RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12252
(356 letters)
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 77.2 bits (190), Expect = 1e-18
Identities = 28/49 (57%), Positives = 33/49 (67%)
Query: 51 CSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAG 99
C +C K LDST H E+YC+ C+G+KYGPKG G G GAG LS D G
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKG 50
Score = 76.4 bits (188), Expect = 1e-18
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 100 MCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMDAGEHL 149
+C K LDST H E+YC+ C+G+KYGPKG G G GAG LS D GE L
Sbjct: 4 VCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESL 53
Score = 67.9 bits (166), Expect = 2e-15
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 309 CADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCGFGLGAGALTM 355
C C ++LDST + D +IYC+ CYGK +GPKG G G+GAG L+
Sbjct: 2 CMVCKKNLDSTTVAVHGD-EIYCKSCYGKKYGPKGKGKGMGAGTLST 47
Score = 54.5 bits (131), Expect = 1e-10
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 200 CRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGYGHSPTLVST 257
C C K LDS D+ YCK+CYGK +GPKG G G +ST
Sbjct: 2 CMVCKKNLDSTTVAVHGDE------------IYCKSCYGKKYGPKGKGKGMGAGTLST 47
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 69.4 bits (170), Expect = 4e-16
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 50 KCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMD 97
+C+ C K L+ST + + E+YC+ C+ + +GPKG+GFG GAG L
Sbjct: 1 RCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHS 48
Score = 64.0 bits (156), Expect = 3e-14
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 100 MCSKFLDSTNCTEHEKELYCRQCHGRKYGPKGYGFGGGAGCLSMD 144
C K L+ST + + E+YC+ C+ + +GPKG+GFG GAG L
Sbjct: 4 KCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHS 48
Score = 64.0 bits (156), Expect = 4e-14
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 309 CADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKGCGFGLGAGALTMA 356
CA C +SL+ST L D D +IYC+GCY KNFGPKG GFG GAGAL +
Sbjct: 2 CAKCGKSLESTTLAD-KDGEIYCKGCYAKNFGPKGFGFGQGAGALIHS 48
Score = 50.1 bits (120), Expect = 3e-09
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 12/51 (23%)
Query: 199 KCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGYG 249
+C C K+L+S D D +IYCK CY KNFGPKGFG+G
Sbjct: 1 RCAKCGKSLESTTLAD-KDGEIYCKGCY-----------AKNFGPKGFGFG 39
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein,
CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 54.8 bits (132), Expect = 7e-11
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 50 KCSMCSKFLDSTNCTEHEKELYC-RQCHGRKYGPKGYGFGG 89
KC C K L S EHE + YC C+ +GPKG+G GG
Sbjct: 1 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGG 41
Score = 49.7 bits (119), Expect = 4e-09
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 100 MCSKFLDSTNCTEHEKELYC-RQCHGRKYGPKGYGFGG 136
C K L S EHE + YC C+ +GPKG+G GG
Sbjct: 4 KCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGG 41
Score = 42.0 bits (99), Expect = 2e-06
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 199 KCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFGPKGFGYG 249
KC C KTL S + + YC CY FGPKGFG G
Sbjct: 1 KCEKCGKTLTSGGHAEH-EGKPYCN----------HPCYSAMFGPKGFGRG 40
Score = 39.7 bits (93), Expect = 1e-05
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 309 CADCHRSLDSTNLNDGPDNDIYC-RGCYGKNFGPKGCGFGLGAGALT 354
C C ++L S + + YC CY FGPKG G G GA + T
Sbjct: 2 CEKCGKTLTSGGHAEH-EGKPYCNHPCYSAMFGPKGFGRG-GAESHT 46
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 42.9 bits (101), Expect = 1e-06
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 18 PAENPKCPACGKSVYAAEERVAGGYKFHKMCF 49
+ CP CG++VYAAE+ + G +HK CF
Sbjct: 12 VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCF 43
Score = 42.1 bits (99), Expect = 2e-06
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCF 307
DGCPRCG VYAAE++I + WH+ CF
Sbjct: 15 SDGCPRCGQAVYAAEKVIGAGKSWHKSCF 43
Score = 41.4 bits (97), Expect = 3e-06
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 166 KAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCF 198
K GCPRCG V+AAE+V+ G WH+ CF
Sbjct: 11 KVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCF 43
>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 32
Score = 41.8 bits (98), Expect = 2e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 51 CSMCSKFLDSTNCTEHEKELYCRQCHGRKYG 81
C +C K LDST H+ E+YC+ C+G+KYG
Sbjct: 2 CMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 32
Score = 39.9 bits (93), Expect = 1e-05
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 99 GMCSKFLDSTNCTEHEKELYCRQCHGRKYG 128
+C K LDST H+ E+YC+ C+G+KYG
Sbjct: 3 MVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 32
Score = 31.4 bits (71), Expect = 0.009
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 309 CADCHRSLDSTNLNDGPDNDIYCRGCYGKNFG 340
C C ++LDST + D ++YC+ CYGK +G
Sbjct: 2 CMVCRKNLDSTTVAIH-DAEVYCKSCYGKKYG 32
Score = 30.2 bits (68), Expect = 0.022
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 200 CRDCNKTLDSINACDGPDKDIYCKTCYGKKH 230
C C K LDS D ++YCK+CYGKK+
Sbjct: 2 CMVCRKNLDSTTVAIH-DAEVYCKSCYGKKY 31
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 39.0 bits (91), Expect = 2e-05
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 16 FVPAENPKCPACGKSVYAAEERVAGGYKFHKMCF 49
F C C K+VY E +A FH CF
Sbjct: 2 FQAPARETCVECQKTVYPMERLLANQQVFHISCF 35
Score = 34.7 bits (80), Expect = 6e-04
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 164 KIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCF 198
K +A + C C V+ E++LA +H CF
Sbjct: 1 KFQAPARETCVECQKTVYPMERLLANQQVFHISCF 35
Score = 33.6 bits (77), Expect = 0.002
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 280 DGCPRCGFVVYAAEQMISKNRIWHRRCF 307
+ C C VY E++++ +++H CF
Sbjct: 8 ETCVECQKTVYPMERLLANQQVFHISCF 35
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 37.1 bits (86), Expect = 7e-05
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 21 NPKCPACGKSVYAAEERVAGGYKFHKMC 48
KCP C K+VY AE+ + G +HK C
Sbjct: 2 ASKCPKCDKTVYFAEKVSSLGKDWHKFC 29
Score = 35.2 bits (81), Expect = 4e-04
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRC 306
CP+C VY AE++ S + WH+ C
Sbjct: 5 CPKCDKTVYFAEKVSSLGKDWHKFC 29
Score = 34.8 bits (80), Expect = 6e-04
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKC 197
CP+C V+ AE+V + G +WH+ C
Sbjct: 5 CPKCDKTVYFAEKVSSLGKDWHKFC 29
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 28
Score = 36.4 bits (84), Expect = 1e-04
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKC 197
C RCG V+AAE+V+ G WH+ C
Sbjct: 4 CSRCGDSVYAAEKVIGAGKPWHKNC 28
Score = 34.9 bits (80), Expect = 5e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 280 DGCPRCGFVVYAAEQMISKNRIWHRRC 306
+ C RCG VYAAE++I + WH+ C
Sbjct: 2 EKCSRCGDSVYAAEKVIGAGKPWHKNC 28
Score = 34.1 bits (78), Expect = 0.001
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 23 KCPACGKSVYAAEERVAGGYKFHKMC 48
KC CG SVYAAE+ + G +HK C
Sbjct: 3 KCSRCGDSVYAAEKVIGAGKPWHKNC 28
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 31
Score = 34.6 bits (79), Expect = 6e-04
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 307 FSCADCHRSLDSTNLNDGPDNDIYCRGCYGKN 338
F CA C +SL+ST L + + +IYC+GCY KN
Sbjct: 1 FRCAKCGKSLESTTLTE-KEGEIYCKGCYAKN 31
Score = 31.1 bits (70), Expect = 0.011
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 49 FKCSMCSKFLDSTNCTEHEKELYCRQCHGR 78
F+C+ C K L+ST TE E E+YC+ C+ +
Sbjct: 1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK 30
Score = 29.2 bits (65), Expect = 0.052
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 198 FKCRDCNKTLDSINACDGPDKDIYCKTCYGK 228
F+C C K+L+S + + +IYCK CY K
Sbjct: 1 FRCAKCGKSLESTTLTE-KEGEIYCKGCYAK 30
Score = 25.4 bits (55), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 100 MCSKFLDSTNCTEHEKELYCRQCHGR 125
C K L+ST TE E E+YC+ C+ +
Sbjct: 5 KCGKSLESTTLTEKEGEIYCKGCYAK 30
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 33.6 bits (77), Expect = 0.002
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 23 KCPACGKSVYAAEERVAGGYKFHKMCF 49
C CG+ +Y E G+ FH+ CF
Sbjct: 10 LCALCGEHLYVLERLCVNGHFFHRSCF 36
Score = 30.5 bits (69), Expect = 0.021
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCF 307
GD C CG +Y E++ +HR CF
Sbjct: 8 GDLCALCGEHLYVLERLCVNGHFFHRSCF 36
Score = 29.8 bits (67), Expect = 0.043
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 166 KAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCF 198
+A G C CG ++ E++ G +HR CF
Sbjct: 4 EAGAGDLCALCGEHLYVLERLCVNGHFFHRSCF 36
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 32.2 bits (73), Expect = 0.005
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 282 CPRCGFVVYAAEQMISKNRIWHRRCF 307
C RCG +VY E++ ++ WH+ CF
Sbjct: 5 CARCGKIVYPTEKVNCLDKFWHKACF 30
Score = 28.3 bits (63), Expect = 0.095
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 21 NPKCPACGKSVYAAEERVAGGYKFHKMCF 49
NP C CGK VY E+ +HK CF
Sbjct: 2 NPNCARCGKIVYPTEKVNCLDKFWHKACF 30
Score = 27.2 bits (60), Expect = 0.32
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 171 KGCPRCGGVVFAAEQVLAKGSEWHRKCF 198
C RCG +V+ E+V WH+ CF
Sbjct: 3 PNCARCGKIVYPTEKVNCLDKFWHKACF 30
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 35
Score = 31.1 bits (70), Expect = 0.013
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 23 KCPACGKSVYAAEERVAGGYKFHKMCF 49
KC C K+VY AEE G FHK CF
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSCF 35
Score = 28.0 bits (62), Expect = 0.15
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 170 GKGCPRCGGVVFAAEQVLAKGSEWHRKCF 198
GK C C V+ AE+V +GS +H+ CF
Sbjct: 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCF 35
Score = 24.5 bits (53), Expect = 2.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 279 GDGCPRCGFVVYAAEQMISKNRIWHRRCF 307
G C C VY AE++ + +H+ CF
Sbjct: 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCF 35
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 30.8 bits (70), Expect = 0.016
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 50 KCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKG 84
+CS C+ L +YC+ + + KG
Sbjct: 1 RCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKG 35
Score = 26.2 bits (58), Expect = 0.71
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 101 CSKFLDSTNCTEHEKELYCRQCHGRKYGPKG 131
C+ L +YC+ + + KG
Sbjct: 5 CNNKLSLGTYASLHGRIYCKPHFNQLFKSKG 35
Score = 23.5 bits (51), Expect = 8.3
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 309 CADCHRSLDSTNLNDGPDNDIYCRGCYGKNFGPKG 343
C+ C+ L IYC+ + + F KG
Sbjct: 2 CSYCNNKLSLGTYAS-LHGRIYCKPHFNQLFKSKG 35
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 28
Score = 29.2 bits (65), Expect = 0.049
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 23 KCPACGKSVYAAEERVAGGYKFHKMCF 49
KC ACG++VY AEE G FH+ CF
Sbjct: 2 KCGACGRTVYHAEEVQCDGRSFHRCCF 28
Score = 23.0 bits (49), Expect = 9.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 173 CPRCGGVVFAAEQVLAKGSEWHRKCF 198
C CG V+ AE+V G +HR CF
Sbjct: 3 CGACGRTVYHAEEVQCDGRSFHRCCF 28
>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis
[TaxId: 70863]}
Length = 442
Score = 31.1 bits (69), Expect = 0.20
Identities = 26/198 (13%), Positives = 45/198 (22%), Gaps = 16/198 (8%)
Query: 148 HLTENNAPRTTVIDTAKIKAAPGKGCPRCGGVVFAAEQVLAKGSEWHRKCFKCRDCNKTL 207
H + T T +++ G +A S R C C+
Sbjct: 26 HEEQATDMMKTSHWTWELEQKLPDRTVVRGKKNSINNFCVAISSNEPR----CTSCHAGY 81
Query: 208 DSINACDGPDK--DIYCKTCYGKKHKYCKACYGKNFGPKGFGYGHSPTLVSTSGESTMQF 265
+ + C C+ Y K G V
Sbjct: 82 GWKDNTFDFKDKTKVDCLICHDTTGTYVKDPAGAGEPMAKLDLAKIAQNVGAPVRDNCGS 141
Query: 266 YDARPTSGLKGRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHRSLDSTNLNDGP 325
G ++GD + A + + F C +CH + +
Sbjct: 142 CHFYGGGGDAVKHGDLDSSMAYPDKATDVHMD----SDGNNFQCQNCHTTEKHQISGNAM 197
Query: 326 D------NDIYCRGCYGK 337
+ I C C+
Sbjct: 198 GVSPGGIDHIGCENCHDS 215
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 30.6 bits (68), Expect = 0.33
Identities = 17/105 (16%), Positives = 24/105 (22%), Gaps = 14/105 (13%)
Query: 78 RKYGPKGYGFGGGAGCLSMDAGMCSKFLDS---TNCTEHEKELYCRQCHGRKYGPKGYGF 134
+ YGP +SM + S C Y C P +
Sbjct: 178 KNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSF----YDWYCDLPPASP--QTW 231
Query: 135 GGGAGCLSMDAGEH-----LTENNAPRTTVIDTAKIKAAPGKGCP 174
G + +N P+T D KG
Sbjct: 232 GEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTK 276
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 26.2 bits (58), Expect = 0.62
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 308 SCADCHRSLDSTNLNDGPDNDIYCRGCYGKNF 339
+C CHR LD + I+C + + F
Sbjct: 1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 32
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.8 bits (57), Expect = 1.0
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 49 FKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGP 82
F C+ C + E E YC + P
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 34
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 28.3 bits (62), Expect = 2.0
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 215 GPDKDIYCKTCYGKKHKYCK 234
D+++ C+TC + C
Sbjct: 59 SIDRNLKCQTC-QEGMNECP 77
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 27.6 bits (61), Expect = 2.3
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 24 CPACGKSVYAAEERVAGGYKFHKMCFKCSMCS 55
CPACG A R G + CS+C+
Sbjct: 167 CPACGSPPMAGMIRQGGKETGLRYLS-CSLCA 197
>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 24.1 bits (52), Expect = 3.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 51 CSMCSKFLDSTNCTEHEKELYCRQCH 76
C CSK L T E + YC C+
Sbjct: 2 CVTCSKKLAGQRFTAVEDQYYCVDCY 27
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 218
Score = 26.0 bits (57), Expect = 6.3
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 49 FKCSMCSKFLDSTNCTEHEKELYCRQCHGRKYGPKG 84
+KC C K++D N H +E HG K K
Sbjct: 147 YKCEECGKYVDIENLEAHLRE------HGIKLHEKS 176
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 26.2 bits (57), Expect = 7.7
Identities = 17/92 (18%), Positives = 23/92 (25%), Gaps = 11/92 (11%)
Query: 233 CKAC----YGKNFGPKGFGYGHSPTLVSTSGESTMQFYDARPTSGLKGRNGDGCPRCGFV 288
C C Y + P + E Q+Y G G+ G
Sbjct: 193 CAQCHVEYYFTHKDNGPAAKPVFPWDNGFNPEDMYQYYKGHGAKGPDGKPGPFVDWVHAA 252
Query: 289 VYAA-------EQMISKNRIWHRRCFSCADCH 313
E ++ SCADCH
Sbjct: 253 SKVPMIKMQHPEYETFQDGPHGAAGVSCADCH 284
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg)
{Escherichia coli [TaxId: 562]}
Length = 44
Score = 23.5 bits (51), Expect = 7.9
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 276 GRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADCHR 314
GR G+ C CG I + R F C C +
Sbjct: 13 GRKGEPCRVCGT-------PIVATKHAQRATFYCRQCQK 44
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 26.1 bits (56), Expect = 8.7
Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 21/172 (12%)
Query: 193 WHRKCFKCRDCNKTLDSINACDGPDKDIYCKTCYGKKHKYCKACYGKNFG---PKGFGYG 249
+ + + + N K++ C C+ +K KA + K+ G
Sbjct: 116 YKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDKADHTKDIRMPTADTCGTC 175
Query: 250 HSPTLV------STSGESTMQFYDARPTSGLKGR-NGDGCPRCGFVVYAAEQMISKNRIW 302
H T Q+ RP+ L N + + +
Sbjct: 176 HLREFAERESERDTMVWPNGQWPAGRPSHALDYTANIETTVWATMPQREVAEGCTMCHTN 235
Query: 303 HRRCFSCADCHRS-----------LDSTNLNDGPDNDIYCRGCYGKNFGPKG 343
+C +C H + D + + Y +GK
Sbjct: 236 QNKCDNCHTRHEFSAAESRKPEACATCHSGVDHNNWEAYTMSKHGKLAEMNR 287
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli
[TaxId: 562]}
Length = 40
Score = 23.1 bits (50), Expect = 8.8
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 276 GRNGDGCPRCGFVVYAAEQMISKNRIWHRRCFSCADC 312
R+G+ C RCG +I K + R + C C
Sbjct: 9 HRDGEPCERCG-------SIIEKTTLSSRPFYWCPGC 38
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.2 bits (50), Expect = 9.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 173 CPRCGGVVFAAEQVL-AKGSEWHRKCF 198
C C + A +Q + KG+ WH+ CF
Sbjct: 11 CKGCFKAIVAGDQNVEYKGTVWHKDCF 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.474
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,441,460
Number of extensions: 73924
Number of successful extensions: 538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 153
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)