4 51 0.0017 24.5 2.4 10 171-180 33-42 (101)
150 1e4u_A Transcriptional repress 22.4 21 0.00073 25.2 0.4 14 20-33 10-23 (78)
151 2d8v_A Zinc finger FYVE domain 22.4 24 0.00083 24.3 0.6 14 67-80 26-39 (67)
152 2gvi_A Conserved hypothetical 21.0 13 0.00043 31.9 -1.4 11 281-291 174-184 (204)
153 3ask_A E3 ubiquitin-protein li 21.0 71 0.0024 27.6 3.5 46 281-336 176-224 (226)
154 2ecw_A Tripartite motif-contai 20.8 64 0.0022 22.2 2.7 28 20-48 18-45 (85)
155 1g25_A CDK-activating kinase a 20.5 42 0.0014 22.2 1.5 28 21-48 3-34 (65)
156 2e5r_A Dystrobrevin alpha; ZZ 20.4 32 0.0011 23.4 0.9 38 40-79 5-45 (63)
157 2ct2_A Tripartite motif protei 20.3 59 0.002 22.7 2.5 29 20-48 14-45 (88)
158 3fl2_A E3 ubiquitin-protein li 20.0 48 0.0016 25.2 2.0 38 22-60 53-99 (124)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.98 E-value=1.1e-32 Score=242.62 Aligned_cols=188 Identities=47% Similarity=0.906 Sum_probs=144.6
Q ss_pred CCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCCccCCCcceeecc
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMD 97 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~~~~~ 97 (356)
-...++|..|+++|..++.+.++|+.||++||+|..|+++|.+..|++++|++||+.||.++|+++|.+|+++.|+
T Consensus 4 ~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~---- 79 (192)
T 1b8t_A 4 WGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGT---- 79 (192)
T ss_dssp CCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCC----
T ss_pred CCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCcccccccccccc----
Confidence 3456899999999997788889999999999999999999999999999999999999999999988766542211
Q ss_pred cccccccCCCCcccccCCceecccCcCcccCCCCCCCCCCCCcCCCCcccccccCCCCCccccccccccCCCCCCCCCCC
Q psy12252 98 AGMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCPRCG 177 (356)
Q Consensus 98 ~~~c~~~l~~~~~~~~~~~~~C~~c~~~~~~p~~~~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~ 177 (356)
T Consensus 80 -------------------------------------------------------------------------------- 79 (192)
T 1b8t_A 80 -------------------------------------------------------------------------------- 79 (192)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEecceeeccCCCcccccccccccCcCcCCCCccccCCCCceecccccccCCcccccccccccCCCcccCCCCCceeec
Q psy12252 178 GVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGYGHSPTLVST 257 (356)
Q Consensus 178 ~~I~~~~~i~a~~~~~H~~CF~C~~C~~~l~~~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~ 257 (356)
.+.++.|| |.+..+. . ....+ ..+ ....+.
T Consensus 80 ---------~~~~~~~~---~~~~~~~-------~---~~~~p--~~~-----------~~~~~~--------------- 109 (192)
T 1b8t_A 80 ---------LSTDKGES---LGIKYEE-------G---QSHRP--TNP-----------NASRMA--------------- 109 (192)
T ss_dssp ---------CCCCCCCC---CCCCCCC-------C---CCCCC--CCC-----------CCCCCC---------------
T ss_pred ---------EecCCCcc---ccccccc-------c---cccCC--CCc-----------Cccccc---------------
Confidence 12234455 2221110 0 01111 000 000000
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCcccccccccc
Q psy12252 258 SGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGK 337 (356)
Q Consensus 258 ~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~ 337 (356)
...++..+|++|+++|.+++.|.++++.||++||+|+.|+++|.++.|+ ..+|++||+.||.+
T Consensus 110 ----------------~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~ 172 (192)
T 1b8t_A 110 ----------------QKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLA-DKDGEIYCKGCYAK 172 (192)
T ss_dssp ----------------CCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEE-EETTEEEEHHHHHH
T ss_pred ----------------cccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCccc-ccCCEEeCHHHHHH
Confidence 1112234799999999988889999999999999999999999988877 69999999999999
Q ss_pred ccCCCccccCCCCCccccC
Q psy12252 338 NFGPKGCGFGLGAGALTMA 356 (356)
Q Consensus 338 ~f~~~~~~~~~~~~~~~~~ 356 (356)
+||++|.+++.++|+|.|+
T Consensus 173 ~f~~kc~~C~~~~g~~~~~ 191 (192)
T 1b8t_A 173 NFGPKGFGFGQGAGALIHS 191 (192)
T ss_dssp HTCCCCCCCCCCCCCCCCC
T ss_pred hcCCcCCCCCCcccceeec
Confidence 9999999999999999875
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.92 E-value=2.7e-26 Score=189.49 Aligned_cols=125 Identities=23% Similarity=0.415 Sum_probs=106.8
Q ss_pred CCCCCCCceEecceeeccCCCcccccccccccCcCcCCC--CccccCCCCceecccccccCCcccccccccccCCCcccC
Q psy12252 171 KGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS--INACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGY 248 (356)
Q Consensus 171 ~~C~~C~~~I~~~~~i~a~~~~~H~~CF~C~~C~~~l~~--~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~~ 248 (356)
.+|.+|+++|.+.+.+.|+++.||++||+|..|+++|.. ..|+ .++|++|| ..||.++++++
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC-----------~~~y~~~~~~~---- 66 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLC-----------RRDYLRLFGQD---- 66 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEE-EETTEEEC-----------HHHHHHHHCCC----
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEE-EECCEEee-----------cCchhhhCCCc----
Confidence 579999999998777899999999999999999999974 3454 48999999 77777777641
Q ss_pred CCCCceeecCCCCccccCCCCCCCCCCCCCCCCCCCCCceeecce-EEEeCCcccccCcccccccCCCCCCC-CCccCCC
Q psy12252 249 GHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAAE-QMISKNRIWHRRCFSCADCHRSLDST-NLNDGPD 326 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~~~L~~~-~~~~~~~ 326 (356)
.+|++|+++|.+.| .|.+.++.||++||+|+.|+++|..+ .|+ ..+
T Consensus 67 -------------------------------~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~~ 114 (131)
T 2xjy_A 67 -------------------------------GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYL-LIN 114 (131)
T ss_dssp -------------------------------EECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEE-EET
T ss_pred -------------------------------cChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEE-EEC
Confidence 15999999999766 46799999999999999999999644 465 589
Q ss_pred CccccccccccccCCCc
Q psy12252 327 NDIYCRGCYGKNFGPKG 343 (356)
Q Consensus 327 g~~yC~~c~~~~f~~~~ 343 (356)
|++||..||.++|++++
T Consensus 115 ~~~~C~~c~~~~~~~~~ 131 (131)
T 2xjy_A 115 SDIVCEQDIYEWTKING 131 (131)
T ss_dssp TEEEEGGGHHHHHHHHC
T ss_pred CEEEcHHHHHHHhhccC
Confidence 99999999999998754
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.91 E-value=8.3e-26 Score=186.57 Aligned_cols=118 Identities=23% Similarity=0.385 Sum_probs=100.4
Q ss_pred CCCCCCCCCccccceEEEeCCceeccCCcccccccccccC--CCccccCCcccCccccccccCCCCCccCCCcceeeccc
Q psy12252 21 NPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDS--TNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDA 98 (356)
Q Consensus 21 ~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~~~~~~ 98 (356)
.+.|.+|+++|.+.+.+.|+|+.||++||+|+.|+++|.. ..|++++|++||.+||.++|+++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~--------------- 66 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD--------------- 66 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC---------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc---------------
Confidence 4689999999998778889999999999999999999964 58999999999999999988652
Q ss_pred ccccccCCCCcccccCCceecccCcCcccCCCCCCCCCCCCcCCCCcccccccCCCCCccccccccccCCCCCCCCCCCc
Q psy12252 99 GMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCPRCGG 178 (356)
Q Consensus 99 ~~c~~~l~~~~~~~~~~~~~C~~c~~~~~~p~~~~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 178 (356)
.+|..|++
T Consensus 67 ------------------------------------------------------------------------~~C~~C~~ 74 (131)
T 2xjy_A 67 ------------------------------------------------------------------------GLCASCDK 74 (131)
T ss_dssp ------------------------------------------------------------------------EECTTTCC
T ss_pred ------------------------------------------------------------------------cChhhcCC
Confidence 14778888
Q ss_pred eEecce-eeccCCCcccccccccccCcCcCCC-CccccCCCCceeccccc
Q psy12252 179 VVFAAE-QVLAKGSEWHRKCFKCRDCNKTLDS-INACDGPDKDIYCKTCY 226 (356)
Q Consensus 179 ~I~~~~-~i~a~~~~~H~~CF~C~~C~~~l~~-~~~~~~~~g~~~C~~c~ 226 (356)
+|.+.+ .+.++++.||++||+|..|+++|.. ..|+ ..++++||..||
T Consensus 75 ~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~~~~~~C~~c~ 123 (131)
T 2xjy_A 75 RIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYL-LINSDIVCEQDI 123 (131)
T ss_dssp EECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEE-EETTEEEEGGGH
T ss_pred ccCccceeEeeCCceECccCcccCCCCCCCCCCCEEE-EECCEEEcHHHH
Confidence 998654 5689999999999999999999964 4454 479999994443
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.91 E-value=6.5e-26 Score=198.72 Aligned_cols=134 Identities=25% Similarity=0.577 Sum_probs=106.3
Q ss_pred CCCCCCCCceEecceeeccCCCcccccccccccCcCcCCC--CccccCCCCceecccccccCCcccccccccccCCCccc
Q psy12252 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS--INACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFG 247 (356)
Q Consensus 170 ~~~C~~C~~~I~~~~~i~a~~~~~H~~CF~C~~C~~~l~~--~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~ 247 (356)
..+|.+|+++|.+.+.+.|+++.||++||+|..|+++|.. ..|+ .++|++|| ..||.++|+++
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC-----------~~cy~~~~~~~--- 69 (188)
T 1rut_X 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILC-----------RNDYIRLFGNS--- 69 (188)
T ss_dssp CCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEE-EETTEEEC-----------HHHHHHHHSCC---
T ss_pred CCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEE-EeCCcccc-----------ccccccccccC---
Confidence 3689999999998777899999999999999999999986 3454 48999999 77777777651
Q ss_pred CCCCCceeecCCCCccccCCCCCCCCCCCCCCCCCCCCCceeecceE-EEeCCcccccCcccccccCCCCCCCC-CccCC
Q psy12252 248 YGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAAEQ-MISKNRIWHRRCFSCADCHRSLDSTN-LNDGP 325 (356)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~L~~~~-~~~~~ 325 (356)
.+|++|+++|.+.|. |.+.++.||++||+|..|+++|..+. |+ ..
T Consensus 70 --------------------------------~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~ 116 (188)
T 1rut_X 70 --------------------------------GACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YI 116 (188)
T ss_dssp --------------------------------EECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEE-EE
T ss_pred --------------------------------CccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEE-EE
Confidence 159999999997664 57999999999999999999997554 65 58
Q ss_pred CCccccccccccccCCCccccCCCCC
Q psy12252 326 DNDIYCRGCYGKNFGPKGCGFGLGAG 351 (356)
Q Consensus 326 ~g~~yC~~c~~~~f~~~~~~~~~~~~ 351 (356)
++++||+.||.++|++++.+.+.++|
T Consensus 117 ~g~~yC~~c~~~~~~~~~~~~g~~~~ 142 (188)
T 1rut_X 117 NGSLFCEHDRPTALINGHLNSGGSGG 142 (188)
T ss_dssp TTEEEEGGGCCTTTC-----------
T ss_pred CCeEECHHHHHHHhcccccccCCCCc
Confidence 99999999999999999988877655
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.91 E-value=2.9e-25 Score=194.58 Aligned_cols=128 Identities=24% Similarity=0.455 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccC--CCccccCCcccCccccccccCCCCCccCCCcceeec
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDS--TNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSM 96 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~~~~ 96 (356)
+..+.|..|+++|.+.+.+.|+|+.||++||+|..|+++|.. ..|++++|++||+.||.++|+++
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~------------- 69 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS------------- 69 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC-------------
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccC-------------
Confidence 456899999999998778889999999999999999999986 68999999999999999987652
Q ss_pred ccccccccCCCCcccccCCceecccCcCcccCCCCCCCCCCCCcCCCCcccccccCCCCCccccccccccCCCCCCCCCC
Q psy12252 97 DAGMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCPRC 176 (356)
Q Consensus 97 ~~~~c~~~l~~~~~~~~~~~~~C~~c~~~~~~p~~~~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C 176 (356)
.+|..|
T Consensus 70 --------------------------------------------------------------------------~~C~~C 75 (188)
T 1rut_X 70 --------------------------------------------------------------------------GACSAC 75 (188)
T ss_dssp --------------------------------------------------------------------------EECTTT
T ss_pred --------------------------------------------------------------------------CccccC
Confidence 147788
Q ss_pred CceEecce-eeccCCCcccccccccccCcCcCCCC-ccccCCCCceecccccccCCcccccccccccCCCc
Q psy12252 177 GGVVFAAE-QVLAKGSEWHRKCFKCRDCNKTLDSI-NACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKG 245 (356)
Q Consensus 177 ~~~I~~~~-~i~a~~~~~H~~CF~C~~C~~~l~~~-~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~ 245 (356)
+++|...+ .+.++++.||++||+|..|+++|..+ .|+ ..++++|| ..||.+++++++
T Consensus 76 ~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC-----------~~c~~~~~~~~~ 134 (188)
T 1rut_X 76 GQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YINGSLFC-----------EHDRPTALINGH 134 (188)
T ss_dssp CCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEE-EETTEEEE-----------GGGCCTTTC---
T ss_pred CCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEE-EECCeEEC-----------HHHHHHHhcccc
Confidence 88998655 56799999999999999999999644 454 47999999 566666666543
No 6
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.91 E-value=2.6e-25 Score=182.42 Aligned_cols=116 Identities=22% Similarity=0.517 Sum_probs=101.6
Q ss_pred CCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCCccCCCcceeecccc
Q psy12252 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAG 99 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~~~~~~~ 99 (356)
..++|.+|+++|.+++.+.++|+.||++||+|+.|+++|.+..|++++|++||+.||.++|+++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~---------------- 65 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV---------------- 65 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCB----------------
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCcc----------------
Confidence 4689999999999878889999999999999999999999889999999999999999987664
Q ss_pred cccccCCCCcccccCCceecccCcCcccCCCCCCCCCCCCcCCCCcccccccCCCCCccccccccccCCCCCCCCCCCce
Q psy12252 100 MCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCPRCGGV 179 (356)
Q Consensus 100 ~c~~~l~~~~~~~~~~~~~C~~c~~~~~~p~~~~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 179 (356)
|.+|+++
T Consensus 66 -------------------------------------------------------------------------C~~C~~~ 72 (126)
T 2xqn_T 66 -------------------------------------------------------------------------CQGCHNA 72 (126)
T ss_dssp -------------------------------------------------------------------------CTTTCSB
T ss_pred -------------------------------------------------------------------------CcccCCc
Confidence 5666777
Q ss_pred Eecc-eeeccCCCccc--ccccccccCcCcCCCCccccCCCCceecccc
Q psy12252 180 VFAA-EQVLAKGSEWH--RKCFKCRDCNKTLDSINACDGPDKDIYCKTC 225 (356)
Q Consensus 180 I~~~-~~i~a~~~~~H--~~CF~C~~C~~~l~~~~~~~~~~g~~~C~~c 225 (356)
|.++ ..|.++++.|| ++||+|..|+++|.+..|+ ..++++||..+
T Consensus 73 I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~-~~~~~~yC~~~ 120 (126)
T 2xqn_T 73 IDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM-PVEGMVFCSVE 120 (126)
T ss_dssp CCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEE-EETTEEESSHH
T ss_pred CCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeE-eECCEEcchHH
Confidence 7753 45789999999 9999999999999977665 47999999533
No 7
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.91 E-value=2.1e-25 Score=182.95 Aligned_cols=120 Identities=26% Similarity=0.577 Sum_probs=107.0
Q ss_pred CCCCCCCceEecceeeccCCCcccccccccccCcCcCCCCccccCCCCceecccccccCCcccccccccccCCCcccCCC
Q psy12252 171 KGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGYGH 250 (356)
Q Consensus 171 ~~C~~C~~~I~~~~~i~a~~~~~H~~CF~C~~C~~~l~~~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~~~~ 250 (356)
++|.+|+++|.+++.+.++|+.||++||+|..|+++|.+..|+ .++|++|| ..||.++|++
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC-----------~~cy~~~~~~------- 64 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV-MVNDKPVC-----------KPCYVKNHAV------- 64 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEE-EETTEEEE-----------HHHHHHHSCC-------
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEE-eECCEEec-----------hHHhCcCcCc-------
Confidence 5899999999988888999999999999999999999987665 48999999 7778777776
Q ss_pred CCceeecCCCCccccCCCCCCCCCCCCCCCCCCCCCceeecc-eEEEeCCcccc--cCcccccccCCCCCCCCCccCCCC
Q psy12252 251 SPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAA-EQMISKNRIWH--RRCFSCADCHRSLDSTNLNDGPDN 327 (356)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~-e~v~~~g~~~H--~~CF~C~~C~~~L~~~~~~~~~~g 327 (356)
+|++|+++|.++ ..|.++++.|| ++||+|+.|+++|.+..|+ ..+|
T Consensus 65 ------------------------------~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~-~~~~ 113 (126)
T 2xqn_T 65 ------------------------------VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM-PVEG 113 (126)
T ss_dssp ------------------------------BCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEE-EETT
T ss_pred ------------------------------cCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeE-eECC
Confidence 699999999975 45789999999 9999999999999977776 5899
Q ss_pred ccccccccccccC
Q psy12252 328 DIYCRGCYGKNFG 340 (356)
Q Consensus 328 ~~yC~~c~~~~f~ 340 (356)
++||+.+|.++|.
T Consensus 114 ~~yC~~~~~~~f~ 126 (126)
T 2xqn_T 114 MVFCSVECKKRMS 126 (126)
T ss_dssp EEESSHHHHHSCC
T ss_pred EEcchHHhhhhcC
Confidence 9999988888874
No 8
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.89 E-value=8.1e-24 Score=184.45 Aligned_cols=120 Identities=24% Similarity=0.485 Sum_probs=99.4
Q ss_pred CCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCCccCCCcceeecc
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMD 97 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~~~~~ 97 (356)
....++|..|+++|.+.+.+.++|+.||++||+|..|+++|.+.. |+++|++||+.||.++|+++
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~k-------------- 121 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTK-------------- 121 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCC--------------
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccc--------------
Confidence 345789999999999877788999999999999999999999876 48999999999999988765
Q ss_pred cccccccCCCCcccccCCceecccCcCcccCCCCCCCCCCCCcCCCCcccccccCCCCCccccccccccCCCCCCCCCCC
Q psy12252 98 AGMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCPRCG 177 (356)
Q Consensus 98 ~~~c~~~l~~~~~~~~~~~~~C~~c~~~~~~p~~~~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~ 177 (356)
|..|+
T Consensus 122 ---------------------------------------------------------------------------C~~C~ 126 (182)
T 2jtn_A 122 ---------------------------------------------------------------------------CAACQ 126 (182)
T ss_dssp ---------------------------------------------------------------------------CTTTC
T ss_pred ---------------------------------------------------------------------------cccCC
Confidence 44555
Q ss_pred ceEeccee-eccCCCcccccccccccCcCcCCCC-ccccCCCCceecccccc
Q psy12252 178 GVVFAAEQ-VLAKGSEWHRKCFKCRDCNKTLDSI-NACDGPDKDIYCKTCYG 227 (356)
Q Consensus 178 ~~I~~~~~-i~a~~~~~H~~CF~C~~C~~~l~~~-~~~~~~~g~~~C~~c~~ 227 (356)
++|.+.+. +.+.+..||++||+|..|+++|..+ .|+...++++||..||.
T Consensus 127 ~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~ 178 (182)
T 2jtn_A 127 LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178 (182)
T ss_dssp CCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHH
T ss_pred CccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHH
Confidence 66665443 4689999999999999999999854 44445789999965554
No 9
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.89 E-value=7.1e-24 Score=182.64 Aligned_cols=117 Identities=25% Similarity=0.498 Sum_probs=97.0
Q ss_pred CCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCCccCCCcceeecccc
Q psy12252 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAG 99 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~~~~~~~ 99 (356)
..+.|..|+++|.+.+.+.|+|+.||++||+|..|+++|.+.. ++++|++||+.||.++|+++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~---------------- 67 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTK---------------- 67 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCB----------------
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccccc----------------
Confidence 4689999999999877788999999999999999999999876 58999999999999988765
Q ss_pred cccccCCCCcccccCCceecccCcCcccCCCCCCCCCCCCcCCCCcccccccCCCCCccccccccccCCCCCCCCCCCce
Q psy12252 100 MCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCPRCGGV 179 (356)
Q Consensus 100 ~c~~~l~~~~~~~~~~~~~C~~c~~~~~~p~~~~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 179 (356)
|.+|+++
T Consensus 68 -------------------------------------------------------------------------C~~C~~~ 74 (169)
T 2rgt_A 68 -------------------------------------------------------------------------CAACQLG 74 (169)
T ss_dssp -------------------------------------------------------------------------CTTTCCB
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 5556666
Q ss_pred Eeccee-eccCCCcccccccccccCcCcCCCC-ccccCCCCceeccccc
Q psy12252 180 VFAAEQ-VLAKGSEWHRKCFKCRDCNKTLDSI-NACDGPDKDIYCKTCY 226 (356)
Q Consensus 180 I~~~~~-i~a~~~~~H~~CF~C~~C~~~l~~~-~~~~~~~g~~~C~~c~ 226 (356)
|.+.+. +.+++..||.+||+|..|+++|..+ .|+...++++||..||
T Consensus 75 I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~ 123 (169)
T 2rgt_A 75 IPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 123 (169)
T ss_dssp CCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHH
T ss_pred cCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHH
Confidence 665554 4789999999999999999999854 4444578999994444
No 10
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.88 E-value=4.1e-24 Score=184.09 Aligned_cols=124 Identities=24% Similarity=0.565 Sum_probs=107.6
Q ss_pred CCCCCCCCceEecceeeccCCCcccccccccccCcCcCCCCccccCCCCceecccccccCCcccccccccccCCCcccCC
Q psy12252 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGYG 249 (356)
Q Consensus 170 ~~~C~~C~~~I~~~~~i~a~~~~~H~~CF~C~~C~~~l~~~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~~~ 249 (356)
..+|.+|+++|.+.+++.|+++.||.+||+|..|+++|.+..| .++|++|| ..||.++|++
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f--~~~g~~yC-----------~~~y~~~f~~------ 66 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYC-----------KDDFFKRFGT------ 66 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE--ESSSCEEC-----------HHHHHHHHSC------
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc--ccCCeeee-----------cccccccccc------
Confidence 3689999999998777889999999999999999999998765 48999999 7788888876
Q ss_pred CCCceeecCCCCccccCCCCCCCCCCCCCCCCCCCCCceeecceEE-EeCCcccccCcccccccCCCCCCCC-CccCCCC
Q psy12252 250 HSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAAEQM-ISKNRIWHRRCFSCADCHRSLDSTN-LNDGPDN 327 (356)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~e~v-~~~g~~~H~~CF~C~~C~~~L~~~~-~~~~~~g 327 (356)
+|++|+++|.+++.+ .+.++.||++||+|+.|+++|..+. |+...+|
T Consensus 67 -------------------------------~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g 115 (169)
T 2rgt_A 67 -------------------------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 115 (169)
T ss_dssp -------------------------------BCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTS
T ss_pred -------------------------------cccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCC
Confidence 699999999987765 6999999999999999999998654 5445789
Q ss_pred ccccccccccccCCCc
Q psy12252 328 DIYCRGCYGKNFGPKG 343 (356)
Q Consensus 328 ~~yC~~c~~~~f~~~~ 343 (356)
++||+.||.++++...
T Consensus 116 ~~~C~~c~~~~~~~~~ 131 (169)
T 2rgt_A 116 RLVCKADYETAKQGGS 131 (169)
T ss_dssp CEEEHHHHHHHHHCC-
T ss_pred eEECHHHHHHHhhccC
Confidence 9999999999987654
No 11
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.88 E-value=1.5e-23 Score=182.81 Aligned_cols=120 Identities=25% Similarity=0.592 Sum_probs=104.6
Q ss_pred CCCCCCCCCceEecceeeccCCCcccccccccccCcCcCCCCccccCCCCceecccccccCCcccccccccccCCCcccC
Q psy12252 169 PGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGY 248 (356)
Q Consensus 169 ~~~~C~~C~~~I~~~~~i~a~~~~~H~~CF~C~~C~~~l~~~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~~ 248 (356)
..++|.+|+++|.+.+.+.++++.||++||+|..|+++|....| .++|++|| ..||.++|++
T Consensus 59 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f--~~~g~~yC-----------~~~y~~~f~~----- 120 (182)
T 2jtn_A 59 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYC-----------KDDFFKRFGT----- 120 (182)
T ss_dssp SCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE--EETTEEEC-----------HHHHHHTTSC-----
T ss_pred CCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce--eECCEeee-----------cCcccccccc-----
Confidence 34689999999998777889999999999999999999998765 38999999 7788888876
Q ss_pred CCCCceeecCCCCccccCCCCCCCCCCCCCCCCCCCCCceeecceE-EEeCCcccccCcccccccCCCCCCCC-CccCCC
Q psy12252 249 GHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAAEQ-MISKNRIWHRRCFSCADCHRSLDSTN-LNDGPD 326 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~L~~~~-~~~~~~ 326 (356)
+|.+|+++|.+.+. +.+.++.||++||+|..|+++|..+. |+...+
T Consensus 121 --------------------------------kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~ 168 (182)
T 2jtn_A 121 --------------------------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMED 168 (182)
T ss_dssp --------------------------------CCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTT
T ss_pred --------------------------------ccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccC
Confidence 79999999997665 47999999999999999999998654 444578
Q ss_pred Cccccccccccc
Q psy12252 327 NDIYCRGCYGKN 338 (356)
Q Consensus 327 g~~yC~~c~~~~ 338 (356)
|++||+.||.++
T Consensus 169 g~~yC~~cy~~~ 180 (182)
T 2jtn_A 169 SRLVCKADYETA 180 (182)
T ss_dssp SCEECHHHHHHH
T ss_pred CEEECHHHHHHh
Confidence 999999999875
No 12
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.86 E-value=2.3e-22 Score=158.31 Aligned_cols=66 Identities=24% Similarity=0.597 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCcccc-ceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCC
Q psy12252 18 PAENPKCPACGKSVYA-AEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPK 83 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~-~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~ 83 (356)
++..++|..|+++|.. ++.+.++|+.||++||+|..|+++|.+..|++++|++||+.||.++|+++
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~ 68 (101)
T 2cup_A 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPK 68 (101)
T ss_dssp CSCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCB
T ss_pred CCCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCc
Confidence 3567899999999984 67888999999999999999999999889999999999999999877664
No 13
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.82 E-value=4.4e-21 Score=150.92 Aligned_cols=95 Identities=28% Similarity=0.673 Sum_probs=83.9
Q ss_pred CCCCCCCCceEec-ceeeccCCCcccccccccccCcCcCCCCccccCCCCceecccccccCCcccccccccccCCCcccC
Q psy12252 170 GKGCPRCGGVVFA-AEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGY 248 (356)
Q Consensus 170 ~~~C~~C~~~I~~-~~~i~a~~~~~H~~CF~C~~C~~~l~~~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~~ 248 (356)
..+|.+|+++|.. ++.|.++++.||.+||+|..|+++|.+..|+ .+++++|| ..||.++|++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC-----------~~cy~~~~~~----- 67 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFV-AKDNKILC-----------NKCTTREDSP----- 67 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCE-EETTEEEC-----------HHHHTTCCCC-----
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeE-CcCCEEEC-----------hhHhhhhcCC-----
Confidence 3689999999984 6788999999999999999999999877665 48999999 7778777776
Q ss_pred CCCCceeecCCCCccccCCCCCCCCCCCCCCCCCCCCCceeecce-EEEeCCcccccCcccccccC
Q psy12252 249 GHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAAE-QMISKNRIWHRRCFSCADCH 313 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~ 313 (356)
+|++|+++|.+++ .|.++|+.||++||+|+.|+
T Consensus 68 --------------------------------~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 68 --------------------------------KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp --------------------------------BCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred --------------------------------ccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 6999999999765 57899999999999999985
No 14
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=6.9e-19 Score=143.18 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=92.7
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCccccccccccc--CCCccccCCcccCccccccccCC--CCCccCCCccee
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLD--STNCTEHEKELYCRQCHGRKYGP--KGYGFGGGAGCL 94 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~--~c~~c~~~~~~~ 94 (356)
+..++|.+|+++|.+.+.+.++++.||++||+|+.|+++|. +..|++++|++||..||.++|++ +|.+|.+++...
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 45789999999999877788999999999999999999997 35799999999999999999999 999999865422
Q ss_pred ecccccccccCCCCcccccCCceecccCcCcccCC
Q psy12252 95 SMDAGMCSKFLDSTNCTEHEKELYCRQCHGRKYGP 129 (356)
Q Consensus 95 ~~~~~~c~~~l~~~~~~~~~~~~~C~~c~~~~~~p 129 (356)
... ..=+..|.|+.|+..++.+||..++...+..
T Consensus 83 ~~~-~~g~~~l~g~~f~~~~~~~yC~~~~~~~~~~ 116 (122)
T 1m3v_A 83 DVM-VVGEPTLMGGEFGDEDERLITRLENTQFDAA 116 (122)
T ss_dssp ESS-SSSSSSCCSCTTCCTTCCCCEECTTTTTTCC
T ss_pred heE-EcCCcCCCCCccEecCCEeEccCcchhchhh
Confidence 111 1113468899999999999999999876643
No 15
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.9e-18 Score=137.83 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=88.4
Q ss_pred CCCCCCCCCccccceEEEeCCceeccCCcccccccccccC--CCccccCCcccCccccccccCCCCCccCCCcceeeccc
Q psy12252 21 NPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDS--TNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDA 98 (356)
Q Consensus 21 ~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~~~~~~ 98 (356)
.++|.+|+++|.+.+.+.++++.||++||+|+.|+++|.+ ..|++++|++||+.||.++|+++|..|..+.. +
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~~~---~-- 77 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDV---M-- 77 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSCSC---C--
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCCce---e--
Confidence 5789999999998778999999999999999999999985 58999999999999999999999987764221 1
Q ss_pred ccccc-cCCCCcccccCCceecccCcCcccCC
Q psy12252 99 GMCSK-FLDSTNCTEHEKELYCRQCHGRKYGP 129 (356)
Q Consensus 99 ~~c~~-~l~~~~~~~~~~~~~C~~c~~~~~~p 129 (356)
.|.. .|.++.|...++.+||..|+....+.
T Consensus 78 -~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~ 108 (114)
T 1j2o_A 78 -VVGEPTLMGGEFGDEDERLITRLENTQFDAA 108 (114)
T ss_dssp -CSSCSSTTSSBCCCSSSCCCEEEECTTCCCT
T ss_pred -EcCCccCCCCeeEEcCCEeecchhhhccccc
Confidence 2444 47788999999999999999876654
No 16
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.72 E-value=1.5e-18 Score=130.79 Aligned_cols=79 Identities=53% Similarity=1.090 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCCccCCCcce
Q psy12252 14 MPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGC 93 (356)
Q Consensus 14 ~~~~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~ 93 (356)
||+ ....++|..|+++|..++.+.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|.+|++++|.
T Consensus 1 m~~-~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~~~ 79 (81)
T 1a7i_A 1 MPN-WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGT 79 (81)
T ss_dssp --------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC------------
T ss_pred CCC-CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcccc
Confidence 565 3467899999999987788999999999999999999999999899999999999999999999999999987654
No 17
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.72 E-value=9.6e-19 Score=131.88 Aligned_cols=74 Identities=47% Similarity=1.068 Sum_probs=56.8
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccccCCCCCccc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCGFGLGAGALT 354 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~~~~~~~~~~ 354 (356)
.+|++|+++|.+++.|.+.++.||++||+|+.|+++|..+.|+ ..++++||+.||.++|+++|.+++.++|+|.
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~gcg~g~~~~~ 81 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVA-IHDAEVYCKSCYGKKYGPKGYGYGQGAGTLN 81 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCE-EETTEEECSHHHHHHCC--------------
T ss_pred CcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeE-eeCCEEECHHHHHHHhCCcccccCCcccccC
Confidence 4899999999888999999999999999999999999998877 5899999999999999999999999999873
No 18
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=4.3e-18 Score=127.92 Aligned_cols=63 Identities=24% Similarity=0.595 Sum_probs=58.8
Q ss_pred CCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 281 GCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
+|++|+++|.+ +.|.++++.||++||+|+.|+++|.++.|+ ..+++|||+.||.++||++|.+
T Consensus 17 ~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 17 KCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFF-ELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp BCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCCE-ESSSCEECHHHHHHHHSSSCCC
T ss_pred ccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcEE-eECCEEECHHHHHHHcCCCCCC
Confidence 79999999985 788999999999999999999999998877 5999999999999999999974
No 19
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-18 Score=129.15 Aligned_cols=64 Identities=25% Similarity=0.718 Sum_probs=57.7
Q ss_pred CCCCCCceeec-ceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 281 GCPRCGFVVYA-AEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 281 ~C~~C~~~I~~-~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
+|++|+++|.+ +..|.++++.||++||+|+.|+++|.++.|+ ..+++|||+.||.++|+++|..
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFT-CQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp BCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEE-EETTEEEETTTSSCCGGGSSCC
T ss_pred cCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccE-eeCCEEECHHHHhhhcCCCCCC
Confidence 79999999995 4556789999999999999999999988876 5999999999999999999863
No 20
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=8.1e-18 Score=126.76 Aligned_cols=64 Identities=22% Similarity=0.576 Sum_probs=57.6
Q ss_pred CCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 281 GCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
+|++|+++|. ++.|.++++.||++||+|+.|+++|.+..|+...+|+|||+.||.++||++|.+
T Consensus 17 ~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 17 KCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp BCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred ccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 7999999998 578899999999999999999999998877643378999999999999999874
No 21
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=8.7e-18 Score=126.23 Aligned_cols=63 Identities=27% Similarity=0.779 Sum_probs=58.1
Q ss_pred CCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 281 GCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
+|++|+++|.+ +.|.++++.||++||+|+.|+++|.++.|+ ..++++||+.||.++|+++|.+
T Consensus 17 ~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 17 RCARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAGQQFT-SRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCTTTCCCCCS-CCEESSSSEECTTTCBCSSSCCBCTTCCEE-ECSSSEEEHHHHHHHTTCSTTC
T ss_pred cCCCCCCEecC-cEEEECCchhhhhhCCcccCCCcCCCCeeE-eECCEEECHHHHHHHcCCCCCC
Confidence 79999999985 688999999999999999999999888776 5999999999999999999863
No 22
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3.8e-18 Score=138.78 Aligned_cols=113 Identities=21% Similarity=0.387 Sum_probs=92.7
Q ss_pred CCCCCCCCceEecceeeccCCCcccccccccccCcCcCCC--CccccCCCCceecccccccCCcccccccccccCCCccc
Q psy12252 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS--INACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFG 247 (356)
Q Consensus 170 ~~~C~~C~~~I~~~~~i~a~~~~~H~~CF~C~~C~~~l~~--~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~ 247 (356)
.++|.+|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+ .+++++|| ..||.++|+++
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC-----------~~cy~~~f~~~--- 69 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILC-----------RNDYIRLFGNS--- 69 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCE-EETTEEEC-----------HHHHHHHHCCC---
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEE-EECCeeec-----------HHHHHHHcCCC---
Confidence 4689999999998877899999999999999999999973 3444 58999999 77888888763
Q ss_pred CCCCCceeecCCCCccccCCCCCCCCCCCCCCCCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCC
Q psy12252 248 YGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDN 327 (356)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g 327 (356)
.+|++|+++|.++ .+++.|+ ..|.++.|+ ..++
T Consensus 70 --------------------------------~~C~~C~~~I~~~-~~~~~g~-------------~~l~g~~f~-~~~~ 102 (122)
T 1m3v_A 70 --------------------------------GAGGSGGHMGSGG-DVMVVGE-------------PTLMGGEFG-DEDE 102 (122)
T ss_dssp --------------------------------CSSSCSSCCSCCE-ESSSSSS-------------SSCCSCTTC-CTTC
T ss_pred --------------------------------CccccCCCCcCch-heEEcCC-------------cCCCCCccE-ecCC
Confidence 1699999999864 3455553 467777776 6999
Q ss_pred ccccccccccccCCCcc
Q psy12252 328 DIYCRGCYGKNFGPKGC 344 (356)
Q Consensus 328 ~~yC~~c~~~~f~~~~~ 344 (356)
+|||+.||.+++..++.
T Consensus 103 ~~yC~~~~~~~~~~~g~ 119 (122)
T 1m3v_A 103 RLITRLENTQFDAANGI 119 (122)
T ss_dssp CCCEECTTTTTTCCSCC
T ss_pred EeEccCcchhchhhcCC
Confidence 99999999999887764
No 23
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.1e-17 Score=126.19 Aligned_cols=64 Identities=25% Similarity=0.701 Sum_probs=58.7
Q ss_pred CCCCCCceeecceE-EEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 281 GCPRCGFVVYAAEQ-MISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 281 ~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
+|++|+++|.+++. |.++++.||++||+|+.|+++|..+.|+ ..++++||+.||.++|++++.+
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFF-PKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEE-EETTEEEEHHHHHHHTSCCCSC
T ss_pred cCccCCcccccCceEEEECccccccccCchhhCCCccCCCccE-eeCCEEECHHHHHHHhCCCCCC
Confidence 79999999997664 7899999999999999999999998877 5899999999999999999863
No 24
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.1e-16 Score=120.16 Aligned_cols=72 Identities=21% Similarity=0.450 Sum_probs=65.2
Q ss_pred cCCCCCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 13 IMPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 13 ~~~~~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
.+|......++|..|+++|..++.+.++++.||++||+|..|+++|.+ .|+++++++||+.||.++|+++|.
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp CCCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCC
Confidence 355556678899999999997788999999999999999999999985 699999999999999999999975
No 25
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=5.6e-17 Score=122.09 Aligned_cols=64 Identities=19% Similarity=0.541 Sum_probs=56.5
Q ss_pred CCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCcc-CCCCccccccccccccCCCccc
Q psy12252 281 GCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLND-GPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~-~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
+|++|+++|. ++.|.++++.||++||+|+.|+++|..+..+. ..+++|||+.||.++|++.+.|
T Consensus 17 ~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 17 FCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp BCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred cCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 6999999999 67888999999999999999999997654443 4799999999999999998753
No 26
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1e-16 Score=119.19 Aligned_cols=69 Identities=46% Similarity=0.982 Sum_probs=64.9
Q ss_pred CCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCc-cccccccCCCCCccCCC
Q psy12252 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCR-QCHGRKYGPKGYGFGGG 90 (356)
Q Consensus 22 ~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~~~c~~c~~~ 90 (356)
++|.+|+++|..++.+.++|+.||++||+|..|+++|.+..|++++|++||. .||.++|+++|.+|++.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~ 70 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGA 70 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCc
Confidence 5799999999977889999999999999999999999998999999999999 69999999999999864
No 27
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.6e-16 Score=118.03 Aligned_cols=66 Identities=41% Similarity=0.936 Sum_probs=62.2
Q ss_pred CCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccc-cccccccCCCccccC
Q psy12252 281 GCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCR-GCYGKNFGPKGCGFG 347 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~-~c~~~~f~~~~~~~~ 347 (356)
+|++|+++|.+++.|.++|+.||++||+|+.|+++|.++.|+ ..+|++||+ .||.++|+++|.+++
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~cy~~~f~~~C~~C~ 68 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA-EHEGKPYCNHPCYSAMFGPKGFGRG 68 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEE-EETTEEEETTTHHHHHSSCCCSSCC
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceE-CcCCeEeeCHHHHHHHhCccCCCcC
Confidence 699999999988999999999999999999999999998877 599999999 699999999999887
No 28
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=3.7e-16 Score=116.14 Aligned_cols=69 Identities=23% Similarity=0.458 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCcccc---ceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCCcc
Q psy12252 19 AENPKCPACGKSVYA---AEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGF 87 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~---~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~~c 87 (356)
...++|.+|+++|.+ .+.+.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|..+
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~ 74 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPS 74 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSS
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCC
Confidence 456899999999994 468889999999999999999999998899999999999999999999998765
No 29
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.7e-16 Score=117.96 Aligned_cols=65 Identities=31% Similarity=0.779 Sum_probs=60.8
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccc-cccccccCCCccc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCR-GCYGKNFGPKGCG 345 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~-~c~~~~f~~~~~~ 345 (356)
.+|++|+++|.+++.|.++++.||++||+|+.|+++|.++.|+ ..+++|||+ .||.++|+++|.+
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA-EHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCE-EETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceE-eECCEEecchHHHHHhcccccCC
Confidence 4899999999988999999999999999999999999988877 599999999 7999999999975
No 30
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.8e-16 Score=116.81 Aligned_cols=68 Identities=35% Similarity=0.749 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCc-cccccccCCCCCc
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCR-QCHGRKYGPKGYG 86 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~~~c~~ 86 (356)
...++|..|+++|..++.+.++++.||++||+|..|+++|.+..|+++++++||. .||.++|+++|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 4678999999999977889999999999999999999999988999999999999 7999999999863
No 31
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.5e-16 Score=120.46 Aligned_cols=73 Identities=29% Similarity=0.606 Sum_probs=68.1
Q ss_pred cCCCCCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 13 IMPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 13 ~~~~~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
.|++.+...+.|..|+++|.+.+.+.++++.||++||+|..|+++|.+..|+++++++||+.||.++|+++|.
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp SSCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred CCccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC
Confidence 4667777889999999999987888999999999999999999999998899999999999999999999986
No 32
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.8e-16 Score=117.27 Aligned_cols=65 Identities=23% Similarity=0.594 Sum_probs=59.6
Q ss_pred CCCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 279 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
..+|++|+++|.+++.|.++++.||++||+|+.|+++|.+ .|+ .+|++|||+.||.++||++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~-~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYI-SKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCE-EETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeE-EECCEEECHHHHHHHcCCCCCC
Confidence 3489999999998899999999999999999999999985 565 5999999999999999999975
No 33
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=118.72 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=70.8
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccc-ceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 8 KKLDIIMPFVPAENPKCPACGKSVYA-AEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~C~~C~~~I~~-~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
++++...+|.....++|..|+++|.. +..+.++++.||++||+|+.|+++|.+..|+.+++++||..||.++|+++|.
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 46777888888899999999999994 4566789999999999999999999988999999999999999999999885
No 34
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.7e-16 Score=117.27 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=70.7
Q ss_pred ccccccCCCCCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 8 KKLDIIMPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
++++...+|.....++|.+|+++|.+ +.+.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|.
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPS 78 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCC
T ss_pred CCccchhHHhhhcCCccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCC
Confidence 45677778888888999999999996 678899999999999999999999988999999999999999999999985
No 35
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=3.3e-16 Score=114.14 Aligned_cols=67 Identities=24% Similarity=0.472 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
++..++|..|+++|.+ +.+.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|.
T Consensus 2 s~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 2 SSGSSGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCCCCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred CCCcCCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 3567899999999986 678899999999999999999999988999999999999999999999985
No 36
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4e-16 Score=116.16 Aligned_cols=57 Identities=23% Similarity=0.622 Sum_probs=51.7
Q ss_pred CCCCCCceeec----ceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccc
Q psy12252 281 GCPRCGFVVYA----AEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKN 338 (356)
Q Consensus 281 ~C~~C~~~I~~----~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~ 338 (356)
+|++|+++|.+ .+.|.++++.||++||+|+.|+++|.++.|+ ..+|+|||+.||.++
T Consensus 17 ~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFV-FHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCC-EETTEECCHHHHHHC
T ss_pred cCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccE-eECCEEEChHHhccC
Confidence 79999999994 3778899999999999999999999988887 599999999999764
No 37
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7e-16 Score=112.66 Aligned_cols=66 Identities=24% Similarity=0.517 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
+..++|..|+++|.+ +.+.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|.
T Consensus 3 ~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 3 SGSSGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CCCCBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCCCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccC
Confidence 467899999999986 568899999999999999999999988999999999999999999999985
No 38
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=5e-16 Score=124.67 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=82.0
Q ss_pred CCCCCCCceEecceeeccCCCcccccccccccCcCcCCC--CccccCCCCceecccccccCCcccccccccccCCCcccC
Q psy12252 171 KGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDS--INACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGY 248 (356)
Q Consensus 171 ~~C~~C~~~I~~~~~i~a~~~~~H~~CF~C~~C~~~l~~--~~~~~~~~g~~~C~~c~~~~~~~C~~c~~~~~~~~~~~~ 248 (356)
++|.+|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+ .+++++|| ..||.++|++
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC-----------~~~y~~~f~~----- 66 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLC-----------RRDYLRLGGS----- 66 (114)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCC-CBTTBCCC-----------HHHHHHHHTS-----
T ss_pred CCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeE-EECCeeec-----------hHHHHHHhCc-----
Confidence 589999999998878899999999999999999999985 3454 58999999 7888888887
Q ss_pred CCCCceeecCCCCccccCCCCCCCCCCCCCCCCCCCCCceeecceEEEeCCcccccCcccccccCCC-CCCCCCccCCCC
Q psy12252 249 GHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRS-LDSTNLNDGPDN 327 (356)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~-L~~~~~~~~~~g 327 (356)
+|..|.. ++.|. |..+ |.++.|+ ..++
T Consensus 67 --------------------------------~c~~c~~----~~~~~---------------~~~~~~~g~~f~-~~~~ 94 (114)
T 1j2o_A 67 --------------------------------GGHMGSG----GDVMV---------------VGEPTLMGGEFG-DEDE 94 (114)
T ss_dssp --------------------------------CCSSCBS----CSCCC---------------SSCSSTTSSBCC-CSSS
T ss_pred --------------------------------ccCcCCC----CceeE---------------cCCccCCCCeeE-EcCC
Confidence 4555531 12111 3344 5555665 6999
Q ss_pred ccccccccccccCCCcc
Q psy12252 328 DIYCRGCYGKNFGPKGC 344 (356)
Q Consensus 328 ~~yC~~c~~~~f~~~~~ 344 (356)
+|||+.||.++.++.+.
T Consensus 95 ~~~C~~~~~~~~~~~g~ 111 (114)
T 1j2o_A 95 RLITRLENTQFDAANGI 111 (114)
T ss_dssp CCCEEEECTTCCCTTSS
T ss_pred EeecchhhhccccccCC
Confidence 99999999999887654
No 39
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=4.7e-16 Score=113.32 Aligned_cols=64 Identities=23% Similarity=0.746 Sum_probs=59.1
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
.+|++|+++|. ++.|.++++.||++||+|+.|+++|.+..|+ ..++++||+.||.++||++|.|
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 6 SGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFT-AVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEE-ECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccE-eECCEEECHHHhHHHhcCCCCC
Confidence 48999999998 4788999999999999999999999988776 5999999999999999999975
No 40
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.4e-16 Score=113.17 Aligned_cols=67 Identities=16% Similarity=0.514 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCccccc-eEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 19 AENPKCPACGKSVYAA-EERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~-~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
+..++|..|+++|... ..+.++|+.||++||+|..|+++|.+..|+++++++||+.||.++|+++|.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 4568999999999986 478899999999999999999999999999999999999999999999975
No 41
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.7e-15 Score=116.50 Aligned_cols=65 Identities=26% Similarity=0.699 Sum_probs=60.7
Q ss_pred CCCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCcc
Q psy12252 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGC 344 (356)
Q Consensus 279 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~ 344 (356)
..+|++|+++|.+++.|.++++.||++||+|+.|+++|..+.|+ ..++++||+.||.++|+++|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA-SLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCC-CSSSCCCCHHHHHHHSCCCSC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcE-eECCEEECHHHHHHHhCCCcC
Confidence 35899999999988899999999999999999999999998877 599999999999999999985
No 42
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=6.4e-16 Score=113.49 Aligned_cols=67 Identities=28% Similarity=0.631 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCccccc-eEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 19 AENPKCPACGKSVYAA-EERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~-~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
...++|..|+++|..+ +.+.++|+.||++||+|..|+++|.+..|+++++++||+.||.++|+++|.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 4568999999999975 677899999999999999999999998999999999999999999999985
No 43
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=7.5e-16 Score=112.51 Aligned_cols=64 Identities=22% Similarity=0.704 Sum_probs=59.0
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
.+|++|+++|. ++.|.++++.||++||+|+.|+++|.++.|+ ..++++||+.||.++|+++|.+
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFT-ARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCE-ESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceE-eeCCeEECHHHHHHHhccccCC
Confidence 47999999998 4778999999999999999999999988887 5899999999999999999974
No 44
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.2e-15 Score=114.53 Aligned_cols=77 Identities=18% Similarity=0.421 Sum_probs=70.1
Q ss_pred ccccccCCCCCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 8 KKLDIIMPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
++++....+.....++|..|+++|.+ +.+.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCCS-CCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred CcEEcHHHHccccCCcCCCCCCEecC-cEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 35667777888888999999999986 578899999999999999999999888999999999999999999999875
No 45
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.2e-15 Score=113.30 Aligned_cols=66 Identities=23% Similarity=0.538 Sum_probs=60.1
Q ss_pred CCCCCCCceeec---ceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCcccc
Q psy12252 280 DGCPRCGFVVYA---AEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCGF 346 (356)
Q Consensus 280 ~~C~~C~~~I~~---~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~~ 346 (356)
.+|++|+++|.+ .+.|.++++.||++||+|+.|+++|.+..|+ ..+++|||+.||.++|+++|...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~f~~~C~~~ 74 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFL-TQNKEIFCQKCGSGMDTDISGPS 74 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEE-EETTEEEETTTTCCCCCCSSSSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceE-eECCEEECHHHhhhhhCCcCCCC
Confidence 389999999994 4778899999999999999999999988777 59999999999999999999764
No 46
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.4e-15 Score=116.72 Aligned_cols=68 Identities=22% Similarity=0.482 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 17 VPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 17 ~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
.....++|..|+++|. ++.+.++|+.||++||+|..|+++|.+..|+++++++||..||.++|+++|.
T Consensus 21 ~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 21 AGKRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp TTTCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred CCCCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 3467789999999997 5788899999999999999999999988999999999999999999999975
No 47
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.4e-15 Score=114.46 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=67.7
Q ss_pred ccccccCCCCCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCcccc-CCcccCccccccccCCCCC
Q psy12252 8 KKLDIIMPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEH-EKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~~~c~ 85 (356)
++++....|. ...++|..|+++|.+ +.+.++++.||++||+|..|+++|.+..|+.. +|++||..||.++|+++|.
T Consensus 3 g~~yC~~~y~-~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~ 79 (81)
T 2dlo_A 3 SGSSGEGCYV-ATLEKCATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPS 79 (81)
T ss_dssp CCCCCCCCCC-SSCCBCTTTCCBCCS-CCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSC
T ss_pred CCEECHHHhh-cCCCccccCCCeecc-eeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCC
Confidence 4666777777 688999999999995 68889999999999999999999998888776 7999999999999999985
No 48
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.57 E-value=6.1e-16 Score=111.67 Aligned_cols=64 Identities=23% Similarity=0.422 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCC
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPK 83 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~ 83 (356)
...++|+.|+++|. ++.+.++|+.||++||+|..|+++|.+..|++++|++||..||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 35689999999999 57888999999999999999999999989999999999999999999874
No 49
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=9.7e-16 Score=114.04 Aligned_cols=68 Identities=22% Similarity=0.422 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCccccce-EEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 18 PAENPKCPACGKSVYAAE-ERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~-~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
....++|.+|+++|..++ .+.++|+.||++||+|..|+++|.++.|++++|++||+.||.++|+++|.
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 356789999999998644 56799999999999999999999998999999999999999999999874
No 50
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.3e-15 Score=114.88 Aligned_cols=77 Identities=25% Similarity=0.524 Sum_probs=69.4
Q ss_pred cccccCCCCCCCCCCCCCCCCccccce-EEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 9 KLDIIMPFVPAENPKCPACGKSVYAAE-ERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 9 ~~~~~~~~~~~~~~~C~~C~~~I~~~~-~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
+++....+.....++|..|+++|..++ .+.++++.||++||+|..|+++|.+..|+++++++||+.||.++|++++.
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 3 SGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp SCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 456677788888899999999999755 57899999999999999999999999999999999999999999999864
No 51
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.3e-15 Score=111.84 Aligned_cols=66 Identities=20% Similarity=0.508 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCcccc---ceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCC
Q psy12252 19 AENPKCPACGKSVYA---AEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKG 84 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~---~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c 84 (356)
+..++|.+|+++|.+ .+.+.++|+.||++||+|..|+++|.+..|+++++++||..||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 467899999999996 357889999999999999999999998899999999999999999998863
No 52
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=8e-16 Score=112.97 Aligned_cols=65 Identities=28% Similarity=0.746 Sum_probs=59.5
Q ss_pred CCCCCCCceeecc-eEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 280 DGCPRCGFVVYAA-EQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 280 ~~C~~C~~~I~~~-e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
.+|++|+++|.++ +.|.++++.||++||+|+.|+++|.++.|+ ..++++||+.||.++|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFV-PDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEE-EETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccC-CcCCeEECHHHHHHHccCcCCC
Confidence 3799999999975 667899999999999999999999998877 5899999999999999999974
No 53
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.56 E-value=6.6e-16 Score=111.50 Aligned_cols=61 Identities=21% Similarity=0.474 Sum_probs=57.0
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCC
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPK 342 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~ 342 (356)
.+|++|+++|. ++.|.++|+.||++||+|+.|+++|.++.|+ ..+|++||+.||.++||+|
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHY-ERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCE-EETTEEECHHHHHHHCSCC
T ss_pred CCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceE-eECCcEECHHHHHHHhCCC
Confidence 37999999999 7888999999999999999999999988887 5999999999999999986
No 54
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.3e-15 Score=115.56 Aligned_cols=65 Identities=23% Similarity=0.613 Sum_probs=59.8
Q ss_pred CCCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 279 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
..+|++|+++|. ++.|.++++.||++||+|..|+++|.+..|+ ..++++||+.||.++|+++|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFV-EEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBE-ESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeE-eECCEEECHHHHHHHcCCCCCC
Confidence 358999999996 6889999999999999999999999988877 5999999999999999999863
No 55
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=1e-15 Score=114.61 Aligned_cols=64 Identities=22% Similarity=0.500 Sum_probs=58.7
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
.+|++|+++|.+ +.|.++++.||++||+|..|+++|....|+ ..++++||+.||.++|++++.|
T Consensus 16 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~p~g~g 79 (79)
T 1x62_A 16 PMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHF-FVEDQIYCEKHARERVSGPSSG 79 (79)
T ss_dssp CCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCE-ESSSCEECHHHHHHHHSSCCCC
T ss_pred CccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeE-eECCEEECHHHHHHHhCCCCCC
Confidence 489999999984 788999999999999999999999887777 5999999999999999999754
No 56
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.5e-15 Score=114.27 Aligned_cols=66 Identities=21% Similarity=0.495 Sum_probs=59.8
Q ss_pred CCCCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 278 NGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 278 ~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
...+|++|+++|.+ +.|.++++.||++||+|..|+++|..+.|+ ..++++||+.||.++|++|+.|
T Consensus 24 ~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~p~~~g 89 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYF-FVEGELYCETHARARTSGPSSG 89 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCE-EETTEEECHHHHHHHSSSCCCC
T ss_pred cCCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeE-eECCEEECHHHHHHHhCCCCCC
Confidence 34589999999994 788999999999999999999999998887 5899999999999999999864
No 57
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=1.6e-15 Score=111.36 Aligned_cols=65 Identities=26% Similarity=0.705 Sum_probs=59.5
Q ss_pred CCCCCCCceeecce-EEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCccc
Q psy12252 280 DGCPRCGFVVYAAE-QMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345 (356)
Q Consensus 280 ~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~~ 345 (356)
.+|++|+++|.+++ .|.++|+.||++||+|+.|+++|.++.|+ ..++++||+.||.++|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFI-PKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEE-EETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccC-ccCCeEECHHHHhHHhCCCCCC
Confidence 38999999999864 67899999999999999999999998877 5999999999999999999864
No 58
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=1.6e-15 Score=113.56 Aligned_cols=67 Identities=18% Similarity=0.391 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
+...++|..|+++|.+ +.+.++++.||++||+|..|+++|.+..|+++++++||..||.++|++++.
T Consensus 12 ~~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 3457899999999997 688899999999999999999999888899999999999999999999853
No 59
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.5e-15 Score=108.98 Aligned_cols=64 Identities=23% Similarity=0.620 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCC
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPK 83 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~ 83 (356)
...++|..|+++|.+ +.+.++++.||++||+|..|+++|.+..|+.+++++||..||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CCSSBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCCCcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 456899999999995 7788999999999999999999999999999999999999999999876
No 60
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.7e-15 Score=114.16 Aligned_cols=66 Identities=24% Similarity=0.409 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCC
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~ 85 (356)
...++|..|+++|.+ +.+.++++.||++||+|..|+++|.+..|+++++++||..||.++|++++.
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CcCCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 456789999999996 778899999999999999999999988899999999999999999999864
No 61
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=5.9e-15 Score=111.26 Aligned_cols=66 Identities=26% Similarity=0.571 Sum_probs=58.8
Q ss_pred CCCCCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCcc-CCCCccccccccccccCCC
Q psy12252 277 RNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLND-GPDNDIYCRGCYGKNFGPK 342 (356)
Q Consensus 277 ~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~-~~~g~~yC~~c~~~~f~~~ 342 (356)
+...+|++|+++|+++|.|.++++.||++||+|+.|+++|..+.|+. ..||++||+.||.++|+.-
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 34468999999999888899999999999999999999999998763 4799999999999999863
No 62
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.9e-15 Score=109.33 Aligned_cols=63 Identities=29% Similarity=0.672 Sum_probs=57.1
Q ss_pred CCCCCCCceeec---ceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCc
Q psy12252 280 DGCPRCGFVVYA---AEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKG 343 (356)
Q Consensus 280 ~~C~~C~~~I~~---~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~ 343 (356)
.+|++|+++|.+ .+.|.++++.||++||+|+.|+++|.+..|+ ..+++|||+.||.++||+++
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFL-TERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCE-ECSSSEECHHHHHTCCCSSC
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccE-eECCEEEChhHcCcccCCCC
Confidence 489999999995 3667899999999999999999999988877 59999999999999999974
No 63
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.3e-15 Score=109.27 Aligned_cols=71 Identities=21% Similarity=0.480 Sum_probs=63.9
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccc----ceEEEeCCceeccCCcccccccccccCCCccccCCcccCcccccc
Q psy12252 8 KKLDIIMPFVPAENPKCPACGKSVYA----AEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGR 78 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~C~~C~~~I~~----~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 78 (356)
++++....|.....++|++|+++|.+ .+.+.++++.||++||+|..|+++|.+..|+++++++||..||.+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 35667777888889999999999994 468889999999999999999999998899999999999999975
No 64
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=2.5e-15 Score=111.82 Aligned_cols=64 Identities=25% Similarity=0.526 Sum_probs=57.0
Q ss_pred CCCCCCCceeecceE-EEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCcc
Q psy12252 280 DGCPRCGFVVYAAEQ-MISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGC 344 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~ 344 (356)
.+|++|+++|.+++. +.++|+.||++||+|+.|+++|.++.|+ ..+|++||+.||.++||++|.
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY-EFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSE-EETTEEECHHHHHHHCCCC--
T ss_pred CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeE-eECCeEeCHHHHHHHhhcccC
Confidence 489999999986554 6799999999999999999999998877 599999999999999999985
No 65
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.51 E-value=5e-15 Score=129.76 Aligned_cols=77 Identities=45% Similarity=1.078 Sum_probs=71.1
Q ss_pred CCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCCCccCCCcceeecc
Q psy12252 21 NPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMD 97 (356)
Q Consensus 21 ~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c~~c~~~~~~~~~~ 97 (356)
.++|..|+++|.+++.|.++|+.||++||+|..|+++|.+..|++++|++||+.||.++|+++|.+|++++|.+.++
T Consensus 115 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g~~~~~ 191 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHS 191 (192)
T ss_dssp CEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCCCCCCC
T ss_pred CCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcccceeec
Confidence 45699999999987888899999999999999999999988899999999999999999999999999988776553
No 66
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7e-15 Score=110.52 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=53.7
Q ss_pred CCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCc-cccccccccccCCCc
Q psy12252 281 GCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDND-IYCRGCYGKNFGPKG 343 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~-~yC~~c~~~~f~~~~ 343 (356)
+|++|+++|. ++.|.++++.||++||+|+.|+++|..+.++. .++. +||..||.++++..+
T Consensus 17 ~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~-~~~~~~~C~~C~~~~~~~~~ 78 (81)
T 1v6g_A 17 RCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVT-FNGKECMCQKCSLPVSVSGP 78 (81)
T ss_dssp BCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEE-EETTEEEEHHHHSCCSSCCC
T ss_pred cCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEE-eCCCCEEChhhhcccCCCCC
Confidence 6999999998 68899999999999999999999999887764 5554 699999999987753
No 67
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.2e-14 Score=109.50 Aligned_cols=65 Identities=25% Similarity=0.554 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCcc--ccCCcccCccccccccCC
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCT--EHEKELYCRQCHGRKYGP 82 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~--~~~g~~yC~~cy~~~~~~ 82 (356)
....++|..|+++|+..+.+.++++.||++||+|..|+++|....|+ +++|++||+.||.+++++
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 34678999999999888888899999999999999999999999887 579999999999998865
No 68
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.50 E-value=9.9e-15 Score=106.90 Aligned_cols=66 Identities=23% Similarity=0.484 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCCccccceE-EEeCCceeccCCcccccccccccCCCccccCCcccCccccccccC
Q psy12252 16 FVPAENPKCPACGKSVYAAEE-RVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81 (356)
Q Consensus 16 ~~~~~~~~C~~C~~~I~~~~~-i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 81 (356)
+.....++|..|+++|.+++. +.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++|+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 455678899999999998775 569999999999999999999998899999999999999998874
No 69
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=6.8e-15 Score=107.41 Aligned_cols=62 Identities=24% Similarity=0.629 Sum_probs=57.5
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKG 343 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~ 343 (356)
.+|++|+++|. ++.|.++++.||++||+|+.|+++|..+.|+ ..++++||+.||.++|+++.
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 6 SGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFV-KNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp SBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCE-EETTEEECHHHHHHHHCCCS
T ss_pred CcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccE-eECCeEECHHHhhhhcCCCC
Confidence 47999999998 5788999999999999999999999999876 58999999999999999975
No 70
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=117.43 Aligned_cols=64 Identities=25% Similarity=0.437 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCccccceEEEeCCceeccCCccccccccccc--CCCccccCCcccCccccccccC
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLD--STNCTEHEKELYCRQCHGRKYG 81 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~ 81 (356)
....++|.+|+++|.+.+.+.++|+.||++||+|..|+++|. +..|++++|++||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 445679999999999877899999999999999999999997 3589999999999999999875
No 71
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1e-14 Score=107.44 Aligned_cols=64 Identities=16% Similarity=0.402 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCccccccccccc-CCCccccCCcccCccccccccCCC
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLD-STNCTEHEKELYCRQCHGRKYGPK 83 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~~~ 83 (356)
+..++|.+|+++|.+ +.+.++|+.||++||+|..|+++|. +..|+++++++||..||.++++..
T Consensus 3 ~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 3 SGSSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCCSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCcCCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 467899999999997 7788999999999999999999998 678999999999999999987654
No 72
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=9.8e-15 Score=109.25 Aligned_cols=65 Identities=23% Similarity=0.425 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCCCC
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKG 84 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~c 84 (356)
....++|..|+++|. ++.+.++|+.||++||+|..|+++|.+.. ++++|++||..||.++|+|.+
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSS
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCC
Confidence 456789999999999 57788999999999999999999999875 599999999999999999864
No 73
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=9.9e-15 Score=107.10 Aligned_cols=64 Identities=28% Similarity=0.544 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCccccc-eEEEeCCceeccCCcccccccccccCCCccccCCcccCccccccccCC
Q psy12252 19 AENPKCPACGKSVYAA-EERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGP 82 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~-~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~ 82 (356)
+..++|..|+++|.++ ..+.++++.||++||+|..|+++|.+..|+++++++||..||.++|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 4678999999999975 478899999999999999999999888899999999999999998853
No 74
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.6e-14 Score=108.57 Aligned_cols=75 Identities=21% Similarity=0.457 Sum_probs=65.6
Q ss_pred cccccCCCCCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccC-CCcc-ccCCcccCccccccccCCCC
Q psy12252 9 KLDIIMPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDS-TNCT-EHEKELYCRQCHGRKYGPKG 84 (356)
Q Consensus 9 ~~~~~~~~~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~-~~~~-~~~g~~yC~~cy~~~~~~~c 84 (356)
+.+...+|.....++|..|+++|. ++.+.++++.||++||+|..|+++|.. ..|. ++++++||..||.++|++.+
T Consensus 3 ~~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~ 79 (81)
T 1x6a_A 3 SGSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79 (81)
T ss_dssp CCCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTS
T ss_pred CccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCC
Confidence 455666788888899999999999 577889999999999999999999975 5666 58999999999999998875
No 75
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=1.6e-14 Score=108.13 Aligned_cols=62 Identities=24% Similarity=0.515 Sum_probs=56.7
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCCCcc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGC 344 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~~~~ 344 (356)
.+|++|+++|. ++.|.++|+.||++||+|+.|+++|.++. + ..+|++||+.||.++|++++.
T Consensus 16 ~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 16 YICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-R-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-E-EETTEEECHHHHHTTSCCSSC
T ss_pred CCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-E-eECCEEeCHHHHHHhCCCCCC
Confidence 48999999999 68889999999999999999999999885 4 589999999999999999764
No 76
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.45 E-value=2.3e-14 Score=104.93 Aligned_cols=60 Identities=25% Similarity=0.567 Sum_probs=55.0
Q ss_pred CCCCCCCceeecceEE-EeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccC
Q psy12252 280 DGCPRCGFVVYAAEQM-ISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v-~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~ 340 (356)
.+|++|+++|.++|.+ .+.|+.||++||+|+.|+++|..+.++ ..+|++||+.||.++||
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY-EFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCE-EETTEEECHHHHHHHTC
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeE-eECCeEeCHHHHHHhhC
Confidence 4899999999987764 699999999999999999999988776 59999999999999997
No 77
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=3.3e-14 Score=104.68 Aligned_cols=61 Identities=15% Similarity=0.411 Sum_probs=54.3
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCC-CCCCccCCCCccccccccccccCCC
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLD-STNLNDGPDNDIYCRGCYGKNFGPK 342 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~-~~~~~~~~~g~~yC~~c~~~~f~~~ 342 (356)
.+|++|+++|.+ +.|.++++.||++||+|+.|+++|. +..|+ ..++++||..||.++|+.+
T Consensus 6 ~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 6 SGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTSSSS
T ss_pred CCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhhccc
Confidence 379999999984 7788999999999999999999998 44555 5899999999999998875
No 78
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.43 E-value=3.8e-14 Score=101.88 Aligned_cols=59 Identities=25% Similarity=0.610 Sum_probs=54.0
Q ss_pred CCCCCCCCCccccc-eEEEeCCceec--cCCcccccccccccCCCccccCCcccC-ccccccc
Q psy12252 21 NPKCPACGKSVYAA-EERVAGGYKFH--KMCFKCSMCSKFLDSTNCTEHEKELYC-RQCHGRK 79 (356)
Q Consensus 21 ~~~C~~C~~~I~~~-~~i~~~~~~~H--~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~ 79 (356)
.+.|.+|+++|..+ +.+.++|+.|| ++||+|..|+++|.+..|++++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 46899999999974 78899999999 999999999999999999999999999 8898764
No 79
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=4.4e-14 Score=103.63 Aligned_cols=61 Identities=28% Similarity=0.773 Sum_probs=54.9
Q ss_pred CCCCCCCceeecc-eEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCC
Q psy12252 280 DGCPRCGFVVYAA-EQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341 (356)
Q Consensus 280 ~~C~~C~~~I~~~-e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~ 341 (356)
.+|++|+++|.+. ..|.++++.||++||+|+.|+++|.+..|+ ..++++||+.||.++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFY-AVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEE-ESSSCEEEHHHHHHHHHT
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCE-eeCCeEECHHHHHHHHcc
Confidence 4899999999975 468899999999999999999999877777 599999999999999964
No 80
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.42 E-value=9.2e-14 Score=112.82 Aligned_cols=61 Identities=28% Similarity=0.620 Sum_probs=54.6
Q ss_pred CCCCCCCCceeecceEEEeCCcccccCcccccccCCCCC--CCCCccCCCCccccccccccccC
Q psy12252 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLD--STNLNDGPDNDIYCRGCYGKNFG 340 (356)
Q Consensus 279 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~--~~~~~~~~~g~~yC~~c~~~~f~ 340 (356)
..+|++|+++|...+.|.++++.||++||+|+.|+++|. +..|+ .++|++||+.||.++||
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~-~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCB-CSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceE-EECCEEeCHHHhhhhcC
Confidence 358999999999766789999999999999999999997 34566 69999999999999997
No 81
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.36 E-value=1.6e-13 Score=98.62 Aligned_cols=58 Identities=21% Similarity=0.562 Sum_probs=52.7
Q ss_pred CCCCCCceeecc-eEEEeCCcccc--cCcccccccCCCCCCCCCccCCCCcccc-cccccccc
Q psy12252 281 GCPRCGFVVYAA-EQMISKNRIWH--RRCFSCADCHRSLDSTNLNDGPDNDIYC-RGCYGKNF 339 (356)
Q Consensus 281 ~C~~C~~~I~~~-e~v~~~g~~~H--~~CF~C~~C~~~L~~~~~~~~~~g~~yC-~~c~~~~f 339 (356)
+|++|+++|.++ +.|.++|+.|| ++||+|+.|+++|.+..|+ ..+|+||| ..||.+++
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~~C~~k~~ 65 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM-PVEGMVFCSVECKKRMS 65 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCE-EETTEEESSHHHHHTTC
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceE-EECCEEecCHHHhhhhC
Confidence 799999999974 78899999999 9999999999999988887 59999999 88998763
No 82
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.35 E-value=1.4e-13 Score=111.82 Aligned_cols=63 Identities=25% Similarity=0.461 Sum_probs=56.0
Q ss_pred CCCCCCceeecceE-EEeCCcccccCcccccccCCCCCCC-CCccCCCCccccccccccccCCCcc
Q psy12252 281 GCPRCGFVVYAAEQ-MISKNRIWHRRCFSCADCHRSLDST-NLNDGPDNDIYCRGCYGKNFGPKGC 344 (356)
Q Consensus 281 ~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~L~~~-~~~~~~~g~~yC~~c~~~~f~~~~~ 344 (356)
+|++|+++|.+++. |.++++.||++||+|+.|+++|..+ .|+ ..++++||..||.++|+++|.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~~~~ 74 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKINGG 74 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHHHTC
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhccccC
Confidence 79999999997654 5799999999999999999999655 466 589999999999999999984
No 83
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.33 E-value=2.1e-13 Score=110.75 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=61.2
Q ss_pred CCCC--CCCCCCCccccce-EEEeCCceeccCCccccccccccc-CCCccccCCcccCccccccccCCCCCccCC
Q psy12252 19 AENP--KCPACGKSVYAAE-ERVAGGYKFHKMCFKCSMCSKFLD-STNCTEHEKELYCRQCHGRKYGPKGYGFGG 89 (356)
Q Consensus 19 ~~~~--~C~~C~~~I~~~~-~i~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~~~c~~c~~ 89 (356)
.... +|..|+++|...+ .+.++++.||++||+|..|+++|. +..|+.+++++||..||.++++++|..++.
T Consensus 4 ~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~ 78 (123)
T 2l3k_A 4 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGS 78 (123)
T ss_dssp SSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCC
T ss_pred hhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCC
Confidence 3445 8999999999755 557999999999999999999994 457999999999999999999998865543
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=5.1e-13 Score=100.24 Aligned_cols=72 Identities=17% Similarity=0.338 Sum_probs=61.4
Q ss_pred ccccCCCCCCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCc-ccCccccccccCC
Q psy12252 10 LDIIMPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKE-LYCRQCHGRKYGP 82 (356)
Q Consensus 10 ~~~~~~~~~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~-~yC~~cy~~~~~~ 82 (356)
.+...+|..+..++|..|+++|.+ +.+.++++.||++||+|..|+++|..+.++..++. +||..||.+++..
T Consensus 4 ~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 4 GSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSC
T ss_pred CcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCC
Confidence 455667777888999999999994 78889999999999999999999988777777765 6999999877643
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.08 E-value=6.7e-07 Score=53.77 Aligned_cols=28 Identities=39% Similarity=1.127 Sum_probs=26.5
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCF 307 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF 307 (356)
.+|++|+++|++.|.+.+.|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 3799999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.96 E-value=1.4e-06 Score=52.39 Aligned_cols=28 Identities=43% Similarity=0.871 Sum_probs=26.7
Q ss_pred CCCCCCCCccccceEEEeCCceeccCCc
Q psy12252 22 PKCPACGKSVYAAEERVAGGYKFHKMCF 49 (356)
Q Consensus 22 ~~C~~C~~~I~~~~~i~~~~~~~H~~CF 49 (356)
++|+.|++.|+..|.+.++|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 6899999999999999999999999998
No 87
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.45 E-value=1.8 Score=30.36 Aligned_cols=41 Identities=20% Similarity=0.418 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCccccceEEE--eCCceeccCCcc--------ccccccccc
Q psy12252 19 AENPKCPACGKSVYAAEERV--AGGYKFHKMCFK--------CSMCSKFLD 59 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~--~~~~~~H~~CF~--------C~~C~~~L~ 59 (356)
.....|+.|.+.+...+.+. .-+..||..|+. |-.|+.+|.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 45678999999987665443 358889998863 666666654
No 88
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.09 E-value=3.7 Score=29.44 Aligned_cols=45 Identities=29% Similarity=0.595 Sum_probs=28.6
Q ss_pred CCCCCCceeecceEEE--eCCcccccCcccccccCCCCCCCCCccCCCC-cccccccc
Q psy12252 281 GCPRCGFVVYAAEQMI--SKNRIWHRRCFSCADCHRSLDSTNLNDGPDN-DIYCRGCY 335 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g-~~yC~~c~ 335 (356)
.|..|++.-..++.|. .-++.||..|+. .+|.. ...| .-||..|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~-----~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLN-----PPLDK-----VPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSS-----SCCSS-----CCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccC-----CCccC-----CCCCCCcCCcCcc
Confidence 4888887655555554 446789999875 34433 1345 66787764
No 89
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=69.03 E-value=2.4 Score=31.14 Aligned_cols=41 Identities=22% Similarity=0.546 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCccccceEEE--eCCceeccCCc--------cccccccccc
Q psy12252 19 AENPKCPACGKSVYAAEERV--AGGYKFHKMCF--------KCSMCSKFLD 59 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~--~~~~~~H~~CF--------~C~~C~~~L~ 59 (356)
.....|+.|...+..++.+. .-+..||..|+ +|-.|+.+|.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34567999998887655443 35778888886 3555555543
No 90
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=67.84 E-value=3.6 Score=27.99 Aligned_cols=42 Identities=19% Similarity=0.457 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCc--------ccccccccccC
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCF--------KCSMCSKFLDS 60 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF--------~C~~C~~~L~~ 60 (356)
.....|+.|...+.....+..-|..||..|+ +|-.|++++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3456899999987643333346788888886 38888877764
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=63.95 E-value=8.3 Score=26.90 Aligned_cols=43 Identities=26% Similarity=0.574 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCccccceEEE--eCCceeccCCcc--------cccccccccCC
Q psy12252 19 AENPKCPACGKSVYAAEERV--AGGYKFHKMCFK--------CSMCSKFLDST 61 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~--~~~~~~H~~CF~--------C~~C~~~L~~~ 61 (356)
.....|..|.+.+.....+. .-+..||..|+. |-.|+..|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34678999999887554433 457788888874 66666666543
No 92
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=63.81 E-value=5.2 Score=25.73 Aligned_cols=40 Identities=23% Similarity=0.641 Sum_probs=26.2
Q ss_pred CCCCCCCCCCccccce-EEE--eCCceeccCCc--------cccccccccc
Q psy12252 20 ENPKCPACGKSVYAAE-ERV--AGGYKFHKMCF--------KCSMCSKFLD 59 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~-~i~--~~~~~~H~~CF--------~C~~C~~~L~ 59 (356)
....|+.|.+.+..++ .+. .-+..||..|+ +|-.|+++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567999999885422 222 35778888886 4666666554
No 93
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.08 E-value=2.6 Score=30.00 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCc
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCF 49 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF 49 (356)
+....|+.|...|+.+.....-+..||..|+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 4567899999999865543345667888886
No 94
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=62.15 E-value=5.1 Score=28.06 Aligned_cols=46 Identities=26% Similarity=0.615 Sum_probs=28.7
Q ss_pred CCCCCCceeecceEEE--eCCcccccCcccccccCCCCCCCCCccCCCC-ccccccccc
Q psy12252 281 GCPRCGFVVYAAEQMI--SKNRIWHRRCFSCADCHRSLDSTNLNDGPDN-DIYCRGCYG 336 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g-~~yC~~c~~ 336 (356)
.|..|++.-..++.|. .-++.||..|+. .+|... ..| .-||..|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~~-----P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-----PPLSSV-----PSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSS-----SCCSSC-----CSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCC-----CCcCCC-----CCCCCcCCcCccC
Confidence 4777887655555554 345789999875 344431 345 677887753
No 95
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=61.80 E-value=2.5 Score=29.03 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCCccccc----e--EEEeCCceeccCCc--------ccccccccccCCC
Q psy12252 17 VPAENPKCPACGKSVYAA----E--ERVAGGYKFHKMCF--------KCSMCSKFLDSTN 62 (356)
Q Consensus 17 ~~~~~~~C~~C~~~I~~~----~--~i~~~~~~~H~~CF--------~C~~C~~~L~~~~ 62 (356)
.+.+...|+.|.+.+... + .+..-|..||..|+ +|-.|++++....
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 345667899999987642 2 23346888999997 7888888887554
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=59.64 E-value=15 Score=27.83 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=28.5
Q ss_pred CCCCCCceeecceEEE--eCCcccccCcccccccCCCCCCCCCccCCCCccccccccccc
Q psy12252 281 GCPRCGFVVYAAEQMI--SKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKN 338 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~ 338 (356)
.|..|++.-.+...|. .-++.||..|+. .+|.. ..++.-||..|....
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~-----ppl~~-----~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ-----PVMKS-----VPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSS-----SCCSS-----CCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcC-----Ccccc-----CCCCCcCCcCCcCcC
Confidence 4667776644333443 346779999875 23332 245677888886544
No 97
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.31 E-value=3.1 Score=29.59 Aligned_cols=38 Identities=16% Similarity=0.380 Sum_probs=27.1
Q ss_pred CCCCCCCceeecceEEEeCCcccccCccc----------ccccCCCCC
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFS----------CADCHRSLD 317 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~----------C~~C~~~L~ 317 (356)
..|+.|...|..++.-..-+..||..|+. |-.|+..+.
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 47999999998765434556779999884 556665544
No 98
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=59.04 E-value=2.7 Score=28.06 Aligned_cols=30 Identities=20% Similarity=0.575 Sum_probs=24.0
Q ss_pred ccccccccccCCCccccCCcccC-ccccccc
Q psy12252 50 KCSMCSKFLDSTNCTEHEKELYC-RQCHGRK 79 (356)
Q Consensus 50 ~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~ 79 (356)
.|..|+..++...-+.++|+.|| +.|....
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccC
Confidence 47889998887777899999999 6776543
No 99
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=57.08 E-value=3.5 Score=27.49 Aligned_cols=42 Identities=21% Similarity=0.513 Sum_probs=30.5
Q ss_pred CCCCCCCCCccccc----e--EEEeCCceeccCCc--------ccccccccccCCC
Q psy12252 21 NPKCPACGKSVYAA----E--ERVAGGYKFHKMCF--------KCSMCSKFLDSTN 62 (356)
Q Consensus 21 ~~~C~~C~~~I~~~----~--~i~~~~~~~H~~CF--------~C~~C~~~L~~~~ 62 (356)
...|+.|.+.+... + .+..-|..||..|+ +|-.|++++....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 45799999887642 1 34457888999997 5888888886553
No 100
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.94 E-value=22 Score=24.82 Aligned_cols=55 Identities=25% Similarity=0.484 Sum_probs=35.3
Q ss_pred ccCCCCCCCCCCCCCCCCccccceEEEeCC-----ceeccCCcccccccccccCCCccccCCcccCccccccc
Q psy12252 12 IIMPFVPAENPKCPACGKSVYAAEERVAGG-----YKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79 (356)
Q Consensus 12 ~~~~~~~~~~~~C~~C~~~I~~~~~i~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 79 (356)
..++..+.....| .|+++-. +++|.-.+ .-||..|.. |.... .++.||..|-...
T Consensus 7 ~~~~~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg-------l~~~p----~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 7 GDMPVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTKP----RGKWFCPRCSQES 66 (71)
T ss_dssp SCCCCCTTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT-------CSSCC----SSCCCCTTTSSCS
T ss_pred cccccCCCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC-------cCcCC----CCCEECCCCCccc
Confidence 3445556677889 6999754 45554343 468988865 43322 4788999986543
No 101
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=55.61 E-value=6.2 Score=25.40 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=20.9
Q ss_pred CCCCCCCCCCccccceEEE-e--CCceeccCCc
Q psy12252 20 ENPKCPACGKSVYAAEERV-A--GGYKFHKMCF 49 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~-~--~~~~~H~~CF 49 (356)
+...|+.|.+.+..++.+. . -+..||..|+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 36 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECV 36 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHH
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHH
Confidence 4567999999887654333 2 5777888776
No 102
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.46 E-value=4.8 Score=27.20 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCccccc----e--EEEeCCceeccCCc--------cccccccccc
Q psy12252 18 PAENPKCPACGKSVYAA----E--ERVAGGYKFHKMCF--------KCSMCSKFLD 59 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~----~--~i~~~~~~~H~~CF--------~C~~C~~~L~ 59 (356)
......|+.|.+.+... . .+..-|..||..|+ +|-.|+++|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34567899999987643 1 23346888888887 4777777664
No 103
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=54.59 E-value=3 Score=26.19 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=16.7
Q ss_pred CCccCCCCcccccccccccc
Q psy12252 320 NLNDGPDNDIYCRGCYGKNF 339 (356)
Q Consensus 320 ~~~~~~~g~~yC~~c~~~~f 339 (356)
.|++..+-+|||..||+++-
T Consensus 20 pF~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 20 PFFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp CSBCCTTTTTSCHHHHHHHH
T ss_pred CeEEEecCccchHHHHHHHh
Confidence 47778899999999999753
No 104
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=54.54 E-value=9.4 Score=25.87 Aligned_cols=42 Identities=21% Similarity=0.525 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCccccceEEE--eCCceeccCCcc--------cccccccccC
Q psy12252 19 AENPKCPACGKSVYAAEERV--AGGYKFHKMCFK--------CSMCSKFLDS 60 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~--~~~~~~H~~CF~--------C~~C~~~L~~ 60 (356)
.....|+.|...+..++.+. .-+..||..|+. |-.|+..|..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 45678999999886544333 357788888863 6667666643
No 105
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.30 E-value=5.9 Score=27.04 Aligned_cols=41 Identities=15% Similarity=0.441 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCc--------ccccccccccCC
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCF--------KCSMCSKFLDST 61 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF--------~C~~C~~~L~~~ 61 (356)
.....|+.|...+.. .+..-+..||..|+ +|-.|++++...
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 346789999998775 45557888988885 377887777543
No 106
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.56 E-value=7.1 Score=26.97 Aligned_cols=40 Identities=20% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCCCCCCCCCccccceEEE--eCCceeccCCc--------cccccccccc
Q psy12252 20 ENPKCPACGKSVYAAEERV--AGGYKFHKMCF--------KCSMCSKFLD 59 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~--~~~~~~H~~CF--------~C~~C~~~L~ 59 (356)
....|..|.+.+.....+. .-+..||..|+ +|-.|+++|.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 4568999999987655443 45778888886 3666666554
No 107
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=48.99 E-value=6.7 Score=28.19 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCccccceEEEeCCceeccCCcccccccccccCCCccccCCcccCcc
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQ 74 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~ 74 (356)
+.....|..|.+.+.+...+.-....-|+-||-|+ +..|.. +...+++||..
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs--r~sIk~---q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS--RESIKA---QGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH--HHHHHH---HHSSSCCCCTT
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeecccc--HHHHHh---cCCCCcEECCC
Confidence 45567899999999988788877778899999997 344433 23467777743
No 108
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.79 E-value=10 Score=25.59 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCCccccceEEEeCC-----ceeccCCcccccccccccCCCccccCCcccCccccc
Q psy12252 15 PFVPAENPKCPACGKSVYAAEERVAGG-----YKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHG 77 (356)
Q Consensus 15 ~~~~~~~~~C~~C~~~I~~~~~i~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 77 (356)
+..+.+...| .|+++-. ++.|.-.+ +-||..|.. |.... .++.||..|-.
T Consensus 4 ~~d~~e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg-------l~~~p----~g~w~C~~C~~ 58 (60)
T 2vnf_A 4 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTKP----RGKWFCPRCSQ 58 (60)
T ss_dssp -----CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSCC----SSCCCCHHHHC
T ss_pred ccCCCCCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC-------CCcCC----CCCEECcCccC
Confidence 3345566778 7998744 46555444 568988865 43322 47788988754
No 109
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.16 E-value=8.2 Score=27.46 Aligned_cols=41 Identities=22% Similarity=0.501 Sum_probs=28.2
Q ss_pred CCCCCCCCCCcccc-----------ce-E-EE-eCCceeccCCcc--------cccccccccC
Q psy12252 20 ENPKCPACGKSVYA-----------AE-E-RV-AGGYKFHKMCFK--------CSMCSKFLDS 60 (356)
Q Consensus 20 ~~~~C~~C~~~I~~-----------~~-~-i~-~~~~~~H~~CF~--------C~~C~~~L~~ 60 (356)
....|+.|...+.. ++ . +. .-+..||..|+. |-.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678889888853 12 2 22 368899999974 8888887753
No 110
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=45.26 E-value=43 Score=22.98 Aligned_cols=42 Identities=29% Similarity=0.581 Sum_probs=29.9
Q ss_pred CCCCCCCceeecceEEE--eCCcccccCccc--------ccccCCCCCCCCC
Q psy12252 280 DGCPRCGFVVYAAEQMI--SKNRIWHRRCFS--------CADCHRSLDSTNL 321 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~--------C~~C~~~L~~~~~ 321 (356)
..|..|...+...+.+. .-+..||..|+. |-.|...|.....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 47999999887555443 457788988874 7777777766543
No 111
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=44.31 E-value=12 Score=25.48 Aligned_cols=50 Identities=28% Similarity=0.583 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCCCccccceEEEeCC-----ceeccCCcccccccccccCCCccccCCcccCccccc
Q psy12252 15 PFVPAENPKCPACGKSVYAAEERVAGG-----YKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHG 77 (356)
Q Consensus 15 ~~~~~~~~~C~~C~~~I~~~~~i~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 77 (356)
+..+.+...| .|+++-. ++.|--.+ +-||..|.. |... ..++.||..|-.
T Consensus 5 ~~d~~e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg-------l~~~----p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 5 AIDPNEPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS-------LTYK----PKGKWYCPKCRG 59 (62)
T ss_dssp -----CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHT
T ss_pred ccCCCCCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC-------cCcC----CCCCEECcCccc
Confidence 3345566778 8999744 46665444 678988865 4332 247888988854
No 112
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.26 E-value=7.4 Score=26.82 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCCCCCCCCCccccceEEEeCCceeccCCc--------ccccccccccCC
Q psy12252 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCF--------KCSMCSKFLDST 61 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF--------~C~~C~~~L~~~ 61 (356)
....|+.|.+.+.....+..-+..||..|+ +|-.|++++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345788888877642222256777888775 577777776543
No 113
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.97 E-value=28 Score=24.78 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCCccccceEEEe-C-----CceeccCCc
Q psy12252 17 VPAENPKCPACGKSVYAAEERVA-G-----GYKFHKMCF 49 (356)
Q Consensus 17 ~~~~~~~C~~C~~~I~~~~~i~~-~-----~~~~H~~CF 49 (356)
.+.....|..|......++.++. - ...||.+|+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl 49 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACL 49 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHH
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHH
Confidence 34566789999987754444432 2 278999996
No 114
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.39 E-value=16 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.535 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCccccceEEEeCCceeccCCc--------cccccccccc
Q psy12252 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCF--------KCSMCSKFLD 59 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF--------~C~~C~~~L~ 59 (356)
.....|+.|.+.+.. ..+..-+..||..|+ +|-.|++.+.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 455679999888754 333456777777774 3555555543
No 115
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=39.14 E-value=22 Score=25.24 Aligned_cols=45 Identities=29% Similarity=0.616 Sum_probs=27.2
Q ss_pred CCCCCCceeecceEEE--eCCcccccCcccccccCCCCCCCCCccCCCCc-ccccccc
Q psy12252 281 GCPRCGFVVYAAEQMI--SKNRIWHRRCFSCADCHRSLDSTNLNDGPDND-IYCRGCY 335 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~-~yC~~c~ 335 (356)
.|..|++.-.+++.|. .-++.||..|+. .+|.. ...+. -||..|.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~-----PpL~~-----~P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-----PPLSS-----VPSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSS-----SCCSS-----CCSSSCCCCTTTC
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCC-----CcccC-----CCCCCceECcCcc
Confidence 4777777765555554 346779999876 34432 13444 5676663
No 116
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=39.11 E-value=89 Score=23.60 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=17.0
Q ss_pred CCCCCCCCceEecceeeccC----CCcccccccc
Q psy12252 170 GKGCPRCGGVVFAAEQVLAK----GSEWHRKCFK 199 (356)
Q Consensus 170 ~~~C~~C~~~I~~~~~i~a~----~~~~H~~CF~ 199 (356)
...|..|+. .+++|.-. .+.||..|..
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc
Confidence 357888884 35555433 3678988864
No 117
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.96 E-value=33 Score=25.21 Aligned_cols=55 Identities=25% Similarity=0.528 Sum_probs=34.3
Q ss_pred ccCCCCCCCCCCCCCCCCccccceEEEeCC-----ceeccCCcccccccccccCCCccccCCcccCccccccc
Q psy12252 12 IIMPFVPAENPKCPACGKSVYAAEERVAGG-----YKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79 (356)
Q Consensus 12 ~~~~~~~~~~~~C~~C~~~I~~~~~i~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 79 (356)
.+++..+.....| .|+++-. +++|.-.+ .-||..|.. |.... .++.||..|-...
T Consensus 27 ~~~~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg-------l~~~p----~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 27 LDMPVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTKP----RGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCCSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT-------CSSCC----CSSCCCTTTCCCC
T ss_pred ccCCcCCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC-------cCcCC----CCCEECcCccCcC
Confidence 3455556667788 9999854 45554343 357887754 43322 4788999986543
No 118
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=38.24 E-value=6 Score=33.93 Aligned_cols=30 Identities=10% Similarity=0.341 Sum_probs=26.0
Q ss_pred cccccccccccCCCccccCCcccCcccccc
Q psy12252 49 FKCSMCSKFLDSTNCTEHEKELYCRQCHGR 78 (356)
Q Consensus 49 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 78 (356)
.+|..||.......-...+|+++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 579999999987766788999999999865
No 119
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=38.20 E-value=9.7 Score=33.43 Aligned_cols=40 Identities=18% Similarity=0.534 Sum_probs=28.0
Q ss_pred CCCCCCCCCCccccceEEEeCCceeccCCc----------cccccccccc
Q psy12252 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCF----------KCSMCSKFLD 59 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF----------~C~~C~~~L~ 59 (356)
....|..|.+.|..+..-.--+..||..|+ +|..|+.+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 467899999999865333234677888887 5666666543
No 120
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=36.89 E-value=46 Score=22.22 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=30.5
Q ss_pred CCCCCCCCCceeecceEEE--eCCcccccCcccccccCCCCCCCCCccCCCCcccccccccc
Q psy12252 278 NGDGCPRCGFVVYAAEQMI--SKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGK 337 (356)
Q Consensus 278 ~~~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~ 337 (356)
....|..|++. ++.|. .-.+.||..|.. .+|.. ..++.-||..|..+
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~-----p~l~~-----~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLD-----PDMEK-----APEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHC-----TTCCS-----CCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccC-----CCCCC-----CCCCceECcccccc
Confidence 34579999874 56665 345679998865 22321 25677889998654
No 121
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.53 E-value=12 Score=32.83 Aligned_cols=41 Identities=15% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCCCCCCCceeecceEEEeCCcccccCcc----------cccccCCCCCCC
Q psy12252 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCF----------SCADCHRSLDST 319 (356)
Q Consensus 279 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF----------~C~~C~~~L~~~ 319 (356)
...|+.|+..|..|..=.--+..||..|+ +|..|+......
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34799999999865322224678999998 677777765544
No 122
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=36.33 E-value=29 Score=23.96 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCCCCCCCCCccccceEEEeCCceeccCCc---------ccccccccccC
Q psy12252 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCF---------KCSMCSKFLDS 60 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF---------~C~~C~~~L~~ 60 (356)
....|+.|.+.+.. ..+..-|.+|+..|+ +|-.|+++|..
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45678888887653 344456777777664 46666666643
No 123
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.93 E-value=14 Score=25.20 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCCCCCCCCCccccceEEEeCCceeccCCc
Q psy12252 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCF 49 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF 49 (356)
....|+.|.+.+.. ..+..-|..||..|+
T Consensus 19 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci 47 (73)
T 2ysl_A 19 EEVICPICLDILQK-PVTIDCGHNFCLKCI 47 (73)
T ss_dssp CCCBCTTTCSBCSS-EEECTTCCEEEHHHH
T ss_pred cCCEeccCCcccCC-eEEcCCCChhhHHHH
Confidence 45678888877653 222244555555553
No 124
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=34.67 E-value=25 Score=25.21 Aligned_cols=47 Identities=21% Similarity=0.511 Sum_probs=34.0
Q ss_pred CCCCCCCceeecceEEEeCCcccccCcccccccCCCCCCCCCccCCCCccccc
Q psy12252 280 DGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCR 332 (356)
Q Consensus 280 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~ 332 (356)
-.|.-|.+.+.+...|.--...-|+-||-|+. ..|..+ ...+.+||.
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr--~sIk~q----~~~~EvyCP 62 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSR--ESIKAQ----GATGEVYCP 62 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHH--HHHHHH----HSSSCCCCT
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccH--HHHHhc----CCCCcEECC
Confidence 38999999998777788766778999999975 223221 245677874
No 125
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=33.86 E-value=50 Score=24.99 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=16.4
Q ss_pred CCCCCCCCCcc------ccceEEE--eCCceeccCCc
Q psy12252 21 NPKCPACGKSV------YAAEERV--AGGYKFHKMCF 49 (356)
Q Consensus 21 ~~~C~~C~~~I------~~~~~i~--~~~~~~H~~CF 49 (356)
.++|..|.+.= .+++.|. .-++.||..|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl 41 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCL 41 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHH
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchh
Confidence 46777786542 1223333 24677888776
No 126
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=33.46 E-value=15 Score=27.85 Aligned_cols=20 Identities=15% Similarity=0.516 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCCCccccce
Q psy12252 16 FVPAENPKCPACGKSVYAAE 35 (356)
Q Consensus 16 ~~~~~~~~C~~C~~~I~~~~ 35 (356)
+.++....|..|++.|.-++
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDS 39 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTC
T ss_pred EeCCCCCcchhhCCccCCCC
Confidence 44566789999999998776
No 127
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=32.75 E-value=25 Score=24.13 Aligned_cols=38 Identities=16% Similarity=0.447 Sum_probs=24.0
Q ss_pred CCCCCCCCCCccccceEEEe-CCceeccCCc----------ccccccccc
Q psy12252 20 ENPKCPACGKSVYAAEERVA-GGYKFHKMCF----------KCSMCSKFL 58 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~-~~~~~H~~CF----------~C~~C~~~L 58 (356)
....|+.|...+.. ..+.. -|..||..|+ +|-.|++++
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 34578888887764 33333 4777877774 566666654
No 128
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=32.58 E-value=21 Score=27.33 Aligned_cols=59 Identities=19% Similarity=0.447 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCccccc----e--EEEeCCceeccCCc--------ccccccccccCCCc---cccCCcccCccccc
Q psy12252 19 AENPKCPACGKSVYAA----E--ERVAGGYKFHKMCF--------KCSMCSKFLDSTNC---TEHEKELYCRQCHG 77 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~----~--~i~~~~~~~H~~CF--------~C~~C~~~L~~~~~---~~~~g~~yC~~cy~ 77 (356)
.+...|+.|.+.+... + .+..-|..||..|+ +|-.|++.+..... +..++...|.-|..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~ 80 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMD 80 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCC
Confidence 3456899999987642 1 34457999999987 79999999976543 33344555555543
No 129
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=31.41 E-value=18 Score=27.94 Aligned_cols=21 Identities=10% Similarity=0.414 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCccccceE
Q psy12252 16 FVPAENPKCPACGKSVYAAEE 36 (356)
Q Consensus 16 ~~~~~~~~C~~C~~~I~~~~~ 36 (356)
+.++....|..|++.|.-++.
T Consensus 15 YAKS~RA~Ck~Ck~kI~KgeL 35 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKENF 35 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSSSE
T ss_pred EeCCCCCCchhhCCccCCCCE
Confidence 345667899999999987763
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=31.19 E-value=25 Score=23.53 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCccccceEEEeCC-----ceeccCCcccccccccccCCCccccCCcccCccccc
Q psy12252 18 PAENPKCPACGKSVYAAEERVAGG-----YKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHG 77 (356)
Q Consensus 18 ~~~~~~C~~C~~~I~~~~~i~~~~-----~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 77 (356)
+.+...| .|+++-. ++.|.-.+ .-||..|.. |.... .++.||..|-.
T Consensus 6 ~~e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg-------l~~~p----~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD-------LTTKP----KGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSCC----SSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC-------cccCC----CCCEECcCccC
Confidence 4556678 8998754 46665444 578988865 43322 36788888754
No 131
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.13 E-value=22 Score=24.90 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=27.8
Q ss_pred CCCCCCCCCCccccceEEEeCCceeccCCc--------cccccccccc
Q psy12252 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCF--------KCSMCSKFLD 59 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~CF--------~C~~C~~~L~ 59 (356)
....|+.|...+.. ..+..-|..||..|+ +|-.|++++.
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45679999888764 344456788888886 4778877775
No 132
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.46 E-value=1.2e+02 Score=21.93 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCCCCCCCceeecceEEE--eCCcccccCcccccccCCCCCCCCCccCCCCccccccccccccCC
Q psy12252 279 GDGCPRCGFVVYAAEQMI--SKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341 (356)
Q Consensus 279 ~~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g~~yC~~c~~~~f~~ 341 (356)
...|..|++.-..++.|. .-++.||..|+. .+|.. ...+.-||..|..+.-+.
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-----Ppl~~-----~P~g~W~C~~C~~~~~~~ 70 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-----PPLPE-----IPRGIWRCPKCILAECKQ 70 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSS-----SCCSS-----CCSSCCCCHHHHHHHHSC
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCC-----CCccc-----CCCCCcCCccCcCccccC
Confidence 347999998754444554 345679999875 34432 246778899997754333
No 133
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.89 E-value=14 Score=24.84 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=7.2
Q ss_pred CCCCCCCCCCccc
Q psy12252 20 ENPKCPACGKSVY 32 (356)
Q Consensus 20 ~~~~C~~C~~~I~ 32 (356)
....|+.|.+.+.
T Consensus 14 ~~~~C~IC~~~~~ 26 (66)
T 2ecy_A 14 DKYKCEKCHLVLC 26 (66)
T ss_dssp CCEECTTTCCEES
T ss_pred cCCCCCCCChHhc
Confidence 3445666666554
No 134
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=27.72 E-value=37 Score=23.56 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=32.1
Q ss_pred CCCCCCCCCCccccceEEE--eCCceeccCCcccccccccccCCCccccCCcccCcccccccc
Q psy12252 20 ENPKCPACGKSVYAAEERV--AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKY 80 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~--~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 80 (356)
....|..|+++-.+...|. .-+.-||..|.. -++.. ..++..||..|-.+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-----~~~~~----~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-----IMAAP----PEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-----CSSCC----CSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCC-----CCccC----CCCCCEEChhccCchh
Confidence 4457999999865434444 235678887742 22211 2247889999976643
No 135
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=26.38 E-value=43 Score=22.88 Aligned_cols=48 Identities=27% Similarity=0.500 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCccccceEEE--eCCceeccCCcccccccccccCCCccccCCcccCcccccc
Q psy12252 19 AENPKCPACGKSVYAAEERV--AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGR 78 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~~i~--~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 78 (356)
.....|..|++. ++.|. .-++.||..|+ +-+|.. .-++..||..|-.+
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl-----~P~l~~----~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCH-----FPAGTS----RPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHH-----CTTTCC----CCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccC-----CCccCc----CCCCCEECccccCC
Confidence 345679999863 34444 35788998885 234433 23577899998543
No 136
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=26.04 E-value=36 Score=23.68 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=35.1
Q ss_pred cCCCCCCCCCCCCCCCCcc--ccceEEE--eCCceeccCCcccccccccccCCCccccCCcccCccccccc
Q psy12252 13 IMPFVPAENPKCPACGKSV--YAAEERV--AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79 (356)
Q Consensus 13 ~~~~~~~~~~~C~~C~~~I--~~~~~i~--~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 79 (356)
.|.+.......|..|++.= ..++.|. .-++.||..|..=. + .-+|..||..|-.+.
T Consensus 8 ~~~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-----~------vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 8 HMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----Y------IPEGQWLCRHCLQSR 67 (71)
T ss_dssp --CCCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-----S------CCSSCCCCHHHHHHH
T ss_pred ccccCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-----c------CCCCCcCCccCcCcC
Confidence 4555666778999999873 2334444 34678998885421 1 235788999986553
No 137
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=25.96 E-value=16 Score=26.85 Aligned_cols=38 Identities=13% Similarity=0.441 Sum_probs=24.7
Q ss_pred CCCCCCCCccccceEEE-eCCceeccCCc--------ccccccccccC
Q psy12252 22 PKCPACGKSVYAAEERV-AGGYKFHKMCF--------KCSMCSKFLDS 60 (356)
Q Consensus 22 ~~C~~C~~~I~~~~~i~-~~~~~~H~~CF--------~C~~C~~~L~~ 60 (356)
..|+.|...+.. ..+. .-|..||..|+ +|-.|+.++..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 568888887764 3333 36777777775 56667666653
No 138
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=25.53 E-value=14 Score=28.70 Aligned_cols=20 Identities=15% Similarity=0.516 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCccccce
Q psy12252 16 FVPAENPKCPACGKSVYAAE 35 (356)
Q Consensus 16 ~~~~~~~~C~~C~~~I~~~~ 35 (356)
+..+....|..|++.|.-++
T Consensus 33 yAkS~RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 33 YAKSGRASCKKCSESIPKDS 52 (116)
T ss_dssp ECSSSCCBCTTTCCBCCTTS
T ss_pred EeccCCccCcccCCccCCCC
Confidence 45677789999999998766
No 139
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=25.29 E-value=18 Score=27.69 Aligned_cols=20 Identities=10% Similarity=0.506 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCCccccce
Q psy12252 16 FVPAENPKCPACGKSVYAAE 35 (356)
Q Consensus 16 ~~~~~~~~C~~C~~~I~~~~ 35 (356)
+.++....|..|++.|.-++
T Consensus 14 yAkS~Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 14 YAKSNRSTCKGCMEKIEKGQ 33 (111)
T ss_dssp ECSSSCCBCTTTCCBCCTTC
T ss_pred EeecCCccccccCCCccCCc
Confidence 34567789999999998766
No 140
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.98 E-value=75 Score=22.79 Aligned_cols=10 Identities=30% Similarity=0.756 Sum_probs=7.2
Q ss_pred CCCCCCceEe
Q psy12252 172 GCPRCGGVVF 181 (356)
Q Consensus 172 ~C~~C~~~I~ 181 (356)
.|..|..+|.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 5777877765
No 141
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=24.68 E-value=28 Score=23.81 Aligned_cols=30 Identities=20% Similarity=0.435 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCccccce-EEEeC---CceeccCC
Q psy12252 19 AENPKCPACGKSVYAAE-ERVAG---GYKFHKMC 48 (356)
Q Consensus 19 ~~~~~C~~C~~~I~~~~-~i~~~---~~~~H~~C 48 (356)
.....|..|++++..++ .|.-. .+-||..|
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 34568999999987655 44444 55678766
No 142
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=24.61 E-value=72 Score=21.33 Aligned_cols=54 Identities=22% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCccc--cceEEE--eCCceeccCCcccccccccccCCCccccCCcccCcccccc
Q psy12252 19 AENPKCPACGKSVY--AAEERV--AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGR 78 (356)
Q Consensus 19 ~~~~~C~~C~~~I~--~~~~i~--~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 78 (356)
.....|..|+..-. .++.|. .-++.||..|.. -+|... ...-++..||..|-..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~-----p~l~~~-~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT-----PHIDSS-VIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS-----SCCCHH-HHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC-----Cccccc-ccCCCCCEECCCCcCc
Confidence 45678999998632 234444 356789988843 233221 0124577888888654
No 143
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=24.58 E-value=23 Score=26.60 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=19.1
Q ss_pred CCCCCCCCCccccce---------------E--EEeCCceeccCCc
Q psy12252 21 NPKCPACGKSVYAAE---------------E--RVAGGYKFHKMCF 49 (356)
Q Consensus 21 ~~~C~~C~~~I~~~~---------------~--i~~~~~~~H~~CF 49 (356)
...|+.|.+.+.... . +..-+..||..|+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci 70 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCL 70 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHH
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHH
Confidence 357999998875422 1 2235778888885
No 144
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=24.30 E-value=37 Score=22.84 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=8.5
Q ss_pred CCCCCCceeecce
Q psy12252 281 GCPRCGFVVYAAE 293 (356)
Q Consensus 281 ~C~~C~~~I~~~e 293 (356)
.|+.|++++..|+
T Consensus 22 ~C~~CKk~lqKGQ 34 (62)
T 2das_A 22 TCANCKKPLQKGQ 34 (62)
T ss_dssp BCTTTCCBCCTTS
T ss_pred ChhhccchhhcCc
Confidence 6777777766543
No 145
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=23.93 E-value=28 Score=27.35 Aligned_cols=38 Identities=21% Similarity=0.549 Sum_probs=26.2
Q ss_pred CCCCCCCCccccceEEEeCCceeccCCcc--------cccccccccC
Q psy12252 22 PKCPACGKSVYAAEERVAGGYKFHKMCFK--------CSMCSKFLDS 60 (356)
Q Consensus 22 ~~C~~C~~~I~~~~~i~~~~~~~H~~CF~--------C~~C~~~L~~ 60 (356)
..|+.|...+.. ..+..-|.+||..|+. |-.|++++..
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 359999988764 3444578888888843 7777766654
No 146
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=23.81 E-value=47 Score=25.21 Aligned_cols=57 Identities=14% Similarity=0.406 Sum_probs=36.5
Q ss_pred CCCCCCceeecc----e--EEEeCCcccccCcc--------cccccCCCCCCCCC--ccCCCCcccccccccc
Q psy12252 281 GCPRCGFVVYAA----E--QMISKNRIWHRRCF--------SCADCHRSLDSTNL--NDGPDNDIYCRGCYGK 337 (356)
Q Consensus 281 ~C~~C~~~I~~~----e--~v~~~g~~~H~~CF--------~C~~C~~~L~~~~~--~~~~~g~~yC~~c~~~ 337 (356)
.|+.|...+... + .+..-|..||..|+ .|-.|.+.+..... .+..++...|.-|.+.
T Consensus 9 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~ 81 (133)
T 4ap4_A 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDG 81 (133)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCB
T ss_pred CCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCc
Confidence 688888876532 1 33456888888877 68888888876653 1123455556666543
No 147
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.77 E-value=72 Score=23.98 Aligned_cols=38 Identities=18% Similarity=0.455 Sum_probs=17.6
Q ss_pred cccccccccccCCCccc-cCCcccCccccccccCCCCCcc
Q psy12252 49 FKCSMCSKFLDSTNCTE-HEKELYCRQCHGRKYGPKGYGF 87 (356)
Q Consensus 49 F~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~~~c~~c 87 (356)
|.|..|...+... ... .=|..||..|..+.+...|..|
T Consensus 23 ~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~C 61 (117)
T 1jm7_B 23 LRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVC 61 (117)
T ss_dssp TSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSS
T ss_pred CCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCC
Confidence 4455555444332 222 3455666666555444334333
No 148
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.45 E-value=76 Score=21.77 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=7.8
Q ss_pred CCCCCCCCCCccc
Q psy12252 20 ENPKCPACGKSVY 32 (356)
Q Consensus 20 ~~~~C~~C~~~I~ 32 (356)
....|+.|.+.+.
T Consensus 18 ~~~~C~IC~~~~~ 30 (85)
T 2ecv_A 18 EEVTCPICLELLT 30 (85)
T ss_dssp CCCCCTTTCSCCS
T ss_pred CCCCCCCCCcccC
Confidence 3456777766654
No 149
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.44 E-value=51 Score=24.55 Aligned_cols=10 Identities=40% Similarity=1.045 Sum_probs=5.1
Q ss_pred CCCCCCCceE
Q psy12252 171 KGCPRCGGVV 180 (356)
Q Consensus 171 ~~C~~C~~~I 180 (356)
..|..|.+++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 3455555544
No 150
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=22.41 E-value=21 Score=25.21 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=8.9
Q ss_pred CCCCCCCCCCcccc
Q psy12252 20 ENPKCPACGKSVYA 33 (356)
Q Consensus 20 ~~~~C~~C~~~I~~ 33 (356)
+...|+.|-+++..
T Consensus 10 ~~~~CpICle~~~~ 23 (78)
T 1e4u_A 10 DPVECPLCMEPLEI 23 (78)
T ss_dssp CCCBCTTTCCBCCT
T ss_pred cCCcCCccCccCcc
Confidence 34567788777643
No 151
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.36 E-value=24 Score=24.28 Aligned_cols=14 Identities=29% Similarity=0.857 Sum_probs=10.8
Q ss_pred CCcccCcccccccc
Q psy12252 67 EKELYCRQCHGRKY 80 (356)
Q Consensus 67 ~g~~yC~~cy~~~~ 80 (356)
+|.+||..||.+..
T Consensus 26 dgDLYC~rC~rE~H 39 (67)
T 2d8v_A 26 DGDLYCARCFREGH 39 (67)
T ss_dssp TSEEECSSHHHHHT
T ss_pred CCceehHHHHHHHc
Confidence 56789999997743
No 152
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.01 E-value=13 Score=31.88 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=7.1
Q ss_pred CCCCCCceeec
Q psy12252 281 GCPRCGFVVYA 291 (356)
Q Consensus 281 ~C~~C~~~I~~ 291 (356)
.|..|++.+..
T Consensus 174 ~C~~CGE~~~~ 184 (204)
T 2gvi_A 174 RCDVCGEYTYE 184 (204)
T ss_dssp ECTTTCCEEEG
T ss_pred ECCCCCCchhh
Confidence 56777666654
No 153
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=20.98 E-value=71 Score=27.64 Aligned_cols=46 Identities=26% Similarity=0.591 Sum_probs=26.5
Q ss_pred CCCCCCceeecceEEE--eCCcccccCcccccccCCCCCCCCCccCCCC-ccccccccc
Q psy12252 281 GCPRCGFVVYAAEQMI--SKNRIWHRRCFSCADCHRSLDSTNLNDGPDN-DIYCRGCYG 336 (356)
Q Consensus 281 ~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~L~~~~~~~~~~g-~~yC~~c~~ 336 (356)
.|..|+..-..++.|. .-++.||..|+. .+|.. ...| .-+|..|-.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~-----PPL~~-----vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-----PPLSS-----VPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC-------CCCCS-----CCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCC-----CCccc-----CCCCCCCCCcCCcC
Confidence 5888887654445554 346779999875 44543 1345 678888843
No 154
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.75 E-value=64 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=15.3
Q ss_pred CCCCCCCCCCccccceEEEeCCceeccCC
Q psy12252 20 ENPKCPACGKSVYAAEERVAGGYKFHKMC 48 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~C 48 (356)
....|+.|.+.+... .+..-+..||..|
T Consensus 18 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~C 45 (85)
T 2ecw_A 18 EEVTCPICLELLKEP-VSADCNHSFCRAC 45 (85)
T ss_dssp TTTSCTTTCSCCSSC-EECTTSCCBCHHH
T ss_pred cCCCCcCCChhhCcc-eeCCCCCHHHHHH
Confidence 456788887776542 2223454454444
No 155
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.50 E-value=42 Score=22.18 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=14.1
Q ss_pred CCCCCCCCC-ccccce---EEEeCCceeccCC
Q psy12252 21 NPKCPACGK-SVYAAE---ERVAGGYKFHKMC 48 (356)
Q Consensus 21 ~~~C~~C~~-~I~~~~---~i~~~~~~~H~~C 48 (356)
...|+.|.+ .+.... .+..-|..||..|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~C 34 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESC 34 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHH
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHH
Confidence 345777777 333322 1223455665555
No 156
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.41 E-value=32 Score=23.35 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCceeccCCccccccccc-ccCCCcc--ccCCcccCccccccc
Q psy12252 40 GGYKFHKMCFKCSMCSKF-LDSTNCT--EHEKELYCRQCHGRK 79 (356)
Q Consensus 40 ~~~~~H~~CF~C~~C~~~-L~~~~~~--~~~g~~yC~~cy~~~ 79 (356)
....+|+ ..|..|++. |.+..|. .=.+--+|..||...
T Consensus 5 ~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 5 SSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred cCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 3456777 888888864 6654433 223556788888763
No 157
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.32 E-value=59 Score=22.69 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=18.3
Q ss_pred CCCCCCCCCCccccce---EEEeCCceeccCC
Q psy12252 20 ENPKCPACGKSVYAAE---ERVAGGYKFHKMC 48 (356)
Q Consensus 20 ~~~~C~~C~~~I~~~~---~i~~~~~~~H~~C 48 (356)
....|+.|.+.+...+ .+..-|..||..|
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~C 45 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQC 45 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHH
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHH
Confidence 4567999988876533 2223566777766
No 158
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=20.03 E-value=48 Score=25.24 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=27.0
Q ss_pred CCCCCCCCccccceEEEeCCceeccCCc---------ccccccccccC
Q psy12252 22 PKCPACGKSVYAAEERVAGGYKFHKMCF---------KCSMCSKFLDS 60 (356)
Q Consensus 22 ~~C~~C~~~I~~~~~i~~~~~~~H~~CF---------~C~~C~~~L~~ 60 (356)
..|+.|...+.. ..+..-|.+||..|+ .|-.|++++..
T Consensus 53 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 569999888763 333456778888776 67777777754
Done!