RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12252
(356 letters)
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 128 bits (322), Expect = 8e-36
Identities = 84/191 (43%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 166 KAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTC 225
GK C C V+ AE+V +GS +H+ CF C C K LDS D+ IYCK+C
Sbjct: 3 NWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDE-IYCKSC 61
Query: 226 YGKKHKYCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRC 285
YGKK+ G G G S + G+S K DGCPRC
Sbjct: 62 YGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRC 121
Query: 286 GFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345
G VYAAE++I + WH+ CF CA C +SL+ST L D D +IYC+GCY KNFGPKG G
Sbjct: 122 GQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD-KDGEIYCKGCYAKNFGPKGFG 180
Query: 346 FGLGAGALTMA 356
FG GAGAL +
Sbjct: 181 FGQGAGALIHS 191
Score = 118 bits (296), Expect = 5e-32
Identities = 83/239 (34%), Positives = 99/239 (41%), Gaps = 58/239 (24%)
Query: 14 MPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCR 73
MP KC C K+VY AEE G FHK CF C +C K LDST H E+YC+
Sbjct: 1 MPNWGG-GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCK 59
Query: 74 QCHGRKYGPKGYGFGGGAGCLSMDAG-MCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 132
C+G+KYGPKG G G GAG LS D G + R
Sbjct: 60 SCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDG-- 117
Query: 133 GFGGGAGCLSMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSE 192
CPRCG V+AAE+V+ G
Sbjct: 118 ----------------------------------------CPRCGQAVYAAEKVIGAGKS 137
Query: 193 WHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK-YCKACYGKNFGPKGFGYGH 250
WH+ CF+C C K+L+S T K + YCK CY KNFGPKGFG+G
Sbjct: 138 WHKSCFRCAKCGKSLES-------------TTLADKDGEIYCKGCYAKNFGPKGFGFGQ 183
Score = 82.8 bits (204), Expect = 6e-19
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 14 MPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCR 73
M + CP CG++VYAAE+ + G +HK CF+C+ C K L+ST + + E+YC+
Sbjct: 108 MAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCK 167
Query: 74 QCHGRKYGPKGYGFGGGAGCLSMD 97
C+ + +GPKG+GFG GAG L
Sbjct: 168 GCYAKNFGPKGFGFGQGAGALIHS 191
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 92.9 bits (231), Expect = 7e-24
Identities = 43/82 (52%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 14 MPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCR 73
MP KC ACG++VY AEE G FH+ CF C +C K LDST H+ E+YC+
Sbjct: 1 MPNWGG-GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCK 59
Query: 74 QCHGRKYGPKGYGFGGGAGCLS 95
C+G+KYGPKGYG+G GAG L+
Sbjct: 60 SCYGKKYGPKGYGYGQGAGTLN 81
Score = 80.9 bits (200), Expect = 2e-19
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKN 338
G+ C CG VY AE++ R +HR CF C C ++LDST + D ++YC+ CYGK
Sbjct: 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIH-DAEVYCKSCYGKK 65
Query: 339 FGPKGCGFGLGAGALT 354
+GPKG G+G GAG L
Sbjct: 66 YGPKGYGYGQGAGTLN 81
Score = 69.0 bits (169), Expect = 3e-15
Identities = 35/84 (41%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 166 KAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTC 225
G C CG V+ AE+V G +HR CF C C K LDS D ++YCK+C
Sbjct: 3 NWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIH-DAEVYCKSC 61
Query: 226 YGKKHKYCKACYGKNFGPKGFGYG 249
YGKK +GPKG+GYG
Sbjct: 62 YGKK-----------YGPKGYGYG 74
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 88.9 bits (221), Expect = 2e-22
Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQ-CHGRKY 80
PKCP C K VY AE + G +H+ C KC C K L S EHE + YC C+ +
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF 60
Query: 81 GPKGYGFGGG 90
GPKG+G GG
Sbjct: 61 GPKGFGRGGA 70
Score = 75.5 bits (186), Expect = 1e-17
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKY 232
CP+C V+ AE+V + G +WHR C KC C KTL S + + YC
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEH-EGKPYCN--------- 52
Query: 233 CKACYGKNFGPKGFGYGHSPT 253
CY FGPKGFG G + +
Sbjct: 53 -HPCYSAMFGPKGFGRGGAES 72
Score = 70.1 bits (172), Expect = 1e-15
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
CP+C VY AE++ S + WHR C C C ++L S + CY FGP
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP 62
Query: 342 KGCGFG 347
KG G G
Sbjct: 63 KGFGRG 68
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 86.1 bits (213), Expect = 3e-21
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 14 MPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCR 73
M F C C K+VY E +A FH CF+CS C+ L +YC+
Sbjct: 8 MKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCK 67
Query: 74 QCHGRKYGPKG---YGFGGGAG 92
+ + KG GFG G
Sbjct: 68 PHFNQLFKSKGNYDEGFGSGPS 89
Score = 69.5 bits (170), Expect = 3e-15
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 271 TSGLKGRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIY 330
+ + C C VY E++++ +++H CF C+ C+ L IY
Sbjct: 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA-SLHGRIY 65
Query: 331 CRGCYGKNFGPKGC---GFGLGAGA 352
C+ + + F KG GFG G +
Sbjct: 66 CKPHFNQLFKSKGNYDEGFGSGPSS 90
Score = 67.6 bits (165), Expect = 1e-14
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 161 DTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDI 220
K +A + C C V+ E++LA +H CF+C CN L I
Sbjct: 6 SGMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGT-YASLHGRI 64
Query: 221 YCKTCYGKKHKYCKACYGKNFGPK 244
YCK + + K K Y + FG
Sbjct: 65 YCKPHFNQLFK-SKGNYDEGFGSG 87
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 80.1 bits (198), Expect = 3e-19
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 21 NPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYC-RQCHGRK 79
KCP C K+VY AE+ + G +HK C KC CSK L EH+ + +C + C+
Sbjct: 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATL 68
Query: 80 YGPKGY 85
+G
Sbjct: 69 FGSGPS 74
Score = 62.8 bits (153), Expect = 5e-13
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYC-RGCYGKNFG 340
CP+C VY AE++ S + WH+ C C C ++L + D +C + CY FG
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAE-HDGKPFCHKPCYATLFG 70
Query: 341 PKG 343
Sbjct: 71 SGP 73
Score = 62.4 bits (152), Expect = 7e-13
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKY 232
CP+C V+ AE+V + G +WH+ C KC C+KTL + D +C
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAE-HDGKPFC---------- 60
Query: 233 CKACYGKNFGPKG 245
K CY FG
Sbjct: 61 HKPCYATLFGSGP 73
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 65.9 bits (161), Expect = 4e-14
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 22 PKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKY 80
PKC C K++ A ++ V G +HK CF CS C + + + + ++ YC CH K+
Sbjct: 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75
Query: 81 GPK 83
Sbjct: 76 ASG 78
Score = 55.1 bits (133), Expect = 3e-10
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C C + A +Q + K +WH+ CF+C++C + + + + D YC C+ F
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP-KGEDFYCVTCHETKFA 76
Query: 341 PK 342
Sbjct: 77 SG 78
Score = 51.2 bits (123), Expect = 6e-09
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKH 230
C C + A +Q + KG+ WH+ CF C +C + + + + +D YC TC+ K
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP-KGEDFYCVTCHETKF 75
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 63.4 bits (154), Expect = 3e-13
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 14 MPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKE--LY 71
C CG+ +Y E G+ FH+ CF+C C L +H + Y
Sbjct: 8 QHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFY 67
Query: 72 CRQCHGRKYGPKGYG 86
C Q + G
Sbjct: 68 CLQHLPQTDSGPSSG 82
Score = 58.4 bits (141), Expect = 2e-11
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 162 TAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSIN-ACDGPDKDI 220
+A G C CG ++ E++ G +HR CF+C C TL D
Sbjct: 7 GQHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHF 66
Query: 221 YCKTCYGK 228
YC +
Sbjct: 67 YCLQHLPQ 74
Score = 58.0 bits (140), Expect = 3e-11
Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 268 ARPTSGLKGRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLN-DGPD 326
+ GD C CG +Y E++ +HR CF C C +L D
Sbjct: 4 GSSGQHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGD 63
Query: 327 NDIYCRGCYGKNFGPKGCG 345
YC + G
Sbjct: 64 GHFYCLQHLPQTDSGPSSG 82
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 62.8 bits (153), Expect = 5e-13
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 22 PKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKY 80
C ACG++V ++ GG +H+ CF CS C + L S + + YC C+ K+
Sbjct: 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65
Query: 81 GPK 83
Sbjct: 66 ASG 68
Score = 55.5 bits (134), Expect = 2e-10
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C CG V + + + WH CF C+ C + L S + YC CY F
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP-DKGAHYCVPCYENKFA 66
Query: 341 PK 342
Sbjct: 67 SG 68
Score = 52.0 bits (125), Expect = 3e-09
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKH 230
C CG V + L G WH CF C C + L S + YC CY K
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP-DKGAHYCVPCYENKF 65
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 62.8 bits (153), Expect = 2e-12
Identities = 31/173 (17%), Positives = 49/173 (28%), Gaps = 48/173 (27%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK- 231
C C + + A WH C C C L + + Y K +
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEV-----------GRRLYYKLGRK 53
Query: 232 YCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYA 291
C+ Y + FG G C C + A
Sbjct: 54 LCRRDYLRLFGQDGL-----------------------------------CASCDKRIRA 78
Query: 292 AEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKG 343
E + K++++H CF CA C + + ++DI C + G
Sbjct: 79 YEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKING 131
Score = 47.4 bits (113), Expect = 4e-07
Identities = 29/213 (13%), Positives = 46/213 (21%), Gaps = 86/213 (40%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
C C +++ A +H+ C C +C L
Sbjct: 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRR----------------- 45
Query: 82 PKGYGFGGGAGCLSMDAGMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCL 141
CR+ + R +G G
Sbjct: 46 ----------------------------LYYKLGRKLCRRDYLRLFGQDGL--------- 68
Query: 142 SMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCPRCGGVVFAAEQVL-AKGSEWHRKCFKC 200
C C + A E + K +H +CFKC
Sbjct: 69 -------------------------------CASCDKRIRAYEMTMRVKDKVYHLECFKC 97
Query: 201 RDCNKTLDSINACDGPDKDIYCKTCYGKKHKYC 233
C K + + DI C+ + K
Sbjct: 98 AACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130
Score = 44.7 bits (106), Expect = 4e-06
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLN-DGPDNDIYCRGCYGKNFG 340
C C + + + ++ WH C SC C L CR Y + FG
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 64
Query: 341 PK----GCGFGLGAGALTM 355
C + A +TM
Sbjct: 65 QDGLCASCDKRIRAYEMTM 83
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 60.5 bits (147), Expect = 3e-12
Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 22 PKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKY 80
C C K++ ++ G +H+ CF C C + + + + + + +C C+ +++
Sbjct: 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65
Query: 81 GPK 83
Sbjct: 66 ASG 68
Score = 53.2 bits (128), Expect = 1e-09
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C C + + + K WH CF C C + + + + DN +C CY K
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP-KDNQNFCVPCYEKQHA 66
Query: 341 PK 342
Sbjct: 67 SG 68
Score = 49.7 bits (119), Expect = 2e-08
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKH 230
C C + + + KGS WH CF C C + + + + D +C CY K+H
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP-KDNQNFCVPCYEKQH 65
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 62.2 bits (151), Expect = 6e-12
Identities = 35/187 (18%), Positives = 54/187 (28%), Gaps = 56/187 (29%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK- 231
C C + + A WH KC KC DC+ L C+ +
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--------------RCFSRGESV 54
Query: 232 YCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYA 291
YCK + K FG K C C +
Sbjct: 55 YCKDDFFKRFGTK-------------------------------------CAACQLGIPP 77
Query: 292 AEQMIS-KNRIWHRRCFSCADCHRSLDS-TNLNDGPDNDIYCRGCYGKNFGPK--GCGFG 347
+ + ++ ++H CF+C C R L + D+ + C+ Y G G
Sbjct: 78 TQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGS 137
Query: 348 LGAGALT 354
G +
Sbjct: 138 GGGTPMV 144
Score = 52.5 bits (126), Expect = 2e-08
Identities = 29/145 (20%), Positives = 44/145 (30%), Gaps = 17/145 (11%)
Query: 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79
E P C C + + A +H C KCS C L C + +YC+ ++
Sbjct: 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKDDFFKR 63
Query: 80 YGPK--GYGFGGGAGCLSMDAG------------MCSKFLD--STNCTEHEKELYCRQCH 123
+G K G + A +C + L + L C+ +
Sbjct: 64 FGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 123
Query: 124 GRKYGPKGYGFGGGAGCLSMDAGEH 148
G GG G M A
Sbjct: 124 ETAKQGGSGGSGGSGGGTPMVAASP 148
Score = 46.8 bits (111), Expect = 2e-06
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C C + + + +R WH +C C+DCH L + +YC+ + K FG
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSR--GESVYCKDDFFKRFGT 66
Query: 342 K--GCGFGLGAGALTM 355
K C G+ +
Sbjct: 67 KCAACQLGIPPTQVVR 82
Score = 41.0 bits (96), Expect = 2e-04
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 170 GKGCPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINA-CDGPDKDIYCKTCYG 227
G C C + + V A+ +H CF C C + L + + D + CK Y
Sbjct: 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124
Query: 228 KKHKYCKACYGKNFGPKGFGYGHSP 252
+ G + G
Sbjct: 125 TAKQGGSGGSGGSGGGTPMVAASPE 149
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 59.2 bits (143), Expect = 1e-10
Identities = 32/166 (19%), Positives = 50/166 (30%), Gaps = 54/166 (32%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK- 231
C C + + A WH KC KC DC+ L C+ +
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--------------RCFSRGESV 108
Query: 232 YCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYA 291
YCK + K FG K C C +
Sbjct: 109 YCKDDFFKRFGTK-------------------------------------CAACQLGIPP 131
Query: 292 AEQ-MISKNRIWHRRCFSCADCHRSLDS-TNLNDGPDNDIYCRGCY 335
+ +++ ++H CF+C C R L + D+ + C+ Y
Sbjct: 132 TQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177
Score = 46.8 bits (111), Expect = 2e-06
Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 17/125 (13%)
Query: 15 PFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQ 74
E P C C + + A +H C KCS C L C + +YC+
Sbjct: 54 SGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKD 112
Query: 75 CHGRKYGPK--GYGFGGGAGCLSMDAG------------MCSKFLD--STNCTEHEKELY 118
+++G K G + A +C + L + L
Sbjct: 113 DFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLV 172
Query: 119 CRQCH 123
C+ +
Sbjct: 173 CKADY 177
Score = 46.4 bits (110), Expect = 2e-06
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C C + + + +R WH +C C+DCH L + +YC+ + K FG
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSR--GESVYCKDDFFKRFGT 120
Query: 342 K--GCGFGLGAGALTM 355
K C G+ +
Sbjct: 121 KCAACQLGIPPTQVVR 136
Score = 39.5 bits (92), Expect = 5e-04
Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 45/128 (35%)
Query: 101 CSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVI 160
C L C + +YC+ +++G K
Sbjct: 93 CHVPLAER-CFSRGESVYCKDDFFKRFGTK------------------------------ 121
Query: 161 DTAKIKAAPGKGCPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINA-CDGPDK 218
C C + + V A+ +H CF C C + L + + D
Sbjct: 122 ------------CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 169
Query: 219 DIYCKTCY 226
+ CK Y
Sbjct: 170 RLVCKADY 177
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 56.3 bits (136), Expect = 1e-10
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 21 NPKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79
+ C C AE+ V + G +H+ CF C+ C + E E YC
Sbjct: 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70
Query: 80 YGP 82
+ P
Sbjct: 71 FAP 73
Score = 49.3 bits (118), Expect = 3e-08
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C RC AE++++ ++H +CF CA C + + + YC + F
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE-FEGRKYCEHDFQMLFA 72
Query: 341 P 341
P
Sbjct: 73 P 73
Score = 45.9 bits (109), Expect = 4e-07
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK 231
C RC G AE+++ + G +H +CF C C + P+ Y + K
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF--------PEGLFYEF----EGRK 61
Query: 232 YCKACYGKNFGP 243
YC+ + F P
Sbjct: 62 YCEHDFQMLFAP 73
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 55.9 bits (135), Expect = 1e-10
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 16 FVPAENPKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQ 74
F + + C C AE+ V + G +H+ CF C+ C + E E YC
Sbjct: 6 FQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEH 65
Query: 75 CHGRKYG 81
+
Sbjct: 66 DFQMLFA 72
Score = 47.8 bits (114), Expect = 1e-07
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C RC AE++++ ++H +CF CA C + + + YC + F
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEF-EGRKYCEHDFQMLFA 72
Score = 45.1 bits (107), Expect = 8e-07
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 229
C RC G AE+++ + G +H +CF C C + + + YC+ +
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR-KYCEHDFQML 70
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 57.0 bits (138), Expect = 2e-10
Identities = 33/171 (19%), Positives = 47/171 (27%), Gaps = 55/171 (32%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK- 231
C C ++F+ E A+ WH K F C DC+ L + K
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAG-------------EIYVMVNDKP 52
Query: 232 YCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVYA 291
CK CY KN C C +
Sbjct: 53 VCKPCYVKNHAVV-------------------------------------CQGCHNAIDP 75
Query: 292 AEQMIS-KNRIWH--RRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNF 339
Q ++ N WH CF C+ C + L + ++C K
Sbjct: 76 EVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPV-EGMVFCSVECKKRM 125
Score = 56.3 bits (136), Expect = 4e-10
Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 16/125 (12%)
Query: 19 AENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGR 78
+E P+C C + +++ E A +H F C C L + C+ C+ +
Sbjct: 1 SEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVK 60
Query: 79 KYGPK--GYGFGGGAGCLSMDAG--------------MCSKFLDSTNCTEHEKELYCRQC 122
+ G + CSK L E ++C
Sbjct: 61 NHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVE 120
Query: 123 HGRKY 127
++
Sbjct: 121 CKKRM 125
Score = 47.4 bits (113), Expect = 5e-07
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C C ++++ E ++N+ WH + F C DC L ++ C+ CY KN
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV-MVNDKPVCKPCYVKNHAV 64
Query: 342 K--GCGFGLGAGALTM 355
GC + +
Sbjct: 65 VCQGCHNAIDPEVQRV 80
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 54.8 bits (132), Expect = 4e-10
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 14 MPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCR 73
P C C + + + +A ++H CFKC CS L + YC
Sbjct: 8 KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGE-YISKDGVPYCE 66
Query: 74 QCHGRKYGPK 83
+ ++G
Sbjct: 67 SDYHAQFGSG 76
Score = 49.4 bits (118), Expect = 3e-08
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK- 231
C C + + +LA +WH CFKC+ C+ L K
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG--------------EYISKDGVP 63
Query: 232 YCKACYGKNFGPK 244
YC++ Y FG
Sbjct: 64 YCESDYHAQFGSG 76
Score = 47.8 bits (114), Expect = 1e-07
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C C + + +++ ++ WH CF C C L + D YC Y FG
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYI--SKDGVPYCESDYHAQFGS 75
Query: 342 K 342
Sbjct: 76 G 76
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 57.3 bits (138), Expect = 6e-10
Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 48/178 (26%)
Query: 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 229
K C CGG + + A S WH +C KC C L I + Y K
Sbjct: 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIG-----------TSSYTKS 53
Query: 230 HK-YCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFV 288
C+ Y + FG G C CG
Sbjct: 54 GMILCRNDYIRLFGNSGA-----------------------------------CSACGQS 78
Query: 289 VYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345
+ A+E ++ + ++H +CF+C+ C L + + ++C
Sbjct: 79 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLN 136
Score = 45.4 bits (107), Expect = 6e-06
Identities = 26/148 (17%), Positives = 38/148 (25%), Gaps = 19/148 (12%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKE--LYCRQCHGRK 79
+C CG + A +H C KCS C L + + K + CR + R
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 65
Query: 80 YGPKGYGFGGGAGCLSMDAGM----------------CSKFLDS-TNCTEHEKELYCRQC 122
+G G G + + M C L L+C
Sbjct: 66 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 125
Query: 123 HGRKYGPKGYGFGGGAGCLSMDAGEHLT 150
GG G +
Sbjct: 126 RPTALINGHLNSGGSGGSGGSGGDVMVV 153
Score = 41.9 bits (98), Expect = 9e-05
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK 231
C CG + A+E V+ A+G+ +H KCF C C L + + ++C+
Sbjct: 72 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALI 131
Query: 232 YCKACYGKNFGPKG 245
G + G G
Sbjct: 132 NGHLNSGGSGGSGG 145
Score = 38.1 bits (88), Expect = 0.002
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLN-DGPDNDIYCRGCYGKNFG 340
C CG + + + + WH RC C+ C L + I CR Y + FG
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 341 PK----GCGFGLGAGALTM 355
CG + A L M
Sbjct: 68 NSGACSACGQSIPASELVM 86
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 52.8 bits (126), Expect = 5e-09
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKE--LYCRQC 75
+C CG + A +H C KCS C L + + K + CR
Sbjct: 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRND 117
Query: 76 HGRKYG 81
+ R +G
Sbjct: 118 YIRLFG 123
Score = 51.7 bits (123), Expect = 1e-08
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 150 TENNAPRTTVIDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTL-D 208
+++ K C CGG + + A S WH +C KC C L D
Sbjct: 41 SQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD 100
Query: 209 SINACDGPDKDIYCKTCYGKK 229
+ I C+ Y +
Sbjct: 101 IGTSSYTKSGMILCRNDYIRL 121
Score = 51.3 bits (122), Expect = 2e-08
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 250 HSPTLVSTSGESTMQFYDARPTSGLKGRNGDG---CPRCGFVVYAAEQMISKNRIWHRRC 306
V + + + + G G G C CG + + + + WH RC
Sbjct: 29 KMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRC 88
Query: 307 FSCADCHRSLDSTNLN-DGPDNDIYCRGCYGKNFG 340
C+ C L + I CR Y + FG
Sbjct: 89 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 52.7 bits (126), Expect = 6e-09
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKE--LYCRQC 75
+C CG + A +H C KCS C L + + K + CR
Sbjct: 2 SLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRND 61
Query: 76 HGRKYGPKGYGFGGGAGCLSMDAGMCSK-FLDSTNCTEHEKELYCRQCHGRKYGPKGY 132
+ R +G G G GG D + + L + ++ L R + + G
Sbjct: 62 YIRLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGI 119
Score = 44.2 bits (104), Expect = 5e-06
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTL-DSINACDGPDKDIYCKTCYGK 228
K C CGG + + A S WH +C KC C L D + I C+ Y +
Sbjct: 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 64
Query: 229 KHKYCKACYGKNFGPKGF 246
A G
Sbjct: 65 LFGNSGAGGSGGHMGSGG 82
Score = 41.9 bits (98), Expect = 4e-05
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLN-DGPDNDIYCRGCYGKNFG 340
C CG + + + + WH RC C+ C L + I CR Y + FG
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 341 PKGCG 345
G G
Sbjct: 68 NSGAG 72
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM-
protein 2, SLIM 2, FHL3, SLIM2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 82
Score = 51.3 bits (123), Expect = 6e-09
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 22 PKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKY 80
C C + + + FH+ CF+C C + L T + EL C C+ +
Sbjct: 16 NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAF 75
Query: 81 GPK 83
Sbjct: 76 SSG 78
Score = 47.1 bits (112), Expect = 2e-07
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C C ++ + + ++R +H CF C C RSL D+++ C CY F
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTC-QDSELLCNDCYCSAFS 76
Query: 341 PK 342
Sbjct: 77 SG 78
Score = 41.7 bits (98), Expect = 2e-05
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK 231
C C ++ + L + +H CF+C C ++L + + +
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLAD-------------EPFTCQDSE 64
Query: 232 -YCKACYGKNFGPK 244
C CY F
Sbjct: 65 LLCNDCYCSAFSSG 78
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 50.8 bits (122), Expect = 7e-09
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
C C K + +HK CF C+ C K L T + YC C Y
Sbjct: 6 SGCVQCKKPI-TTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA 64
Query: 82 PK 83
Sbjct: 65 SG 66
Score = 43.5 bits (103), Expect = 3e-06
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C +C + + + + WH+ CF C C + L D+ YC C+ +
Sbjct: 8 CVQCKKPI-TTGGVTYREQPWHKECFVCTACRKQLSGQRFTA-RDDFAYCLNCFCDLYAS 65
Query: 342 K 342
Sbjct: 66 G 66
Score = 43.1 bits (102), Expect = 4e-06
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 15/73 (20%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK- 231
C +C + V + WH++CF C C K L + +
Sbjct: 8 CVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSG-------------QRFTARDDFA 53
Query: 232 YCKACYGKNFGPK 244
YC C+ +
Sbjct: 54 YCLNCFCDLYASG 66
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 51.6 bits (124), Expect = 7e-09
Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 53/143 (37%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGK-KH 230
C C + A + + K WH CF+C C L + +T K
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLAN-------------ETFVAKDNK 54
Query: 231 KYCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFVVY 290
C C + PK C C +
Sbjct: 55 ILCNKCTTREDSPK-------------------------------------CKGCFKAIV 77
Query: 291 AAEQMIS-KNRIWHRRCFSCADC 312
A +Q + K +WH+ CFS
Sbjct: 78 AGDQNVEYKGTVWHKDCFSGPSS 100
Score = 48.6 bits (116), Expect = 9e-08
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 22 PKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKY 80
C C K + A + V +H CF+C+ C L + + ++ C +C R+
Sbjct: 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED 65
Query: 81 GPK 83
PK
Sbjct: 66 SPK 68
Score = 45.5 bits (108), Expect = 1e-06
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C C + A + + KNR WH CF CA C L + DN I C C +
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAK-DNKILCNKCTTREDS 66
Query: 341 PK--GCGFGLGAGALTM 355
PK GC + AG +
Sbjct: 67 PKCKGCFKAIVAGDQNV 83
Score = 40.1 bits (94), Expect = 8e-05
Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 43/104 (41%)
Query: 101 CSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVI 160
C L + + ++ C +C R+ PK
Sbjct: 39 CLHPLANETFVAKDNKILCNKCTTREDSPK------------------------------ 68
Query: 161 DTAKIKAAPGKGCPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDC 203
C C + A +Q + KG+ WH+ CF
Sbjct: 69 ------------CKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 33.5 bits (77), Expect = 0.019
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 22 PKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMC 54
PKC C K++ A ++ V G +HK CF
Sbjct: 67 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 50.0 bits (120), Expect = 1e-08
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
P C AC + + A G ++H F C+ C K E + YC + + +G
Sbjct: 6 PICGACRRPIEG-RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 64
Query: 82 P 82
Sbjct: 65 D 65
Score = 41.1 bits (97), Expect = 2e-05
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C C + + + + WH F CA C + + YC Y + FG
Sbjct: 8 CGACRRPIEG-RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYE-RKGLAYCETHYNQLFGD 65
Score = 40.7 bits (96), Expect = 3e-05
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK- 231
C C + V A G +WH + F C C K Y +K
Sbjct: 8 CGACRRPI-EGRVVNAMGKQWHVEHFVCAKCEKPFLG-------------HRHYERKGLA 53
Query: 232 YCKACYGKNFGP 243
YC+ Y + FG
Sbjct: 54 YCETHYNQLFGD 65
Score = 28.0 bits (63), Expect = 0.81
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 101 CSKFLDSTNCTEHEKELYCRQCHGRKYGP 129
C K E + YC + + +G
Sbjct: 37 CEKPFLGHRHYERKGLAYCETHYNQLFGD 65
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 50.1 bits (120), Expect = 1e-08
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
C C K++ + +H CF C CSK L T E + YC C+
Sbjct: 6 SGCVKCNKAI-TSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64
Query: 82 PKGYG 86
G
Sbjct: 65 GPSSG 69
Score = 44.3 bits (105), Expect = 2e-06
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C +C + + + +++ WH CF C C + L ++ YC CY
Sbjct: 8 CVKCNKAI-TSGGITYQDQPWHADCFVCVTCSKKLAGQRFTA-VEDQYYCVDCYKNFVSG 65
Query: 342 KGCG 345
G
Sbjct: 66 PSSG 69
Score = 42.8 bits (101), Expect = 5e-06
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 15/76 (19%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK- 231
C +C + + + + WH CF C C+K L + + +
Sbjct: 8 CVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAG-------------QRFTAVEDQY 53
Query: 232 YCKACYGKNFGPKGFG 247
YC CY G
Sbjct: 54 YCVDCYKNFVSGPSSG 69
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 49.3 bits (117), Expect = 8e-08
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 1/92 (1%)
Query: 168 APGKGCPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCY 226
C C + A E + K +H +CFKC C K + + DI C+
Sbjct: 6 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDI 65
Query: 227 GKKHKYCKACYGKNFGPKGFGYGHSPTLVSTS 258
+ K G PTL+
Sbjct: 66 YEWTKINGGSGGSGGSGGDVMVVGEPTLMGGE 97
Score = 42.7 bits (100), Expect = 2e-05
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 282 CPRCGFVVYAAEQ-MISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C C + A E M K++++H CF CA C + + ++DI C +
Sbjct: 11 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70
Query: 341 PKGCGFGLG 349
G G G
Sbjct: 71 INGGSGGSG 79
Score = 42.0 bits (98), Expect = 3e-05
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 22 PKCPACGKSVYAAEE-RVAGGYKFHKMCFKCSMCSKFLDS-TNCTEHEKELYCRQCH 76
C +C K + A E +H CFKC+ C K ++ C Q
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDI 65
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 47.5 bits (113), Expect = 1e-07
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 3/65 (4%)
Query: 22 PKCPACGKSVYAAEER---VAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGR 78
C C + ++H CF C CS L ++ C C
Sbjct: 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65
Query: 79 KYGPK 83
GP
Sbjct: 66 ISGPS 70
Score = 40.6 bits (95), Expect = 4e-05
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 282 CPRCGFVVYAAEQ---MISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKN 338
C C + + + R WH CF+C C SL +DI C C
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLT-ERDDILCPDCGKDI 66
Query: 339 FGPK 342
GP
Sbjct: 67 SGPS 70
Score = 39.0 bits (91), Expect = 1e-04
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 170 GKGCPRCG---GVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCY 226
GC C + + + + +WH CF C+ C+ +L +
Sbjct: 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVG-------------RGFL 51
Query: 227 GKKHK-YCKACYGKNFGPK 244
++ C C GP
Sbjct: 52 TERDDILCPDCGKDISGPS 70
Score = 26.3 bits (58), Expect = 3.7
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 101 CSKFLDSTNCTEHEKELYCRQCHGRKYGPK 130
CS L ++ C C GP
Sbjct: 41 CSLSLVGRGFLTERDDILCPDCGKDISGPS 70
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 47.4 bits (113), Expect = 1e-07
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
C CG+ + A +H CF+C +C + L ++ CR CH R+
Sbjct: 6 SGCHQCGEFI-IGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64
Query: 82 PK 83
Sbjct: 65 SG 66
Score = 41.3 bits (97), Expect = 2e-05
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKY 232
C +CG + + A + WH +CF+C C + L I C+ C+ ++
Sbjct: 8 CHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLADIGFVK-NAGRHLCRPCHNREKAS 65
Query: 233 CKAC 236
+
Sbjct: 66 GPSS 69
Score = 39.3 bits (92), Expect = 8e-05
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C +CG + + + N WH CF C C L CR C+ +
Sbjct: 8 CHQCGEFI-IGRVIKAMNNSWHPECFRCDLCQEVLADIGFVK-NAGRHLCRPCHNREKAS 65
Query: 342 K 342
Sbjct: 66 G 66
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 47.3 bits (113), Expect = 2e-07
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
P+C C K++ +H+ C C+ C L T +++ YC C G +
Sbjct: 16 PRCARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFA 74
Query: 82 PK 83
Sbjct: 75 SG 76
Score = 40.0 bits (94), Expect = 6e-05
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKH-K 231
C RC + V + WHR+C C C L D+D YC C+G+
Sbjct: 18 CARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAG-QQFTSRDEDPYCVACFGELFAS 75
Query: 232 YCKA 235
+
Sbjct: 76 GPSS 79
Score = 39.6 bits (93), Expect = 8e-05
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGP 341
C RC + + +++ WHR C C C L D D YC C+G+ F
Sbjct: 18 CARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAGQQFTS-RDEDPYCVACFGELFAS 75
Query: 342 K 342
Sbjct: 76 G 76
Score = 26.9 bits (60), Expect = 2.9
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 12/73 (16%)
Query: 70 LYCRQCHGRKYGPKGYGFGG---GAGCLSMDA---------GMCSKFLDSTNCTEHEKEL 117
C+ K+ P+ G D C L T +++
Sbjct: 4 GSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDP 63
Query: 118 YCRQCHGRKYGPK 130
YC C G +
Sbjct: 64 YCVACFGELFASG 76
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 47.0 bits (112), Expect = 3e-07
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
P C C + + VA G +H F C+ C + E + LYC C+ + +
Sbjct: 26 PMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84
Query: 82 PK 83
Sbjct: 85 SG 86
Score = 40.1 bits (94), Expect = 8e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 299 NRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPK 342
+ WH F+CA C ++ + +YC CY K F
Sbjct: 44 GKSWHPEEFNCAHCKNTMAYIGFVE-EKGALYCELCYEKFFASG 86
Score = 37.8 bits (88), Expect = 4e-04
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 229
C C V+ ++A G WH + F C C T+ I + +YC+ CY K
Sbjct: 28 CAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVE-EKGALYCELCYEKF 82
Score = 26.6 bits (59), Expect = 3.7
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 101 CSKFLDSTNCTEHEKELYCRQCHGRKYGPK 130
C + E + LYC C+ + +
Sbjct: 57 CKNTMAYIGFVEEKGALYCELCYEKFFASG 86
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 45.9 bits (109), Expect = 4e-07
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 21 NPKCPACGKSVYAAEERV-AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79
+ C CG+ V V A FH CF CS C L + E+ YC C+
Sbjct: 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVAT 64
Query: 80 Y 80
Sbjct: 65 L 65
Score = 45.9 bits (109), Expect = 5e-07
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHK 231
C CG V + A +H CF C C L ++ YC+ CY +
Sbjct: 8 CGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRG-QHFYAVERRAYCEGCYVATLE 66
Query: 232 YCKAC 236
+
Sbjct: 67 SGPSS 71
Score = 40.5 bits (95), Expect = 3e-05
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C CG V + +R++H CF C+ C L + + YC GCY
Sbjct: 8 CGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAV-ERRAYCEGCYVATLE 66
Query: 341 P-KGCG 345
G
Sbjct: 67 SGPSSG 72
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 46.2 bits (110), Expect = 5e-07
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 299 NRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPK 342
+ +H CF+C CHR LD + I+C + + F
Sbjct: 34 GKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASG 77
Score = 45.1 bits (107), Expect = 1e-06
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 22 PKCPACGKSVYAAEERV--AGGYKFHKMCFKCSMCSKFLDSTN-CTEHEKELYCRQCHGR 78
KC C + + +R+ A G +H CF C +C + LD + +++C + R
Sbjct: 16 EKCATCSQPI---LDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHR 72
Query: 79 KYGPK 83
K+
Sbjct: 73 KFASG 77
Score = 44.3 bits (105), Expect = 2e-06
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 229
C C + + A G +H CF C C++ LD I I+C + +K
Sbjct: 18 CATCSQPI-LDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 44.6 bits (106), Expect = 2e-06
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
PKC C + V A +H CF C C + + E + +C + + G
Sbjct: 16 PKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 74
Query: 82 PK 83
Sbjct: 75 SG 76
Score = 37.7 bits (88), Expect = 4e-04
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 277 RNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYG 336
C C V + + + +WH CF C DC S + + + D +C Y
Sbjct: 13 MFSPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFE-LDGRPFCELHYH 70
Query: 337 KNFGPK 342
G
Sbjct: 71 HRRGSG 76
Score = 37.3 bits (87), Expect = 6e-04
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 15/76 (19%)
Query: 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 229
C C V + A + WH +CF C DC + + + +
Sbjct: 15 SPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFST-------------GSFFELD 60
Query: 230 HK-YCKACYGKNFGPK 244
+ +C+ Y G
Sbjct: 61 GRPFCELHYHHRRGSG 76
Score = 26.2 bits (58), Expect = 5.5
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 12/72 (16%)
Query: 71 YCRQCHGRKYGPKGYGFGG---GAGCLSMDA---------GMCSKFLDSTNCTEHEKELY 118
+ + PK G +MD G C + + E + +
Sbjct: 5 SSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPF 64
Query: 119 CRQCHGRKYGPK 130
C + + G
Sbjct: 65 CELHYHHRRGSG 76
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 44.5 bits (105), Expect = 2e-06
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 22 PKCPACGKSVYAAEER---VAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCH 76
C AC K + ++H CF C CS L KE++C++C
Sbjct: 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCG 63
Score = 37.5 bits (87), Expect = 4e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 170 GKGCPRCG---GVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCY 226
GC C + A+ + + S+WH +CF C C+ +L +K+I+C+ C
Sbjct: 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVG-KGFLTQNKEIFCQKCG 63
Query: 227 GK 228
Sbjct: 64 SG 65
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 282 CPRCGFVVYA---AEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGK 337
C C + A+ + ++ WH CF+C C SL + +I+C+ C
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLT-QNKEIFCQKCGSG 65
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 44.4 bits (105), Expect = 2e-06
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSK-FLDSTNCTEHEKELYCRQCH 76
+C +C + + E A G +H CF C++C F T + KE C++C
Sbjct: 16 TRCFSCDQFI-EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70
Score = 40.2 bits (94), Expect = 6e-05
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCY 226
G C C + E V A G +H CF C C + K+ C+ C
Sbjct: 15 GTRCFSCDQFI-EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70
Score = 38.2 bits (89), Expect = 2e-04
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCY 335
C C + E + + + +H CF CA C + + C+ C
Sbjct: 18 CFSCDQFI-EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 44.0 bits (104), Expect = 2e-06
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 22 PKCPACGKSVYAAEER----VAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCH 76
KC C + + G +H CF C CS L + H++++YC C
Sbjct: 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCA 74
Score = 39.8 bits (93), Expect = 7e-05
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 170 GKGCPRCG----GVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTC 225
K C C G + V +G WH CF C+ C+ L + + +YC C
Sbjct: 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLAN-KRFVFHQEQVYCPDC 73
Query: 226 YGK 228
K
Sbjct: 74 AKK 76
Score = 36.7 bits (85), Expect = 8e-04
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 282 CPRCGFVVYA----AEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGK 337
C C + + + + + WH CF C C +L + +YC C K
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVF-HQEQVYCPDCAKK 76
Score = 26.3 bits (58), Expect = 4.6
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 17/72 (23%)
Query: 69 ELYCRQCHGRKYGPK-------GYGFGGGAGCLSMDAG----------MCSKFLDSTNCT 111
C+ K GFG G+ ++ + CS L +
Sbjct: 3 SGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFV 62
Query: 112 EHEKELYCRQCH 123
H++++YC C
Sbjct: 63 FHQEQVYCPDCA 74
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 44.3 bits (104), Expect = 4e-06
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 7/113 (6%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTN--CTEHEKELYCRQCHGRK 79
C C +++ A +H+ C C +C L CR+ + R
Sbjct: 4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 63
Query: 80 YGPKGYGFGGGAGCLSMDAGMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 132
G G+ GG + + + + ++ L R + + G
Sbjct: 64 GGSGGHMGSGGDVMVVGEPTLMGGEF-----GDEDERLITRLENTQFDAANGI 111
Score = 41.2 bits (96), Expect = 5e-05
Identities = 13/75 (17%), Positives = 18/75 (24%), Gaps = 2/75 (2%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINA-CDGPDKDIYCKTCY-GKKH 230
C C + + A WH C C C L + C+ Y
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65
Query: 231 KYCKACYGKNFGPKG 245
G + G
Sbjct: 66 SGGHMGSGGDVMVVG 80
Score = 35.8 bits (82), Expect = 0.004
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLND-GPDNDIYCRGCYGKNFG 340
C C + + + ++ WH C SC C L CR Y + G
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65
Query: 341 PKGCG 345
G
Sbjct: 66 SGGHM 70
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 43.2 bits (102), Expect = 4e-06
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHG 77
+ P C CG + ++ H C+ C+ C L E ++YC +
Sbjct: 12 AQKLPMCDKCGTGIVGVFVKLRDR-HRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHAR 70
Query: 78 RKYGPK 83
+
Sbjct: 71 ERVSGP 76
Score = 36.7 bits (85), Expect = 0.001
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C +CG + + ++R H C+ C DC +L ++ IYC +
Sbjct: 18 CDKCGTGIV--GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFV-EDQIYCEKHARERVS 74
Query: 341 PK 342
Sbjct: 75 GP 76
Score = 35.9 bits (83), Expect = 0.002
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 166 KAAPGKGCPRCG--GVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCK 223
+ P C G V + H +C+ C DC L D+ IYC+
Sbjct: 8 SIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQ-IYCE 66
Query: 224 TCYGKK 229
++
Sbjct: 67 KHARER 72
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 43.2 bits (102), Expect = 4e-06
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 22 PKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDS--TNCTEHEKELYCRQCHGRK 79
C C + VAG +K+H CF C C ++ LYC +CH
Sbjct: 16 EFCHGCSLLM-TGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74
Query: 80 YGPKGYG 86
G
Sbjct: 75 VSGPSSG 81
Score = 37.5 bits (87), Expect = 5e-04
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 277 RNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDND-IYCRGCY 335
+ G+ C C ++ M++ +H CF+C C ++ + + +YC C+
Sbjct: 13 KFGEFCHGCSLLM-TGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCH 71
Query: 336 GKNFGPKGCG 345
+ G
Sbjct: 72 NEVVSGPSSG 81
Score = 35.5 bits (82), Expect = 0.003
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKK 229
G+ C C ++ ++A ++H +CF C C + D D Y +
Sbjct: 15 GEFCHGCSLLM-TGPFMVAGEFKYHPECFACMSCKVII--------EDGDAYALVQHAT- 64
Query: 230 HKYCKACYGKNFGPK 244
YC C+ +
Sbjct: 65 -LYCGKCHNEVVSGP 78
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 42.9 bits (101), Expect = 7e-06
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 22 PKCPACGKSVYAAEERV--AGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79
P C CG + V A H CF C+ C+ L E ELYC +
Sbjct: 26 PLCDKCGSGI---VGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARAR 82
Query: 80 YGPK 83
Sbjct: 83 TSGP 86
Score = 40.2 bits (94), Expect = 6e-05
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C +CG + ++ +++ H CF CADC+ +L + ++YC
Sbjct: 28 CDKCGSGIV--GAVVKARDKYRHPECFVCADCNLNLKQKGYFF-VEGELYCETHARARTS 84
Query: 341 PKGCG 345
G
Sbjct: 85 GPSSG 89
Score = 37.9 bits (88), Expect = 5e-04
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKH 230
C +CG + V A+ H +CF C DCN L + +YC+T +
Sbjct: 28 CDKCGSGI-VGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGE-LYCETHARART 83
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 39.8 bits (93), Expect = 7e-05
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 21 NPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKY 80
C C + + + +H F C+ C K L + E + ELYC CH +
Sbjct: 15 KYICQKCHAII-DEQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMG 72
Score = 37.1 bits (86), Expect = 6e-04
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNF 339
C +C ++ + +I KN +H F+CA+C + L + ++YC C+ K
Sbjct: 18 CQKCHAII-DEQPLIFKNDPYHPDHFNCANCGKELTADAREL--KGELYCLPCHDKMG 72
Score = 35.9 bits (83), Expect = 0.002
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKY 232
C +C ++ + ++ K +H F C +C K L + ++YC C+ K
Sbjct: 18 CQKCHAII-DEQPLIFKNDPYHPDHFNCANCGKELTAD--ARELKGELYCLPCHDKMGVS 74
Query: 233 CKAC 236
+
Sbjct: 75 GPSS 78
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 37.8 bits (87), Expect = 3e-04
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 21 NPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSK-FLDSTNCTEHEKELYCRQC 75
+ C +C K + AG +H C C C + F + ++ C
Sbjct: 5 SSGCDSCEKYI-TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPAC 59
Score = 31.6 bits (71), Expect = 0.060
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 167 AAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCY 226
++ GC C + + A +H C C C + I+ C
Sbjct: 2 SSGSSGCDSCEKYI-TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACR 60
Query: 227 GKK 229
Sbjct: 61 QAA 63
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 33.5 bits (76), Expect = 0.005
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 21 NPKCPACGKSVYAAEERVAGGYKFHKMCF 49
NP C CGK VY E+ +HK CF
Sbjct: 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31
Score = 33.1 bits (75), Expect = 0.005
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCF 307
C RCG +VY E++ ++ WH+ CF
Sbjct: 6 CARCGKIVYPTEKVNCLDKFWHKACF 31
Score = 29.6 bits (66), Expect = 0.10
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 171 KGCPRCGGVVFAAEQVLAKGSEWHRKCF 198
C RCG +V+ E+V WH+ CF
Sbjct: 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer
membrane, electron trans; HET: HEC; 3.20A {Shewanella
oneidensis}
Length = 669
Score = 36.0 bits (81), Expect = 0.020
Identities = 38/310 (12%), Positives = 64/310 (20%), Gaps = 28/310 (9%)
Query: 71 YCRQCHGRKYGPKGYGFGGGAGCLSMDAGMCSKFLDSTNCTEHEKEL------------- 117
C CH K G + C +L
Sbjct: 213 TCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNPDLADRQNWYRVPTME 272
Query: 118 YCRQCHGRKYGPKGYG---FGGGAGCLSMDAGEHLTENNAPRTTVIDTAKIKAAPGKGCP 174
C CH + P G G + C++ + ++ A+ A+
Sbjct: 273 ACGACHTQINFPAGQGHPAQTDNSNCVACHNADWTANVHSNAAQTSALAQFNASISSASM 332
Query: 175 RCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCK 234
G + A + + + + I A G D + +
Sbjct: 333 DANGTITVAVSLTNPTTGTAYADSADKLKFISDLRIYANWGTSFDY---SSRSARSIRLP 389
Query: 235 ACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCG-------- 286
+ Y S V ES + K C
Sbjct: 390 ESTPIAGSNGTYSYNISGLTVPAGTESDRGGLAIQGRVCAKDSVLVDCSTELAEVLVIKS 449
Query: 287 -FVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCG 345
+ + + R CA CH D C+ C+ N
Sbjct: 450 SHSYFNMSALTTTGRREVISNAKCASCHGDQQLNIHGARNDLAGQCQLCHNPNMLADATA 509
Query: 346 FGLGAGALTM 355
+
Sbjct: 510 TNPSMTSFDF 519
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 31.0 bits (70), Expect = 0.066
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 23 KCPACGKSVYAAEERVA-GGYKFHKM--CFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79
C C ++ +RV + +H CF CS CSK L E ++C ++
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63
Query: 80 Y 80
Sbjct: 64 M 64
Score = 28.3 bits (63), Expect = 0.59
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 282 CPRCGFVVYAAEQMIS-KNRIWH--RRCFSCADCHRSL 316
C C + Q ++ N WH CF C+ C + L
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL 42
Score = 26.0 bits (57), Expect = 4.1
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 171 KGCPRCGGVVFAAEQVLA-KGSEWH--RKCFKCRDCNKTL 207
C C + Q + WH +CF C C+K L
Sbjct: 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.13
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 27 CGKSVYAAEERVAGGYKFH-KMCFKCSMCSKF-LDSTNCTEHEKEL 70
GK+ A + V YK KM FK F L+ NC E L
Sbjct: 161 SGKTWVALD--VCLSYKVQCKMDFKI-----FWLNLKNCNSPETVL 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.21
Identities = 47/328 (14%), Positives = 76/328 (23%), Gaps = 143/328 (43%)
Query: 118 YCRQCHGRKYGP-------KGY-GFGGG---AGCLSM-DAGEHLTEN------------- 152
Y + P KG G G A ++ D+ E +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 153 ----NAPRTTVIDTA-KIKAAPGKGCP----RCGGVVFAAEQVLAKGSEWHRKCFKCRDC 203
P T++ + + +G P + EQV
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL--TQEQVQDY----------VNKT 356
Query: 204 NKTLDS--------INACD-----GPDKDIY-----------------CKTCYGKKHKYC 233
N L + +N GP + +Y + + ++
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---- 412
Query: 234 KACYGKNFGPKG--FGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGD-GCPRCGFVVY 290
K + F P F HS L ++ + + D P VY
Sbjct: 413 KLKFSNRFLPVASPF---HSHLL----VPASDLINKDLVKNNVSFNAKDIQIP-----VY 460
Query: 291 AAE-----------------QMISKNRI-WHRRCFSCA----DC------------HRSL 316
I + + W A D HR+
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 317 DST--------NLNDGPDNDIYCRGCYG 336
D T L+ PD+D YG
Sbjct: 521 DGTGVRVIVAGTLDINPDDD------YG 542
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.26
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWH 194
C CG V+ +++++ SEW
Sbjct: 45 CALCGLVL--SDKLVDTRSEWR 64
Score = 27.7 bits (61), Expect = 5.4
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCFS 308
C CG V+ +++++ W R FS
Sbjct: 45 CALCGLVL--SDKLVDTRSEW--RTFS 67
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding,
oxidoreductase, oxygen tolerance; HET: FSX SBY PSW;
2.04A {Desulfovibrio vulgaris}
Length = 317
Score = 31.6 bits (71), Expect = 0.32
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 269 RPTSGLKGRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSC------ADCHRSLDSTNLN 322
RPT + CP +++ R C ADC + +N
Sbjct: 232 RPTPFFGRNIHENCPYLDKYDEGVMSATFTDKVGCRYDLGCKGPMTMADCFERKWNGGVN 291
Query: 323 DGPDNDIYCRGCYGKNFGPKGCGF 346
+ C GC +F F
Sbjct: 292 -WCVQNAVCIGCVEPDFPDGKSPF 314
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 976
Score = 32.0 bits (72), Expect = 0.34
Identities = 8/62 (12%), Positives = 12/62 (19%), Gaps = 5/62 (8%)
Query: 78 RKYGPKGYGFGGGAGCLSMDA-GMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGG 136
G G+ A G + + G Y + FG
Sbjct: 179 EAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSP----DINVDIGDTYMGAFHTFGK 234
Query: 137 GA 138
Sbjct: 235 MH 236
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 4/19 (21%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 260 ESTMQFY--DARPTSGLKG 276
+++++ Y D+ P +K
Sbjct: 26 QASLKLYADDSAPALAIKA 44
Score = 28.8 bits (63), Expect = 1.7
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 4 KQYKKKLDI-IMPFVPAENPKCPACGKSVYAAEE 36
KQ KKL + + PA ++ A E
Sbjct: 19 KQALKKLQASLKLYADDS---APAL--AIKATME 47
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 29.4 bits (65), Expect = 1.8
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 5 QYKKKLDIIMPFVPAENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCS 55
+ L+ CPACG A R G + CS+C+
Sbjct: 166 HWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLS-CSLCA 215
Score = 27.1 bits (59), Expect = 9.5
Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 26/87 (29%)
Query: 173 CPRCGGVVFAAEQVLAK-------------GSEWHRKCFKCRDCNKT----LDSINACDG 215
CP CG A EWH KC C ++ S+
Sbjct: 185 CPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQ 244
Query: 216 PDKDIY-----CKTCYGKKHKYCKACY 237
P + C +C Y K Y
Sbjct: 245 PAEKAVLRAETCPSC----QGYLKQFY 267
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 29.1 bits (66), Expect = 2.4
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 2/46 (4%)
Query: 160 IDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNK 205
++ G P GG + K S +K +
Sbjct: 606 AKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSA--KKSPPADEVGS 649
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU
PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1
g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A
2opf_A* 1q3b_A*
Length = 262
Score = 28.7 bits (65), Expect = 2.7
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 276 GRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADC 312
R+G+ C RCG +I K + R + C C
Sbjct: 231 HRDGEPCERCG-------SIIEKTTLSSRPFYWCPGC 260
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 28.7 bits (64), Expect = 3.0
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 47 MCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGY 85
M F C +C + L + + C Q H +GY
Sbjct: 1 MSFSCPLCHQPL-----SREKNSYICPQRHQFDMAKEGY 34
>3ouq_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.60A {Geobacter sulfurreducens}
Length = 161
Score = 28.1 bits (61), Expect = 3.5
Identities = 16/115 (13%), Positives = 21/115 (18%), Gaps = 2/115 (1%)
Query: 102 SKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVID 161
+ + EK C CH C S A V
Sbjct: 41 LRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVRCHSGSARPVAYRMKGAGEAVFS 100
Query: 162 TAKIKAAPGKGCPRC--GGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACD 214
C C + V E + C C + C
Sbjct: 101 HEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKGKSCGACHNDKMAFTVAGNCG 155
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A
{Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A*
1ft6_A*
Length = 211
Score = 28.3 bits (61), Expect = 3.6
Identities = 19/123 (15%), Positives = 27/123 (21%), Gaps = 8/123 (6%)
Query: 21 NPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMC-------SKFLDSTNCTEHEKELYCR 73
+ A ++ K + C C + + C
Sbjct: 30 AMESLKPNVKKEAKQKAKLDPAKDYTQDKDCVGCHVDGFGQKGGYTIESPKPMLTGVGCE 89
Query: 74 QCHGRKYGPKGYGFGGGAGCLSMDAGMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYG 133
CHG +G G K L H +E C CH G G
Sbjct: 90 SCHGPGRNFRGDHRKSGQAFEKSGKKTPRKDLAKKGQDFHFEER-CSACHLNYEGSPWKG 148
Query: 134 FGG 136
Sbjct: 149 AKA 151
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 28.4 bits (64), Expect = 3.9
Identities = 26/116 (22%), Positives = 35/116 (30%), Gaps = 32/116 (27%)
Query: 79 KYGPKGYGFGGGAGCLSMDAGMCSKF---LDSTNCTEHEKELYCRQCHGRKYGPKGYGFG 135
KYGP+ G + G +F L S N T C G
Sbjct: 97 KYGPESLGVSQTEINQQSEYGTLRRFMNLLGSPNWTSAM-----YMCI----GNTAGVHR 147
Query: 136 GGAGCLSMD----------AGEHLTENNAPRTTVIDTAKIKAAPGKGC------PR 175
G S G++L+ +N V +KAA +GC PR
Sbjct: 148 VTHGSYSFASFADSNCLLFIGKNLSNHNW----VSQFNDLKAALKRGCKLIVLDPR 199
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain;
1.98A {Staphylococcus aureus}
Length = 285
Score = 27.9 bits (63), Expect = 4.3
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 4 KQYKKKLDIIMPFVPAENP-----KCPACGKSVYAAEERVAGGYKFHKMCFKCS 52
+ KKK + + P KCP C K +Y E + +CF C
Sbjct: 8 RTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELA-----ENLNVCFNCD 56
>2cy3_A Cytochrome C3; electron transport (heme protein); HET: HEM; 1.70A
{Desulfomicrobium norvegicum} SCOP: a.138.1.1 PDB:
1w7o_A*
Length = 118
Score = 26.8 bits (58), Expect = 6.0
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 281 GCPRCGFVVYAAEQMISKNRIWHRRCF--SCADCHRSLDSTNLNDGPDNDIYCRGCYGKN 338
C + ++ +K+ F C DCH++L GP C C+ N
Sbjct: 62 TTSGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHKALKKDKKPTGP---TACGKCHTTN 118
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 27.9 bits (60), Expect = 6.3
Identities = 34/277 (12%), Positives = 58/277 (20%), Gaps = 19/277 (6%)
Query: 45 HKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGMCSKF 104
H K +E+ K G K G +D K
Sbjct: 99 HANLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDKA 158
Query: 105 LDSTNCTEHEKELYCRQCHGR---KYGPKGYGFGGGAGCLSMDAGEHLTENNAPRTTVID 161
+ + C CH R + + G H + A T +
Sbjct: 159 DHTKD-IRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAGRPSHALDYTANIETTVW 217
Query: 162 TAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTLDSINACDGPDKDIY 221
+ +GC C + + + K C + D + + Y
Sbjct: 218 ATMPQREVAEGCTMCHTNQNKCDNCHTRHEFSAAESRKPEACATCH---SGVDHNNWEAY 274
Query: 222 CKTCYGKKHKYCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDG 281
+ +GK N + + G N
Sbjct: 275 TMSKHGK-------LAEMNRDKWNWEVRLKDAFSKGGQNAPTCAACHMEYEGEYTHNITR 327
Query: 282 CPRCGFVVYAAEQMISKNRIWH-----RRCFSCADCH 313
R + + W +C CH
Sbjct: 328 KTRWANYPFVPGIAENITSDWSEARLDSWVLTCTQCH 364
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 6.5
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 133 GF--GGGAGCLSMDAGEHLTENNAPRTTVI-------DTAKIKA-APGKG 172
GF GAG + + + P ++ D APGKG
Sbjct: 1176 GFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKG 1225
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair,
sequence context; HET: DNA 08Q; 1.60A {Geobacillus
stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A*
3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A*
2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A*
3sar_A* 3sav_A* ...
Length = 273
Score = 27.1 bits (61), Expect = 7.9
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 276 GRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHR 314
GR G+ C RCG I K + R C C R
Sbjct: 242 GRQGNPCKRCG-------TPIEKTVVAGRGTHYCPRCQR 273
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 27.2 bits (60), Expect = 8.5
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 16/64 (25%)
Query: 20 ENPKCPACGKSVYAAEERVAGGYKFHKMCFKCSMCSKFLDSTNCTEHEKELYCRQCHGRK 79
+C CG ++ + AG + + + +E+ C++C K
Sbjct: 3 PQLRCIGCGAAIQFENPKNAG----------------YAPKSVLEKDAEEVICQRCFRLK 46
Query: 80 YGPK 83
+ +
Sbjct: 47 HYNE 50
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 27.5 bits (61), Expect = 9.2
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 21 NPKCPACGKSVYAAEERVAGGYKFHKMCF 49
CPAC V A G++F K
Sbjct: 569 YEHCPACSPKVIEAFTD--LGWEFVKKAL 595
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.474
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,588,928
Number of extensions: 337278
Number of successful extensions: 1832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1554
Number of HSP's successfully gapped: 355
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)